Query 025365
Match_columns 254
No_of_seqs 172 out of 1194
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 3.5E-72 7.5E-77 548.8 25.0 252 1-254 292-545 (545)
2 PRK09243 nicotinate phosphorib 100.0 3.9E-58 8.4E-63 444.3 19.5 222 2-236 239-464 (464)
3 TIGR01513 NAPRTase_put putativ 100.0 7.7E-57 1.7E-61 432.8 21.1 215 1-236 229-443 (443)
4 PRK12484 nicotinate phosphorib 100.0 2.7E-55 5.9E-60 422.2 22.5 208 4-246 234-441 (443)
5 PRK09198 putative nicotinate p 100.0 7.2E-36 1.6E-40 288.1 17.5 173 4-211 270-462 (463)
6 PHA02594 nadV nicotinamide pho 100.0 2.6E-35 5.6E-40 284.3 18.1 176 4-211 276-469 (470)
7 COG1488 PncB Nicotinic acid ph 100.0 1.2E-33 2.5E-38 269.8 11.3 159 2-209 246-405 (405)
8 KOG2511 Nicotinic acid phospho 100.0 3.3E-32 7.2E-37 250.7 7.2 167 1-187 251-417 (420)
9 cd01401 PncB_like Nicotinate p 100.0 1E-30 2.2E-35 247.2 12.7 112 4-124 258-377 (377)
10 PRK05321 nicotinate phosphorib 100.0 8.7E-30 1.9E-34 242.6 13.0 119 4-131 261-384 (400)
11 TIGR01514 NAPRTase nicotinate 100.0 1.7E-29 3.7E-34 239.9 12.8 113 4-125 261-378 (394)
12 PF04095 NAPRTase: Nicotinate 100.0 2E-29 4.2E-34 226.4 6.9 131 2-136 94-242 (245)
13 cd01569 PBEF_like pre-B-cell c 99.9 6.7E-27 1.5E-31 222.5 13.1 123 4-127 268-407 (407)
14 cd01570 NAPRTase_A Nicotinate 99.9 1.9E-26 4.2E-31 214.9 11.2 98 2-106 230-327 (327)
15 PRK07188 nicotinate phosphorib 99.9 4E-24 8.8E-29 201.0 12.9 102 3-118 214-337 (352)
16 cd01567 NAPRTase_PncB Nicotina 99.8 1.2E-20 2.6E-25 176.6 10.6 93 4-104 247-343 (343)
17 PRK08662 nicotinate phosphorib 99.8 3.8E-18 8.2E-23 160.3 12.5 112 4-131 213-329 (343)
18 cd01571 NAPRTase_B Nicotinate 99.7 2E-16 4.3E-21 146.4 12.7 99 4-117 197-300 (302)
19 cd00516 PRTase_typeII Phosphor 99.3 1.6E-11 3.4E-16 111.6 8.8 83 5-104 194-281 (281)
20 PF01729 QRPTase_C: Quinolinat 98.1 4.9E-06 1.1E-10 71.4 5.4 70 21-104 100-169 (169)
21 PRK05848 nicotinate-nucleotide 97.3 0.00097 2.1E-08 61.4 8.5 70 22-105 203-272 (273)
22 PRK08385 nicotinate-nucleotide 97.3 0.0019 4E-08 59.7 10.0 75 20-107 201-276 (278)
23 PRK07896 nicotinate-nucleotide 97.0 0.0034 7.4E-08 58.3 8.3 72 19-104 217-288 (289)
24 cd01573 modD_like ModD; Quinol 96.7 0.01 2.2E-07 54.5 9.0 68 23-105 205-272 (272)
25 PRK07428 nicotinate-nucleotide 96.3 0.026 5.6E-07 52.5 9.4 73 20-106 215-287 (288)
26 PRK09016 quinolinate phosphori 95.8 0.053 1.1E-06 50.6 8.7 68 21-105 228-295 (296)
27 PRK05742 nicotinate-nucleotide 95.6 0.083 1.8E-06 48.8 9.3 45 56-105 232-276 (277)
28 TIGR00078 nadC nicotinate-nucl 95.2 0.079 1.7E-06 48.6 7.7 43 58-105 223-265 (265)
29 PRK06106 nicotinate-nucleotide 94.6 0.16 3.5E-06 47.1 8.2 69 20-105 213-281 (281)
30 cd01568 QPRTase_NadC Quinolina 94.3 0.18 3.8E-06 46.2 7.6 67 22-103 202-268 (269)
31 cd00452 KDPG_aldolase KDPG and 93.2 0.31 6.8E-06 41.9 6.9 74 4-92 103-176 (190)
32 PRK06552 keto-hydroxyglutarate 92.8 0.3 6.5E-06 43.4 6.2 73 4-92 115-188 (213)
33 PRK06096 molybdenum transport 92.2 1.2 2.6E-05 41.4 9.6 72 22-108 210-281 (284)
34 TIGR00640 acid_CoA_mut_C methy 91.6 1.2 2.5E-05 36.6 8.0 68 17-92 51-118 (132)
35 cd01572 QPRTase Quinolinate ph 91.4 0.92 2E-05 41.6 7.9 43 57-104 226-268 (268)
36 PRK07455 keto-hydroxyglutarate 90.8 0.89 1.9E-05 39.3 6.9 36 55-92 150-185 (187)
37 TIGR01182 eda Entner-Doudoroff 90.6 0.32 6.9E-06 43.1 4.0 37 54-92 145-181 (204)
38 cd02071 MM_CoA_mut_B12_BD meth 90.3 1.9 4.2E-05 34.4 8.0 66 19-92 50-115 (122)
39 cd04726 KGPDC_HPS 3-Keto-L-gul 89.9 0.39 8.5E-06 40.9 3.9 37 56-94 157-193 (202)
40 PRK06978 nicotinate-nucleotide 89.6 2.3 4.9E-05 39.8 8.9 69 22-107 226-294 (294)
41 PRK06543 nicotinate-nucleotide 88.7 2.7 5.8E-05 39.1 8.6 67 22-105 214-280 (281)
42 TIGR03128 RuMP_HxlA 3-hexulose 87.9 1.2 2.5E-05 38.3 5.5 36 57-94 158-193 (206)
43 PRK05096 guanosine 5'-monophos 87.9 1 2.2E-05 43.0 5.4 128 9-151 110-250 (346)
44 PF01081 Aldolase: KDPG and KH 87.5 0.56 1.2E-05 41.3 3.2 38 54-93 145-182 (196)
45 PRK07114 keto-hydroxyglutarate 87.3 0.57 1.2E-05 42.0 3.2 37 54-92 155-193 (222)
46 cd00564 TMP_TenI Thiamine mono 87.1 0.69 1.5E-05 38.5 3.5 37 56-94 149-185 (196)
47 PRK08883 ribulose-phosphate 3- 87.0 1.3 2.8E-05 39.4 5.4 35 57-93 167-201 (220)
48 TIGR01305 GMP_reduct_1 guanosi 86.7 1.7 3.7E-05 41.5 6.2 94 7-109 107-208 (343)
49 TIGR01334 modD putative molybd 86.7 5.6 0.00012 36.8 9.5 67 22-103 209-275 (277)
50 COG2185 Sbm Methylmalonyl-CoA 86.6 4.3 9.4E-05 34.2 7.9 66 19-92 63-128 (143)
51 COG0157 NadC Nicotinate-nucleo 86.5 6.8 0.00015 36.5 9.8 47 56-107 233-279 (280)
52 cd02072 Glm_B12_BD B12 binding 86.0 6 0.00013 32.6 8.4 52 33-92 64-121 (128)
53 TIGR00693 thiE thiamine-phosph 86.0 0.88 1.9E-05 38.7 3.6 36 57-94 152-187 (196)
54 PRK09140 2-dehydro-3-deoxy-6-p 85.6 3 6.5E-05 36.7 6.9 37 54-92 147-184 (206)
55 TIGR01302 IMP_dehydrog inosine 85.2 1.7 3.7E-05 42.6 5.6 92 6-108 223-322 (450)
56 cd04729 NanE N-acetylmannosami 85.2 2.6 5.6E-05 36.8 6.2 36 57-94 177-213 (219)
57 PRK08072 nicotinate-nucleotide 85.1 7.7 0.00017 35.9 9.6 44 57-105 232-275 (277)
58 PRK08745 ribulose-phosphate 3- 85.1 2.4 5.1E-05 38.0 6.0 46 38-93 160-205 (223)
59 PRK00043 thiE thiamine-phospha 84.4 1.1 2.5E-05 38.2 3.6 37 56-94 159-195 (212)
60 PRK02261 methylaspartate mutas 84.3 6.9 0.00015 32.2 8.1 63 22-92 57-125 (137)
61 PRK07807 inosine 5-monophospha 84.3 2.2 4.8E-05 42.3 6.0 130 7-151 227-367 (479)
62 PRK01130 N-acetylmannosamine-6 83.2 3.7 8.1E-05 35.8 6.4 34 57-92 173-207 (221)
63 PRK06559 nicotinate-nucleotide 83.0 6.7 0.00014 36.7 8.2 68 22-106 218-285 (290)
64 COG0800 Eda 2-keto-3-deoxy-6-p 82.5 1.8 3.8E-05 38.7 4.0 37 54-92 150-186 (211)
65 PRK08091 ribulose-phosphate 3- 82.4 3.5 7.7E-05 37.1 6.0 46 37-92 167-212 (228)
66 PRK07695 transcriptional regul 82.2 1.4 3E-05 38.0 3.3 36 57-94 149-184 (201)
67 PRK14057 epimerase; Provisiona 81.8 3.6 7.8E-05 37.7 5.9 45 38-92 182-226 (254)
68 PRK05567 inosine 5'-monophosph 80.8 3.8 8.2E-05 40.5 6.1 90 7-107 228-325 (486)
69 PRK05718 keto-hydroxyglutarate 80.8 4.3 9.4E-05 36.0 5.9 37 54-92 152-188 (212)
70 PRK05581 ribulose-phosphate 3- 80.5 5.2 0.00011 34.5 6.2 36 58-95 171-206 (220)
71 TIGR01163 rpe ribulose-phospha 80.4 4 8.6E-05 34.8 5.4 35 58-94 166-200 (210)
72 PLN02716 nicotinate-nucleotide 80.0 21 0.00044 33.8 10.4 44 57-105 262-305 (308)
73 cd00429 RPE Ribulose-5-phospha 79.5 5.8 0.00013 33.7 6.2 36 57-94 166-201 (211)
74 PRK09722 allulose-6-phosphate 78.3 5.1 0.00011 36.1 5.6 45 38-92 158-203 (229)
75 TIGR02129 hisA_euk phosphoribo 78.1 8.9 0.00019 35.1 7.2 69 9-93 41-110 (253)
76 TIGR01037 pyrD_sub1_fam dihydr 78.1 8.2 0.00018 35.3 7.1 34 57-92 234-268 (300)
77 TIGR01303 IMP_DH_rel_1 IMP deh 78.0 5.1 0.00011 39.8 6.0 92 7-107 225-322 (475)
78 PRK04302 triosephosphate isome 77.2 7.7 0.00017 34.1 6.4 37 56-94 172-209 (223)
79 cd02932 OYE_YqiM_FMN Old yello 76.5 8.6 0.00019 35.9 6.9 76 5-94 240-327 (336)
80 cd04731 HisF The cyclase subun 76.2 8 0.00017 34.2 6.3 75 7-93 150-229 (243)
81 PRK06015 keto-hydroxyglutarate 75.5 4.8 0.0001 35.6 4.6 37 54-92 141-177 (201)
82 KOG2550 IMP dehydrogenase/GMP 75.4 4.9 0.00011 39.6 4.9 93 22-127 264-367 (503)
83 cd00381 IMPDH IMPDH: The catal 75.3 8.4 0.00018 36.2 6.4 98 6-114 93-201 (325)
84 PTZ00314 inosine-5'-monophosph 75.3 8.4 0.00018 38.4 6.7 92 6-108 240-339 (495)
85 COG0269 SgbH 3-hexulose-6-phos 74.7 16 0.00035 32.8 7.7 36 58-95 165-200 (217)
86 COG0036 Rpe Pentose-5-phosphat 74.6 5.7 0.00012 35.7 4.9 36 57-94 169-204 (220)
87 PRK07259 dihydroorotate dehydr 73.7 12 0.00026 34.2 7.0 34 57-92 234-268 (301)
88 PRK04180 pyridoxal biosynthesi 73.4 16 0.00035 34.2 7.7 71 23-95 143-242 (293)
89 PF00834 Ribul_P_3_epim: Ribul 73.0 3.4 7.3E-05 36.4 3.0 46 37-92 154-199 (201)
90 cd04740 DHOD_1B_like Dihydroor 72.5 21 0.00046 32.4 8.3 34 57-92 231-265 (296)
91 cd02803 OYE_like_FMN_family Ol 71.2 21 0.00045 32.8 8.0 36 57-93 281-317 (327)
92 PF01645 Glu_synthase: Conserv 70.9 5.6 0.00012 38.4 4.2 55 35-103 258-314 (368)
93 PRK13307 bifunctional formalde 70.8 13 0.00028 36.2 6.7 37 56-94 329-365 (391)
94 TIGR00177 molyb_syn molybdenum 70.6 35 0.00077 27.9 8.4 69 7-87 28-100 (144)
95 PRK06843 inosine 5-monophospha 70.3 9.2 0.0002 37.3 5.6 93 6-107 152-250 (404)
96 PRK08508 biotin synthase; Prov 68.8 37 0.0008 31.0 9.0 75 5-87 42-119 (279)
97 PLN02334 ribulose-phosphate 3- 68.3 6.8 0.00015 34.6 3.9 36 57-94 174-209 (229)
98 cd04730 NPD_like 2-Nitropropan 67.6 8.9 0.00019 33.4 4.5 39 57-97 156-195 (236)
99 TIGR03572 WbuZ glycosyl amidat 67.2 19 0.00041 31.5 6.5 32 57-90 197-230 (232)
100 cd02801 DUS_like_FMN Dihydrour 67.1 28 0.0006 30.1 7.5 36 56-93 182-219 (231)
101 PRK10605 N-ethylmaleimide redu 66.1 24 0.00053 33.6 7.5 44 58-107 293-336 (362)
102 cd00331 IGPS Indole-3-glycerol 65.7 25 0.00055 30.4 7.0 37 56-94 171-208 (217)
103 PRK08005 epimerase; Validated 64.9 10 0.00022 33.7 4.3 33 59-93 165-197 (210)
104 PF00478 IMPDH: IMP dehydrogen 63.8 6.1 0.00013 37.9 2.9 92 8-108 109-206 (352)
105 PRK07107 inosine 5-monophospha 63.7 16 0.00034 36.7 5.8 96 4-108 239-341 (502)
106 cd04733 OYE_like_2_FMN Old yel 63.2 33 0.00071 32.1 7.7 37 57-94 292-329 (338)
107 PF00733 Asn_synthase: Asparag 62.9 11 0.00023 32.5 4.1 70 38-109 1-80 (255)
108 PRK00278 trpC indole-3-glycero 62.8 25 0.00055 31.9 6.6 36 58-95 213-248 (260)
109 PRK07028 bifunctional hexulose 62.6 25 0.00055 34.0 7.0 36 57-94 162-197 (430)
110 TIGR00736 nifR3_rel_arch TIM-b 62.0 30 0.00065 31.2 6.8 74 7-92 149-225 (231)
111 cd00311 TIM Triosephosphate is 60.5 24 0.00051 32.0 5.9 54 34-92 180-233 (242)
112 cd04738 DHOD_2_like Dihydrooro 60.4 28 0.0006 32.5 6.6 34 57-92 280-314 (327)
113 cd04735 OYE_like_4_FMN Old yel 60.3 19 0.00041 34.1 5.5 78 5-93 234-319 (353)
114 cd02812 PcrB_like PcrB_like pr 60.1 38 0.00082 30.3 7.1 72 8-93 137-210 (219)
115 cd04734 OYE_like_3_FMN Old yel 59.1 40 0.00087 31.8 7.5 37 57-94 285-322 (343)
116 cd04722 TIM_phosphate_binding 59.0 11 0.00023 30.7 3.2 31 56-88 169-200 (200)
117 cd02808 GltS_FMN Glutamate syn 58.6 53 0.0012 31.6 8.4 47 37-92 271-319 (392)
118 cd02940 DHPD_FMN Dihydropyrimi 58.3 46 0.001 30.6 7.6 34 57-92 252-286 (299)
119 PRK09426 methylmalonyl-CoA mut 57.7 41 0.00088 35.3 7.8 69 16-92 630-698 (714)
120 cd02810 DHOD_DHPD_FMN Dihydroo 57.0 41 0.00089 30.3 7.0 35 57-93 243-278 (289)
121 PRK07114 keto-hydroxyglutarate 56.8 90 0.002 27.9 8.9 104 5-116 26-138 (222)
122 PRK13125 trpA tryptophan synth 55.6 27 0.00058 31.2 5.4 33 58-92 186-219 (244)
123 PRK13585 1-(5-phosphoribosyl)- 55.6 36 0.00078 29.8 6.2 36 57-94 193-229 (241)
124 COG1058 CinA Predicted nucleot 55.3 34 0.00073 31.4 6.1 51 6-67 21-71 (255)
125 TIGR01182 eda Entner-Doudoroff 55.3 77 0.0017 28.0 8.2 64 5-80 19-82 (204)
126 PRK13396 3-deoxy-7-phosphohept 55.1 42 0.0009 32.3 6.9 78 6-93 115-197 (352)
127 PTZ00170 D-ribulose-5-phosphat 55.1 17 0.00037 32.3 4.0 35 57-93 173-207 (228)
128 PRK13523 NADPH dehydrogenase N 54.8 32 0.0007 32.5 6.1 36 57-93 275-311 (337)
129 cd00452 KDPG_aldolase KDPG and 54.2 75 0.0016 27.1 7.8 64 5-80 15-78 (190)
130 cd02930 DCR_FMN 2,4-dienoyl-Co 53.3 30 0.00064 32.6 5.6 76 5-94 223-313 (353)
131 cd02933 OYE_like_FMN Old yello 53.2 62 0.0014 30.5 7.7 87 6-93 203-320 (338)
132 PRK08649 inosine 5-monophospha 52.4 39 0.00085 32.5 6.3 43 56-100 255-298 (368)
133 PF01884 PcrB: PcrB family; I 52.2 76 0.0017 28.7 7.7 64 18-92 152-216 (230)
134 cd00885 cinA Competence-damage 51.8 47 0.001 28.2 6.1 50 7-67 20-69 (170)
135 cd02911 arch_FMN Archeal FMN-b 51.5 48 0.001 29.6 6.4 31 57-89 191-222 (233)
136 cd04742 NPD_FabD 2-Nitropropan 51.5 1.1E+02 0.0023 30.2 9.2 72 21-97 179-258 (418)
137 cd00381 IMPDH IMPDH: The catal 51.3 76 0.0016 29.8 7.9 39 57-97 197-236 (325)
138 TIGR00262 trpA tryptophan synt 50.6 30 0.00064 31.4 4.9 34 57-92 198-232 (256)
139 PTZ00441 sporozoite surface pr 50.3 48 0.001 33.9 6.8 35 55-89 149-189 (576)
140 cd04727 pdxS PdxS is a subunit 49.0 51 0.0011 30.8 6.2 35 58-94 195-232 (283)
141 PRK02615 thiamine-phosphate py 48.6 18 0.00039 34.6 3.3 36 57-94 294-329 (347)
142 PRK03670 competence damage-ind 48.2 49 0.0011 30.1 5.9 50 7-66 21-70 (252)
143 cd02931 ER_like_FMN Enoate red 47.6 70 0.0015 30.6 7.2 74 5-94 251-342 (382)
144 PF03060 NMO: Nitronate monoox 47.4 40 0.00087 31.5 5.4 64 19-97 164-229 (330)
145 PLN02274 inosine-5'-monophosph 47.1 38 0.00083 33.9 5.5 131 6-151 247-388 (505)
146 PRK09431 asnB asparagine synth 47.0 49 0.0011 33.4 6.3 57 31-89 204-276 (554)
147 TIGR01304 IMP_DH_rel_2 IMP deh 46.6 42 0.00092 32.3 5.5 60 40-108 245-305 (369)
148 TIGR02814 pfaD_fam PfaD family 46.0 1.1E+02 0.0024 30.3 8.4 61 31-96 200-262 (444)
149 PRK14567 triosephosphate isome 45.7 74 0.0016 29.2 6.7 36 56-92 201-236 (253)
150 CHL00200 trpA tryptophan synth 45.7 34 0.00073 31.3 4.5 36 56-93 201-237 (263)
151 PLN02429 triosephosphate isome 45.5 49 0.0011 31.3 5.6 55 33-92 242-297 (315)
152 TIGR00735 hisF imidazoleglycer 45.1 82 0.0018 28.1 6.9 76 7-93 31-109 (254)
153 TIGR01306 GMP_reduct_2 guanosi 45.1 66 0.0014 30.5 6.5 72 7-87 94-167 (321)
154 cd01469 vWA_integrins_alpha_su 45.0 39 0.00084 28.2 4.5 37 54-90 102-144 (177)
155 cd04731 HisF The cyclase subun 44.6 82 0.0018 27.7 6.7 74 7-93 28-106 (243)
156 PRK00042 tpiA triosephosphate 44.4 61 0.0013 29.5 5.9 54 34-92 184-237 (250)
157 PRK10415 tRNA-dihydrouridine s 44.3 80 0.0017 29.5 6.9 34 57-92 194-229 (321)
158 cd01473 vWA_CTRP CTRP for CS 44.0 75 0.0016 27.2 6.2 35 55-89 108-150 (192)
159 cd01542 PBP1_TreR_like Ligand- 44.0 1.4E+02 0.003 25.3 8.0 63 13-86 23-86 (259)
160 PF06135 DUF965: Bacterial pro 43.9 18 0.00039 27.6 2.0 36 10-46 23-64 (79)
161 PRK07379 coproporphyrinogen II 43.3 1.5E+02 0.0032 28.5 8.8 80 10-89 52-136 (400)
162 PTZ00413 lipoate synthase; Pro 42.4 1E+02 0.0022 30.2 7.4 68 8-86 182-258 (398)
163 PRK13398 3-deoxy-7-phosphohept 42.1 93 0.002 28.5 6.8 73 5-93 40-123 (266)
164 PF15560 Imm8: Immunity protei 41.7 29 0.00062 28.8 3.0 40 30-69 17-58 (133)
165 cd06273 PBP1_GntR_like_1 This 41.7 1.5E+02 0.0033 25.2 7.9 64 11-85 21-85 (268)
166 cd06294 PBP1_ycjW_transcriptio 41.5 1.3E+02 0.0029 25.6 7.4 63 13-85 28-90 (270)
167 TIGR00433 bioB biotin syntheta 41.4 2.1E+02 0.0045 25.7 9.0 71 6-89 65-142 (296)
168 TIGR01501 MthylAspMutase methy 40.8 1.9E+02 0.0042 23.8 7.9 51 33-91 66-122 (134)
169 PRK08898 coproporphyrinogen II 40.7 1.5E+02 0.0033 28.3 8.4 70 20-89 72-143 (394)
170 cd00758 MoCF_BD MoCF_BD: molyb 40.0 1E+02 0.0022 24.7 6.1 34 10-43 23-56 (133)
171 PRK06015 keto-hydroxyglutarate 39.8 1.8E+02 0.0039 25.6 8.0 63 5-79 15-77 (201)
172 PF01791 DeoC: DeoC/LacD famil 39.8 1.2E+02 0.0025 26.7 6.9 69 5-84 148-227 (236)
173 cd06278 PBP1_LacI_like_2 Ligan 39.7 1.3E+02 0.0028 25.5 7.1 65 12-87 22-86 (266)
174 PF00977 His_biosynth: Histidi 39.6 45 0.00097 29.5 4.2 34 57-92 191-225 (229)
175 COG0800 Eda 2-keto-3-deoxy-6-p 39.6 1.4E+02 0.0031 26.7 7.3 41 5-45 24-64 (211)
176 PTZ00077 asparagine synthetase 39.2 81 0.0018 32.2 6.5 56 32-89 215-284 (586)
177 COG0134 TrpC Indole-3-glycerol 39.2 88 0.0019 28.8 6.1 77 7-95 165-244 (254)
178 TIGR01536 asn_synth_AEB aspara 39.0 86 0.0019 30.5 6.5 56 32-89 231-290 (467)
179 PF04123 DUF373: Domain of unk 39.0 1E+02 0.0023 29.5 6.8 70 7-81 52-124 (344)
180 cd06283 PBP1_RegR_EndR_KdgR_li 38.9 1.7E+02 0.0037 24.7 7.7 63 13-86 23-86 (267)
181 cd00958 DhnA Class I fructose- 38.8 1.5E+02 0.0033 25.8 7.5 36 58-95 180-222 (235)
182 cd01477 vWA_F09G8-8_type VWA F 38.6 57 0.0012 28.2 4.7 36 54-89 130-172 (193)
183 cd04747 OYE_like_5_FMN Old yel 38.6 88 0.0019 29.9 6.3 35 57-92 280-333 (361)
184 PRK14024 phosphoribosyl isomer 38.6 1.2E+02 0.0026 26.9 6.9 72 7-93 33-110 (241)
185 COG1902 NemA NADH:flavin oxido 38.2 1.9E+02 0.004 27.9 8.5 36 58-94 289-325 (363)
186 PRK13361 molybdenum cofactor b 38.1 1.8E+02 0.0039 27.0 8.2 63 10-76 105-177 (329)
187 PRK05718 keto-hydroxyglutarate 38.1 1.9E+02 0.0042 25.6 8.0 27 5-31 26-52 (212)
188 smart00633 Glyco_10 Glycosyl h 37.9 85 0.0018 28.0 5.8 36 56-92 117-163 (254)
189 PRK06582 coproporphyrinogen II 37.5 65 0.0014 31.0 5.3 69 21-89 62-132 (390)
190 smart00878 Biotin_carb_C Bioti 37.4 11 0.00023 30.0 -0.1 33 58-90 52-84 (107)
191 PLN02591 tryptophan synthase 36.9 41 0.00088 30.6 3.6 35 56-92 188-223 (250)
192 PLN02561 triosephosphate isome 36.4 95 0.0021 28.4 5.9 35 56-91 203-237 (253)
193 cd02809 alpha_hydroxyacid_oxid 36.4 1.6E+02 0.0035 27.0 7.5 34 57-92 227-261 (299)
194 PRK02083 imidazole glycerol ph 36.3 1.5E+02 0.0032 26.4 7.1 76 7-93 31-109 (253)
195 PRK14565 triosephosphate isome 36.2 91 0.002 28.3 5.7 36 56-92 188-223 (237)
196 PRK01033 imidazole glycerol ph 36.1 1.3E+02 0.0027 27.1 6.7 72 7-93 31-109 (258)
197 PLN02411 12-oxophytodienoate r 36.0 1.9E+02 0.0042 27.9 8.2 51 58-116 314-364 (391)
198 PRK11815 tRNA-dihydrouridine s 35.9 1.2E+02 0.0025 28.5 6.6 34 56-92 204-238 (333)
199 PLN02446 (5-phosphoribosyl)-5- 35.9 1.4E+02 0.0031 27.5 7.0 74 6-93 43-117 (262)
200 TIGR03104 trio_amidotrans aspa 35.7 1.2E+02 0.0025 30.9 7.0 54 33-88 239-295 (589)
201 cd06309 PBP1_YtfQ_like Peripla 35.7 1.7E+02 0.0037 25.1 7.3 61 14-85 24-87 (273)
202 COG3142 CutC Uncharacterized p 35.4 55 0.0012 29.8 4.1 55 23-77 56-112 (241)
203 cd01456 vWA_ywmD_type VWA ywmD 35.1 1.2E+02 0.0026 25.8 6.1 37 53-89 132-179 (206)
204 cd01464 vWA_subfamily VWA subf 35.1 1.3E+02 0.0027 24.8 6.1 35 55-89 107-148 (176)
205 PRK07565 dihydroorotate dehydr 34.8 1.8E+02 0.0039 27.1 7.7 34 57-92 239-273 (334)
206 PF15643 Tox-PL-2: Papain fold 34.5 48 0.001 26.4 3.1 26 5-30 22-47 (100)
207 cd01454 vWA_norD_type norD typ 34.3 62 0.0013 26.7 4.1 37 56-92 104-156 (174)
208 PRK08318 dihydropyrimidine deh 34.2 1.5E+02 0.0032 28.6 7.1 35 56-92 252-287 (420)
209 PF00994 MoCF_biosynth: Probab 34.1 95 0.002 25.0 5.1 49 7-66 18-66 (144)
210 PRK08649 inosine 5-monophospha 34.0 84 0.0018 30.3 5.4 69 6-88 141-218 (368)
211 TIGR02151 IPP_isom_2 isopenten 33.9 31 0.00068 32.4 2.4 36 56-93 253-289 (333)
212 cd04732 HisA HisA. Phosphorib 33.9 1.2E+02 0.0025 26.3 5.9 35 57-93 190-225 (234)
213 PF01081 Aldolase: KDPG and KH 33.8 1.3E+02 0.0027 26.5 6.1 63 5-79 19-81 (196)
214 PRK05473 hypothetical protein; 33.7 25 0.00054 27.2 1.4 36 10-46 26-67 (86)
215 TIGR01769 GGGP geranylgeranylg 33.7 1.7E+02 0.0037 25.9 6.9 68 8-87 136-205 (205)
216 TIGR03108 eps_aminotran_1 exos 33.5 1.3E+02 0.0027 30.7 6.9 57 31-89 235-294 (628)
217 TIGR01949 AroFGH_arch predicte 33.4 47 0.001 29.8 3.4 37 57-95 192-235 (258)
218 cd06316 PBP1_ABC_sugar_binding 33.4 1.8E+02 0.004 25.5 7.2 64 13-85 23-88 (294)
219 cd06305 PBP1_methylthioribose_ 33.3 2.1E+02 0.0045 24.4 7.4 64 12-86 22-88 (273)
220 PRK11750 gltB glutamate syntha 33.3 55 0.0012 37.1 4.4 59 31-103 1046-1107(1485)
221 cd01452 VWA_26S_proteasome_sub 33.0 1.7E+02 0.0037 25.4 6.7 36 57-92 109-150 (187)
222 cd06298 PBP1_CcpA_like Ligand- 32.9 2.7E+02 0.0059 23.5 8.0 62 14-85 24-85 (268)
223 PRK01215 competence damage-ind 32.8 1.2E+02 0.0027 27.6 6.1 51 7-68 24-74 (264)
224 PRK13111 trpA tryptophan synth 32.7 63 0.0014 29.5 4.1 36 56-94 199-235 (258)
225 cd01465 vWA_subgroup VWA subgr 32.6 1.4E+02 0.0031 23.9 5.9 32 57-88 98-139 (170)
226 PRK14905 triosephosphate isome 32.5 1.5E+02 0.0033 28.4 6.8 37 55-92 211-247 (355)
227 PRK06843 inosine 5-monophospha 32.3 3.2E+02 0.0068 26.8 9.1 40 57-98 256-296 (404)
228 cd06318 PBP1_ABC_sugar_binding 31.6 2.2E+02 0.0048 24.4 7.3 63 12-85 22-87 (282)
229 PRK08673 3-deoxy-7-phosphohept 31.5 1.1E+02 0.0023 29.3 5.5 77 5-93 106-189 (335)
230 PRK13585 1-(5-phosphoribosyl)- 31.4 1.9E+02 0.004 25.3 6.8 75 6-92 32-110 (241)
231 COG0069 GltB Glutamate synthas 31.2 46 0.00099 33.4 3.1 65 30-108 352-419 (485)
232 cd00887 MoeA MoeA family. Memb 31.1 2.5E+02 0.0055 26.9 8.2 70 7-87 196-269 (394)
233 cd06299 PBP1_LacI_like_13 Liga 31.1 2.7E+02 0.0059 23.5 7.8 63 14-86 24-86 (265)
234 PRK13397 3-deoxy-7-phosphohept 31.0 1.3E+02 0.0028 27.6 5.8 76 6-93 29-111 (250)
235 cd06297 PBP1_LacI_like_12 Liga 30.4 2.8E+02 0.0061 23.9 7.8 64 12-85 22-85 (269)
236 PRK11572 copper homeostasis pr 30.3 89 0.0019 28.6 4.6 55 23-77 56-112 (248)
237 cd01475 vWA_Matrilin VWA_Matri 30.3 1.1E+02 0.0023 26.6 5.0 33 56-88 109-145 (224)
238 PRK10550 tRNA-dihydrouridine s 30.0 2.1E+02 0.0046 26.7 7.2 40 7-46 118-160 (312)
239 cd01471 vWA_micronemal_protein 29.6 1.7E+02 0.0036 24.2 6.0 37 54-90 107-149 (186)
240 TIGR02495 NrdG2 anaerobic ribo 29.6 2.8E+02 0.0062 23.0 7.4 61 11-78 52-112 (191)
241 cd07410 MPP_CpdB_N Escherichia 29.5 4.1E+02 0.0089 23.7 9.0 95 3-111 27-139 (277)
242 cd06285 PBP1_LacI_like_7 Ligan 29.3 3.3E+02 0.0071 23.2 8.0 66 12-87 22-87 (265)
243 PRK06552 keto-hydroxyglutarate 29.3 2.8E+02 0.006 24.5 7.5 25 7-31 26-50 (213)
244 cd00886 MogA_MoaB MogA_MoaB fa 29.2 1.8E+02 0.004 23.8 6.0 7 40-46 26-32 (152)
245 PRK07226 fructose-bisphosphate 29.1 2.8E+02 0.0061 25.0 7.8 36 57-94 196-238 (267)
246 PRK10703 DNA-binding transcrip 28.9 3.2E+02 0.007 24.4 8.2 28 60-87 120-148 (341)
247 COG2846 Regulator of cell morp 28.8 43 0.00092 30.0 2.2 41 205-245 85-129 (221)
248 PRK05660 HemN family oxidoredu 28.7 2.1E+02 0.0046 27.2 7.2 70 20-89 57-128 (378)
249 PF13380 CoA_binding_2: CoA bi 28.4 2.8E+02 0.0061 21.7 6.8 68 8-80 16-104 (116)
250 PRK15492 triosephosphate isome 28.3 1.6E+02 0.0035 27.0 6.0 48 38-90 197-244 (260)
251 TIGR02134 transald_staph trans 28.3 1.2E+02 0.0027 27.4 5.2 46 25-79 146-193 (236)
252 TIGR01302 IMP_dehydrog inosine 28.3 3.7E+02 0.008 26.3 8.9 40 57-98 327-367 (450)
253 PLN02549 asparagine synthase ( 28.2 1.4E+02 0.0031 30.4 6.2 53 34-88 205-269 (578)
254 cd01458 vWA_ku Ku70/Ku80 N-ter 28.0 1.9E+02 0.0041 24.9 6.2 57 29-89 105-173 (218)
255 TIGR00381 cdhD CO dehydrogenas 27.9 2.6E+02 0.0057 27.4 7.6 51 16-76 150-211 (389)
256 PTZ00333 triosephosphate isome 27.7 2E+02 0.0042 26.3 6.4 36 56-92 206-241 (255)
257 cd06295 PBP1_CelR Ligand bindi 27.6 3.1E+02 0.0067 23.5 7.5 63 12-86 33-95 (275)
258 PF02581 TMP-TENI: Thiamine mo 27.5 31 0.00067 29.1 1.1 29 57-87 149-177 (180)
259 PRK08207 coproporphyrinogen II 27.4 1.8E+02 0.004 28.9 6.7 68 20-87 217-288 (488)
260 PLN02898 HMP-P kinase/thiamin- 27.3 65 0.0014 31.8 3.5 39 56-94 443-482 (502)
261 cd01480 vWA_collagen_alpha_1-V 27.2 2.6E+02 0.0056 23.4 6.7 36 53-88 107-150 (186)
262 cd06312 PBP1_ABC_sugar_binding 27.1 2.7E+02 0.0059 23.9 7.1 62 15-85 26-89 (271)
263 PRK12928 lipoyl synthase; Prov 27.1 3.3E+02 0.0071 25.2 7.9 74 6-86 90-171 (290)
264 PRK00876 nadE NAD synthetase; 26.9 1.5E+02 0.0034 28.0 5.8 57 30-89 10-68 (326)
265 cd02067 B12-binding B12 bindin 26.8 2.9E+02 0.0064 21.2 7.6 12 11-22 19-30 (119)
266 COG4302 EutC Ethanolamine ammo 26.8 51 0.0011 30.5 2.4 64 22-92 132-202 (294)
267 PRK12376 putative translaldola 26.8 1.5E+02 0.0033 26.8 5.5 45 26-79 147-193 (236)
268 TIGR03151 enACPred_II putative 26.4 76 0.0016 29.5 3.6 38 57-96 161-199 (307)
269 PF13519 VWA_2: von Willebrand 26.3 1.3E+02 0.0029 23.6 4.6 37 55-91 99-139 (172)
270 smart00500 SFM Splicing Factor 26.3 45 0.00097 22.5 1.5 21 67-87 3-23 (44)
271 cd01472 vWA_collagen von Wille 26.3 1.4E+02 0.003 24.2 4.8 36 54-89 102-141 (164)
272 PF02057 Glyco_hydro_59: Glyco 26.2 1E+02 0.0022 32.2 4.7 40 22-68 176-215 (669)
273 COG0149 TpiA Triosephosphate i 26.1 2.1E+02 0.0045 26.3 6.2 56 31-92 181-236 (251)
274 PLN02389 biotin synthase 26.1 5E+02 0.011 25.0 9.2 72 5-86 118-194 (379)
275 TIGR01768 GGGP-family geranylg 26.0 3.2E+02 0.0069 24.6 7.3 35 57-93 179-214 (223)
276 cd06267 PBP1_LacI_sugar_bindin 26.0 3.8E+02 0.0083 22.2 7.7 63 15-87 25-87 (264)
277 COG1059 Thermostable 8-oxoguan 26.0 65 0.0014 28.7 2.8 57 10-88 75-131 (210)
278 cd06293 PBP1_LacI_like_11 Liga 25.9 3.4E+02 0.0075 23.1 7.5 63 13-86 23-86 (269)
279 cd06320 PBP1_allose_binding Pe 25.9 2.8E+02 0.006 23.8 6.9 64 13-85 23-89 (275)
280 cd06274 PBP1_FruR Ligand bindi 25.8 3.3E+02 0.0072 23.1 7.4 65 13-87 23-87 (264)
281 cd06310 PBP1_ABC_sugar_binding 25.8 2.8E+02 0.0061 23.7 6.9 62 15-85 25-89 (273)
282 PRK05286 dihydroorotate dehydr 25.8 1.3E+02 0.0027 28.4 5.0 34 57-92 289-323 (344)
283 cd01482 vWA_collagen_alphaI-XI 25.7 1.2E+02 0.0026 24.7 4.4 35 54-88 102-140 (164)
284 cd06270 PBP1_GalS_like Ligand 25.5 4.1E+02 0.0088 22.6 7.9 30 57-86 57-86 (268)
285 TIGR00343 pyridoxal 5'-phospha 25.5 2.7E+02 0.0058 26.2 6.9 36 57-94 197-235 (287)
286 PRK09057 coproporphyrinogen II 25.4 3.1E+02 0.0067 26.0 7.6 70 20-89 54-125 (380)
287 PF05985 EutC: Ethanolamine am 25.2 38 0.00082 30.9 1.3 33 35-72 87-119 (237)
288 TIGR00737 nifR3_yhdG putative 25.1 2.5E+02 0.0053 25.9 6.7 33 58-92 193-227 (319)
289 cd01450 vWFA_subfamily_ECM Von 24.8 1.2E+02 0.0026 23.7 4.0 35 54-88 102-142 (161)
290 PRK05465 ethanolamine ammonia- 24.6 90 0.0019 28.9 3.6 43 24-73 85-127 (260)
291 PF00532 Peripla_BP_1: Peripla 24.4 2.1E+02 0.0044 25.7 6.0 62 13-85 25-86 (279)
292 TIGR00419 tim triosephosphate 24.3 1E+02 0.0022 27.3 3.8 35 56-91 168-202 (205)
293 PRK00549 competence damage-ind 24.1 1.5E+02 0.0033 28.8 5.4 50 7-67 21-70 (414)
294 cd06321 PBP1_ABC_sugar_binding 24.1 3.2E+02 0.0068 23.4 6.9 66 12-86 22-90 (271)
295 PRK00748 1-(5-phosphoribosyl)- 24.1 2.5E+02 0.0054 24.2 6.3 72 7-93 31-109 (233)
296 TIGR00272 DPH2 diphthamide bio 24.1 1E+02 0.0022 31.0 4.2 52 21-84 282-336 (496)
297 cd04732 HisA HisA. Phosphorib 23.6 2.5E+02 0.0055 24.2 6.2 72 7-93 30-108 (234)
298 PRK03512 thiamine-phosphate py 23.6 95 0.0021 27.3 3.5 37 56-94 157-193 (211)
299 cd06292 PBP1_LacI_like_10 Liga 23.5 3.4E+02 0.0073 23.1 7.0 61 14-85 24-90 (273)
300 cd02929 TMADH_HD_FMN Trimethyl 23.4 3.7E+02 0.008 25.6 7.7 36 57-93 289-325 (370)
301 KOG0677 Actin-related protein 23.3 49 0.0011 31.1 1.7 28 3-31 131-158 (389)
302 PRK15108 biotin synthase; Prov 23.2 6.2E+02 0.013 23.9 9.1 70 6-86 79-152 (345)
303 TIGR03572 WbuZ glycosyl amidat 22.9 2.3E+02 0.005 24.6 5.8 72 7-93 31-109 (232)
304 PRK09249 coproporphyrinogen II 22.9 4E+02 0.0087 25.9 8.1 70 20-89 101-172 (453)
305 PF03437 BtpA: BtpA family; I 22.7 1.4E+02 0.0029 27.5 4.4 32 58-92 201-232 (254)
306 PRK07360 FO synthase subunit 2 22.6 2.6E+02 0.0056 26.6 6.5 68 6-84 94-177 (371)
307 cd03466 Nitrogenase_NifN_2 Nit 22.5 4.7E+02 0.01 25.3 8.3 62 6-78 310-371 (429)
308 cd01540 PBP1_arabinose_binding 22.4 3.4E+02 0.0073 23.5 6.8 62 13-85 23-86 (289)
309 cd06271 PBP1_AglR_RafR_like Li 22.3 4.4E+02 0.0096 22.2 7.4 63 13-85 27-89 (268)
310 TIGR00322 diphth2_R diphthamid 22.0 1.2E+02 0.0027 28.6 4.2 50 23-84 235-287 (332)
311 PRK09058 coproporphyrinogen II 22.0 3.5E+02 0.0075 26.5 7.4 66 22-89 115-184 (449)
312 PF01180 DHO_dh: Dihydroorotat 21.9 2.2E+02 0.0049 25.8 5.8 50 34-92 228-278 (295)
313 TIGR03682 arCOG04112 arCOG0411 21.8 1.3E+02 0.0029 28.1 4.3 50 21-84 213-266 (308)
314 COG3693 XynA Beta-1,4-xylanase 21.8 57 0.0012 31.3 1.8 24 70-93 209-232 (345)
315 PF00218 IGPS: Indole-3-glycer 21.7 88 0.0019 28.6 3.0 37 57-95 210-246 (254)
316 PRK05799 coproporphyrinogen II 21.5 4.4E+02 0.0096 24.7 7.8 77 9-86 37-117 (374)
317 cd00198 vWFA Von Willebrand fa 21.5 2.8E+02 0.006 20.9 5.5 35 54-88 100-141 (161)
318 PRK05458 guanosine 5'-monophos 21.5 5.8E+02 0.013 24.2 8.5 77 6-89 96-174 (326)
319 cd06302 PBP1_LsrB_Quorum_Sensi 21.2 3.5E+02 0.0075 23.9 6.8 62 15-85 25-88 (298)
320 PF07485 DUF1529: Domain of Un 21.1 1.6E+02 0.0034 24.1 4.1 35 11-45 73-122 (123)
321 cd01575 PBP1_GntR Ligand-bindi 21.1 5E+02 0.011 21.8 7.8 63 12-85 22-85 (268)
322 cd06326 PBP1_STKc_like Type I 21.1 4.4E+02 0.0095 23.4 7.4 65 18-92 38-106 (336)
323 PRK03673 hypothetical protein; 21.0 2.4E+02 0.0053 27.4 6.0 51 7-68 22-72 (396)
324 cd01538 PBP1_ABC_xylose_bindin 21.0 4E+02 0.0086 23.3 7.1 62 13-85 23-87 (288)
325 PF13768 VWA_3: von Willebrand 20.9 3.5E+02 0.0077 21.4 6.2 37 53-89 94-136 (155)
326 PRK12595 bifunctional 3-deoxy- 20.9 2.1E+02 0.0045 27.4 5.5 76 6-93 132-214 (360)
327 KOG2799 Succinyl-CoA synthetas 20.9 1.8E+02 0.0038 28.6 4.9 45 10-70 364-408 (434)
328 cd01467 vWA_BatA_type VWA BatA 20.7 3.4E+02 0.0073 22.0 6.1 34 56-89 103-143 (180)
329 cd03522 MoeA_like MoeA_like. T 20.5 5E+02 0.011 24.4 7.8 8 39-46 184-191 (312)
330 PRK01033 imidazole glycerol ph 20.4 3.4E+02 0.0074 24.3 6.6 35 56-92 195-231 (258)
331 PRK08208 coproporphyrinogen II 20.3 2.1E+02 0.0046 27.7 5.5 66 24-89 94-162 (430)
332 TIGR00539 hemN_rel putative ox 20.2 6.6E+02 0.014 23.5 8.7 68 22-89 52-121 (360)
333 PF03599 CdhD: CO dehydrogenas 20.2 1.2E+02 0.0026 29.6 3.7 47 19-76 69-116 (386)
334 PRK13685 hypothetical protein; 20.2 1.2E+02 0.0027 28.0 3.7 33 57-89 195-239 (326)
335 cd06301 PBP1_rhizopine_binding 20.1 5E+02 0.011 22.0 7.4 61 15-85 25-88 (272)
336 cd01537 PBP1_Repressors_Sugar_ 20.1 5E+02 0.011 21.4 7.5 64 15-88 25-89 (264)
337 PRK08255 salicylyl-CoA 5-hydro 20.0 4.1E+02 0.0089 27.9 7.8 36 57-93 687-723 (765)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=3.5e-72 Score=548.76 Aligned_cols=252 Identities=89% Similarity=1.439 Sum_probs=244.1
Q ss_pred CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
++||++|||+||++|+++|+++.|||+|||||++||+++|++||+++|+|+++|++++||++||||||++|.+|.++|++
T Consensus 292 l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~~ 371 (545)
T PLN02885 292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGHE 371 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCce
Q 025365 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (254)
Q Consensus 81 id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~ 160 (254)
||+|||||+|+||.++|++|||||||++||+|++|+|++++|.|+||+|+|||+||++|++.+|+|++.+|++|..++++
T Consensus 372 id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 451 (545)
T PLN02885 372 IDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERI 451 (545)
T ss_pred ccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999998779999999999999767678899
Q ss_pred eecCCCCccccccccccccccceeeeeeCCC--CeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCHHHHH
Q 025365 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSS--DKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYD 238 (254)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~--G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~~L~~ 238 (254)
.|+||+++|+++.+.++.+++||++|| ++ |+++++.|+|.+||+|++++|++|||+++|+.||++|+|++|++|++
T Consensus 452 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~--~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~~y~V~~s~~l~~ 529 (545)
T PLN02885 452 LCRHPFNESKRAYVVPQRVEELLKCYW--DGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVSVSAKLYD 529 (545)
T ss_pred EEeCCccchheeeeccccHHhhhHHHe--ECCCCcCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCccceeccCHHHHH
Confidence 999999999999999999999999999 66 88889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCCCC
Q 025365 239 FIHFLWLNEAPVGELQ 254 (254)
Q Consensus 239 l~~~L~~~~~~~~~~~ 254 (254)
++++||++++|++|++
T Consensus 530 ~~~~l~~~~~~~~~~~ 545 (545)
T PLN02885 530 FIHFLWLNEAPVGELQ 545 (545)
T ss_pred HHHHHHHhcCccccCC
Confidence 9999999999999875
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=3.9e-58 Score=444.34 Aligned_cols=222 Identities=41% Similarity=0.596 Sum_probs=212.1
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcc
Q 025365 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (254)
Q Consensus 2 ~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~i 81 (254)
+|||+||++||++|.+ |.++.|||+|||||.++++++|++||++ |++++||++||||||++|.+|..+|+++
T Consensus 239 ~~~i~~~~~~~~~l~~-~~~~~gVRlDSGDl~~l~~~vr~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~i 310 (464)
T PRK09243 239 KSGVPNAIKVAKELGD-GIELGGVRIDSGDLAYLSKKVRKMLDEA-------GFTDTKIVASNDLDEYTIASLKLQGAPI 310 (464)
T ss_pred HhHHHHHHHHHHHhhc-cccCceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHhCCCCc
Confidence 4799999999999877 7889999999999999999999999998 8999999999999999999999999999
Q ss_pred cEEeecCcccccCCCCccceEEEEeEEcCc----cccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCC
Q 025365 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQ----PRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVG 157 (254)
Q Consensus 82 d~fGVGT~l~t~~~~p~l~~vyKlv~~~g~----p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~ 157 (254)
|+|||||+|+|+.++|+++||||||+++|. |++|+|++++|.|+||+|+|||+|+++|.+.+|+|++.+|++ +
T Consensus 311 d~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R~~~~~~~~~~d~i~~~~e~~---~ 387 (464)
T PRK09243 311 DGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYRIYDKGGKAEADVITLADEEE---E 387 (464)
T ss_pred eEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEEEEcCCCCcceEEEeccCCCc---c
Confidence 999999999999999999999999999985 999999999999999999999999877899999999999853 6
Q ss_pred CceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCHHH
Q 025365 158 ERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKL 236 (254)
Q Consensus 158 ~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~~L 236 (254)
.++.|+||.++|+++.+.++.+++||+||| ++|+++.+.|++++||+|++++|++||++++|+.||++|+|.+|++|
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~G~~~~~~~~l~~~r~~~~~~l~~l~~~~~~l~~p~~y~v~~s~~l 464 (464)
T PRK09243 388 EPLKMFHPVHTYKSKTVKNFDAEPLLVPVM--ENGKRVYELPSLEEIRAYAAAQLASLPEEYKRLLNPHAYPVDLSQAL 464 (464)
T ss_pred ccceeecccchhhhhcccccchhhhhHHHh--cCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCCceeEEecCCC
Confidence 678899999999999999999999999999 99999999999999999999999999999999999999999999875
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=7.7e-57 Score=432.78 Aligned_cols=215 Identities=41% Similarity=0.646 Sum_probs=200.5
Q ss_pred CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
++||++||++++++|++.| .+.|||+|||||.++++++|++||++ |++++||++||||||++|.+|.++|++
T Consensus 229 ~~sg~~~~~~~~~~l~~~~-~~~gVR~DSGD~~~l~~~vr~~ld~~-------G~~~vkIi~S~gLde~~i~~l~~~g~~ 300 (443)
T TIGR01513 229 LRSGLPNAIAVAKELGEQG-KVVGVRIDSGDLLYLSKQARKQLDAA-------GLTQVKIVVSNDLDENSIAALKAEGAP 300 (443)
T ss_pred chhhHHHHHHHHHHHhhhc-CceeEecCCCCHHHHHHHHHHHHHHc-------CCCCcEEEEeCCCCHHHHHHHHHCCCc
Confidence 3589999999999997766 67899999999999999999999998 899999999999999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCce
Q 025365 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (254)
Q Consensus 81 id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~ 160 (254)
+|+|||||+|+||.++|+++||||||++||+|++|+|++++|.|+||+|+|||+|+.+|.+..|+|++.+|+++ .+++.
T Consensus 301 ~d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~~~~g~~~~d~i~~~~e~~~-~~~~~ 379 (443)
T TIGR01513 301 IDVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELTLADEPIE-DLNQE 379 (443)
T ss_pred eeEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEeCCCCCeeeEEEEecCCCCc-cccce
Confidence 99999999999999999999999999999999999999999999999999999998678999999999998643 45667
Q ss_pred eecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCHHH
Q 025365 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKL 236 (254)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~~L 236 (254)
.|+||. ...++||++|| ++|+++.+.||+++||+|+++||++||++++|+.||++|+|.+|++|
T Consensus 380 ~~~~~~----------~~~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~rl~~p~~y~v~~s~~l 443 (443)
T TIGR01513 380 KCTPVF----------APVEPLLRLVM--KNGQRVRPLPSLAEIRARAREQLSKLPPEYLRLLNPHVYPVSLSPRL 443 (443)
T ss_pred eeecCC----------cchhcchhhee--ECCEEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCccceeeccCCC
Confidence 788885 24589999999 99999999899999999999999999999999999999999999875
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.7e-55 Score=422.21 Aligned_cols=208 Identities=34% Similarity=0.491 Sum_probs=194.9
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
|++|||+|+++|.+ |.++.|||+|||||.++++++|++||++ |+++++|++||||||++|.+|.++|+++|+
T Consensus 234 ~i~~ai~v~~~l~~-~~~~~gVRlDSGDl~~l~~~~r~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~id~ 305 (443)
T PRK12484 234 GVRNAIEVAKELGN-RFDPRGVRLDSGDLAELSKATRAILDAA-------GLEQVKIVASGGLDEYRIAALLAAGAPIDG 305 (443)
T ss_pred HHHHHHHHHHHhhc-ccCcceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCcCeE
Confidence 89999999999966 6888999999999999999999999998 899999999999999999999999999999
Q ss_pred EeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCceeec
Q 025365 84 FGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCR 163 (254)
Q Consensus 84 fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~~~~ 163 (254)
|||||+|+|+.++|+++||||||+++|.|++|+|+ +|.|+||+|+|||+|+. +.+.+|+|++.+|+++. +
T Consensus 306 fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~~-~~~~~d~i~~~~e~~~~-~------ 375 (443)
T PRK12484 306 FGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYEH-GTACGDVIGLHTENIPD-G------ 375 (443)
T ss_pred EeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcCC-CCceeEEEEecCCCCCC-c------
Confidence 99999999999999999999999999999999986 99999999999999974 44788999999985332 1
Q ss_pred CCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCHHHHHHHHHH
Q 025365 164 HPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFL 243 (254)
Q Consensus 164 ~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~~L~~l~~~L 243 (254)
.++||+||| ++|+++.+.||+++||+|+++++++||++++|+.||++|+|.+|++|++++++|
T Consensus 376 ---------------~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~~l~~p~~y~v~~s~~l~~~~~~l 438 (443)
T PRK12484 376 ---------------REPLLVPVM--TNGRRIQHAPTLDGARDWCEAQLAALPPEARRLVDPVAVSVTLSGELARLRHAD 438 (443)
T ss_pred ---------------ccchhhhhe--ECCEEeCCCCCHHHHHHHHHHHHHhCCHHHHhccCCccceeeeCHHHHHHHHHH
Confidence 258999999 899999988999999999999999999999999999999999999999999999
Q ss_pred HHc
Q 025365 244 WLN 246 (254)
Q Consensus 244 ~~~ 246 (254)
+.+
T Consensus 439 ~~~ 441 (443)
T PRK12484 439 TAE 441 (443)
T ss_pred HHh
Confidence 964
No 5
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.2e-36 Score=288.13 Aligned_cols=173 Identities=19% Similarity=0.270 Sum_probs=147.9
Q ss_pred chHHHHHHHHHHhh----cCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CceEEEEeCCCCHHHHHH-
Q 025365 4 GVPNFCAVALALND----LGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA- 73 (254)
Q Consensus 4 Gv~nai~va~~l~~----~G~~~~gVRlDSGDl~~ls~~~r~~ld~~-g~~l~~~g~----~~vkI~~S~~lde~~i~~- 73 (254)
||+|+ ++.+|++ .|.++ |||+|||||.++++++|++||++ |.++|.+|| ++|+||+||||||+.|.+
T Consensus 270 ~i~~i--~~~~L~~~i~~~~~~l-~VR~DSGD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~i 346 (463)
T PRK09198 270 AITEP--WGGELKDEILARGGTL-VIRPDSGDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAI 346 (463)
T ss_pred HHHHH--HHHHHhhhhhccCCcE-EEECCCCCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHH
Confidence 78884 4445543 57788 99999999999999999999999 999999998 499999999999999999
Q ss_pred ---HhhcCCccc--EEeecCcccccCCCCccceEEEEeEE--cCc--cccccC-CCCCccCCCcccceeeecCCCCceeE
Q 025365 74 ---LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPCKKRSYRLYGKEGYPLV 143 (254)
Q Consensus 74 ---l~~~g~~id--~fGVGT~l~t~~~~p~l~~vyKlv~~--~g~--p~~K~S-~~~~K~t~PG~K~vyR~~d~~g~~~~ 143 (254)
|..+|+++| +|||||+|+|+.++|+++||||||++ ||+ |++|-+ ++.||.|.||+|+|||. +|.+
T Consensus 347 l~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~gK~S~~G~k~v~r~---~~~~-- 421 (463)
T PRK09198 347 LEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQGKKSKKGRLKLIKD---NGEY-- 421 (463)
T ss_pred HHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCCCCcCccceeEEEEc---CCcc--
Confidence 667899999 99999999999999999999999966 664 999976 66799999999999997 3433
Q ss_pred EEEecCCCCCCCCCCceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHH
Q 025365 144 DIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ 211 (254)
Q Consensus 144 D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~ 211 (254)
|++.+.++... .++||++|| +||+++.+ +++++||+|+.+.
T Consensus 422 ~~v~~~~~~~~------------------------~~~lL~~v~--~~G~l~~~-~~l~eiR~r~~~~ 462 (463)
T PRK09198 422 RTVDLDEAGDE------------------------NDDLLQTVF--ENGKLLVE-YSLAEIRARLHAA 462 (463)
T ss_pred eEEeccccCCC------------------------ccchhhhhe--eCCEECCC-CCHHHHHHHHhhc
Confidence 67776665311 258999999 99999985 6899999999764
No 6
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=100.00 E-value=2.6e-35 Score=284.33 Aligned_cols=176 Identities=23% Similarity=0.287 Sum_probs=150.1
Q ss_pred chHHHH-HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CceEEEEeCCCCHHHHHHHh--
Q 025365 4 GVPNFC-AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDALN-- 75 (254)
Q Consensus 4 Gv~nai-~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~-g~~l~~~g~----~~vkI~~S~~lde~~i~~l~-- 75 (254)
||+|+| +|+.++.+.|.++ |||+|||||++++++++++|++. |-++|.+|| ++++||+||||||++|++|+
T Consensus 276 ~v~~~i~~l~~~i~~~~~~l-~IR~DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il~~ 354 (470)
T PHA02594 276 AVTEILPELKDEIMARGGKL-VIRPDSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGITLERINRILTR 354 (470)
T ss_pred HHHHHHHHHHHHHHhCCCcE-EEeCCCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCCHHHHHHHHHH
Confidence 899999 9999987778887 99999999999999999999877 888899999 99999999999999999955
Q ss_pred --hcCC--cccEEeecCcccccCCCCccceEEEEeEE--cCc--cccccC-CCCCccCCCcccceeeecCCCCce-eEEE
Q 025365 76 --KQGH--EVDAFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPCKKRSYRLYGKEGYP-LVDI 145 (254)
Q Consensus 76 --~~g~--~id~fGVGT~l~t~~~~p~l~~vyKlv~~--~g~--p~~K~S-~~~~K~t~PG~K~vyR~~d~~g~~-~~D~ 145 (254)
++|+ ++++|||||+|+|+.++|+++|||||+++ ||+ |++|.+ ++.||.|.||+|+ |.++ +|.+ ..|.
T Consensus 355 L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~gK~S~~Gr~~--~~~~-~g~~~~~~~ 431 (470)
T PHA02594 355 MKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDEGKKSKKGRLA--RVKD-GGSFKTVDG 431 (470)
T ss_pred HHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCCCCccccceeE--EEEc-CCceeEeee
Confidence 6894 57799999999999999999999999988 465 779876 6779999999999 4545 5655 4455
Q ss_pred EecCCCCCCCCCCceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHH
Q 025365 146 MTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ 211 (254)
Q Consensus 146 i~l~~e~~~~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~ 211 (254)
+ ..|..+ + .++||++|| +||+++.+ +||++||+|++++
T Consensus 432 ~--~~e~~~--~---------------------~~~lL~~v~--~~G~~~~~-~sl~eiR~r~~~~ 469 (470)
T PHA02594 432 L--EEQSEA--D---------------------LNDALVTYF--DDGKLVRY-QSLAEIRERSDIQ 469 (470)
T ss_pred c--cccccc--c---------------------ccchhheee--ECCEECCC-CCHHHHHHHHHhc
Confidence 5 222111 1 257999999 99999987 8999999999875
No 7
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-33 Score=269.76 Aligned_cols=159 Identities=34% Similarity=0.448 Sum_probs=136.4
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCc
Q 025365 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHE 80 (254)
Q Consensus 2 ~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~ 80 (254)
.+|+.|++.++.++.. ..+.|||+|||||.++++++|++||+. |+++++||+| |++||..|..|+.+|++
T Consensus 246 ~~~~~~~~~~~~~~~~--~~~~GVR~DSGd~~~~~~kvr~~ld~~-------G~~~~~Ii~Sdg~lde~~i~~l~~~g~~ 316 (405)
T COG1488 246 DDAFLNAIKVAKALGD--KRLDGVRLDSGDPRELSEKVRAHLDKL-------GYDPVKIIVSDGLLDEKIIALLRAFGAR 316 (405)
T ss_pred hHHHHHhHHHHHhccc--ccceEEECCCCCHHHHHHHHHHHHHHc-------CCCceEEEEeCCcchHHHHHHHHHhCCC
Confidence 3589999999988743 478899999999999999999999998 9999999999 99999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCce
Q 025365 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (254)
Q Consensus 81 id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~ 160 (254)
+|+|||||+|+|..++|++++||||||+||.|++|+|++ ||.|++||.++.. . +.....++. .
T Consensus 317 ~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~------Pgkk~~~r~~~~~--~--~~~~~~~~~-~------ 379 (405)
T COG1488 317 NDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKN------PGKKQVYRSAFVR--E--LLVVFGDEI-T------ 379 (405)
T ss_pred ccEeccchhhccCCCCCcceeEEEEEEECCccceeecCC------Cccceeecchhhh--h--hheeccccc-c------
Confidence 999999999999999999999999999999999999874 8999999987411 0 011111110 0
Q ss_pred eecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHH
Q 025365 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCI 209 (254)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~ 209 (254)
.++||++|| ++| ++++ +|++||+|++
T Consensus 380 ------------------~~~l~~~~~--~~G-~~~~--~l~~ir~~~~ 405 (405)
T COG1488 380 ------------------YEPLLVKVF--ENG-LLYD--SLDEIRERAL 405 (405)
T ss_pred ------------------chhHHHHHH--hCC-eecC--CHHHHHHhhC
Confidence 178999999 999 7877 9999999973
No 8
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=3.3e-32 Score=250.69 Aligned_cols=167 Identities=64% Similarity=0.949 Sum_probs=153.3
Q ss_pred CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
++||++|+++|+.++... |||+|||||+++|+++|+++-..+..+. +++..+-+.+||+++|.+|..+.++|+.
T Consensus 251 ~~~~~~nf~Av~lal~~~-----GvR~DSGdl~~~skkvr~~y~~v~~~~K-~~~~~m~~~a~N~~ne~ti~~lnkq~~e 324 (420)
T KOG2511|consen 251 FLKSFPNFCAVALALNDL-----GVRQDSGDLAEYSKKVRKHYCDVERDPK-PSKGIMYSDALNVLNEITIDALNKQGGE 324 (420)
T ss_pred HHhcCCccchhhhhhhhc-----ceeccCCCHHHHHHHHHHHHHHhhccCC-CcceEEEEecccchhHHHHHHHHhcCCc
Confidence 368999999999998665 6999999999999999999999865554 5566777889999999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCce
Q 025365 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (254)
Q Consensus 81 id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~ 160 (254)
+|+|||||+|+|| -|+ +.+| ||+|+|..|.|+||.|.+||++.++|.+.+|++.+++|++|..++.+
T Consensus 325 ~~aFGIGTnl~t~-~q~-----------~sqP-iKLseDvtkvSiP~~K~~~RLfg~eG~plvdi~~~~~ep~p~~gq~l 391 (420)
T KOG2511|consen 325 VDAFGIGTNLTTD-FQK-----------NSQP-IKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQVL 391 (420)
T ss_pred eeeeccccccccc-ccc-----------ccCC-cccccccceeccccchhheehhccCCchhhhHhhccCCCCCCCCceE
Confidence 9999999999998 455 6789 99999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccccccccccccccceeeee
Q 025365 161 LCRHPFNESKRAYVVPQKVEELLKCYW 187 (254)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~ 187 (254)
.|.||+. .+++++.|..+++++..+|
T Consensus 392 ~~khp~~-~~~~~vip~~ve~llk~~w 417 (420)
T KOG2511|consen 392 RVKHPLN-SKRAYVIPQRVEELLKCYW 417 (420)
T ss_pred Eeecccc-ccccccchhhhHHHHHHHh
Confidence 9999999 7888888999999999998
No 9
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.97 E-value=1e-30 Score=247.25 Aligned_cols=112 Identities=29% Similarity=0.336 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC-CceE-EEEeCCCCHHHHHHHhh--cCC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMS-ITASNDLNEETLDALNK--QGH 79 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~-~~vk-I~~S~~lde~~i~~l~~--~g~ 79 (254)
|.++|++++.++ .+..+.|||+|||||.++++++|++||++ |+ +++| |++||||||++|.+|.+ +|+
T Consensus 258 ~t~~f~~~~~~~--~~~~~~GvR~DSGD~~~~~~k~r~~~~~~-------Gi~p~~K~iv~Sd~Lde~~i~~L~~~~~g~ 328 (377)
T cd01401 258 GTDAFLRDFDLY--FAKLFDGVRHDSGDPFEWGEKAIAHYEKL-------GIDPKTKTLVFSDGLDVEKALELYEYFKGR 328 (377)
T ss_pred CCHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHHcCC
Confidence 468999999873 45568999999999999999999999998 76 7888 99999999999999999 899
Q ss_pred cccEEeecCcccccCC----CCccceEEEEeEEcCccccccCCCCCccC
Q 025365 80 EVDAFGIGTYLVTCYA----QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (254)
Q Consensus 80 ~id~fGVGT~l~t~~~----~p~l~~vyKlv~~~g~p~~K~S~~~~K~t 124 (254)
++|+|||||+|+|+.+ +|++++|||||++||+|++|+|++++|.|
T Consensus 329 ~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~~g~P~~KlSd~~~K~t 377 (377)
T cd01401 329 IKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred cceeEecCcceecCCCcccCCCCcceEEEEEEECCcceeEecCCCccCC
Confidence 9999999999999887 89999999999999999999999999986
No 10
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.96 E-value=8.7e-30 Score=242.57 Aligned_cols=119 Identities=26% Similarity=0.287 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC--CceEEEEeCCCCHHHHHHHhhc--CC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF--EKMSITASNDLNEETLDALNKQ--GH 79 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~--~~vkI~~S~~lde~~i~~l~~~--g~ 79 (254)
+..+|++++.+. .+..+.|||+|||||.++++++|++||++ |+ ..++|++||||||++|.+|.++ |.
T Consensus 261 ~t~~fl~~f~~~--~~~~~~GvRlDSGD~~~~~~k~~~~~~~~-------G~dp~~k~Iv~S~~Lde~~i~~L~~~~~~~ 331 (400)
T PRK05321 261 GMDAFLRDFDLY--FAKLFDGLRHDSGDPIEWGEKAIAHYEKL-------GIDPRTKTLVFSDGLDFDKALELYRHFKGR 331 (400)
T ss_pred CcHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEeCCCCHHHHHHHHHHhcCC
Confidence 345778876432 46678999999999999999999999997 77 3567999999999999999986 56
Q ss_pred cccEEeecCcccccC-CCCccceEEEEeEEcCccccccCCCCCccCCCcccce
Q 025365 80 EVDAFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 131 (254)
Q Consensus 80 ~id~fGVGT~l~t~~-~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v 131 (254)
++|+|||||+|+|+. ++|++++|||||++||+|++|+|+++||.|.|...-+
T Consensus 332 i~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~~~~~ 384 (400)
T PRK05321 332 IKLSFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDDPEFL 384 (400)
T ss_pred CcceEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCCHHHH
Confidence 677999999999999 8999999999999999999999999999998876653
No 11
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.96 E-value=1.7e-29 Score=239.92 Aligned_cols=113 Identities=29% Similarity=0.292 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCC-CCceE-EEEeCCCCHHHHHHHhh--cCC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPD-FEKMS-ITASNDLNEETLDALNK--QGH 79 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g-~~~vk-I~~S~~lde~~i~~l~~--~g~ 79 (254)
+.++|++++.+..+. .+.|||+|||||.+|++++|++|+++ | .+++| |++||||||++|.+|.+ +|+
T Consensus 261 ~t~~f~~~~~~~~~~--~~~GvR~DSGD~~~~~~~~~~~~~~~-------gidp~~K~iv~Sd~Lde~~i~~L~~~~~g~ 331 (394)
T TIGR01514 261 TTDAFLRDFRPPFAD--AYDGLRHDSGDPVEWGDKAIAHYQKL-------GIDPKSKIIIFSDSLDVEKAIELSHYFKGR 331 (394)
T ss_pred CCHHHHHHHHHHhcc--cCCEEecCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHhcCC
Confidence 458999998654343 45899999999999999999999998 7 47888 67899999999999999 999
Q ss_pred cccEEeecCcccccCC-CCccceEEEEeEEcCccccccCCCCCccCC
Q 025365 80 EVDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVSI 125 (254)
Q Consensus 80 ~id~fGVGT~l~t~~~-~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~ 125 (254)
++|+|||||+|+|+.+ +|++++|||||+++|+|++|+|++++|.|.
T Consensus 332 ~~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t~ 378 (394)
T TIGR01514 332 VKASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTMG 378 (394)
T ss_pred CceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccCC
Confidence 9999999999999998 999999999999999999999999999993
No 12
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.96 E-value=2e-29 Score=226.42 Aligned_cols=131 Identities=40% Similarity=0.534 Sum_probs=111.3
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC---CceEEEEeCCCCHHHHHHHhhcC
Q 025365 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF---EKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 2 ~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~---~~vkI~~S~~lde~~i~~l~~~g 78 (254)
.++++++|.+...+++++ ++.|||+|||||.++++++|++|+++ .|++|+ ++++|++||+|||++|.+|.+++
T Consensus 94 ~~~L~~~i~~~~~~~~~~-~~~gvR~DSGD~~~~~~~~r~~f~~~---~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~ 169 (245)
T PF04095_consen 94 GIALKDAIGTRGFLKDFG-RFLGVRPDSGDPAELSEKLRKIFDEA---VGIKGYKVLPSKKIIASDGLDEEKIEELLEQG 169 (245)
T ss_dssp CEEEHHHHTHHHHHHCSS-HSEEEEE-SS-HHHHHHHHHHHHHHT---ETTTGGEE-TCSEEEEESS-SHHHHHHHHHHH
T ss_pred ccccchheeccchhcccc-cceeeecCCCChHHHHHHHHHHHHHH---hCCCCccccceEEEEEeCCCCHHHHHHHHHHh
Confidence 468999999999998887 67899999999999999999999996 577777 78899999999999999999988
Q ss_pred Cc---ccEEeecCcccccCCC---------CccceEEEEeEEcCccccccCCCCCccC---CCcccceeeecC
Q 025365 79 HE---VDAFGIGTYLVTCYAQ---------AALGCVFKLVEINKQPRIKLSEDVSKVS---IPCKKRSYRLYG 136 (254)
Q Consensus 79 ~~---id~fGVGT~l~t~~~~---------p~l~~vyKlv~~~g~p~~K~S~~~~K~t---~PG~K~vyR~~d 136 (254)
++ +|+|||||+|+||.++ |+++++||+++++|+|++|+|++.+|.| .++.+.+.|+|.
T Consensus 170 ~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~P~~K~S~~~~K~t~~~~~~~~~~k~vf~ 242 (245)
T PF04095_consen 170 AEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQPVIKLSDDSEKGTCGDPEGIKYLKRVFE 242 (245)
T ss_dssp CCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTEETTBGGSSTTGSSGGGHHHHHHHHHHEC
T ss_pred hcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCCCCccCCCCCCCCcCCCHHHHHHHHHHhC
Confidence 88 9999999999999999 5556666666778899999999999999 344666666663
No 13
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.94 E-value=6.7e-27 Score=222.49 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=111.8
Q ss_pred chHHHHHHHHH-HhhcCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CceEEEEeCCCCHHHHHH----
Q 025365 4 GVPNFCAVALA-LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA---- 73 (254)
Q Consensus 4 Gv~nai~va~~-l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~-g~~l~~~g~----~~vkI~~S~~lde~~i~~---- 73 (254)
+++|++.++++ +.+.|.++ +||+|||||.++++++|++||++ |.+.|.+|+ ++++||+||||||++|.+
T Consensus 268 ~~~~~~~~lk~~i~~~g~~l-viRpDSGD~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~ 346 (407)
T cd01569 268 ALTLWGPRLKDEILARGGTL-VIRPDSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILER 346 (407)
T ss_pred HHHHHHHHHHHHHHhcCCcE-EEECCCCCHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHH
Confidence 38999999998 45667887 99999999999999999999999 889999997 799999999999999996
Q ss_pred HhhcCCccc--EEeecCcccccCCCCccceEEEEeEE--cCc--cccccC-CCCCccCCCc
Q 025365 74 LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPC 127 (254)
Q Consensus 74 l~~~g~~id--~fGVGT~l~t~~~~p~l~~vyKlv~~--~g~--p~~K~S-~~~~K~t~PG 127 (254)
|.++|+++| +|||||+|+|+.++|+++|||||+++ ||+ |++|-+ +|.+|.+..|
T Consensus 347 L~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~~~v~K~P~td~~k~sk~g 407 (407)
T cd01569 347 LKAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKWRDVFKDPKTDPGKKSKKG 407 (407)
T ss_pred HHHCCCccccceEecCccceecCCCcccCceeEEEEEecCCeeeeeeeCCCCCCccccCCC
Confidence 666999999 99999999999999999999999988 454 999999 8888888654
No 14
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.93 E-value=1.9e-26 Score=214.94 Aligned_cols=98 Identities=60% Similarity=0.873 Sum_probs=94.8
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcc
Q 025365 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (254)
Q Consensus 2 ~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~i 81 (254)
+||+++|++++++|.+.|.++.|||+|||||.++++++|++||++ |+++++|++|||||+++|.+|.++|+++
T Consensus 230 ~~~~~~~l~~~~~l~~~~~~~~gvR~DSGd~~~~~~~~r~~l~~~-------G~~~~~Iv~Sdgld~~~i~~l~~~g~~~ 302 (327)
T cd01570 230 RSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEA-------GLTKVKIVASNDLDEYTIAALNAQGAPI 302 (327)
T ss_pred hhhHHHHHHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCee
Confidence 479999999999998889999999999999999999999999998 8899999999999999999999999999
Q ss_pred cEEeecCcccccCCCCccceEEEEe
Q 025365 82 DAFGIGTYLVTCYAQAALGCVFKLV 106 (254)
Q Consensus 82 d~fGVGT~l~t~~~~p~l~~vyKlv 106 (254)
|+|||||+|+|+.++|++++|||||
T Consensus 303 d~fGvGt~L~~~~~~~~l~~v~Klv 327 (327)
T cd01570 303 DAFGVGTRLVTSQSQPALGGVYKLV 327 (327)
T ss_pred EEEecCccccCCCCCcccCeeEecC
Confidence 9999999999999999999999997
No 15
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=4e-24 Score=201.02 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=94.6
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCC-CCh---------------------HHHHHHHHHHHHHHhHhhCCCCCCceEE
Q 025365 3 SGVPNFCAVALALNDLGYKAVGIRLDS-GDL---------------------AYLSCEARKFFRTIEKEFGVPDFEKMSI 60 (254)
Q Consensus 3 sGv~nai~va~~l~~~G~~~~gVRlDS-GDl---------------------~~ls~~~r~~ld~~g~~l~~~g~~~vkI 60 (254)
..+.+|++|+++| |.+++|||||| ||+ .++++++|+.||++ |+++++|
T Consensus 214 d~~~~al~~a~~~---g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~-------g~~~vkI 283 (352)
T PRK07188 214 DVITDSLKVAREF---GDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKALRKALDEN-------GGKHVKI 283 (352)
T ss_pred ccHHHHHHHHHHh---CCCccEEEeCCcchHhhhhcccccccccccccccccHHHHHHHHHHHhhC-------CCCCcEE
Confidence 4688999999876 88999999999 575 89999999999998 9999999
Q ss_pred EEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEEcCccccccCC
Q 025365 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSE 118 (254)
Q Consensus 61 ~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~ 118 (254)
++||||||+.|++|.++|+|||+|||||+|++|. .+|++|+|++||+|++|+..
T Consensus 284 ~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr 337 (352)
T PRK07188 284 IVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR 337 (352)
T ss_pred EEeCCCCHHHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC
Confidence 9999999999999999999999999999999975 78999999999999999954
No 16
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.83 E-value=1.2e-20 Score=176.57 Aligned_cols=93 Identities=40% Similarity=0.559 Sum_probs=87.3
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC--CceEEEEeCCCC-HHHHHHHhhcCC-
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF--EKMSITASNDLN-EETLDALNKQGH- 79 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~--~~vkI~~S~~ld-e~~i~~l~~~g~- 79 (254)
|+.+++++++++.+ +.++.|||+|||||.++++++|++||++ |+ ++++|++||||| |+.|+.+..++.
T Consensus 247 ~~~~~~~~~~~~~~-~~~~~gvR~DSGd~~~~~~~~~~~l~~~-------g~~~~~~~ii~sg~l~~~~~i~~~~~~~~~ 318 (343)
T cd01567 247 GFLNALKLAKALGA-GGGLLGVRLDSGDPVELIKKVRKHLDEL-------GIDLNKKKIIISGDLDTEEAIELLLEQGAS 318 (343)
T ss_pred HHHHHHHHHHhhcc-cCCCcEEECCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEECCCCHHHHHHHHHHcCCC
Confidence 78999999998866 5677899999999999999999999998 77 899999999999 999999999887
Q ss_pred cccEEeecCcccccCCCCccceEEE
Q 025365 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (254)
Q Consensus 80 ~id~fGVGT~l~t~~~~p~l~~vyK 104 (254)
++|+|||||+|+|+.++|+++||||
T Consensus 319 ~~~~fGvGt~l~~~~~~~~l~~v~K 343 (343)
T cd01567 319 PNDAFGVGTSLTNDLGRPPLGFVYK 343 (343)
T ss_pred cCcEEeeCcccccCCCCCccCeeeC
Confidence 9999999999999999999999998
No 17
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.76 E-value=3.8e-18 Score=160.30 Aligned_cols=112 Identities=27% Similarity=0.391 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDS-----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g 78 (254)
.+..|++++.+ .|+.+++||+|| ||+.++++++|+.||+. |+++++|.+|||||++.|.++.+.
T Consensus 213 ~~~~Al~~~~~---~~~~~d~I~LDn~~~~~g~l~~~v~~vr~~ld~~-------g~~~v~IeaSGgI~~~ni~~ya~~- 281 (343)
T PRK08662 213 EREEALRAAEA---LGDRLDGVRLDTPSSRRGNFRKIVREVRWTLDIR-------GYEHVKIFVSGGLDPERIRELRDV- 281 (343)
T ss_pred cHHHHHHHHHH---hCCcCCEEEcCCCCCCCccHHHHHHHHHHHHHhc-------CCCCeEEEEeCCCCHHHHHHHHHh-
Confidence 46677887765 367889999999 99999999999999997 788899999999999999999876
Q ss_pred CcccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccce
Q 025365 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 131 (254)
Q Consensus 79 ~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v 131 (254)
+|.|||||.+.+ +|++|+++|+|++||+|++|+|+.+||..+|-.+++
T Consensus 282 --vD~isvGs~~~~---a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~ 329 (343)
T PRK08662 282 --VDGFGVGTYISF---APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEI 329 (343)
T ss_pred --CCEEEcCccccC---CCccceEEEEEEECCeeeEeecCCcccccCCCHHHH
Confidence 999999999986 789999999999999999999987777776666554
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.69 E-value=2e-16 Score=146.36 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDS-----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g 78 (254)
.+++|+++++++ +.++.+||+|| ||+.++.+++|+.|++. |+++++|.+|||||++.|.++.+.|
T Consensus 197 ~v~eal~~~~~~---~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~-------g~~~~~ieaSGgI~~~~i~~~a~~g 266 (302)
T cd01571 197 EKEEALKAAKAL---GDKLDGVRLDTPSSRRGVFRYLIREVRWALDIR-------GYKHVKIFVSGGLDEEDIKELEDVG 266 (302)
T ss_pred chHHHHHHHHHh---CCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhC-------CCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 577888888764 56789999999 99999999999999997 7788999999999999999999998
Q ss_pred CcccEEeecCcccccCCCCccceEEEEeEEcCccccccC
Q 025365 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 117 (254)
Q Consensus 79 ~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S 117 (254)
+|.||||+.+.+ +|++|++||++++||+|++|++
T Consensus 267 --vD~isvGs~~~~---~~~~D~s~~iv~~~g~~~~K~g 300 (302)
T cd01571 267 --VDAFGVGTAISK---APPVDFTMDIVEVNGQPIAKRG 300 (302)
T ss_pred --CCEEECCcccCC---CCCCCEEEEEEEECCeeeeccC
Confidence 999999999966 7899999999999999999994
No 19
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.26 E-value=1.6e-11 Score=111.58 Aligned_cols=83 Identities=41% Similarity=0.568 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC-----ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSG-----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSG-----Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
+.++++++.+ | ++.+||+||| +++....+.+++||.. |+++++|++|||+|++.|.++.+.|
T Consensus 194 ~~~~~~~~~~----~-~~d~irlDs~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~Sggi~~~~i~~~~~~g- 260 (281)
T cd00516 194 LEEALEAAKA----G-GADGIRLDSGSPEELDPAVLILKARAHLDGK-------GLPRVKIEASGGLDEENIRAYAETG- 260 (281)
T ss_pred HHHHHHHHhc----C-CCCEEEeCCCChHHHHHHHHHHHHHHhhhhc-------CCCceEEEEeCCCCHHHHHHHHHcC-
Confidence 4455555532 2 4789999999 8888888899999865 8899999999999999999999988
Q ss_pred cccEEeecCcccccCCCCccceEEE
Q 025365 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (254)
Q Consensus 80 ~id~fGVGT~l~t~~~~p~l~~vyK 104 (254)
+|+|||||.+.+. |++|++||
T Consensus 261 -vd~~gvG~~~~~~---~~~di~~k 281 (281)
T cd00516 261 -VDVFGVGTLLHSA---PPLDIVLK 281 (281)
T ss_pred -CCEEEeCcccccC---cccCeEeC
Confidence 9999999999984 89999986
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.09 E-value=4.9e-06 Score=71.39 Aligned_cols=70 Identities=24% Similarity=0.241 Sum_probs=53.0
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccc
Q 025365 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (254)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~ 100 (254)
.+.+||+|..++ ...+++.+.+++. ..+++|.+|||+|++.|.++.+.| +|.++||+-..+ +|++|
T Consensus 100 g~d~I~lD~~~~-~~~~~~v~~l~~~--------~~~v~ie~SGGI~~~ni~~ya~~g--vD~isvg~~~~~---a~~~D 165 (169)
T PF01729_consen 100 GADIIMLDNMSP-EDLKEAVEELREL--------NPRVKIEASGGITLENIAEYAKTG--VDVISVGSLTHS---APPLD 165 (169)
T ss_dssp T-SEEEEES-CH-HHHHHHHHHHHHH--------TTTSEEEEESSSSTTTHHHHHHTT---SEEEECHHHHS---BE---
T ss_pred CCCEEEecCcCH-HHHHHHHHHHhhc--------CCcEEEEEECCCCHHHHHHHHhcC--CCEEEcChhhcC---CcccC
Confidence 378999999998 5556666666775 345999999999999999999998 899999987665 78899
Q ss_pred eEEE
Q 025365 101 CVFK 104 (254)
Q Consensus 101 ~vyK 104 (254)
|.+|
T Consensus 166 ~sl~ 169 (169)
T PF01729_consen 166 FSLD 169 (169)
T ss_dssp EEEE
T ss_pred cCcC
Confidence 9875
No 21
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.33 E-value=0.00097 Score=61.40 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=57.8
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|.+|.-++..+.+-++ ++.. ++++++|.+|||+|++.+.++.+.| +|.+.||+-... +|++|+
T Consensus 203 aDiI~LDn~~~e~l~~~v~-~~~~--------~~~~~~ieAsGgIt~~ni~~ya~~G--vD~IsvG~l~~s---a~~~D~ 268 (273)
T PRK05848 203 ADIVMCDNMSVEEIKEVVA-YRNA--------NYPHVLLEASGNITLENINAYAKSG--VDAISSGSLIHQ---ATWIDM 268 (273)
T ss_pred CCEEEECCCCHHHHHHHHH-Hhhc--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEeChhhcC---CCccce
Confidence 4689999999877776665 3433 5688999999999999999999999 899999985543 788999
Q ss_pred EEEE
Q 025365 102 VFKL 105 (254)
Q Consensus 102 vyKl 105 (254)
.+++
T Consensus 269 sl~~ 272 (273)
T PRK05848 269 SMKM 272 (273)
T ss_pred eeec
Confidence 8875
No 22
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.30 E-value=0.0019 Score=59.72 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=59.7
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC-CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~-~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
.....|++|.-++. ..+++.+.+++. |+ ++++|.+|||+|++.|.++.+.| +|.+.+|.- ++ ++|+
T Consensus 201 agaDiI~LDn~~~e-~l~~~v~~l~~~-------~~~~~~~leaSGGI~~~ni~~yA~tG--vD~Is~gal-t~--sa~~ 267 (278)
T PRK08385 201 AGADIIMLDNMTPE-EIREVIEALKRE-------GLRERVKIEVSGGITPENIEEYAKLD--VDVISLGAL-TH--SVRN 267 (278)
T ss_pred cCcCEEEECCCCHH-HHHHHHHHHHhc-------CcCCCEEEEEECCCCHHHHHHHHHcC--CCEEEeChh-hc--CCCc
Confidence 33569999999864 455666777765 44 47999999999999999999998 899999973 33 3788
Q ss_pred cceEEEEeE
Q 025365 99 LGCVFKLVE 107 (254)
Q Consensus 99 l~~vyKlv~ 107 (254)
+|+.+++++
T Consensus 268 ~Dis~~i~~ 276 (278)
T PRK08385 268 FDVSLEILK 276 (278)
T ss_pred cceEEEEec
Confidence 999999874
No 23
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.97 E-value=0.0034 Score=58.31 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 19 G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
+.....|++|--++.. .+++.+++++. .+++.|.+|||+|++.|.++.+.| +|.+.+|.-. + ++|+
T Consensus 217 ~~gaDiI~LDnm~~e~-vk~av~~~~~~--------~~~v~ieaSGGI~~~ni~~yA~tG--vD~Is~galt-~--sa~~ 282 (289)
T PRK07896 217 AEGAELVLLDNFPVWQ-TQEAVQRRDAR--------APTVLLESSGGLTLDTAAAYAETG--VDYLAVGALT-H--SVPV 282 (289)
T ss_pred HcCCCEEEeCCCCHHH-HHHHHHHHhcc--------CCCEEEEEECCCCHHHHHHHHhcC--CCEEEeChhh-c--CCCc
Confidence 4557899999888544 34444466653 478999999999999999999999 8999999743 3 2678
Q ss_pred cceEEE
Q 025365 99 LGCVFK 104 (254)
Q Consensus 99 l~~vyK 104 (254)
+|+.++
T Consensus 283 ~Disl~ 288 (289)
T PRK07896 283 LDIGLD 288 (289)
T ss_pred cccccc
Confidence 888765
No 24
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.67 E-value=0.01 Score=54.54 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=49.8
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceE
Q 025365 23 VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 102 (254)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~v 102 (254)
..|.+|.=++..+ +++.+.+.. .++++.|++|||++++.|.++.+.| +|.+ +.+++.+ ++++|+.
T Consensus 205 D~I~ld~~~p~~l-~~~~~~~~~--------~~~~i~i~AsGGI~~~ni~~~~~~G--vd~I-~vsai~~---a~~~D~s 269 (272)
T cd01573 205 DILQLDKFSPEEL-AELVPKLRS--------LAPPVLLAAAGGINIENAAAYAAAG--ADIL-VTSAPYY---AKPADIK 269 (272)
T ss_pred CEEEECCCCHHHH-HHHHHHHhc--------cCCCceEEEECCCCHHHHHHHHHcC--CcEE-EEChhhc---CcccceE
Confidence 4677766555433 333343433 3467899999999999999999998 7888 6777765 7889998
Q ss_pred EEE
Q 025365 103 FKL 105 (254)
Q Consensus 103 yKl 105 (254)
+++
T Consensus 270 ~~~ 272 (272)
T cd01573 270 VKI 272 (272)
T ss_pred EeC
Confidence 774
No 25
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.33 E-value=0.026 Score=52.47 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=55.4
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 025365 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l 99 (254)
.....|.+|--++..+.+-+ +++++ ...++.|.+|||+|++.|.++.+.| +|..-+|+-... +|++
T Consensus 215 ~GaD~I~LDn~~~e~l~~av-~~~~~--------~~~~i~leAsGGIt~~ni~~ya~tG--vD~Isvgsl~~s---a~~~ 280 (288)
T PRK07428 215 YGADIIMLDNMPVDLMQQAV-QLIRQ--------QNPRVKIEASGNITLETIRAVAETG--VDYISSSAPITR---SPWL 280 (288)
T ss_pred cCCCEEEECCCCHHHHHHHH-HHHHh--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEchhhhC---CCcc
Confidence 33567888877764444333 34544 2467899999999999999999999 889989885543 7899
Q ss_pred ceEEEEe
Q 025365 100 GCVFKLV 106 (254)
Q Consensus 100 ~~vyKlv 106 (254)
|+.++++
T Consensus 281 Dis~~i~ 287 (288)
T PRK07428 281 DLSMRIL 287 (288)
T ss_pred ceEEEec
Confidence 9999876
No 26
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=95.78 E-value=0.053 Score=50.64 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=51.6
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccc
Q 025365 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (254)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~ 100 (254)
....|.+|--++..+..-++ ++ ..+++|-+|||+|++.|.++.+.| +|.+.+|. |++ +++++|
T Consensus 228 gaDiI~LDn~s~e~~~~av~-~~-----------~~~~~ieaSGGI~~~ni~~yA~tG--VD~Is~ga-lth--sa~~lD 290 (296)
T PRK09016 228 GADIIMLDNFTTEQMREAVK-RT-----------NGRALLEVSGNVTLETLREFAETG--VDFISVGA-LTK--HVQALD 290 (296)
T ss_pred CCCEEEeCCCChHHHHHHHH-hh-----------cCCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCCccc
Confidence 35789999999744433333 22 137889999999999999999998 88888887 444 377899
Q ss_pred eEEEE
Q 025365 101 CVFKL 105 (254)
Q Consensus 101 ~vyKl 105 (254)
|.+++
T Consensus 291 ~sl~~ 295 (296)
T PRK09016 291 LSMRF 295 (296)
T ss_pred eeeec
Confidence 98875
No 27
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.61 E-value=0.083 Score=48.81 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=38.6
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEE
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKl 105 (254)
.++.|++|||++++.+.++.+.| +|.+.+|. +++ ++|++||.+++
T Consensus 232 ~~i~leAsGGIt~~ni~~~a~tG--vD~Isvg~-lt~--s~~~~D~sl~~ 276 (277)
T PRK05742 232 GRAKLEASGGINESTLRVIAETG--VDYISIGA-MTK--DVKAVDLSMRL 276 (277)
T ss_pred CCCcEEEECCCCHHHHHHHHHcC--CCEEEECh-hhc--CCcccceeeec
Confidence 36889999999999999999998 88999987 333 37889999886
No 28
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=95.20 E-value=0.079 Score=48.56 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=36.6
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEE
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKl 105 (254)
+.|++|||++++.+.++.+.| +|.+.| +.++++ +|++|+.+++
T Consensus 223 ipi~AsGGI~~~ni~~~a~~G--vd~Isv-gait~s--a~~~D~sl~i 265 (265)
T TIGR00078 223 VLLEASGGITLDNLEEYAETG--VDVISS-GALTHS--VPALDFSLKI 265 (265)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEe-CHHHcC--CCccceeeeC
Confidence 779999999999999999999 899999 556653 6789988763
No 29
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.64 E-value=0.16 Score=47.06 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 025365 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l 99 (254)
.....|.+|--++..+.+-+. ++. ....|-+|||+|++.|.++.+.| +|.+.+|. |++ ++|++
T Consensus 213 ~gaDiI~LDn~s~e~l~~av~-~~~-----------~~~~leaSGGI~~~ni~~yA~tG--VD~Is~Ga-lth--sa~~~ 275 (281)
T PRK06106 213 LGVDAVLLDNMTPDTLREAVA-IVA-----------GRAITEASGRITPETAPAIAASG--VDLISVGW-LTH--SAPVL 275 (281)
T ss_pred cCCCEEEeCCCCHHHHHHHHH-HhC-----------CCceEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhc--CCCcc
Confidence 446799999999744433333 221 23449999999999999999998 89998887 444 36788
Q ss_pred ceEEEE
Q 025365 100 GCVFKL 105 (254)
Q Consensus 100 ~~vyKl 105 (254)
|+.+++
T Consensus 276 Disl~~ 281 (281)
T PRK06106 276 DIGLDF 281 (281)
T ss_pred ccccCC
Confidence 887763
No 30
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.30 E-value=0.18 Score=46.24 Aligned_cols=67 Identities=28% Similarity=0.325 Sum_probs=45.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|.+|.=.+..+ +++.+.+.+ ..++.|++|||++++.|.++.+.| +|.+.+| +++++ .|++|+
T Consensus 202 aD~I~ld~~~~e~l-~~~v~~i~~---------~~~i~i~asGGIt~~ni~~~a~~G--ad~Isvg-al~~s--~~~~D~ 266 (269)
T cd01568 202 ADIIMLDNMSPEEL-KEAVKLLKG---------LPRVLLEASGGITLENIRAYAETG--VDVISTG-ALTHS--APALDI 266 (269)
T ss_pred CCEEEECCCCHHHH-HHHHHHhcc---------CCCeEEEEECCCCHHHHHHHHHcC--CCEEEEc-HHHcC--CCccCc
Confidence 45677777665322 223333322 257889999999999999999999 8888885 55553 557777
Q ss_pred EE
Q 025365 102 VF 103 (254)
Q Consensus 102 vy 103 (254)
.+
T Consensus 267 sl 268 (269)
T cd01568 267 SL 268 (269)
T ss_pred cc
Confidence 54
No 31
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.24 E-value=0.31 Score=41.86 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
|+-+.-++..++ +.|..+.++ +..++. ..+..+.+.. .++++.++++||++.+.+.++.+.| +++
T Consensus 103 gv~t~~e~~~A~-~~Gad~i~~--~p~~~~--g~~~~~~l~~--------~~~~~p~~a~GGI~~~n~~~~~~~G--~~~ 167 (190)
T cd00452 103 GVATPTEIMQAL-ELGADIVKL--FPAEAV--GPAYIKALKG--------PFPQVRFMPTGGVSLDNAAEWLAAG--VVA 167 (190)
T ss_pred CcCCHHHHHHHH-HCCCCEEEE--cCCccc--CHHHHHHHHh--------hCCCCeEEEeCCCCHHHHHHHHHCC--CEE
Confidence 333444444443 456665554 544432 3333333333 4567899999999999999999999 999
Q ss_pred EeecCcccc
Q 025365 84 FGIGTYLVT 92 (254)
Q Consensus 84 fGVGT~l~t 92 (254)
.+||+.+.+
T Consensus 168 v~v~s~i~~ 176 (190)
T cd00452 168 VGGGSLLPK 176 (190)
T ss_pred EEEchhcch
Confidence 999998874
No 32
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.78 E-value=0.3 Score=43.38 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhhcCCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCccc
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRl-DSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id 82 (254)
|+-+.-++..++ +.|..+.++-+ +...+.+ .+.|.. .|++++++++||++++.+.++.+.| ++
T Consensus 115 G~~T~~E~~~A~-~~Gad~vklFPa~~~G~~~-----ik~l~~--------~~p~ip~~atGGI~~~N~~~~l~aG--a~ 178 (213)
T PRK06552 115 GCMTVTEIVTAL-EAGSEIVKLFPGSTLGPSF-----IKAIKG--------PLPQVNVMVTGGVNLDNVKDWFAAG--AD 178 (213)
T ss_pred CcCCHHHHHHHH-HcCCCEEEECCcccCCHHH-----HHHHhh--------hCCCCEEEEECCCCHHHHHHHHHCC--Cc
Confidence 333444444443 56777666643 2222222 222332 5678999999999999999999988 89
Q ss_pred EEeecCcccc
Q 025365 83 AFGIGTYLVT 92 (254)
Q Consensus 83 ~fGVGT~l~t 92 (254)
++|||+.|..
T Consensus 179 ~vavgs~l~~ 188 (213)
T PRK06552 179 AVGIGGELNK 188 (213)
T ss_pred EEEEchHHhC
Confidence 9999999965
No 33
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.22 E-value=1.2 Score=41.44 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|-+|--++..+.. +.+++++. ..++.|-+|||++++.|.++.+.| +|.+ +-+.|.+ +|++|+
T Consensus 210 aDiI~LDn~~~e~l~~-av~~~~~~--------~~~~~leaSGGI~~~ni~~yA~tG--vD~I-s~gal~~---a~~~Di 274 (284)
T PRK06096 210 PDVLQLDKFSPQQATE-IAQIAPSL--------APHCTLSLAGGINLNTLKNYADCG--IRLF-ITSAPYY---AAPADI 274 (284)
T ss_pred CCEEEECCCCHHHHHH-HHHHhhcc--------CCCeEEEEECCCCHHHHHHHHhcC--CCEE-EECcccc---CCCcCe
Confidence 4566677666544433 33444432 257889999999999999999998 7777 4445654 488999
Q ss_pred EEEEeEE
Q 025365 102 VFKLVEI 108 (254)
Q Consensus 102 vyKlv~~ 108 (254)
.+++-.+
T Consensus 275 sl~i~~~ 281 (284)
T PRK06096 275 KVSLQPA 281 (284)
T ss_pred EEEEEec
Confidence 9988543
No 34
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.57 E-value=1.2 Score=36.64 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=50.3
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 17 ~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+.+..+.|+=-=.++-..+.+++.+.|++. |..+++|++.|.+-.+...+|.+.|. -..|+.||.+..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~-------g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~ 118 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKL-------GRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPE 118 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhc-------CCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHH
Confidence 334555555333345566777778888876 77789999999898888999999985 557899998765
No 35
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.41 E-value=0.92 Score=41.62 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=35.5
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEE
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFK 104 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyK 104 (254)
++.|++|||++++.|.++.+.| +|.+.||+ +++ ++|++|+.++
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~G--vd~Iav~s-l~~--~a~~~D~sl~ 268 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETG--VDYISVGA-LTH--SAPALDISLD 268 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEEe-eec--CCCccCccCC
Confidence 5789999999999999999998 88888887 433 2677888654
No 36
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.83 E-value=0.89 Score=39.34 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 55 FEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 55 ~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++++++++.||++.+.+.++.+.| +++.|||+.|..
T Consensus 150 ~~~ipvvaiGGI~~~n~~~~l~aG--a~~vav~s~i~~ 185 (187)
T PRK07455 150 LGHIPLIPTGGVTLENAQAFIQAG--AIAVGLSGQLFP 185 (187)
T ss_pred CCCCcEEEeCCCCHHHHHHHHHCC--CeEEEEehhccc
Confidence 457899999999999999999988 899999999875
No 37
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.61 E-value=0.32 Score=43.06 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|++++++.+||++.+.+.++++.| ..++|+|+.|+.
T Consensus 145 plp~i~~~ptGGV~~~N~~~~l~aG--a~~vg~Gs~L~~ 181 (204)
T TIGR01182 145 PFPQVRFCPTGGINLANVRDYLAAP--NVACGGGSWLVP 181 (204)
T ss_pred cCCCCcEEecCCCCHHHHHHHHhCC--CEEEEEChhhcC
Confidence 6789999999999999999999988 889999999986
No 38
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.34 E-value=1.9 Score=34.40 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 19 G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+..+.++=.-.+......+++.+.|++. |+.+++|++.|..-.+.+.++.+.| --..|+.||..-+
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~-------~~~~i~i~~GG~~~~~~~~~~~~~G-~d~~~~~~~~~~~ 115 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLREL-------GAGDILVVGGGIIPPEDYELLKEMG-VAEIFGPGTSIEE 115 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhc-------CCCCCEEEEECCCCHHHHHHHHHCC-CCEEECCCCCHHH
Confidence 4445555333345555666666677775 7789999999988888899999999 3456788887643
No 39
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.94 E-value=0.39 Score=40.94 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=33.0
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++.|+++||++++.+.++.+.| +|+++||+.|+...
T Consensus 157 ~~~~i~~~GGI~~~~i~~~~~~G--ad~vvvGsai~~~~ 193 (202)
T cd04726 157 LGVKVAVAGGITPDTLPEFKKAG--ADIVIVGRAITGAA 193 (202)
T ss_pred cCCCEEEECCcCHHHHHHHHhcC--CCEEEEeehhcCCC
Confidence 46789999999999999999988 89999999998643
No 40
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.57 E-value=2.3 Score=39.82 Aligned_cols=69 Identities=25% Similarity=0.346 Sum_probs=48.1
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|-+|--++..+.+-+ ++++ .++.|-+|||++++.|.++.+.| +|..=+|. |++ ++|++|+
T Consensus 226 aDiImLDnmspe~l~~av-~~~~-----------~~~~lEaSGGIt~~ni~~yA~tG--VD~IS~ga-lth--sa~~lD~ 288 (294)
T PRK06978 226 AQSVLLDNFTLDMMREAV-RVTA-----------GRAVLEVSGGVNFDTVRAFAETG--VDRISIGA-LTK--DVRATDY 288 (294)
T ss_pred CCEEEECCCCHHHHHHHH-Hhhc-----------CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCcccce
Confidence 456667777765444322 2221 26789999999999999999999 56655554 544 3689999
Q ss_pred EEEEeE
Q 025365 102 VFKLVE 107 (254)
Q Consensus 102 vyKlv~ 107 (254)
.+++.+
T Consensus 289 sl~~~~ 294 (294)
T PRK06978 289 SMRIVE 294 (294)
T ss_pred EEeccC
Confidence 998753
No 41
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.68 E-value=2.7 Score=39.08 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=48.0
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|-+|--++..+.+-+. +++ ..+.|-+|||+|++.|.++.+.| +|..=+|. |++ +.|++|+
T Consensus 214 aDiImLDn~s~e~l~~av~-~~~-----------~~~~leaSGgI~~~ni~~yA~tG--VD~Is~ga-lth--s~~~~D~ 276 (281)
T PRK06543 214 VDTIMLDNFSLDDLREGVE-LVD-----------GRAIVEASGNVNLNTVGAIASTG--VDVISVGA-LTH--SVRALDL 276 (281)
T ss_pred CCEEEECCCCHHHHHHHHH-HhC-----------CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCcccce
Confidence 4577888888655444333 332 24579999999999999999988 66666664 554 3778999
Q ss_pred EEEE
Q 025365 102 VFKL 105 (254)
Q Consensus 102 vyKl 105 (254)
.+++
T Consensus 277 sl~i 280 (281)
T PRK06543 277 GLDI 280 (281)
T ss_pred eeec
Confidence 8875
No 42
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=87.91 E-value=1.2 Score=38.31 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
...|.+.||++.+.+.++.+.| +|.|.||+.+..+.
T Consensus 158 ~~~i~v~GGI~~~n~~~~~~~G--a~~v~vGsai~~~~ 193 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVIKLG--PDIVIVGGAITKAA 193 (206)
T ss_pred CCcEEEECCcCHHHHHHHHHcC--CCEEEEeehhcCCC
Confidence 4568889999999999999988 79999999998753
No 43
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.88 E-value=1 Score=42.98 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 9 CAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 9 i~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
.+-+.+|-+....+..|=+|| |. |..+.+++.+... -|+++-||+.|=-+.+...+|.+.|+.+.-.||
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~-----~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKARE-----AWPDKTICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHH-----hCCCCcEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 444556666434566788898 66 4444444333322 357888999999999999999999988777788
Q ss_pred c------CcccccCCCCccceEEEEeEEc---CccccccCCCCCccCCCcc--cceeeecCCCCceeEEEEecCCC
Q 025365 87 G------TYLVTCYAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENE 151 (254)
Q Consensus 87 G------T~l~t~~~~p~l~~vyKlv~~~---g~p~~K~S~~~~K~t~PG~--K~vyR~~d~~g~~~~D~i~l~~e 151 (254)
| |++++..+.|-+..+|++.+.. |.|++ ++ |=...||. |.+. . ..+-.+..-+++-.+|
T Consensus 181 GpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiI--AD--GGi~~sGDI~KAla-a-GAd~VMlGsllAGt~E 250 (346)
T PRK05096 181 GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIV--SD--GGCTVPGDVAKAFG-G-GADFVMLGGMLAGHEE 250 (346)
T ss_pred cCCccccCccccccChhHHHHHHHHHHHHHHcCCCEE--ec--CCcccccHHHHHHH-c-CCCEEEeChhhcCccc
Confidence 8 7788888899999999988762 44555 33 43444452 3332 1 2233344445555555
No 44
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=87.49 E-value=0.56 Score=41.29 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.|++++++.+||++++.+.++.+.| ..+.|+|+.|+..
T Consensus 145 p~p~~~~~ptGGV~~~N~~~~l~ag--~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 145 PFPDLPFMPTGGVNPDNLAEYLKAG--AVAVGGGSWLFPK 182 (196)
T ss_dssp TTTT-EEEEBSS--TTTHHHHHTST--TBSEEEESGGGSH
T ss_pred cCCCCeEEEcCCCCHHHHHHHHhCC--CEEEEECchhcCH
Confidence 6899999999999999999999988 7789999999874
No 45
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.31 E-value=0.57 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=33.9
Q ss_pred CCCceEEEEeCCCCH--HHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNE--ETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde--~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|++++++.+||+++ +.+.++++.| +.++|+|+.|+.
T Consensus 155 p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~ 193 (222)
T PRK07114 155 PMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIP 193 (222)
T ss_pred cCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcC
Confidence 678999999999998 8999999988 889999999986
No 46
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=87.12 E-value=0.69 Score=38.53 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=32.8
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.+++|++.||++.+.+.++.+.| +|++.+|+.+..+.
T Consensus 149 ~~~pv~a~GGi~~~~i~~~~~~G--a~~i~~g~~i~~~~ 185 (196)
T cd00564 149 VEIPVVAIGGITPENAAEVLAAG--ADGVAVISAITGAD 185 (196)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEehHhhcCC
Confidence 45789999999999999999988 89999999998653
No 47
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.04 E-value=1.3 Score=39.42 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=31.3
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|.+-||++++.+..+.+.| +|.|=+||.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~aG--Ad~vVvGSaIf~~ 201 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAEAG--ADMFVAGSAIFGQ 201 (220)
T ss_pred CeeEEEECCCCHHHHHHHHHcC--CCEEEEeHHHhCC
Confidence 5779999999999999999998 8889999998764
No 48
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=86.73 E-value=1.7 Score=41.50 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
+-.+-+.+|-+.|..+..|=+|| |. |..+.+.+..... -++++-|++.|=.+.+...+|.+.|+...-.
T Consensus 107 ~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~-----~~p~~~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVRE-----AFPEHTIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHh-----hCCCCeEEEecccCHHHHHHHHHcCCCEEEE
Confidence 34556677777776778899999 66 4444443333322 2467779999999999999999999776556
Q ss_pred e------ecCcccccCCCCccceEEEEeEEc
Q 025365 85 G------IGTYLVTCYAQAALGCVFKLVEIN 109 (254)
Q Consensus 85 G------VGT~l~t~~~~p~l~~vyKlv~~~ 109 (254)
| .||+.++..+.|.+..++++++.-
T Consensus 178 giGpGSicttR~~~Gvg~pqltAv~~~a~aa 208 (343)
T TIGR01305 178 GIGPGSVCTTRTKTGVGYPQLSAVIECADAA 208 (343)
T ss_pred cccCCCcccCceeCCCCcCHHHHHHHHHHHh
Confidence 6 347777777789999999988763
No 49
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=86.70 E-value=5.6 Score=36.85 Aligned_cols=67 Identities=15% Similarity=0.060 Sum_probs=45.5
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|-+|--++..+...+ +++++ ...++.|-+|||+|++.|.++.+.| +|.+=+|. +.+ ++++|+
T Consensus 209 aDiI~lDn~~~e~l~~~v-~~l~~--------~~~~~~leasGGI~~~ni~~ya~~G--vD~is~ga-l~~---a~~~Di 273 (277)
T TIGR01334 209 PDILQLDKFTPQQLHHLH-ERLKF--------FDHIPTLAAAGGINPENIADYIEAG--IDLFITSA-PYY---AAPCDI 273 (277)
T ss_pred cCEEEECCCCHHHHHHHH-HHHhc--------cCCCEEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cee---cCccce
Confidence 456777766655544443 34443 2357889999999999999999988 67775554 444 566776
Q ss_pred EE
Q 025365 102 VF 103 (254)
Q Consensus 102 vy 103 (254)
--
T Consensus 274 ~~ 275 (277)
T TIGR01334 274 KV 275 (277)
T ss_pred EE
Confidence 43
No 50
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.61 E-value=4.3 Score=34.17 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=56.4
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 19 G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.-...||=.=+|.=..+..++++.|.++ |..++.+++.|-+-.+.+.+|.+.|. --.|+.||.+..
T Consensus 63 dv~vIgvSsl~g~h~~l~~~lve~lre~-------G~~~i~v~~GGvip~~d~~~l~~~G~-~~if~pgt~~~~ 128 (143)
T COG2185 63 DVDVIGVSSLDGGHLTLVPGLVEALREA-------GVEDILVVVGGVIPPGDYQELKEMGV-DRIFGPGTPIEE 128 (143)
T ss_pred CCCEEEEEeccchHHHHHHHHHHHHHHh-------CCcceEEeecCccCchhHHHHHHhCc-ceeeCCCCCHHH
Confidence 3455677777788889999999999998 88999889999999999999999885 447999999865
No 51
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=86.54 E-value=6.8 Score=36.49 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=38.5
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeE
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~ 107 (254)
.++.+=+||+++++.|.++..-| +|.+-+|. |++ +.|.+|+.+++..
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tG--VD~IS~ga-lth--s~~~lDisl~~~~ 279 (280)
T COG0157 233 GRALLEASGGITLENIREYAETG--VDVISVGA-LTH--SAPALDISLDIVR 279 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcC--CCEEEeCc-ccc--CCcccceEEEeec
Confidence 47889999999999999999988 77777763 443 3788999998764
No 52
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=86.00 E-value=6 Score=32.57 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC------HHHHHHHhhcCCcccEEeecCcccc
Q 025365 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 33 ~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld------e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+++.+.|+++ |+.+++|++.|.+- ++.+.+|.+.|+ --.||-||.+.+
T Consensus 64 ~~~~~~~~~~l~~~-------gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv-~~vf~pgt~~~~ 121 (128)
T cd02072 64 EIDCKGLREKCDEA-------GLKDILLYVGGNLVVGKQDFEDVEKRFKEMGF-DRVFAPGTPPEE 121 (128)
T ss_pred HHHHHHHHHHHHHC-------CCCCCeEEEECCCCCChhhhHHHHHHHHHcCC-CEEECcCCCHHH
Confidence 44567788888887 88789999999973 455677999996 348999997654
No 53
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=85.95 E-value=0.88 Score=38.72 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=32.5
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++++.+.++.+.| ++++.+|+.+..+.
T Consensus 152 ~~pv~a~GGI~~~~~~~~~~~G--~~gva~~~~i~~~~ 187 (196)
T TIGR00693 152 DIPIVAIGGITLENAAEVLAAG--ADGVAVVSAIMQAA 187 (196)
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEEhHHhhCCC
Confidence 4789999999999999999888 79999999998754
No 54
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=85.64 E-value=3 Score=36.73 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=33.5
Q ss_pred CCC-ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFE-KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~-~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++ ++++++.||++.+.+.++.+.| .++++||+.|..
T Consensus 147 ~~~~~ipvvaiGGI~~~n~~~~~~aG--a~~vav~s~l~~ 184 (206)
T PRK09140 147 VLPPDVPVFAVGGVTPENLAPYLAAG--AAGFGLGSALYR 184 (206)
T ss_pred hcCCCCeEEEECCCCHHHHHHHHHCC--CeEEEEehHhcc
Confidence 344 6999999999999999999998 899999999976
No 55
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=85.24 E-value=1.7 Score=42.57 Aligned_cols=92 Identities=26% Similarity=0.263 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
++..+-+.+|.+.|.. .|=+|+ |+- ..+.+.+.+... -|+++.|++.|-++.+.+..+.+.|+....
T Consensus 223 ~~~~~r~~~L~~aG~d--~I~vd~a~g~~----~~~~~~i~~i~~-----~~~~~~vi~G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 223 EFDKERAEALVKAGVD--VIVIDSSHGHS----IYVIDSIKEIKK-----TYPDLDIIAGNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred hhHHHHHHHHHHhCCC--EEEEECCCCcH----hHHHHHHHHHHH-----hCCCCCEEEEeCCCHHHHHHHHHhCCCEEE
Confidence 3556677778787754 677888 542 233333333222 246788999999999999999999964433
Q ss_pred Eeec------CcccccCCCCccceEEEEeEE
Q 025365 84 FGIG------TYLVTCYAQAALGCVFKLVEI 108 (254)
Q Consensus 84 fGVG------T~l~t~~~~p~l~~vyKlv~~ 108 (254)
.|+| |..++..+.|.+..+++++++
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~ 322 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEY 322 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHH
Confidence 3443 344555567777777777543
No 56
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.21 E-value=2.6 Score=36.85 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.8
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||+ +.+.+.++.+.| .|+++|||.|+...
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal~~~~ 213 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALELG--ADAVVVGSAITRPE 213 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHHhChH
Confidence 4679999999 799999999988 89999999998743
No 57
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.12 E-value=7.7 Score=35.89 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=36.4
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEE
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKl 105 (254)
.+.|.++||++++.+.++.+.| +|.+-||. ++++ +|++|+.+++
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~G--vd~IAvg~-l~~s--a~~~D~~~~~ 275 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTG--VDYISLGF-LTHS--VKALDISFNI 275 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--CcccceEEEc
Confidence 4668899999999999999999 88888876 5443 6789998875
No 58
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=85.10 E-value=2.4 Score=37.99 Aligned_cols=46 Identities=15% Similarity=0.342 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 38 ~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++|+++++. ++ +++|-+-||++++.|..+.+.| +|.|=+||++...
T Consensus 160 ~l~~~~~~~-------~~-~~~IeVDGGI~~eti~~l~~aG--aDi~V~GSaiF~~ 205 (223)
T PRK08745 160 AIRKKIDAL-------GK-PIRLEIDGGVKADNIGAIAAAG--ADTFVAGSAIFNA 205 (223)
T ss_pred HHHHHHHhc-------CC-CeeEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCC
Confidence 445555553 44 5889999999999999999999 5888899998753
No 59
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=84.44 E-value=1.1 Score=38.24 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.7
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+++.|++.||++.+.+.++.+.| .|++.+|+.+..+.
T Consensus 159 ~~~~v~a~GGI~~~~i~~~~~~G--a~gv~~gs~i~~~~ 195 (212)
T PRK00043 159 GDIPIVAIGGITPENAPEVLEAG--ADGVAVVSAITGAE 195 (212)
T ss_pred CCCCEEEECCcCHHHHHHHHHcC--CCEEEEeHHhhcCC
Confidence 34789999999999999999998 88999999998753
No 60
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.34 E-value=6.9 Score=32.25 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=43.8
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC------CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL------NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l------de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+.++=.=++-.....+++.+.|++. |+.+++|++.|.+ .++...++.+.|+ -..|+=||.+-+
T Consensus 57 ~V~lS~~~~~~~~~~~~~~~~L~~~-------~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~-~~vf~~~~~~~~ 125 (137)
T PRK02261 57 AILVSSLYGHGEIDCRGLREKCIEA-------GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF-DRVFPPGTDPEE 125 (137)
T ss_pred EEEEcCccccCHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCccChHHHHHHHHHcCC-CEEECcCCCHHH
Confidence 3344333344455666777777775 7788999999998 5677788888884 447888887643
No 61
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.34 E-value=2.2 Score=42.34 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
...+.+.+|.+.|.+. |=+|+-.=. +..+.+++.+... -|+++.||+.|=-+.+....|.+.|+.....||
T Consensus 227 ~~~~~a~~Lv~aGvd~--i~~D~a~~~--~~~~~~~i~~ik~-----~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDV--LVVDTAHGH--QEKMLEALRAVRA-----LDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCE--EEEeccCCc--cHHHHHHHHHHHH-----HCCCCeEEeeccCCHHHHHHHHHcCCCEEEECc
Confidence 3456677777777665 667873211 4444444444322 357899999999999999999999977777788
Q ss_pred cC------cccccCCCCccceEEEEeEE---cCccccccCCCCCccCCCcc--cceeeecCCCCceeEEEEecCCC
Q 025365 87 GT------YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENE 151 (254)
Q Consensus 87 GT------~l~t~~~~p~l~~vyKlv~~---~g~p~~K~S~~~~K~t~PG~--K~vyR~~d~~g~~~~D~i~l~~e 151 (254)
|+ +.+|..+.|-+..+|++++. -|.|++=- |....||. |.+. ...+..++.-+++..+|
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~----ggi~~~~~~~~al~--~ga~~v~~g~~~ag~~E 367 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD----GGVRHPRDVALALA--AGASNVMIGSWFAGTYE 367 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec----CCCCCHHHHHHHHH--cCCCeeeccHhhccCcc
Confidence 87 56667778999999999875 25677633 66776763 3332 23344455556666666
No 62
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.16 E-value=3.7 Score=35.81 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=30.3
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~G--adgV~iGsai~~ 207 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELG--AHAVVVGGAITR 207 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHhcC
Confidence 4669999999 799999999988 799999999875
No 63
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.05 E-value=6.7 Score=36.67 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=48.2
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|-+|--++..+.+-+ ++++ .++.|-+|||++++.|.++.+.| +|..=+|. |++ ++|++|+
T Consensus 218 aDiImLDnmspe~l~~av-~~~~-----------~~~~leaSGGI~~~ni~~yA~tG--VD~Is~ga-lth--sa~~~Di 280 (290)
T PRK06559 218 ADIIMLDNMSLEQIEQAI-TLIA-----------GRSRIECSGNIDMTTISRFRGLA--IDYVSSGS-LTH--SAKSLDF 280 (290)
T ss_pred CCEEEECCCCHHHHHHHH-HHhc-----------CceEEEEECCCCHHHHHHHHhcC--CCEEEeCc-ccc--CCcccce
Confidence 457777777765554443 2332 26789999999999999999999 56655554 444 3678999
Q ss_pred EEEEe
Q 025365 102 VFKLV 106 (254)
Q Consensus 102 vyKlv 106 (254)
.+|..
T Consensus 281 sl~~~ 285 (290)
T PRK06559 281 SMKGL 285 (290)
T ss_pred eeech
Confidence 87754
No 64
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=82.47 E-value=1.8 Score=38.73 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|.+++++.+||+++..+.++...| +.++|+|+.|+.
T Consensus 150 P~~~v~~~pTGGVs~~N~~~yla~g--v~avG~Gs~l~~ 186 (211)
T COG0800 150 PFPQVRFCPTGGVSLDNAADYLAAG--VVAVGLGSWLVP 186 (211)
T ss_pred CCCCCeEeecCCCCHHHHHHHHhCC--ceEEecCccccC
Confidence 5688999999999999999999888 999999999986
No 65
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.45 E-value=3.5 Score=37.13 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 37 ~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+++|+++++. |+ ++.|-+-||++++.+..+.+.| +|.|=+||.+..
T Consensus 167 ~~lr~~~~~~-------~~-~~~IeVDGGI~~~ti~~l~~aG--aD~~V~GSalF~ 212 (228)
T PRK08091 167 IQVENRLGNR-------RV-EKLISIDGSMTLELASYLKQHQ--IDWVVSGSALFS 212 (228)
T ss_pred HHHHHHHHhc-------CC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChhhhC
Confidence 3455666654 54 5779999999999999999999 778888999875
No 66
>PRK07695 transcriptional regulator TenI; Provisional
Probab=82.22 E-value=1.4 Score=38.02 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=32.4
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++++.+.++.+.| .|+++||+.+..+.
T Consensus 149 ~ipvia~GGI~~~~~~~~~~~G--a~gvav~s~i~~~~ 184 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLAAG--VSGIAVMSGIFSSA 184 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEEHHHhcCC
Confidence 5789999999999999999988 79999999998754
No 67
>PRK14057 epimerase; Provisional
Probab=81.75 E-value=3.6 Score=37.72 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 38 ~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++|+++++. |+ ++.|-+-||++++.|..+.++| +|.|=+||.+..
T Consensus 182 ~lr~~~~~~-------~~-~~~IeVDGGI~~~ti~~l~~aG--ad~~V~GSalF~ 226 (254)
T PRK14057 182 QLLCLLGDK-------RE-GKIIVIDGSLTQDQLPSLIAQG--IDRVVSGSALFR 226 (254)
T ss_pred HHHHHHHhc-------CC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChHhhC
Confidence 345566554 54 5789999999999999999999 778878888875
No 68
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=80.77 E-value=3.8 Score=40.55 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
...+.+++|.+.|.. .|-+|+ |.+..+. ...+.+.+. ++++.|++.|..+.+.+..+.+.|+.+...
T Consensus 228 ~~~e~a~~L~~agvd--vivvD~a~g~~~~vl-~~i~~i~~~--------~p~~~vi~g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 228 DNEERAEALVEAGVD--VLVVDTAHGHSEGVL-DRVREIKAK--------YPDVQIIAGNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred chHHHHHHHHHhCCC--EEEEECCCCcchhHH-HHHHHHHhh--------CCCCCEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 346788888888876 456775 6653322 223333332 357889999999999999999999765444
Q ss_pred eec------CcccccCCCCccceEEEEeE
Q 025365 85 GIG------TYLVTCYAQAALGCVFKLVE 107 (254)
Q Consensus 85 GVG------T~l~t~~~~p~l~~vyKlv~ 107 (254)
|+| |+.++..+.|.+..++++.+
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~ 325 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAE 325 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHH
Confidence 544 34444556677777777654
No 69
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.76 E-value=4.3 Score=36.02 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=31.2
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|++++++.+||++++.+.++.+.| ....|.|+.|+.
T Consensus 152 p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~ 188 (212)
T PRK05718 152 PFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVP 188 (212)
T ss_pred cCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCC
Confidence 5789999999999999999999988 345555888875
No 70
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.47 E-value=5.2 Score=34.47 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=31.3
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
..|++.||++++.+.++.+.| +|++=||+.++.+.+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~G--aD~vvvgSai~~~~d 206 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAG--ADVFVAGSAVFGAPD 206 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCCCC
Confidence 558899999999999999877 799999999997543
No 71
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=80.39 E-value=4 Score=34.80 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.7
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+.|++.||++.+.+.++.+.| +|++-||+.+....
T Consensus 166 ~~i~v~GGI~~env~~l~~~g--ad~iivgsai~~~~ 200 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAG--ADILVAGSAIFGAD 200 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcC--CCEEEEChHHhCCC
Confidence 569999999999999999888 78999999998643
No 72
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=80.02 E-value=21 Score=33.76 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=35.0
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEE
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKl 105 (254)
.+.|-+|||++++.|.++...| +|..=+|. |+++ +|++|+.+++
T Consensus 262 ~~~lEaSGGIt~~ni~~yA~tG--VD~Is~Ga-lths--a~~~Disl~i 305 (308)
T PLN02716 262 RFETEASGNVTLDTVHKIGQTG--VTYISSGA-LTHS--VKALDISLKI 305 (308)
T ss_pred CceEEEECCCCHHHHHHHHHcC--CCEEEeCc-cccC--CCccceEEEE
Confidence 4569999999999999999999 56655554 4443 7889999887
No 73
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=79.55 E-value=5.8 Score=33.66 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.9
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++.+.+.++.+.| +|++=||+.++...
T Consensus 166 ~~pi~v~GGI~~env~~~~~~g--ad~iivgsai~~~~ 201 (211)
T cd00429 166 NLLIEVDGGINLETIPLLAEAG--ADVLVAGSALFGSD 201 (211)
T ss_pred CeEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhCCC
Confidence 4679999999999999999888 78999999998754
No 74
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=78.35 E-value=5.1 Score=36.08 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCc-ccc
Q 025365 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTY-LVT 92 (254)
Q Consensus 38 ~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~-l~t 92 (254)
++|+++++. |+ ++.|-+-||++++.|..+.+.| +|.|=+||+ +..
T Consensus 158 ~lr~~~~~~-------~~-~~~IeVDGGI~~~~i~~~~~aG--ad~~V~Gss~iF~ 203 (229)
T PRK09722 158 ELKALRERN-------GL-EYLIEVDGSCNQKTYEKLMEAG--ADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHhc-------CC-CeEEEEECCCCHHHHHHHHHcC--CCEEEEChHHHcC
Confidence 345555553 54 5789999999999999999999 788888976 654
No 75
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=78.14 E-value=8.9 Score=35.14 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCC-ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 9 CAVALALNDLGYK-AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 9 i~va~~l~~~G~~-~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
+++|+...+.|.+ +.-|=| |.. ...-++++..+ ..++|.+.||+..+.++++.+.| ++..+||
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL--g~~--n~~~i~~i~~~----------~~~~v~vGGGIr~e~v~~~l~aG--a~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML--GPN--NDDAAKEALHA----------YPGGLQVGGGINDTNAQEWLDEG--ASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC--CCC--cHHHHHHHHHh----------CCCCEEEeCCcCHHHHHHHHHcC--CCEEEEC
Confidence 6788888888876 345666 555 33445556555 34789999999999999999999 8899999
Q ss_pred Cccccc
Q 025365 88 TYLVTC 93 (254)
Q Consensus 88 T~l~t~ 93 (254)
|.+++.
T Consensus 105 S~av~~ 110 (253)
T TIGR02129 105 SWLFTK 110 (253)
T ss_pred cHHHhC
Confidence 999874
No 76
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=78.10 E-value=8.2 Score=35.26 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.7
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .|+..||+.++.
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~G--Ad~V~igr~~l~ 268 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAG--ASAVQVGTAVYY 268 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeecHHHhc
Confidence 3569999998 788888888888 889999999876
No 77
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=78.00 E-value=5.1 Score=39.77 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
...+.+.+|-+.|.+. |=+|+-+- .+..+.+++++... -|.++.||+.|..+.+.+..|.+.|+.....|+
T Consensus 225 ~~~~ra~~Lv~aGVd~--i~~D~a~g--~~~~~~~~i~~i~~-----~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 225 DVGGKAKALLDAGVDV--LVIDTAHG--HQVKMISAIKAVRA-----LDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred cHHHHHHHHHHhCCCE--EEEeCCCC--CcHHHHHHHHHHHH-----HCCCCeEEEeccCCHHHHHHHHHhCCCEEEECC
Confidence 3456677777777654 66788441 13444444444322 356888999999999999999999976666666
Q ss_pred c------CcccccCCCCccceEEEEeE
Q 025365 87 G------TYLVTCYAQAALGCVFKLVE 107 (254)
Q Consensus 87 G------T~l~t~~~~p~l~~vyKlv~ 107 (254)
| |+.++..+.|.+.-+|++++
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHH
Confidence 6 66666777888888888853
No 78
>PRK04302 triosephosphate isomerase; Provisional
Probab=77.19 E-value=7.7 Score=34.12 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.8
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.+++|++.||+ +.+.+..+.+.| +|++-|||.++...
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~l~~~ 209 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELG--ADGVLLASGVVKAK 209 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHHhCCc
Confidence 46889999999 677777777777 89999999999754
No 79
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=76.52 E-value=8.6 Score=35.93 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhcCCCccEEe----e-------CCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIR----L-------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVR----l-------DSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~ 72 (254)
+..++.++++|.+.|..+.-|- . .++....+++++| +. .++.|++.|++ +.+.+.
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir----~~---------~~iPVi~~G~i~t~~~a~ 306 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIR----QE---------AGIPVIAVGLITDPEQAE 306 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHH----hh---------CCCCEEEeCCCCCHHHHH
Confidence 5678899999988876544331 0 0111122222222 22 25679999998 889999
Q ss_pred HHhhcCCcccEEeecCcccccC
Q 025365 73 ALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 73 ~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.++|. +|..++|+.++...
T Consensus 307 ~~l~~g~-aD~V~~gR~~i~dP 327 (336)
T cd02932 307 AILESGR-ADLVALGRELLRNP 327 (336)
T ss_pred HHHHcCC-CCeehhhHHHHhCc
Confidence 9998875 89999999998843
No 80
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=76.24 E-value=8 Score=34.18 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhcCCCccEE--eeCCCChHHHHHH-HHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhc-CCcc
Q 025365 7 NFCAVALALNDLGYKAVGI--RLDSGDLAYLSCE-ARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQ-GHEV 81 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gV--RlDSGDl~~ls~~-~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~-g~~i 81 (254)
..+..++.+.+.|....-| |..+|...-.-.. ++++.+. .+++++++||+ +.+.+.++.+. | +
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~----------~~~pvia~GGi~~~~di~~~l~~~g--~ 217 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA----------VNIPVIASGGAGKPEHFVEAFEEGG--A 217 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh----------CCCCEEEeCCCCCHHHHHHHHHhCC--C
Confidence 4667788888888775555 5554432111111 2222221 36779999999 68899998875 6 8
Q ss_pred cEEeecCccccc
Q 025365 82 DAFGIGTYLVTC 93 (254)
Q Consensus 82 d~fGVGT~l~t~ 93 (254)
|+.-||+.|...
T Consensus 218 dgv~vg~al~~~ 229 (243)
T cd04731 218 DAALAASIFHFG 229 (243)
T ss_pred CEEEEeHHHHcC
Confidence 889999988764
No 81
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.50 E-value=4.8 Score=35.57 Aligned_cols=37 Identities=3% Similarity=-0.013 Sum_probs=31.1
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|++++++.+||++.+.+.++.+.|+ ...|.|+.|+.
T Consensus 141 plp~~~l~ptGGV~~~n~~~~l~ag~--~~~~ggs~l~~ 177 (201)
T PRK06015 141 PLAGTFFCPTGGISLKNARDYLSLPN--VVCVGGSWVAP 177 (201)
T ss_pred hCCCCcEEecCCCCHHHHHHHHhCCC--eEEEEchhhCC
Confidence 68999999999999999999999874 35555777764
No 82
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=75.38 E-value=4.9 Score=39.57 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=67.6
Q ss_pred ccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc------c
Q 025365 22 AVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT------C 93 (254)
Q Consensus 22 ~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t------~ 93 (254)
+..|=||| |+=.++.. +.+...+ -|++..||++|-..-+-.++|..+|+..--.|+|+-=+. .
T Consensus 264 vdvviLDSSqGnS~~qie-mik~iK~--------~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma 334 (503)
T KOG2550|consen 264 VDVVILDSSQGNSIYQLE-MIKYIKE--------TYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMA 334 (503)
T ss_pred CcEEEEecCCCcchhHHH-HHHHHHh--------hCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeee
Confidence 45788999 77544433 3344444 379999999999999999999999987777788765443 3
Q ss_pred CCCCccceEEEEeEEc---CccccccCCCCCccCCCc
Q 025365 94 YAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPC 127 (254)
Q Consensus 94 ~~~p~l~~vyKlv~~~---g~p~~K~S~~~~K~t~PG 127 (254)
.++|-...|||+.++. |.|++-- |-.+.+|
T Consensus 335 ~GrpQ~TAVy~va~~A~q~gvpviAD----GGiq~~G 367 (503)
T KOG2550|consen 335 CGRPQGTAVYKVAEFANQFGVPCIAD----GGIQNVG 367 (503)
T ss_pred ccCCcccchhhHHHHHHhcCCceeec----CCcCccc
Confidence 4578899999999884 5688743 4344444
No 83
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.26 E-value=8.4 Score=36.19 Aligned_cols=98 Identities=27% Similarity=0.301 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
+++.+.+.++-+.|.. .|=+|+ |+... ..++.+.+.++ ++++.|++.+-.+.+....+.+.|+....
T Consensus 93 ~~~~~~~~~l~eagv~--~I~vd~~~G~~~~-~~~~i~~ik~~--------~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 93 EDDKERAEALVEAGVD--VIVIDSAHGHSVY-VIEMIKFIKKK--------YPNVDVIAGNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred hhHHHHHHHHHhcCCC--EEEEECCCCCcHH-HHHHHHHHHHH--------CCCceEEECCCCCHHHHHHHHhcCCCEEE
Confidence 3556667777676654 444665 55422 23334444443 24688999999999999999999976554
Q ss_pred Eeec------CcccccCCCCccceEEEEeEE-c--Ccccc
Q 025365 84 FGIG------TYLVTCYAQAALGCVFKLVEI-N--KQPRI 114 (254)
Q Consensus 84 fGVG------T~l~t~~~~p~l~~vyKlv~~-~--g~p~~ 114 (254)
.|+| |...+....|.+..++.+.+. + +.|++
T Consensus 162 vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI 201 (325)
T cd00381 162 VGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI 201 (325)
T ss_pred ECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE
Confidence 4544 233333456666665555443 1 34555
No 84
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=75.25 E-value=8.4 Score=38.40 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
+..++.+.+|.+.|..+ |=+|+ |+-.. +.+..+.+.+. ++++.|++.|-.+.+....+.+.|+....
T Consensus 240 ~~~~~~~~~l~~ag~d~--i~id~a~G~s~~-~~~~i~~ik~~--------~~~~~v~aG~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 240 PEDIERAAALIEAGVDV--LVVDSSQGNSIY-QIDMIKKLKSN--------YPHVDIIAGNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred HHHHHHHHHHHHCCCCE--EEEecCCCCchH-HHHHHHHHHhh--------CCCceEEECCcCCHHHHHHHHHcCCCEEE
Confidence 45678888888888765 44555 55332 23334444442 35789999999999999999999976554
Q ss_pred Eeec------CcccccCCCCccceEEEEeEE
Q 025365 84 FGIG------TYLVTCYAQAALGCVFKLVEI 108 (254)
Q Consensus 84 fGVG------T~l~t~~~~p~l~~vyKlv~~ 108 (254)
-||| |++++..+.|.+..++++.++
T Consensus 309 vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~ 339 (495)
T PTZ00314 309 IGMGSGSICITQEVCAVGRPQASAVYHVARY 339 (495)
T ss_pred ECCcCCcccccchhccCCCChHHHHHHHHHH
Confidence 4654 234445567777766666543
No 85
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=74.71 E-value=16 Score=32.80 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=32.4
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
++|-+.|||+++.|..+...| .+.|=||.+++.+.+
T Consensus 165 ~~vAVaGGI~~~~i~~~~~~~--~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGITPEDIPLFKGIG--ADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCCCHHHHHHHhcCC--CCEEEECchhcCCCC
Confidence 689999999999999999877 888999999998764
No 86
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=74.61 E-value=5.7 Score=35.73 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+..|-+-||++.+.|..+.++| +|.|=.||.+....
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~AG--ad~~VaGSalF~~~ 204 (220)
T COG0036 169 DILIEVDGGINLETIKQLAAAG--ADVFVAGSALFGAD 204 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHHcC--CCEEEEEEEEeCCc
Confidence 8889999999999999999999 78888899887754
No 87
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.67 E-value=12 Score=34.22 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=30.3
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .|...|||.++.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aG--Ad~V~igr~ll~ 268 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAG--ASAVQVGTANFY 268 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeEcHHHhc
Confidence 5679999999 899999999888 699999999987
No 88
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=73.44 E-value=16 Score=34.21 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=50.2
Q ss_pred cEEeeC----CCChHHHHHHHHHHHHHHhHhhCCC-------------CC---------CceEEE--EeCCC-CHHHHHH
Q 025365 23 VGIRLD----SGDLAYLSCEARKFFRTIEKEFGVP-------------DF---------EKMSIT--ASNDL-NEETLDA 73 (254)
Q Consensus 23 ~gVRlD----SGDl~~ls~~~r~~ld~~g~~l~~~-------------g~---------~~vkI~--~S~~l-de~~i~~ 73 (254)
.=||.= +||..+-.+.+|.+..+...-.+.. ++ .++.|+ +.||+ +++.+..
T Consensus 143 dmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~ 222 (293)
T PRK04180 143 AMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAAL 222 (293)
T ss_pred CeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHH
Confidence 346666 8998888888888777663322111 11 135665 89999 9999999
Q ss_pred HhhcCCcccEEeecCcccccCC
Q 025365 74 LNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 74 l~~~g~~id~fGVGT~l~t~~~ 95 (254)
+.+.| .|++-||+.+..+.+
T Consensus 223 vme~G--AdgVaVGSaI~ks~d 242 (293)
T PRK04180 223 MMQLG--ADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHhC--CCEEEEcHHhhcCCC
Confidence 99888 788889999986543
No 89
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=73.01 E-value=3.4 Score=36.35 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 37 ~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+++|+++++. | .++.|.+-||++++.+..+.++| +|.|=+||.+..
T Consensus 154 ~~l~~~~~~~-------~-~~~~I~vDGGI~~~~~~~~~~aG--ad~~V~Gs~iF~ 199 (201)
T PF00834_consen 154 RELRKLIPEN-------G-LDFEIEVDGGINEENIKQLVEAG--ADIFVAGSAIFK 199 (201)
T ss_dssp HHHHHHHHHH-------T-CGSEEEEESSESTTTHHHHHHHT----EEEESHHHHT
T ss_pred HHHHHHHHhc-------C-CceEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhC
Confidence 4467777776 5 56789999999999999999999 778888888765
No 90
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=72.49 E-value=21 Score=32.43 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ |.+.+.++...| .|..+|||.++.
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~G--Ad~V~igra~l~ 265 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAG--ASAVQVGTANFV 265 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhhc
Confidence 5679999999 789999999899 699999999987
No 91
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.24 E-value=21 Score=32.82 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=29.3
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++|++. .+.+.++.+.|. +|..++|+.++..
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~-aD~V~igR~~lad 317 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGK-ADLVALGRALLAD 317 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCC-CCeeeecHHHHhC
Confidence 46799999997 888888888732 8899999988874
No 92
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=70.94 E-value=5.6 Score=38.37 Aligned_cols=55 Identities=27% Similarity=0.368 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHhhCCCCCC-ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEE
Q 025365 35 LSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~-~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vy 103 (254)
...++.+.|++. |+. +|++++||+| +...+......| .|.+++||...- +++|++
T Consensus 258 ~l~~a~~~L~~~-------glr~~V~Li~sGgl~t~~dv~kalaLG--AD~v~igt~~li-----AlGC~~ 314 (368)
T PF01645_consen 258 ALARAHQALVKN-------GLRDRVSLIASGGLRTGDDVAKALALG--ADAVYIGTAALI-----ALGCIQ 314 (368)
T ss_dssp HHHHHHHHHHCT-------T-CCCSEEEEESS--SHHHHHHHHHCT---SEEE-SHHHHH-----HCT--S
T ss_pred HHHHHHHHHHHc-------CCCCceEEEEeCCccCHHHHHHHHhcC--CCeeEecchhhh-----hcchHH
Confidence 344577777776 765 4999999998 677777777788 599999999887 467764
No 93
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=70.82 E-value=13 Score=36.16 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.+++|.++||++.+.+..+.+.| +|.|-||+.+..+.
T Consensus 329 ~~~~I~VdGGI~~eti~~l~~aG--ADivVVGsaIf~a~ 365 (391)
T PRK13307 329 GKILVAVAGGVRVENVEEALKAG--ADILVVGRAITKSK 365 (391)
T ss_pred CCCcEEEECCcCHHHHHHHHHcC--CCEEEEeHHHhCCC
Confidence 35789999999999999999988 68899999987643
No 94
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=70.61 E-value=35 Score=27.86 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH---HHHHH-HhhcCCccc
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE---ETLDA-LNKQGHEVD 82 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde---~~i~~-l~~~g~~id 82 (254)
|.-.++..|++.|.++....+=.-|...+...+++.++. .++ ||.|||... +...+ +.+.| .+.
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----------~Dl-iIttGG~g~g~~D~t~~ai~~~g-~~~ 95 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDE----------ADV-VLTTGGTGVGPRDVTPEALEELG-EKE 95 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhC----------CCE-EEECCCCCCCCCccHHHHHHHhC-cEE
Confidence 444566667777877666666566665555555555443 456 777776544 22222 22233 456
Q ss_pred EEeec
Q 025365 83 AFGIG 87 (254)
Q Consensus 83 ~fGVG 87 (254)
.+|||
T Consensus 96 ~~gv~ 100 (144)
T TIGR00177 96 IPGFG 100 (144)
T ss_pred Eeeec
Confidence 66665
No 95
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.33 E-value=9.2 Score=37.34 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
+...+-+.+|.+.|..+ |=+|+.+.. +..+.+++.+.+. -++++.|++.|-.+.+....+.+.|+.....|
T Consensus 152 ~~~~~~v~~lv~aGvDv--I~iD~a~g~--~~~~~~~v~~ik~-----~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDI--LVIDSAHGH--STRIIELVKKIKT-----KYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCE--EEEECCCCC--ChhHHHHHHHHHh-----hCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 55677888888888665 555886532 3333343433322 35678899999999999999999997654455
Q ss_pred ecC------cccccCCCCccceEEEEeE
Q 025365 86 IGT------YLVTCYAQAALGCVFKLVE 107 (254)
Q Consensus 86 VGT------~l~t~~~~p~l~~vyKlv~ 107 (254)
+|. +.++..+.|.+..++.+.+
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~ 250 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYE 250 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHH
Confidence 542 4444445576665555444
No 96
>PRK08508 biotin synthase; Provisional
Probab=68.80 E-value=37 Score=30.97 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCCh--HHHHHHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcc
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDL--AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEV 81 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl--~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~i 81 (254)
....++.|+++.+.|..-..+ .+||.- .....++.++++.+.. =+.++.|.+| |-++++.+++|.+.| +
T Consensus 42 ~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~-----~~p~l~i~~s~G~~~~e~l~~Lk~aG--l 113 (279)
T PRK08508 42 IEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKK-----EVPGLHLIACNGTASVEQLKELKKAG--I 113 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHh-----hCCCcEEEecCCCCCHHHHHHHHHcC--C
Confidence 456777787777777543333 355541 0112223333333211 1246667655 667999999999999 6
Q ss_pred cEEeec
Q 025365 82 DAFGIG 87 (254)
Q Consensus 82 d~fGVG 87 (254)
|++.++
T Consensus 114 d~~~~~ 119 (279)
T PRK08508 114 FSYNHN 119 (279)
T ss_pred CEEccc
Confidence 676664
No 97
>PLN02334 ribulose-phosphate 3-epimerase
Probab=68.33 E-value=6.8 Score=34.56 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+..|++-||++++.+.++.+.| +|++=||+.+....
T Consensus 174 ~~~I~a~GGI~~e~i~~l~~aG--ad~vvvgsai~~~~ 209 (229)
T PLN02334 174 ELDIEVDGGVGPSTIDKAAEAG--ANVIVAGSAVFGAP 209 (229)
T ss_pred CCcEEEeCCCCHHHHHHHHHcC--CCEEEEChHHhCCC
Confidence 4579999999999999999998 79999999987643
No 98
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.58 E-value=8.9 Score=33.36 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=32.6
Q ss_pred ceEEEEeCCCCH-HHHHHHhhcCCcccEEeecCcccccCCCC
Q 025365 57 KMSITASNDLNE-ETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (254)
Q Consensus 57 ~vkI~~S~~lde-~~i~~l~~~g~~id~fGVGT~l~t~~~~p 97 (254)
++.|++.||++. +.+.++.+.| .|+..|||.++.....|
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l~~~~e~~ 195 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEESG 195 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhhhcCcccC
Confidence 456999999987 8899988877 89999999999866544
No 99
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=67.19 E-value=19 Score=31.52 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.6
Q ss_pred ceEEEEeCCCC-HHHHHH-HhhcCCcccEEeecCcc
Q 025365 57 KMSITASNDLN-EETLDA-LNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~-l~~~g~~id~fGVGT~l 90 (254)
++.|+++||+. .+.+.+ +.+.| +|+.-|||.|
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~g--adgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAG--ASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcC--CCEEEEehhh
Confidence 56799999987 677777 66666 8889999876
No 100
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=67.06 E-value=28 Score=30.06 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.6
Q ss_pred CceEEEEeCCC-CHHHHHHHhhc-CCcccEEeecCccccc
Q 025365 56 EKMSITASNDL-NEETLDALNKQ-GHEVDAFGIGTYLVTC 93 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~-g~~id~fGVGT~l~t~ 93 (254)
.++.|+++||+ +.+.+.++.+. | +|+..+|+.+...
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~g--ad~V~igr~~l~~ 219 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTG--VDGVMIGRGALGN 219 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcC--CCEEEEcHHhHhC
Confidence 46789999999 78899998876 4 8999999988874
No 101
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=66.10 E-value=24 Score=33.58 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=34.5
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeE
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~ 107 (254)
+.|+++|+++.+.+.+++++|. +|..|+|..++.. | +++-|+.+
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~-~D~V~~gR~~iad---P--d~~~k~~~ 336 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGL-IDAVAFGRDYIAN---P--DLVARLQR 336 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCC-CCEEEECHHhhhC---c--cHHHHHhc
Confidence 4588888899999999998876 8999999999873 3 55555543
No 102
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=65.72 E-value=25 Score=30.40 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=31.5
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++.|+++||++ .+.+.++.+.| +|++-||+.|+...
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai~~~~ 208 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAG--ADAVLIGESLMRAP 208 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 457899999995 59999999988 79999999998754
No 103
>PRK08005 epimerase; Validated
Probab=64.93 E-value=10 Score=33.75 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=29.4
Q ss_pred EEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 59 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 59 kI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.|-+-||++++.|..+.+.| +|.|=+||.+...
T Consensus 165 ~I~VDGGI~~~~i~~l~~aG--ad~~V~GsaiF~~ 197 (210)
T PRK08005 165 ECWADGGITLRAARLLAAAG--AQHLVIGRALFTT 197 (210)
T ss_pred CEEEECCCCHHHHHHHHHCC--CCEEEEChHhhCC
Confidence 59999999999999999999 6888889998753
No 104
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=63.77 E-value=6.1 Score=37.89 Aligned_cols=92 Identities=24% Similarity=0.243 Sum_probs=64.9
Q ss_pred HHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 8 FCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 8 ai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
..+.+.+|-+.|..+.-|..=-|.-..+...++++ .+ -|+++.||+.|=-+.+....|.+.|+...--|||
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~i-k~--------~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKI-KK--------KFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHH-HH--------HSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHH-HH--------hCCCceEEecccCCHHHHHHHHHcCCCEEEEecc
Confidence 56777888887765544443347766666554433 33 2568999999999999999999999777677877
Q ss_pred ------CcccccCCCCccceEEEEeEE
Q 025365 88 ------TYLVTCYAQAALGCVFKLVEI 108 (254)
Q Consensus 88 ------T~l~t~~~~p~l~~vyKlv~~ 108 (254)
|+.++..+.|-+..||++.+.
T Consensus 180 pGsiCtTr~v~GvG~PQ~tAv~~~a~~ 206 (352)
T PF00478_consen 180 PGSICTTREVTGVGVPQLTAVYECAEA 206 (352)
T ss_dssp SSTTBHHHHHHSBSCTHHHHHHHHHHH
T ss_pred CCcccccccccccCCcHHHHHHHHHHH
Confidence 344556788999999998876
No 105
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.66 E-value=16 Score=36.67 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCccc
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl-~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id 82 (254)
|+..+.+.+.+|.+.|..+ |=+||-.- .....+..+.+.+. +. .++.|++.|=++.+....+.+.|+...
T Consensus 239 ~~~~~~~ra~~Lv~aGvd~--i~vd~a~g~~~~~~~~i~~ir~~---~~----~~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 239 NTRDYAERVPALVEAGADV--LCIDSSEGYSEWQKRTLDWIREK---YG----DSVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred ChhhHHHHHHHHHHhCCCe--EeecCcccccHHHHHHHHHHHHh---CC----CCceEEeccccCHHHHHHHHHcCCCEE
Confidence 4557788899998888654 55676321 11223333444432 21 348899999999999999999998765
Q ss_pred EEeecCc------ccccCCCCccceEEEEeEE
Q 025365 83 AFGIGTY------LVTCYAQAALGCVFKLVEI 108 (254)
Q Consensus 83 ~fGVGT~------l~t~~~~p~l~~vyKlv~~ 108 (254)
-.|+|.- .++..+.|.+..+|++++.
T Consensus 310 ~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a 341 (502)
T PRK07107 310 KVGIGGGSICITREQKGIGRGQATALIEVAKA 341 (502)
T ss_pred EECCCCCcCcccccccCCCccHHHHHHHHHHH
Confidence 5677654 4555667888888887763
No 106
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.24 E-value=33 Score=32.10 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.4
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++++++ +.+.+.++.++|. +|..++|..++...
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~-aD~V~lgR~~iadP 329 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGA-VDGIGLARPLALEP 329 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeeChHhhhCc
Confidence 4568888888 6888888888765 88999998888743
No 107
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=62.93 E-value=11 Score=32.46 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=43.8
Q ss_pred HHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhc--CCcccEEeecCcccccCC-------CCccceEEEEeE
Q 025365 38 EARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGTYLVTCYA-------QAALGCVFKLVE 107 (254)
Q Consensus 38 ~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~--g~~id~fGVGT~l~t~~~-------~p~l~~vyKlv~ 107 (254)
++|+.|+++ ..++. .-..+-|..|||+|=..|..+... +.++..|-+|..-....+ +..+++-...++
T Consensus 1 ~~r~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~ 78 (255)
T PF00733_consen 1 ELRELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIE 78 (255)
T ss_dssp HHHHHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceee
Confidence 457777777 44444 236788999999999999999876 567888888876655211 234555544445
Q ss_pred Ec
Q 025365 108 IN 109 (254)
Q Consensus 108 ~~ 109 (254)
++
T Consensus 79 ~~ 80 (255)
T PF00733_consen 79 LD 80 (255)
T ss_dssp E-
T ss_pred ec
Confidence 54
No 108
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=62.83 E-value=25 Score=31.86 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=28.8
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
..|..||..+.+.+..+.+.| .|++-|||.++.+.+
T Consensus 213 ~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI~~~~d 248 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAG--ADAVLVGESLMRADD 248 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcC--CCEEEECHHHcCCCC
Confidence 334455656899999999988 699999999998654
No 109
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=62.65 E-value=25 Score=33.99 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++.+.+.++.+.| +|++.||+.|....
T Consensus 162 ~iPI~a~GGI~~~n~~~~l~aG--Adgv~vGsaI~~~~ 197 (430)
T PRK07028 162 SIPIAVAGGLDAETAAKAVAAG--ADIVIVGGNIIKSA 197 (430)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEChHHcCCC
Confidence 3779999999999999999999 78999999998753
No 110
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=62.01 E-value=30 Score=31.17 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHH--HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccE
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAY--LSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~--ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~ 83 (254)
+.+.+|+++.+.|.. +|-+|.+.... ...++.+.+.++ ++++.||.+||+. .+.+.++.+.| .|+
T Consensus 149 ~~~~~a~~l~~aGad--~i~Vd~~~~g~~~a~~~~I~~i~~~--------~~~ipIIgNGgI~s~eda~e~l~~G--Ad~ 216 (231)
T TIGR00736 149 DELIDALNLVDDGFD--GIHVDAMYPGKPYADMDLLKILSEE--------FNDKIIIGNNSIDDIESAKEMLKAG--ADF 216 (231)
T ss_pred hHHHHHHHHHHcCCC--EEEEeeCCCCCchhhHHHHHHHHHh--------cCCCcEEEECCcCCHHHHHHHHHhC--CCe
Confidence 677888888888764 55666544321 233333333332 2346699999975 47777777777 677
Q ss_pred EeecCcccc
Q 025365 84 FGIGTYLVT 92 (254)
Q Consensus 84 fGVGT~l~t 92 (254)
.-||+.+..
T Consensus 217 VmvgR~~l~ 225 (231)
T TIGR00736 217 VSVARAILK 225 (231)
T ss_pred EEEcHhhcc
Confidence 778876653
No 111
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=60.50 E-value=24 Score=31.99 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.+.+. ++- --.+++|+..|+++.+-+.++.+++ .+|++.||+.-..
T Consensus 180 ev~~~ir~~l~~~---~~~-~~~~~~IlYGGSV~~~N~~~l~~~~-~vDG~LVG~Asl~ 233 (242)
T cd00311 180 EVHAFIRKLLAEL---YGE-VAEKVRILYGGSVNPENAAELLAQP-DIDGVLVGGASLK 233 (242)
T ss_pred HHHHHHHHHHHHh---ccc-ccCceeEEECCCCCHHHHHHHhcCC-CCCEEEeehHhhC
Confidence 4445566666653 211 1257999999999999999999875 4999999987653
No 112
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=60.44 E-value=28 Score=32.55 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.6
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .|...|||.++.
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~aG--Ad~V~vg~~~~~ 314 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIRAG--ASLVQLYTGLVY 314 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCHHhccHHHHh
Confidence 5789999999 888999998888 888899998864
No 113
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.28 E-value=19 Score=34.05 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHH-------HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhh
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAY-------LSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNK 76 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~-------ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~ 76 (254)
...++++++.|.+.|..+..| ..|.... .....-+.+.++ + . .++.|+++|++ +.+.+.++.+
T Consensus 234 ~ee~~~i~~~L~~~GvD~I~V--s~g~~~~~~~~~~~~~~~~~~~ik~~---~---~-~~iPVi~~Ggi~t~e~ae~~l~ 304 (353)
T cd04735 234 MEDTLALVDKLADKGLDYLHI--SLWDFDRKSRRGRDDNQTIMELVKER---I---A-GRLPLIAVGSINTPDDALEALE 304 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEe--ccCccccccccCCcchHHHHHHHHHH---h---C-CCCCEEEECCCCCHHHHHHHHH
Confidence 467889999998888654333 2221100 001111112222 1 1 35679999999 8999999998
Q ss_pred cCCcccEEeecCccccc
Q 025365 77 QGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 77 ~g~~id~fGVGT~l~t~ 93 (254)
.| +|..++|..++..
T Consensus 305 ~g--aD~V~~gR~liad 319 (353)
T cd04735 305 TG--ADLVAIGRGLLVD 319 (353)
T ss_pred cC--CChHHHhHHHHhC
Confidence 86 8999999999874
No 114
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=60.11 E-value=38 Score=30.35 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEe
Q 025365 8 FCAVALALNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 8 ai~va~~l~~~G~~~~gVRlD-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fG 85 (254)
+.+-|++.+.+|.+ -|=+| ||.. .-.+..+.+.+. ..++.|++.||+ +.+.++++.+.| .|..-
T Consensus 137 ~~ayA~aae~~g~~--ivyLe~SG~~--~~~e~I~~v~~~--------~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VV 202 (219)
T cd02812 137 AAAYALAAEYLGMP--IVYLEYSGAY--GPPEVVRAVKKV--------LGDTPLIVGGGIRSGEQAKEMAEAG--ADTIV 202 (219)
T ss_pred HHHHHHHHHHcCCe--EEEeCCCCCc--CCHHHHHHHHHh--------cCCCCEEEeCCCCCHHHHHHHHHcC--CCEEE
Confidence 34445555556744 45566 5543 222223333332 115679999999 889999999888 68899
Q ss_pred ecCccccc
Q 025365 86 IGTYLVTC 93 (254)
Q Consensus 86 VGT~l~t~ 93 (254)
|||.+.+.
T Consensus 203 VGsai~~~ 210 (219)
T cd02812 203 VGNIVEED 210 (219)
T ss_pred ECchhhCC
Confidence 99999874
No 115
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=59.12 E-value=40 Score=31.76 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=30.8
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+++|++ +.+.+.++.+.|. +|..++|..++...
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~-~D~V~~gR~~ladP 322 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGH-ADMVGMTRAHIADP 322 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCC-CCeeeecHHhHhCc
Confidence 4569999998 8899999987654 99999999998843
No 116
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=59.02 E-value=11 Score=30.71 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.6
Q ss_pred CceEEEEeCCCCH-HHHHHHhhcCCcccEEeecC
Q 025365 56 EKMSITASNDLNE-ETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 56 ~~vkI~~S~~lde-~~i~~l~~~g~~id~fGVGT 88 (254)
.++.|+++||++. +.+.++.+.| .|+++||+
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 4577999999988 9999999888 88888885
No 117
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=58.61 E-value=53 Score=31.63 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHhhCCCCC-CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 37 CEARKFFRTIEKEFGVPDF-EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 37 ~~~r~~ld~~g~~l~~~g~-~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++++.+.+. |. .++.|++|||+ +...+.+....| .|+.++||.+..
T Consensus 271 ~~v~~~~~~~-------~~~~~i~viasGGI~~g~Dv~kalaLG--Ad~V~ig~~~l~ 319 (392)
T cd02808 271 ARAHQALVKN-------GLRDRVSLIASGGLRTGADVAKALALG--ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHc-------CCCCCCeEEEECCCCCHHHHHHHHHcC--CCeeeechHHHH
Confidence 3455555554 33 46899999999 889999999999 889999999987
No 118
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=58.27 E-value=46 Score=30.58 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=25.4
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+. .+.+.++...| .|+..|||.+..
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG--A~~V~i~ta~~~ 286 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG--ASVVQVCTAVMN 286 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CChheEceeecc
Confidence 67899999984 56666666788 667778887765
No 119
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=57.72 E-value=41 Score=35.30 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=50.3
Q ss_pred hhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 16 NDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 16 ~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+.|..+.+|=-=.++-..+...+.+.|+++ |.++++|++.|.+-+.....+.+.|+ -..|.+||.+..
T Consensus 630 ~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~-------G~~~v~vl~GG~~~~~~~~~l~~aGv-D~~i~~g~d~~~ 698 (714)
T PRK09426 630 VENDVHVVGVSSLAAGHKTLVPALIEALKKL-------GREDIMVVVGGVIPPQDYDFLYEAGV-AAIFGPGTVIAD 698 (714)
T ss_pred HHcCCCEEEEeccchhhHHHHHHHHHHHHhc-------CCCCcEEEEeCCCChhhHHHHHhCCC-CEEECCCCCHHH
Confidence 3445666666433356666788889999998 87889999998866666788888883 346789988754
No 120
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=57.04 E-value=41 Score=30.33 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=30.7
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++ .+.+.++...| .|+.+|||.++..
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~G--Ad~V~vg~a~~~~ 278 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAG--ASAVQVATALMWD 278 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--ccHheEcHHHHhc
Confidence 67899999996 78899988888 8999999998873
No 121
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.76 E-value=90 Score=27.95 Aligned_cols=104 Identities=14% Similarity=-0.011 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc-ccE
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE-VDA 83 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~-id~ 83 (254)
...|+.++++|.+.|.+..=|-+.|.+-...-+++++.+.+ .++++.|=+.-=+|.+.++...+.|+. +.+
T Consensus 26 ~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~--------~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 26 VEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAK--------ELPGMILGVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHh--------hCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 34567777777777777777777776644444444444433 234454444555666666666666553 111
Q ss_pred EeecCcccc---cCCCCccceEEEEeEE-----cCcccccc
Q 025365 84 FGIGTYLVT---CYAQAALGCVFKLVEI-----NKQPRIKL 116 (254)
Q Consensus 84 fGVGT~l~t---~~~~p~l~~vyKlv~~-----~g~p~~K~ 116 (254)
=|+-..++. ..+.|.+-+++-..|+ .|-..+|+
T Consensus 98 P~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 98 PLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 122222221 1234555555555554 24455665
No 122
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=55.61 E-value=27 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.6
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 58 vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
..|++.+|+ +.+.+..+.+.| .|+|=|||.++.
T Consensus 186 ~~i~v~gGI~~~e~i~~~~~~g--aD~vvvGSai~~ 219 (244)
T PRK13125 186 KYLVVGFGLDSPEDARDALSAG--ADGVVVGTAFIE 219 (244)
T ss_pred CCEEEeCCcCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 358999999 999999999888 889999999986
No 123
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=55.57 E-value=36 Score=29.82 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.2
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+++||+. .+.+.++.+.| ++++-|||.+....
T Consensus 193 ~iPvia~GGI~~~~di~~~~~~G--a~gv~vgsa~~~~~ 229 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKEAG--AAGVVVGSALYKGK 229 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEEEHHHhcCC
Confidence 46799999999 88899988877 78899999997743
No 124
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=55.32 E-value=34 Score=31.45 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld 67 (254)
.||--+|+.|.+.|+.+.=++.=--|+..+...+|..+.. .++ ||.||||-
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r----------~D~-vI~tGGLG 71 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER----------ADV-VITTGGLG 71 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC----------CCE-EEECCCcC
Confidence 3888899999999999877776666777777777777765 467 89999874
No 125
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=55.31 E-value=77 Score=28.02 Aligned_cols=64 Identities=22% Similarity=0.168 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
...++.++++|.+.|.+..=|-++|.+-....++++ + -|+++.|=+..=+|.+..+...+.|+.
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~----~--------~~~~~~vGAGTVl~~~~a~~a~~aGA~ 82 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLR----K--------EVPDALIGAGTVLNPEQLRQAVDAGAQ 82 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHH----H--------HCCCCEEEEEeCCCHHHHHHHHHcCCC
Confidence 467889999999999999899999988444333333 3 135677777788888888888888864
No 126
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.13 E-value=42 Score=32.27 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhcCCCc-cEEe----eCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 6 PNFCAVALALNDLGYKA-VGIR----LDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~-~gVR----lDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
..++++|+.+++.|.++ .|-- .-..+..-+..+-.++|.++..++|++-++.+ .|+..+..+.+.
T Consensus 115 eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev-------~d~~~v~~~~~~--- 184 (352)
T PRK13396 115 EMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEV-------MDAADLEKIAEV--- 184 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEee-------CCHHHHHHHHhh---
Confidence 56899999999988764 1111 22234445677889999999888887755555 999999999875
Q ss_pred ccEEeecCccccc
Q 025365 81 VDAFGIGTYLVTC 93 (254)
Q Consensus 81 id~fGVGT~l~t~ 93 (254)
+|.+=||+...++
T Consensus 185 ~d~lqIga~~~~n 197 (352)
T PRK13396 185 ADVIQVGARNMQN 197 (352)
T ss_pred CCeEEECcccccC
Confidence 7999999999985
No 127
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=55.11 E-value=17 Score=32.33 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=30.6
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|.+-||++++.+..+.+.| +|.|=||+.+..+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aG--ad~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAG--ANVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcC--CCEEEEchHHhCC
Confidence 4779999999999999999999 6888899998754
No 128
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=54.80 E-value=32 Score=32.46 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=27.6
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++|++ +.+.+.+++++|. .|..++|..++..
T Consensus 275 ~ipVi~~G~i~~~~~a~~~l~~g~-~D~V~~gR~~iad 311 (337)
T PRK13523 275 NIATGAVGLITSGAQAEEILQNNR-ADLIFIGRELLRN 311 (337)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCC-CChHHhhHHHHhC
Confidence 4568888887 6777888887764 7888888888774
No 129
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=54.22 E-value=75 Score=27.06 Aligned_cols=64 Identities=28% Similarity=0.282 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
..+++.++++|.+.|.+..=||..+++-.. ..+.+.+ .++++.|-+..=++.+.+....+.|+.
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~~~~----~i~~l~~--------~~~~~~iGag~v~~~~~~~~a~~~Ga~ 78 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPGALE----AIRALRK--------EFPEALIGAGTVLTPEQADAAIAAGAQ 78 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHH----HHHHHHH--------HCCCCEEEEEeCCCHHHHHHHHHcCCC
Confidence 357888999999999998888888887333 3333333 235677888888889999999887754
No 130
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=53.33 E-value=30 Score=32.63 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhhcCCCccEE-------e--eC---CC--ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHH
Q 025365 5 VPNFCAVALALNDLGYKAVGI-------R--LD---SG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEE 69 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gV-------R--lD---SG--Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~ 69 (254)
...++++++.|.+.|..+.-| | .+ ++ ....+++++ .++ .++.|+++|++ +.+
T Consensus 223 ~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~i----k~~---------v~iPVi~~G~i~~~~ 289 (353)
T cd02930 223 WEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKL----KRA---------VDIPVIASNRINTPE 289 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHH----HHh---------CCCCEEEcCCCCCHH
Confidence 456899999998888543322 1 11 11 111222222 222 35679999998 788
Q ss_pred HHHHHhhcCCcccEEeecCcccccC
Q 025365 70 TLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 70 ~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.+.++.+.|. +|..++|..++...
T Consensus 290 ~a~~~i~~g~-~D~V~~gR~~l~dP 313 (353)
T cd02930 290 VAERLLADGD-ADMVSMARPFLADP 313 (353)
T ss_pred HHHHHHHCCC-CChhHhhHHHHHCc
Confidence 8999988765 89999999998743
No 131
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.17 E-value=62 Score=30.48 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhh-cCCCccEEeeCCCC---------hHHHHHHHHHHHHHHhH-hhCC-CC--------C----------
Q 025365 6 PNFCAVALALND-LGYKAVGIRLDSGD---------LAYLSCEARKFFRTIEK-EFGV-PD--------F---------- 55 (254)
Q Consensus 6 ~nai~va~~l~~-~G~~~~gVRlDSGD---------l~~ls~~~r~~ld~~g~-~l~~-~g--------~---------- 55 (254)
.-.++|..+.++ .|..+.|||+-+.| -..-+.++-++|.++|. -+++ .| +
T Consensus 203 rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~ 282 (338)
T cd02933 203 RFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRK 282 (338)
T ss_pred hHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHH
Confidence 345667777665 45545788885432 12334455566655431 1111 11 1
Q ss_pred -CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 56 -EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 56 -~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.++.|+++|+++.+.+.++.+.|. +|..++|..++..
T Consensus 283 ~~~ipvi~~G~i~~~~a~~~l~~g~-~D~V~~gR~~lad 320 (338)
T cd02933 283 AFKGPLIAAGGYDAESAEAALADGK-ADLVAFGRPFIAN 320 (338)
T ss_pred HcCCCEEEECCCCHHHHHHHHHcCC-CCEEEeCHhhhhC
Confidence 245799999999999999888754 8999999998874
No 132
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.40 E-value=39 Score=32.49 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=35.4
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccc
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~ 100 (254)
.++.||++||+ +-..|.+-...| .|+..+||.++.+...|.-.
T Consensus 255 ~~vpVIAdGGI~~~~diakAlalG--Ad~Vm~Gs~fa~t~Espg~~ 298 (368)
T PRK08649 255 RYVHVIADGGIGTSGDIAKAIACG--ADAVMLGSPLARAAEAPGRG 298 (368)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC--CCeecccchhcccccCCCcc
Confidence 47889999999 777888888888 78888999999987766544
No 133
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=52.21 E-value=76 Score=28.70 Aligned_cols=64 Identities=14% Similarity=0.274 Sum_probs=38.7
Q ss_pred cCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 18 LGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 18 ~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+|.++.-+===||-....+..+++.-+. ..++.+|++||++ .+.+.++.+.| .|..-|||.+-.
T Consensus 152 ~g~~~iYLEaGSGa~~~v~~~v~~~~~~---------~~~~~LivGGGIrs~e~A~~~~~aG--AD~IVvGn~iee 216 (230)
T PF01884_consen 152 LGMPIIYLEAGSGAYGPVPEEVIAAVKK---------LSDIPLIVGGGIRSPEQAREMAEAG--ADTIVVGNAIEE 216 (230)
T ss_dssp TT-SEEEEE--TTSSS-HHHHHHHHHHH---------SSSSEEEEESS--SHHHHHHHHCTT--SSEEEESCHHHH
T ss_pred hCCCEEEEEeCCCCCCCccHHHHHHHHh---------cCCccEEEeCCcCCHHHHHHHHHCC--CCEEEECCEEEE
Confidence 5666544444455444444555554444 3678899999995 67788888888 677778887644
No 134
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=51.83 E-value=47 Score=28.23 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld 67 (254)
|+-.++..|.+.|.++..+++=.-|...+...+++.++. .++ |+.|||+-
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~----------~dl-VIttGG~G 69 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASER----------ADL-VITTGGLG 69 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhC----------CCE-EEECCCCC
Confidence 455666777778877766666666655555555555543 355 77777664
No 135
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=51.55 E-value=48 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=23.7
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~ 89 (254)
++.|++.||+ +.+.+.++...| .|+.-||+.
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~G--aD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYG--ADMVSVARA 222 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcC--CCEEEEcCC
Confidence 5678888888 777888887777 777777776
No 136
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=51.47 E-value=1.1e+02 Score=30.20 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=49.0
Q ss_pred CccEEeeCCC------ChHHHHHHHHHHHHHHhHhhCCCCCC-ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 21 KAVGIRLDSG------DLAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 21 ~~~gVRlDSG------Dl~~ls~~~r~~ld~~g~~l~~~g~~-~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
...-+--||| .+..|.-.++++.|+...+. |+. ++.|++.||| |...+......| .|+.=+||....
T Consensus 179 D~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~---~~~~~ipViAAGGI~tg~~vaAA~alG--Ad~V~~GT~fla 253 (418)
T cd04742 179 DDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARY---GYRRPIRVGAAGGIGTPEAAAAAFALG--ADFIVTGSINQC 253 (418)
T ss_pred CEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhcc---ccCCCceEEEECCCCCHHHHHHHHHcC--CcEEeeccHHHh
Confidence 4444446664 24445555665555542222 444 6899999999 999999999999 567779999988
Q ss_pred cCCCC
Q 025365 93 CYAQA 97 (254)
Q Consensus 93 ~~~~p 97 (254)
|..++
T Consensus 254 t~Ea~ 258 (418)
T cd04742 254 TVEAG 258 (418)
T ss_pred Ccccc
Confidence 76443
No 137
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=51.26 E-value=76 Score=29.79 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=32.6
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCCC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~p 97 (254)
++.||++||+. ...|.+....| .|+..|||.++.+...|
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAG--ADAVMLGSLLAGTDESP 236 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcC--CCEEEecchhcccccCC
Confidence 46799999996 68888888888 67889999999977655
No 138
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=50.61 E-value=30 Score=31.42 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=30.0
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+..|++.+|++ .+.+.++.+.| .|++-|||.++.
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~G--ADgvVvGSaiv~ 232 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAG--ADGVIVGSAIVK 232 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 44699999997 99999999988 689999999986
No 139
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=50.30 E-value=48 Score=33.94 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=27.5
Q ss_pred CCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecCc
Q 025365 55 FEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 55 ~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT~ 89 (254)
..++-|++|+|.+. ..++.|.+.|+.+-++|||..
T Consensus 149 vpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 149 AIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred CceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 34677999999962 235778888999999999973
No 140
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=48.96 E-value=51 Score=30.82 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=30.2
Q ss_pred eEEE--EeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 58 MSIT--ASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 58 vkI~--~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+.|+ +.||+ +++.+..+.+.| +|++-||+.+..+.
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGSAI~~a~ 232 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSE 232 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHhhcCC
Confidence 5565 99999 999999999988 88999999998754
No 141
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=48.59 E-value=18 Score=34.60 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.||+-||+|++.+.++...| .++++|++.+..+.
T Consensus 294 ~iPv~AiGGI~~~ni~~l~~~G--a~gVAvisaI~~a~ 329 (347)
T PRK02615 294 PIPWFAIGGIDKSNIPEVLQAG--AKRVAVVRAIMGAE 329 (347)
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CcEEEEeHHHhCCC
Confidence 4679999999999999999988 88999999998753
No 142
>PRK03670 competence damage-inducible protein A; Provisional
Probab=48.20 E-value=49 Score=30.13 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l 66 (254)
|+-.++..|.+.|+.+..+++=.-|...+...+++.+.+. .++ ||.|||+
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~---------~Dl-VIttGGl 70 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRK---------PEV-LVISGGL 70 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCC---------CCE-EEECCCc
Confidence 6667888899999988777776667666666666655431 356 8888875
No 143
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=47.58 E-value=70 Score=30.63 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCCh-----------------HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDL-----------------AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL- 66 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl-----------------~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l- 66 (254)
+..++++++.|.+.|..+.-| -.|.. ..+++++++ + -++.|+++|++
T Consensus 251 ~e~~~~~~~~l~~~gvD~l~v--s~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~----~---------~~~pvi~~G~i~ 315 (382)
T cd02931 251 LEEGLKAAKILEEAGYDALDV--DAGSYDAWYWNHPPMYQKKGMYLPYCKALKE----V---------VDVPVIMAGRME 315 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEe--CCCCCcccccccCCccCCcchhHHHHHHHHH----H---------CCCCEEEeCCCC
Confidence 456789999998888654333 22221 122222222 2 24569999999
Q ss_pred CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 67 NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 67 de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+.+.+.++++.|. .|..|+|..++...
T Consensus 316 ~~~~~~~~l~~g~-~D~V~~gR~~ladP 342 (382)
T cd02931 316 DPELASEAINEGI-ADMISLGRPLLADP 342 (382)
T ss_pred CHHHHHHHHHcCC-CCeeeechHhHhCc
Confidence 7888999888765 89999999998843
No 144
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=47.36 E-value=40 Score=31.52 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=42.2
Q ss_pred CCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCC
Q 025365 19 GYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (254)
Q Consensus 19 G~~~~gVRl-DSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~ 96 (254)
|..-.|=|- +.+++..|..++++.++ +.|++.||| |-..|...+..| .|+.=+||.++.+...
T Consensus 164 G~eAGGH~g~~~~~~~~L~~~v~~~~~-------------iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 164 GPEAGGHRGFEVGSTFSLLPQVRDAVD-------------IPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEES 228 (330)
T ss_dssp -TTSSEE---SSG-HHHHHHHHHHH-S-------------S-EEEESS--SHHHHHHHHHCT---SEEEESHHHHTSTTS
T ss_pred ccccCCCCCccccceeeHHHHHhhhcC-------------CcEEEecCcCCHHHHHHHHHcC--CCEeecCCeEEecccc
Confidence 444455566 45566667666666553 679999998 888899999999 7888999999987654
Q ss_pred C
Q 025365 97 A 97 (254)
Q Consensus 97 p 97 (254)
+
T Consensus 229 ~ 229 (330)
T PF03060_consen 229 G 229 (330)
T ss_dssp -
T ss_pred c
Confidence 4
No 145
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=47.11 E-value=38 Score=33.92 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl-~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
+.+.+-+.+|.+.|.. .|=+|+.+= ........+.+.+ -++++.|++.|=.+.+....+.+.|+....-
T Consensus 247 ~~~~~r~~~l~~ag~d--~i~iD~~~g~~~~~~~~i~~ik~--------~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 247 ESDKERLEHLVKAGVD--VVVLDSSQGDSIYQLEMIKYIKK--------TYPELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred ccHHHHHHHHHHcCCC--EEEEeCCCCCcHHHHHHHHHHHH--------hCCCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 4667778888888865 566788541 1222233444444 2467889999999999999999999654444
Q ss_pred eec------CcccccCCCCccceEEEEeEE---cCccccccCCCCCccCCCcc-cceeeecCCCCceeEEEEecCCC
Q 025365 85 GIG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENE 151 (254)
Q Consensus 85 GVG------T~l~t~~~~p~l~~vyKlv~~---~g~p~~K~S~~~~K~t~PG~-K~vyR~~d~~g~~~~D~i~l~~e 151 (254)
|+| |+..+..+.|.+..++.+.++ -+.|++=- |-...||. ...+.. ..++.++.-.++..+|
T Consensus 317 g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIad----GGI~~~~di~kAla~-GA~~V~vGs~~~~t~E 388 (505)
T PLN02274 317 GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIAD----GGISNSGHIVKALTL-GASTVMMGSFLAGTTE 388 (505)
T ss_pred CCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEe----CCCCCHHHHHHHHHc-CCCEEEEchhhccccc
Confidence 554 444443344554444444433 13455432 33444441 111111 2344445555555555
No 146
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=46.96 E-value=49 Score=33.45 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC---------------CcccEEeecCc
Q 025365 31 DLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG---------------HEVDAFGIGTY 89 (254)
Q Consensus 31 Dl~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g---------------~~id~fGVGT~ 89 (254)
+......++|+.|.++ ..++..+ ..+-++.|||||=..|..+..+- .++..|-||..
T Consensus 204 ~~~~~~~~lr~~L~~aV~~rl~sd--vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 204 DNVTDKNELRDALEAAVKKRLMSD--VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC--CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 3445567799999998 6666543 46779999999999999887532 25778888864
No 147
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=46.56 E-value=42 Score=32.34 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEE
Q 025365 40 RKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEI 108 (254)
Q Consensus 40 r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~ 108 (254)
++.+++. |-..+.||++||+ +-..|.+....| .|+..|||.++....+|--++-+-..+.
T Consensus 245 ~~~~~e~-------g~r~vpVIAdGGI~tg~di~kAlAlG--AdaV~iGt~~a~a~Eapg~~~~w~~~~~ 305 (369)
T TIGR01304 245 RDYLDET-------GGRYVHVIADGGIETSGDLVKAIACG--ADAVVLGSPLARAAEAPGRGYFWPAAAA 305 (369)
T ss_pred HHHHHhc-------CCCCceEEEeCCCCCHHHHHHHHHcC--CCEeeeHHHHHhhhcCCCCCCccchhhc
Confidence 4456665 4346889999998 456677777788 7899999999998877776665544443
No 148
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=45.99 E-value=1.1e+02 Score=30.34 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHhHhhCCCCCC-ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCC
Q 025365 31 DLAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (254)
Q Consensus 31 Dl~~ls~~~r~~ld~~g~~l~~~g~~-~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~ 96 (254)
.+..|...++++-|+...+. ++. .+.|++.||| |...+......| .|+.=+||.+..|...
T Consensus 200 ~~~~Llp~i~~lrd~v~~~~---~y~~~VpViAAGGI~t~~~vaAAlaLG--AdgV~~GT~flat~Es 262 (444)
T TIGR02814 200 PLVVLLPAIIRLRDTLMRRY---GYRKPIRVGAAGGIGTPEAAAAAFMLG--ADFIVTGSVNQCTVEA 262 (444)
T ss_pred cHHHHHHHHHHHHHHHhhcc---cCCCCceEEEeCCCCCHHHHHHHHHcC--CcEEEeccHHHhCccc
Confidence 45566666655545542222 343 5889999999 999999999999 6777899999887543
No 149
>PRK14567 triosephosphate isomerase; Provisional
Probab=45.70 E-value=74 Score=29.15 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=31.3
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++++|+..|+.+++-+.+|.+++ .+|++-||+.-..
T Consensus 201 ~~v~IlYGGSV~~~N~~~l~~~~-diDG~LVGgasL~ 236 (253)
T PRK14567 201 KNIKIVYGGSLKAENAKDILSLP-DVDGGLIGGASLK 236 (253)
T ss_pred ccceEEEcCcCCHHHHHHHHcCC-CCCEEEeehhhhc
Confidence 57999999999999999998764 3999999987654
No 150
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.69 E-value=34 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=31.5
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.+..|++..|++ .+.++++.+.| .|++=|||.++..
T Consensus 201 t~~Pi~vGFGI~~~e~~~~~~~~G--ADGvVVGSalv~~ 237 (263)
T CHL00200 201 TNKPIILGFGISTSEQIKQIKGWN--INGIVIGSACVQI 237 (263)
T ss_pred cCCCEEEECCcCCHHHHHHHHhcC--CCEEEECHHHHHH
Confidence 567799999999 99999999888 7888899999763
No 151
>PLN02429 triosephosphate isomerase
Probab=45.49 E-value=49 Score=31.33 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 33 AYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 33 ~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+....+|+.|.+. +.+. -++++|+..|+++..-+.+|..+ ..+|+|.||+.-..
T Consensus 242 ~~v~~~IR~~l~~~~~~~v----a~~irILYGGSV~~~N~~el~~~-~diDG~LVGgASL~ 297 (315)
T PLN02429 242 QEVHVAVRGWLKKNVSEEV----ASKTRIIYGGSVNGGNSAELAKE-EDIDGFLVGGASLK 297 (315)
T ss_pred HHHHHHHHHHHHHHhhhhh----ccCceEEEcCccCHHHHHHHhcC-CCCCEEEeecceec
Confidence 34444567666553 1111 15699999999999999999864 23999999998764
No 152
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.07 E-value=82 Score=28.14 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeCCCC-hHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccE
Q 025365 7 NFCAVALALNDLGYK-AVGIRLDSGD-LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (254)
Q Consensus 7 nai~va~~l~~~G~~-~~gVRlDSGD-l~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~ 83 (254)
+.+++|+.+.+.|.. +.-+=+|... ....-..+.+.+.++ .++.|+++||+. .+.+.++...| ++.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---------~~~pv~~~GGi~s~~d~~~~~~~G--a~~ 99 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET---------VFIPLTVGGGIKSIEDVDKLLRAG--ADK 99 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh---------cCCCEEEECCCCCHHHHHHHHHcC--CCE
Confidence 678888888887754 3333334321 111112222222221 346799999997 99999999888 777
Q ss_pred EeecCccccc
Q 025365 84 FGIGTYLVTC 93 (254)
Q Consensus 84 fGVGT~l~t~ 93 (254)
.-|||.+..+
T Consensus 100 vivgt~~~~~ 109 (254)
T TIGR00735 100 VSINTAAVKN 109 (254)
T ss_pred EEEChhHhhC
Confidence 8899999874
No 153
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=45.06 E-value=66 Score=30.48 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
+.++...+|-+.|.....|=+|+ |. |..+.+.+.+.... ++..-|++.|=.+.+....|.+.|+....-
T Consensus 94 e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~-----~p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 94 CEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTH-----LPDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHh-----CCCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 44566677777775567788899 87 45554444444322 244557888788999999999999764444
Q ss_pred eec
Q 025365 85 GIG 87 (254)
Q Consensus 85 GVG 87 (254)
|+|
T Consensus 165 ~~G 167 (321)
T TIGR01306 165 GIG 167 (321)
T ss_pred CCC
Confidence 543
No 154
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=45.00 E-value=39 Score=28.23 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCCceEEEEeCCCC------HHHHHHHhhcCCcccEEeecCcc
Q 025365 54 DFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 54 g~~~vkI~~S~~ld------e~~i~~l~~~g~~id~fGVGT~l 90 (254)
+.+++-|+.++|.+ +..+..+.+.|..+-+.|||+..
T Consensus 102 ~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~ 144 (177)
T cd01469 102 DATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHF 144 (177)
T ss_pred CCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccc
Confidence 45677899999986 34567777789888899998863
No 155
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.63 E-value=82 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeCCC---ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcc
Q 025365 7 NFCAVALALNDLGYK-AVGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (254)
Q Consensus 7 nai~va~~l~~~G~~-~~gVRlDSG---Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~i 81 (254)
+.+++++.+.+.|.. +.-+=+|.. ... .-.-++++-++ .++.|+++||+. .+.+.++.+.| +
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~-~~~~i~~i~~~----------~~~pv~~~GGI~s~~d~~~~l~~G--~ 94 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET-MLDVVERVAEE----------VFIPLTVGGGIRSLEDARRLLRAG--A 94 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc-cHHHHHHHHHh----------CCCCEEEeCCCCCHHHHHHHHHcC--C
Confidence 678899999888865 333444421 111 11112222222 246699999997 67888888877 6
Q ss_pred cEEeecCccccc
Q 025365 82 DAFGIGTYLVTC 93 (254)
Q Consensus 82 d~fGVGT~l~t~ 93 (254)
+..-+|+.+..+
T Consensus 95 ~~v~ig~~~~~~ 106 (243)
T cd04731 95 DKVSINSAAVEN 106 (243)
T ss_pred ceEEECchhhhC
Confidence 777888888764
No 156
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=44.38 E-value=61 Score=29.51 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.+.+. ++ .-..+++|+..|+.+..-+.+|..+ .-+|++.||+.-..
T Consensus 184 ~v~~~Ir~~l~~~---~~-~~~~~~~IlYGGSV~~~N~~~l~~~-~~vDG~LVG~Asl~ 237 (250)
T PRK00042 184 EVHAFIRAVLAEL---YG-EVAEKVRILYGGSVKPDNAAELMAQ-PDIDGALVGGASLK 237 (250)
T ss_pred HHHHHHHHHHHHh---cc-cccCCceEEEcCCCCHHHHHHHhcC-CCCCEEEEeeeeec
Confidence 3344456666543 22 2235799999999999999999764 23999999987664
No 157
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.25 E-value=80 Score=29.48 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=23.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhhc-CCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQ-GHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~-g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++.+. | +|+..||+.+..
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~g--adgVmiGR~~l~ 229 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTG--ADALMIGRAAQG 229 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccC--CCEEEEChHhhc
Confidence 4567777777 67777777653 4 777777777765
No 158
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=44.03 E-value=75 Score=27.17 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=27.2
Q ss_pred CCceEEEEeCCCCH--------HHHHHHhhcCCcccEEeecCc
Q 025365 55 FEKMSITASNDLNE--------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 55 ~~~vkI~~S~~lde--------~~i~~l~~~g~~id~fGVGT~ 89 (254)
.+++-|++++|-+- ...+.|.++|..+-+.|||+.
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~ 150 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA 150 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc
Confidence 46788999999873 334567789999999999963
No 159
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=44.01 E-value=1.4e+02 Score=25.29 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred HHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
.++++.|+++ +..+++ |.......+++++.. +..-+ |+.+...+...+..+.+.|.|+..+|.
T Consensus 23 ~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~--------~~dgi-i~~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 23 AALYENGYQM--LLMNTNFSIEKEIEALELLARQ--------KVDGI-ILLATTITDEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHhc--------CCCEE-EEeCCCCCHHHHHHHhcCCCCEEEEec
Confidence 3455678776 455554 555444445554432 33334 666666666777888888878777753
No 160
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=43.85 E-value=18 Score=27.57 Aligned_cols=36 Identities=47% Similarity=0.726 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCc----cEEeeCCCChHHHHHH--HHHHHHHH
Q 025365 10 AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (254)
Q Consensus 10 ~va~~l~~~G~~~----~gVRlDSGDl~~ls~~--~r~~ld~~ 46 (254)
.|..||++.||.+ .|- +=||||+|.+.. ||.+....
T Consensus 23 ~Vy~AL~EKGYnPinQivGY-llSGDPaYItsh~nAR~lIr~~ 64 (79)
T PF06135_consen 23 QVYAALEEKGYNPINQIVGY-LLSGDPAYITSHNNARNLIRKI 64 (79)
T ss_pred HHHHHHHHcCCChHHHHHhh-eecCCCccccCcccHHHHHHHH
Confidence 6888999999875 233 459999998876 88877765
No 161
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=43.30 E-value=1.5e+02 Score=28.49 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHhh---cCCCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcccEE
Q 025365 10 AVALALND---LGYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 10 ~va~~l~~---~G~~~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id~f 84 (254)
++.++++. .+..+.-|-+-.|.+..++ .+++++++.....+++.+-..+.|-+. +.++.+.++.|.+.|..-.++
T Consensus 52 ~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 52 VLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred HHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEE
Confidence 44555543 2344566777778888774 558888888766666554334444433 689999999999999877788
Q ss_pred eecCc
Q 025365 85 GIGTY 89 (254)
Q Consensus 85 GVGT~ 89 (254)
||=|.
T Consensus 132 GvQS~ 136 (400)
T PRK07379 132 GVQAF 136 (400)
T ss_pred EcccC
Confidence 87654
No 162
>PTZ00413 lipoate synthase; Provisional
Probab=42.40 E-value=1e+02 Score=30.19 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCCCc---cEE-eeC--CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEe-CCC--CHHHHHHHhhcC
Q 025365 8 FCAVALALNDLGYKA---VGI-RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDL--NEETLDALNKQG 78 (254)
Q Consensus 8 ai~va~~l~~~G~~~---~gV-RlD--SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~l--de~~i~~l~~~g 78 (254)
-.++|++.+++|.+. ..+ |-| -|....++.-++++=.. .+++.|-++ +++ |++.+..|.+.|
T Consensus 182 p~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~---------~p~~~IevligDf~g~~e~l~~L~eAG 252 (398)
T PTZ00413 182 PEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKES---------NPELLLEALVGDFHGDLKSVEKLANSP 252 (398)
T ss_pred HHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHcc---------CCCCeEEEcCCccccCHHHHHHHHhcC
Confidence 357888888888763 244 533 35544444444444332 257889999 878 999999999998
Q ss_pred CcccEEee
Q 025365 79 HEVDAFGI 86 (254)
Q Consensus 79 ~~id~fGV 86 (254)
.|.|.-
T Consensus 253 --~dvynH 258 (398)
T PTZ00413 253 --LSVYAH 258 (398)
T ss_pred --CCEEec
Confidence 555543
No 163
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.14 E-value=93 Score=28.50 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCC-----------CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDS-----------GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA 73 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDS-----------GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~ 73 (254)
...+++.|+.|++.|.+ .+|.-| |-....-+.+++.. .++|++ ++|.=+|+..+..
T Consensus 40 ~~~~~~~A~~lk~~g~~--~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~----~~~Gl~-------~~te~~d~~~~~~ 106 (266)
T PRK13398 40 EEQMVKVAEKLKELGVH--MLRGGAFKPRTSPYSFQGLGEEGLKILKEVG----DKYNLP-------VVTEVMDTRDVEE 106 (266)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEeeecCCCCCCccCCcHHHHHHHHHHHH----HHcCCC-------EEEeeCChhhHHH
Confidence 45689999999999876 566652 22333333344444 445554 4455599999999
Q ss_pred HhhcCCcccEEeecCccccc
Q 025365 74 LNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 74 l~~~g~~id~fGVGT~l~t~ 93 (254)
+.+. +|.+-||+..+++
T Consensus 107 l~~~---vd~~kIga~~~~n 123 (266)
T PRK13398 107 VADY---ADMLQIGSRNMQN 123 (266)
T ss_pred HHHh---CCEEEECcccccC
Confidence 9865 7999999999985
No 164
>PF15560 Imm8: Immunity protein 8
Probab=41.69 E-value=29 Score=28.81 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHHHhHhhCCCCCCceE--EEEeCCCCHH
Q 025365 30 GDLAYLSCEARKFFRTIEKEFGVPDFEKMS--ITASNDLNEE 69 (254)
Q Consensus 30 GDl~~ls~~~r~~ld~~g~~l~~~g~~~vk--I~~S~~lde~ 69 (254)
-++..+++++|+.|.+.=.-+...|+.++| +++|||+.++
T Consensus 17 ~~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdvS~Y 58 (133)
T PF15560_consen 17 KNLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDVSSY 58 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCchhhh
Confidence 356788999999999874445566777766 5789998775
No 165
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=41.69 E-value=1.5e+02 Score=25.19 Aligned_cols=64 Identities=25% Similarity=0.248 Sum_probs=37.5
Q ss_pred HHHHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 11 VALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 11 va~~l~~~G~~~~gVRlDSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
+.+++++.|+.+. + .|++ |.......++.+... +. +.-|+++...+...+..+.+.|.|+..++
T Consensus 21 i~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~l~~~--------~v-dgiii~~~~~~~~~~~~l~~~~iPvv~~~ 85 (268)
T cd06273 21 FQETLAAHGYTLL-V-ASSGYDLDREYAQARKLLER--------GV-DGLALIGLDHSPALLDLLARRGVPYVATW 85 (268)
T ss_pred HHHHHHHCCCEEE-E-ecCCCCHHHHHHHHHHHHhc--------CC-CEEEEeCCCCCHHHHHHHHhCCCCEEEEc
Confidence 3455667787763 3 4554 554444444444433 33 33366666667787888888887765543
No 166
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.52 E-value=1.3e+02 Score=25.57 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
.++++.|+++. + .++.+.......+..++.. +--+.-|+.+...+...+..+.+.|.|+..|+
T Consensus 28 ~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 28 AVANENGYDIS-L-ATGKNEEELLEEVKKMIQQ--------KRVDGFILLYSREDDPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHCCCEEE-E-ecCCCcHHHHHHHHHHHHH--------cCcCEEEEecCcCCcHHHHHHHhcCCCEEEEC
Confidence 34556787753 2 3555555555666666654 22343366666666677888888888877765
No 167
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=41.37 E-value=2.1e+02 Score=25.69 Aligned_cols=71 Identities=14% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCC---h---HHHHHHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcC
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGD---L---AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQG 78 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGD---l---~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g 78 (254)
...++.++.+.+.|.+-. +=.+||- . ..+...++++..+. .+++.+| |-++++.++.|.+.|
T Consensus 65 eei~~~~~~~~~~g~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~~----------~i~~~~~~g~~~~e~l~~Lk~aG 133 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRF-CLVASGRGPKDREFMEYVEAMVQIVEEM----------GLKTCATLGLLDPEQAKRLKDAG 133 (296)
T ss_pred HHHHHHHHHHHHCCCCEE-EEEEecCCCChHHHHHHHHHHHHHHHhC----------CCeEEecCCCCCHHHHHHHHHcC
Confidence 345666666666675421 1234432 1 22333344443332 2445555 678999999999999
Q ss_pred CcccEEeecCc
Q 025365 79 HEVDAFGIGTY 89 (254)
Q Consensus 79 ~~id~fGVGT~ 89 (254)
++.+.+|--
T Consensus 134 --~~~v~i~~E 142 (296)
T TIGR00433 134 --LDYYNHNLD 142 (296)
T ss_pred --CCEEEEccc
Confidence 677777744
No 168
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.84 E-value=1.9e+02 Score=23.80 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC--CHHH----HHHHhhcCCcccEEeecCccc
Q 025365 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEET----LDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 33 ~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l--de~~----i~~l~~~g~~id~fGVGT~l~ 91 (254)
....+++.+.|++. |+.+++|++.|.+ -++. ..+|.+.|+ --.||=||.+-
T Consensus 66 ~~~~~~~~~~l~~~-------gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv-~~vF~pgt~~~ 122 (134)
T TIGR01501 66 EIDCKGLRQKCDEA-------GLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF-DRVFAPGTPPE 122 (134)
T ss_pred HHHHHHHHHHHHHC-------CCCCCEEEecCCcCcChhhhHHHHHHHHHcCC-CEEECcCCCHH
Confidence 34566677788876 8878878888864 3333 446888884 44899998764
No 169
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=40.71 E-value=1.5e+02 Score=28.33 Aligned_cols=70 Identities=11% Similarity=0.251 Sum_probs=52.7
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
.++.-|-+=-|+|..|+ .+..++++.....+....-..+.+-+. ++++.+.+..|.+.|....++||=|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~ 143 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSF 143 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccC
Confidence 34556666679998885 557788887777776654456666665 78999999999999988778888664
No 170
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=39.96 E-value=1e+02 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=13.7
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHH
Q 025365 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFF 43 (254)
Q Consensus 10 ~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~l 43 (254)
.++..|++.|.++..+.+=.-|...+...+.+.+
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~ 56 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS 56 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH
Confidence 3444444555444333333334333333333333
No 171
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.76 E-value=1.8e+02 Score=25.63 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
...++.++++|.+.|.+..=|-++|.+-....+++++.+ +++.|=+..=+|.+..+...+.|+
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~------------~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV------------EEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC------------CCCEEeeEeCcCHHHHHHHHHcCC
Confidence 467888888888888888888888887544444433332 344444445566666666666654
No 172
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=39.75 E-value=1.2e+02 Score=26.74 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC----ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHH-------HH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSG----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETL-------DA 73 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSG----Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i-------~~ 73 (254)
|.+|+++|.+ .|.. -|...+| .-..-...+++...++ .+| .+++|.+|||.+...+ .+
T Consensus 148 I~~a~ria~e---~GaD--~vKt~tg~~~~~t~~~~~~~~~~~~~~----~~p--~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAE---LGAD--FVKTSTGKPVGATPEDVELMRKAVEAA----PVP--GKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHH---TT-S--EEEEE-SSSSCSHHHHHHHHHHHHHTH----SST--TTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHH---hCCC--EEEecCCccccccHHHHHHHHHHHHhc----CCC--cceEEEEeCCCChHHHHHHHHHHHH
Confidence 4556666654 4654 5777777 2111233344444443 222 3688999999855544 34
Q ss_pred HhhcCCcccEE
Q 025365 74 LNKQGHEVDAF 84 (254)
Q Consensus 74 l~~~g~~id~f 84 (254)
+.+.|+...++
T Consensus 217 ~i~aGa~~~G~ 227 (236)
T PF01791_consen 217 FIEAGADRIGT 227 (236)
T ss_dssp HHHTTHSEEEE
T ss_pred HHHcCChhHHH
Confidence 44677544333
No 173
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.68 E-value=1.3e+02 Score=25.46 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=37.6
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
..++++.|+.+.-+..|+.+ .....+..++.. +..-+ |+.+.+.+...+..+.+.|.|+..|+..
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~~--------~vdgi-ii~~~~~~~~~~~~~~~~~ipvV~~~~~ 86 (266)
T cd06278 22 SRALQARGYQPLLINTDDDE--DLDAALRQLLQY--------RVDGV-IVTSGTLSSELAEECRRNGIPVVLINRY 86 (266)
T ss_pred HHHHHHCCCeEEEEcCCCCH--HHHHHHHHHHHc--------CCCEE-EEecCCCCHHHHHHHhhcCCCEEEECCc
Confidence 34456778887555555432 222233333322 33333 6666666666678888889888787654
No 174
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=39.59 E-value=45 Score=29.50 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.+++|||+ +.+.|.++.+.| +++.=||+.|-.
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G--~~gvivg~al~~ 225 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAG--IDGVIVGSALHE 225 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTT--ECEEEESHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CcEEEEehHhhC
Confidence 5679999999 899999999888 588889988854
No 175
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=39.58 E-value=1.4e+02 Score=26.70 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRT 45 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~ 45 (254)
+..|+.++++|-+.|.+..=|=+-|-+.....+.+++.+-+
T Consensus 24 ~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~ 64 (211)
T COG0800 24 VEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPE 64 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcc
Confidence 56788999999999999888899999876666666665543
No 176
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=39.21 E-value=81 Score=32.18 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC-------------CcccEEeecCc
Q 025365 32 LAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG-------------HEVDAFGIGTY 89 (254)
Q Consensus 32 l~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g-------------~~id~fGVGT~ 89 (254)
......++|+.|.++ ..++..+ ..+-++.|||||=..|..+...- .++.+|-||..
T Consensus 215 ~~~~~~~lr~~L~~AV~~rl~sd--vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~ 284 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRKRLMGD--VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC
Confidence 345566789999888 6666543 46779999999999999887531 35778888864
No 177
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=39.21 E-value=88 Score=28.79 Aligned_cols=77 Identities=31% Similarity=0.381 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHH---HHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCE---ARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~---~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
|.=++.++++ .|.++.|| +.=||..+.-- ..++.... +-..+.|.=||=-+.+.+..+...| +|+
T Consensus 165 ~~eEl~rAl~-~ga~iIGI--NnRdL~tf~vdl~~t~~la~~~-------p~~~~~IsESGI~~~~dv~~l~~~g--a~a 232 (254)
T COG0134 165 NEEELERALK-LGAKIIGI--NNRDLTTLEVDLETTEKLAPLI-------PKDVILISESGISTPEDVRRLAKAG--ADA 232 (254)
T ss_pred CHHHHHHHHh-CCCCEEEE--eCCCcchheecHHHHHHHHhhC-------CCCcEEEecCCCCCHHHHHHHHHcC--CCE
Confidence 3344555554 67777665 45555443322 34444333 2123434444545599999999888 899
Q ss_pred EeecCcccccCC
Q 025365 84 FGIGTYLVTCYA 95 (254)
Q Consensus 84 fGVGT~l~t~~~ 95 (254)
|=|||+|+.+.+
T Consensus 233 ~LVG~slM~~~~ 244 (254)
T COG0134 233 FLVGEALMRADD 244 (254)
T ss_pred EEecHHHhcCCC
Confidence 999999998654
No 178
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=38.98 E-value=86 Score=30.51 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC---CcccEEeecCc
Q 025365 32 LAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG---HEVDAFGIGTY 89 (254)
Q Consensus 32 l~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g---~~id~fGVGT~ 89 (254)
......++++.|+++ ..++.. -..+-++.|||+|=..|..+..+- .++..|.||..
T Consensus 231 ~~~~~e~l~~~l~~aV~~r~~~--~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~ 290 (467)
T TIGR01536 231 EEDLVDELRSLLEDAVKRRLVA--DVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFE 290 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecC
Confidence 345667788888887 544432 245779999999999999887642 25788888764
No 179
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=38.97 E-value=1e+02 Score=29.49 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChH--H-HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcc
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLA--Y-LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~--~-ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~i 81 (254)
-|+++.++|++.|... -|=.=|||.. . --+++.++||+.=++++. +.+ |++|||-+-+.+--+.+.-.|+
T Consensus 52 ~avkiydeL~~~Gedv-eVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~---~~~-i~VsDGaeDE~vlPiIqSr~~V 124 (344)
T PF04123_consen 52 GAVKIYDELKAEGEDV-EVAVVSGSPDVGVEADRKIAEQLDEVLSKFDP---DSA-IVVSDGAEDERVLPIIQSRVPV 124 (344)
T ss_pred HHHHHHHHHHhcCCCe-EEEEEECCCCCchhhHHHHHHHHHHHHHhCCC---CEE-EEEecChhhhhhhHhhhccCce
Confidence 4788999999888765 3334455442 1 223467777776444433 345 9999998877777776654444
No 180
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=38.94 E-value=1.7e+02 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=35.3
Q ss_pred HHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
+++++.|+.+. -.+++ |.......++.++.. +..-+ |+.+.+.+...+..+.++|.|+..|+-
T Consensus 23 ~~a~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~--------~~dgi-ii~~~~~~~~~l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 23 DVCRAHGYQVL--VCNSDNDPEKEKEYLESLLAY--------QVDGL-IVNPTGNNKELYQRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHc--------CcCEE-EEeCCCCChHHHHHHhcCCCCEEEEcC
Confidence 33456677663 23443 543333323332322 33334 666667777678888888888777753
No 181
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=38.81 E-value=1.5e+02 Score=25.77 Aligned_cols=36 Identities=6% Similarity=0.145 Sum_probs=25.9
Q ss_pred eEEEEeCCCCH-------HHHHHHhhcCCcccEEeecCcccccCC
Q 025365 58 MSITASNDLNE-------ETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 58 vkI~~S~~lde-------~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
+.|+++||++. +.+.++.+.| ++++-+|+++.++.+
T Consensus 180 ~pvv~~GG~~~~~~~~~l~~~~~~~~~G--a~gv~vg~~i~~~~d 222 (235)
T cd00958 180 VPVVIAGGPKKDSEEEFLKMVYDAMEAG--AAGVAVGRNIFQRPD 222 (235)
T ss_pred CCEEEeCCCCCCCHHHHHHHHHHHHHcC--CcEEEechhhhcCCC
Confidence 44788888643 4577778888 558888998887553
No 182
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=38.62 E-value=57 Score=28.15 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCCceEEEEeCC------CCH-HHHHHHhhcCCcccEEeecCc
Q 025365 54 DFEKMSITASND------LNE-ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 54 g~~~vkI~~S~~------lde-~~i~~l~~~g~~id~fGVGT~ 89 (254)
+.+++-|+.++| -|. ....+|.++|..+-+.|||+.
T Consensus 130 ~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 130 NYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred CCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 456776888754 233 345667788999999999985
No 183
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.62 E-value=88 Score=29.94 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=24.2
Q ss_pred ceEEEEeCCC-------------------CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-------------------NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-------------------de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+++|+++|++ +.+.+.++++.|. .|..++|..++.
T Consensus 280 ~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~-~D~V~~gR~~ia 333 (361)
T cd04747 280 GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGE-FDLVAVGRALLS 333 (361)
T ss_pred CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCC-CCeehhhHHHHh
Confidence 3567777776 6667777776553 677777777766
No 184
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=38.57 E-value=1.2e+02 Score=26.92 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeC----CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCc
Q 025365 7 NFCAVALALNDLGYK-AVGIRLD----SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHE 80 (254)
Q Consensus 7 nai~va~~l~~~G~~-~~gVRlD----SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~ 80 (254)
+.+++|+.+.+.|.+ +.-|=+| .++...+.+ ++-++ ..+.|.+.||+ +.+.++++...|
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~---~i~~~----------~~~pv~vgGGirs~edv~~~l~~G-- 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLA---EVVGK----------LDVKVELSGGIRDDESLEAALATG-- 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHH---HHHHH----------cCCCEEEcCCCCCHHHHHHHHHCC--
Confidence 677888888888865 3344444 233322222 22222 23568889888 578889999888
Q ss_pred ccEEeecCccccc
Q 025365 81 VDAFGIGTYLVTC 93 (254)
Q Consensus 81 id~fGVGT~l~t~ 93 (254)
++..++||.+.++
T Consensus 98 a~kvviGs~~l~~ 110 (241)
T PRK14024 98 CARVNIGTAALEN 110 (241)
T ss_pred CCEEEECchHhCC
Confidence 5577999999884
No 185
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=38.23 E-value=1.9e+02 Score=27.87 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=29.9
Q ss_pred eEEEEeC-CCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 58 MSITASN-DLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 58 vkI~~S~-~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+.++++| --+.+.+.++++.| -+|.-|+|..++...
T Consensus 289 ~pvi~~G~i~~~~~Ae~~l~~g-~aDlVa~gR~~ladP 325 (363)
T COG1902 289 IPVIAVGGINDPEQAEEILASG-RADLVAMGRPFLADP 325 (363)
T ss_pred CCEEEeCCCCCHHHHHHHHHcC-CCCEEEechhhhcCc
Confidence 5677777 47889999999998 799999999998743
No 186
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=38.08 E-value=1.8e+02 Score=27.00 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHH--------HHHHHHHHHhHhhCCCCCCceEE--EEeCCCCHHHHHHHhh
Q 025365 10 AVALALNDLGYKAVGIRLDSGDLAYLSC--------EARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALNK 76 (254)
Q Consensus 10 ~va~~l~~~G~~~~gVRlDSGDl~~ls~--------~~r~~ld~~g~~l~~~g~~~vkI--~~S~~lde~~i~~l~~ 76 (254)
+.+.+|.+.|.....|-+||.|...+.+ ++.+-++.+. -.|+..++| ++.-+.|.+.|.++.+
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~----~~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAK----AAGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHH----HcCCCceEEEEEEECCCCHHHHHHHHH
Confidence 4677788889887899999988644321 2333333321 126655554 4556788888888776
No 187
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.07 E-value=1.9e+02 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGD 31 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGD 31 (254)
...|+.++++|.+.|.+..=|-+.|-+
T Consensus 26 ~~~a~~i~~al~~~Gi~~iEitl~~~~ 52 (212)
T PRK05718 26 LEDAVPLAKALVAGGLPVLEVTLRTPA 52 (212)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 345666666666666665555565555
No 188
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=37.92 E-value=85 Score=27.97 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.7
Q ss_pred CceEEEEeCCCC-----------HHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLN-----------EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~ld-----------e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++++++.. +.+ .+-+..|.++|+++|++|+=.++..
T Consensus 117 P~a~l~~N-dy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 117 PDAKLFYN-DYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred CCCEEEEe-ccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecC
Confidence 67888875 333 4556778889999999999767653
No 189
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=37.46 E-value=65 Score=30.98 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=48.6
Q ss_pred CccEEeeCCCChHHHHHH-HHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 21 KAVGIRLDSGDLAYLSCE-ARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~-~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
++.-|-+=-|.|..|+.. ..++++.+...++++....+.|-+. +.++++.++.|.+.|..-.++||=|.
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~ 132 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSL 132 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcC
Confidence 344555556899777655 5567777765566655555655554 56999999999999987778887654
No 190
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=37.42 E-value=11 Score=29.96 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.2
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcc
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l 90 (254)
.|||+.|.=-++.|.+|...=......||-|++
T Consensus 52 AKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN~ 84 (107)
T smart00878 52 AKLIVHGETREEAIARLRRALDEFRIEGVKTNI 84 (107)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHhCEEECccCCH
Confidence 688999888888999988754445567777776
No 191
>PLN02591 tryptophan synthase
Probab=36.87 E-value=41 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=31.3
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+++.|++.-|+. .+.++++.+.| .|+.-|||.++.
T Consensus 188 ~~~Pv~vGFGI~~~e~v~~~~~~G--ADGvIVGSalVk 223 (250)
T PLN02591 188 TDKPVAVGFGISKPEHAKQIAGWG--ADGVIVGSAMVK 223 (250)
T ss_pred CCCceEEeCCCCCHHHHHHHHhcC--CCEEEECHHHHH
Confidence 677899999998 99999999888 899999999976
No 192
>PLN02561 triosephosphate isomerase
Probab=36.41 E-value=95 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccc
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~ 91 (254)
.+++|+..|+.+..-+.++..+ .-+|++.||+.=.
T Consensus 203 ~~i~ILYGGSV~~~N~~~l~~~-~~iDG~LVG~ASL 237 (253)
T PLN02561 203 ATTRIIYGGSVTGANCKELAAQ-PDVDGFLVGGASL 237 (253)
T ss_pred ccceEEEeCCcCHHHHHHHhcC-CCCCeEEEehHhh
Confidence 5799999999999999999764 2399999997643
No 193
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=36.38 E-value=1.6e+02 Score=26.97 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=28.7
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.||++||+ +...+.+....| .|+.+|||.+..
T Consensus 227 ~ipvia~GGI~~~~d~~kal~lG--Ad~V~ig~~~l~ 261 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALALG--ADAVLIGRPFLY 261 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHHHH
Confidence 5789999999 677787777788 899999997765
No 194
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.27 E-value=1.5e+02 Score=26.38 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccE
Q 025365 7 NFCAVALALNDLGYK-AVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (254)
Q Consensus 7 nai~va~~l~~~G~~-~~gVRlD-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~ 83 (254)
+.+++|+.+.+.|.. +.-+=+| ++.-...-..+.+.+.+. .++.|+++||+. .+.+.++...| .+.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---------~~ipv~~~GGi~s~~~~~~~l~~G--a~~ 99 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ---------VFIPLTVGGGIRSVEDARRLLRAG--ADK 99 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh---------CCCCEEeeCCCCCHHHHHHHHHcC--CCE
Confidence 567788888777754 3333333 121111112222222222 246799999997 88899988877 667
Q ss_pred EeecCccccc
Q 025365 84 FGIGTYLVTC 93 (254)
Q Consensus 84 fGVGT~l~t~ 93 (254)
.-+||.+..+
T Consensus 100 Viigt~~l~~ 109 (253)
T PRK02083 100 VSINSAAVAN 109 (253)
T ss_pred EEEChhHhhC
Confidence 7888888764
No 195
>PRK14565 triosephosphate isomerase; Provisional
Probab=36.20 E-value=91 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.0
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+++|+..|+++..-+.+|.++ ..+|++.||..-..
T Consensus 188 ~~~~IlYGGSV~~~N~~~l~~~-~~iDG~LvG~asl~ 223 (237)
T PRK14565 188 SKSHIIYGGSVNQENIRDLKSI-NQLSGVLVGSASLD 223 (237)
T ss_pred CCceEEEcCccCHhhHHHHhcC-CCCCEEEEechhhc
Confidence 5789999999999999999874 23999999988764
No 196
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.10 E-value=1.3e+02 Score=27.13 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeC-----CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCC
Q 025365 7 NFCAVALALNDLGYK-AVGIRLD-----SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGH 79 (254)
Q Consensus 7 nai~va~~l~~~G~~-~~gVRlD-----SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~ 79 (254)
+.+++|+.+.+.|.+ +.-+=+| +|....+.+++. ++ ..+.|+++||+ +.+.+.++...|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~---~~----------~~~pv~~gGGi~s~~d~~~l~~~G- 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLA---SE----------CFMPLCYGGGIKTLEQAKKIFSLG- 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHH---Hh----------CCCCEEECCCCCCHHHHHHHHHCC-
Confidence 778889998888854 3333333 344333333322 22 34669999999 888899988877
Q ss_pred cccEEeecCccccc
Q 025365 80 EVDAFGIGTYLVTC 93 (254)
Q Consensus 80 ~id~fGVGT~l~t~ 93 (254)
++..=|||.+...
T Consensus 97 -~~~vvigs~~~~~ 109 (258)
T PRK01033 97 -VEKVSINTAALED 109 (258)
T ss_pred -CCEEEEChHHhcC
Confidence 5566678887663
No 197
>PLN02411 12-oxophytodienoate reductase
Probab=36.03 E-value=1.9e+02 Score=27.85 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.7
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEEcCcccccc
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKL 116 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~ 116 (254)
+.++++|+++.+...++.++|. .|..++|-.++... +++-|+. +|+|..+.
T Consensus 314 ~pvi~~G~i~~~~a~~~l~~g~-aDlV~~gR~~iadP-----dl~~k~~--~g~~l~~~ 364 (391)
T PLN02411 314 GTFMCSGGFTRELGMQAVQQGD-ADLVSYGRLFISNP-----DLVLRFK--LNAPLNKY 364 (391)
T ss_pred CCEEEECCCCHHHHHHHHHcCC-CCEEEECHHHHhCc-----cHHHHHh--cCCCCCCC
Confidence 4599999999999999988775 89999999998843 5555643 36665443
No 198
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=35.95 E-value=1.2e+02 Score=28.55 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=23.9
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++.|+++||+ +.+.+.++.+ + +|+..||..+..
T Consensus 204 ~~iPVI~nGgI~s~eda~~~l~-~--aDgVmIGRa~l~ 238 (333)
T PRK11815 204 PHLTIEINGGIKTLEEAKEHLQ-H--VDGVMIGRAAYH 238 (333)
T ss_pred CCCeEEEECCcCCHHHHHHHHh-c--CCEEEEcHHHHh
Confidence 35677888777 6666777665 3 777777777766
No 199
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=35.92 E-value=1.4e+02 Score=27.47 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcCCC-ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 6 PNFCAVALALNDLGYK-AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 6 ~nai~va~~l~~~G~~-~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
.+.+++|+...+.|.+ +.-|=||-|+... ..-++++.. . .++|-+.||+..+.++++.+.| ++-.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n-~~~i~~i~~-~----------~~~vqvGGGIR~e~i~~~l~~G--a~rV 108 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASL-AAALEALRA-Y----------PGGLQVGGGVNSENAMSYLDAG--ASHV 108 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCccc-HHHHHHHHh-C----------CCCEEEeCCccHHHHHHHHHcC--CCEE
Confidence 4678899999888876 5688888866533 111222221 2 2679999999999999999999 5556
Q ss_pred eecCccccc
Q 025365 85 GIGTYLVTC 93 (254)
Q Consensus 85 GVGT~l~t~ 93 (254)
=|||..++.
T Consensus 109 iigT~Av~~ 117 (262)
T PLN02446 109 IVTSYVFRD 117 (262)
T ss_pred EEchHHHhC
Confidence 689998884
No 200
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=35.75 E-value=1.2e+02 Score=30.93 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhc--CCcccEEeecC
Q 025365 33 AYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGT 88 (254)
Q Consensus 33 ~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~--g~~id~fGVGT 88 (254)
.....++++.|+++ ..++..+ ..|-++.|||||=..|..+..+ +.++..|-||.
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd--~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf 295 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVAD--VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGF 295 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEe
Confidence 33455688888887 6666443 5677999999999999988653 23578887775
No 201
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=35.70 E-value=1.7e+02 Score=25.13 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=34.9
Q ss_pred HHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.- .++ +|.......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 24 ~a~~~g~~~~~--~~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 24 AAEKRGFDLKF--ADAQQKQENQISAIRSFIAQ--------GVDVI-ILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred HHHhcCCEEEE--eCCCCCHHHHHHHHHHHHHc--------CCCEE-EEcCCccccchHHHHHHHHCCCCEEEEe
Confidence 34567887643 344 3655444445554443 33233 66555555 456788888887776655
No 202
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=35.35 E-value=55 Score=29.85 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=43.9
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHH--hHhhCCCCCCceEEEEeCCCCHHHHHHHhhc
Q 025365 23 VGIRLDSGDLAYLSCEARKFFRTI--EKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (254)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~--g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~ 77 (254)
.=||+-.||+.|-..+..-|+++. ..++|++|.--=-+-.-|.||...+++|.+.
T Consensus 56 ~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~a 112 (241)
T COG3142 56 VMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEA 112 (241)
T ss_pred EEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHH
Confidence 369999999999999998888887 4577777753222556789999999999874
No 203
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=35.09 E-value=1.2e+02 Score=25.75 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=25.5
Q ss_pred CCCCceEEEEeCCCCH------HHHHHHhhc-----CCcccEEeecCc
Q 025365 53 PDFEKMSITASNDLNE------ETLDALNKQ-----GHEVDAFGIGTY 89 (254)
Q Consensus 53 ~g~~~vkI~~S~~lde------~~i~~l~~~-----g~~id~fGVGT~ 89 (254)
++-...-|++|+|.+. ..+.++.+. +..+..+|+|+.
T Consensus 132 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igiG~~ 179 (206)
T cd01456 132 PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVIDFGGD 179 (206)
T ss_pred CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEEEecCc
Confidence 3443555999999864 345555543 778999999985
No 204
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=35.06 E-value=1.3e+02 Score=24.85 Aligned_cols=35 Identities=6% Similarity=0.132 Sum_probs=23.3
Q ss_pred CCceEEEEeCCCCHHH-------HHHHhhcCCcccEEeecCc
Q 025365 55 FEKMSITASNDLNEET-------LDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 55 ~~~vkI~~S~~lde~~-------i~~l~~~g~~id~fGVGT~ 89 (254)
...+-|+.|+|.+... ++++.+.+..+-+||||+.
T Consensus 107 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~ 148 (176)
T cd01464 107 WRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPK 148 (176)
T ss_pred cCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccc
Confidence 3456699999987432 2333334578999999984
No 205
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=34.78 E-value=1.8e+02 Score=27.10 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .++.+|||.+..
T Consensus 239 ~ipIig~GGI~s~~Da~e~l~aG--A~~V~v~t~~~~ 273 (334)
T PRK07565 239 GADLAATTGVHDAEDVIKMLLAG--ADVVMIASALLR 273 (334)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeeehHHhh
Confidence 5668999887 566677777788 778888888876
No 206
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=34.48 E-value=48 Score=26.37 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSG 30 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSG 30 (254)
++.|.++.+.|.+.|.+-.-|||+||
T Consensus 22 ~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 22 VECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHHHHHHCCCCceEEEEEec
Confidence 57788999999999999999999997
No 207
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=34.29 E-value=62 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=27.6
Q ss_pred CceEEEEeCCCCHH-------------H---HHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLNEE-------------T---LDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~lde~-------------~---i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++-|++|+|.+.. . ++++.+.|..+-+.|||+...+
T Consensus 104 ~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~ 156 (174)
T cd01454 104 RKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATT 156 (174)
T ss_pred CcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcccc
Confidence 55669999998742 2 5666678888888999988754
No 208
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=34.19 E-value=1.5e+02 Score=28.61 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=26.6
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++.|+.+||+. .+.+.++...| .|+..|||.+.-
T Consensus 252 ~~ipIig~GGI~s~~da~e~i~aG--A~~Vqi~ta~~~ 287 (420)
T PRK08318 252 RGLPISGIGGIETWRDAAEFILLG--AGTVQVCTAAMQ 287 (420)
T ss_pred CCCCEEeecCcCCHHHHHHHHHhC--CChheeeeeecc
Confidence 367899999975 56666666688 677888888775
No 209
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=34.13 E-value=95 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l 66 (254)
|+..++..|++.|..+....+=--|...+...+++.+++ .++ |+.+||+
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----------~D~-VittGG~ 66 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR----------ADL-VITTGGT 66 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT----------TSE-EEEESSS
T ss_pred HHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc----------CCE-EEEcCCc
Confidence 566667777777776543333333666666666666665 266 7777765
No 210
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.99 E-value=84 Score=30.26 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCCCccEE--ee-C------CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhh
Q 025365 6 PNFCAVALALNDLGYKAVGI--RL-D------SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK 76 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gV--Rl-D------SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~ 76 (254)
+++.+.++.+.+.|..+.-| |. | +||... +.+.+++. ++.||+.|-.+.+...++.+
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~----i~~~ik~~----------~ipVIaG~V~t~e~A~~l~~ 206 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLN----LKEFIYEL----------DVPVIVGGCVTYTTALHLMR 206 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHH----HHHHHHHC----------CCCEEEeCCCCHHHHHHHHH
Confidence 35777777777777765555 21 2 235433 33344432 35688888889999999999
Q ss_pred cCCcccEEeecC
Q 025365 77 QGHEVDAFGIGT 88 (254)
Q Consensus 77 ~g~~id~fGVGT 88 (254)
.|+.....|+|.
T Consensus 207 aGAD~V~VG~G~ 218 (368)
T PRK08649 207 TGAAGVLVGIGP 218 (368)
T ss_pred cCCCEEEECCCC
Confidence 998755566664
No 211
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=33.93 E-value=31 Score=32.40 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.6
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.++.|++|||+ +...+.+....| .|+.|||+.+...
T Consensus 253 ~~ipVIasGGI~~~~di~kaLalG--Ad~V~igr~~L~~ 289 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIALG--ADAVGMARPFLKA 289 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHHhC--CCeehhhHHHHHH
Confidence 35789999999 899999999899 8999999998763
No 212
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.91 E-value=1.2e+02 Score=26.31 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=27.5
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||+. .+.+.++.+.| +|++-||+.+...
T Consensus 190 ~ipvi~~GGi~~~~di~~~~~~G--a~gv~vg~~~~~~ 225 (234)
T cd04732 190 GIPVIASGGVSSLDDIKALKELG--VAGVIVGKALYEG 225 (234)
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CCEEEEeHHHHcC
Confidence 56789999887 45588887776 8888899988764
No 213
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=33.77 E-value=1.3e+02 Score=26.49 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
...|+.++++|.+.|.+..=|-+.|.+-....+++++.+ +++.|=+..=+|.+.++...+.|+
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~------------p~~~vGAGTV~~~e~a~~a~~aGA 81 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF------------PDLLVGAGTVLTAEQAEAAIAAGA 81 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH------------TTSEEEEES--SHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC------------CCCeeEEEeccCHHHHHHHHHcCC
Confidence 457889999999999999899999988544443333332 445555555667777777766665
No 214
>PRK05473 hypothetical protein; Provisional
Probab=33.73 E-value=25 Score=27.19 Aligned_cols=36 Identities=44% Similarity=0.665 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCc----cEEeeCCCChHHHHHH--HHHHHHHH
Q 025365 10 AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (254)
Q Consensus 10 ~va~~l~~~G~~~----~gVRlDSGDl~~ls~~--~r~~ld~~ 46 (254)
.|-.||.++||.+ .|- +=||||+|.... ||.+....
T Consensus 26 ~Vy~AL~EKGYNPinQiVGY-llSGDPaYItsh~nAR~lIrki 67 (86)
T PRK05473 26 TVYDALEEKGYNPINQIVGY-LLSGDPAYIPRHNDARNLIRKL 67 (86)
T ss_pred HHHHHHHHcCCChHHHHHhh-hccCCCCccCCcccHHHHHHHH
Confidence 5778899999875 232 459999998876 88877765
No 215
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=33.73 E-value=1.7e+02 Score=25.87 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEe
Q 025365 8 FCAVALALNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 8 ai~va~~l~~~G~~~~gVRlD-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fG 85 (254)
+.+.|.+.+..|.++.-+ -| ||-....+.+..+.+.+. .++.+++.||+ +.+.++++.+.| .|.+=
T Consensus 136 ~~~~a~aa~~~G~~~i~L-e~~sGa~~~v~~e~i~~Vk~~---------~~~Pv~vGGGIrs~e~a~~l~~~G--AD~VV 203 (205)
T TIGR01769 136 AAAYCLAAKYFGMKWVYL-EAGSGASYPVNPETISLVKKA---------SGIPLIVGGGIRSPEIAYEIVLAG--ADAIV 203 (205)
T ss_pred HHHHHHHHHHcCCCEEEE-EcCCCCCCCCCHHHHHHHHHh---------hCCCEEEeCCCCCHHHHHHHHHcC--CCEEE
Confidence 344455555567665433 23 444322233333333332 24579999999 888899988888 45544
Q ss_pred ec
Q 025365 86 IG 87 (254)
Q Consensus 86 VG 87 (254)
||
T Consensus 204 VG 205 (205)
T TIGR01769 204 TG 205 (205)
T ss_pred eC
Confidence 44
No 216
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=33.47 E-value=1.3e+02 Score=30.65 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhc--CCcccEEeecCc
Q 025365 31 DLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGTY 89 (254)
Q Consensus 31 Dl~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~--g~~id~fGVGT~ 89 (254)
+..+...++++.|.++ ..++..+ ..+-++.|||||=..|..+... +.++.+|-+|..
T Consensus 235 ~~~e~~e~l~~~l~~aV~~rl~~d--~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~ 294 (628)
T TIGR03108 235 SEADALAELIERLREAVRSRMVAD--VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFD 294 (628)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC--CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecC
Confidence 4455667788889888 5555433 3567899999999999887652 346888888753
No 217
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=33.40 E-value=47 Score=29.78 Aligned_cols=37 Identities=5% Similarity=0.133 Sum_probs=29.1
Q ss_pred ceEEEEeCCCC-------HHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 57 KMSITASNDLN-------EETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 57 ~vkI~~S~~ld-------e~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
.++|+++||++ .+.+.++.+.|+ +++-+|..+.+..+
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa--~Gia~g~~i~~~~d 235 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGA--AGVAVGRNIFQHDD 235 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCC--cEEehhhHhhcCCC
Confidence 47789999998 677888888884 48888888887543
No 218
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.36 E-value=1.8e+02 Score=25.45 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=36.9
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC--CHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l--de~~i~~l~~~g~~id~fG 85 (254)
+++++.|+.+.-+-...++.......+..++.. +..-+ |+++.+. +...+..+.+.|.|+..|+
T Consensus 23 ~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~dgi-ii~~~~~~~~~~~i~~~~~~~iPvV~~~ 88 (294)
T cd06316 23 DEFAKLGIEVVATTDAQFDPAKQVADIETTISQ--------KPDII-ISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred HHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHh--------CCCEE-EEcCCCchhhhHHHHHHHHcCCcEEEec
Confidence 445667877632222335665555555555543 33223 6655543 3566788888888877665
No 219
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.34 E-value=2.1e+02 Score=24.40 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=36.4
Q ss_pred HHHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC--CCHHHHHHHhhcCCcccEEee
Q 025365 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~--lde~~i~~l~~~g~~id~fGV 86 (254)
..++++.|+.+.- .|| +|+......++.++.. ++ +.-|+.+.+ .....+.++.+.|.|+..++.
T Consensus 22 ~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~--------~v-dgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 22 KAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQ--------KV-DAIIIQHGRAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred HHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHc--------CC-CEEEEecCChhhhHHHHHHHHHcCCCEEEecC
Confidence 3445677887633 445 5765555555555543 33 332555443 234567788888888666643
No 220
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=33.28 E-value=55 Score=37.15 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=41.2
Q ss_pred ChHHH-HHHHHHHHHHHhHhhCCCCCC-ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEE
Q 025365 31 DLAYL-SCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (254)
Q Consensus 31 Dl~~l-s~~~r~~ld~~g~~l~~~g~~-~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vy 103 (254)
=|..+ ..++.+.|.+. |+. +|++++||+| +...+......| .|.||+||.... ++||++
T Consensus 1046 lP~e~gL~~~~~~L~~~-------glR~rv~l~a~Ggl~t~~Dv~kA~aLG--Ad~~~~gt~~li-----alGCi~ 1107 (1485)
T PRK11750 1046 SPWELGLAETHQALVAN-------GLRHKIRLQVDGGLKTGLDVIKAAILG--AESFGFGTGPMV-----ALGCKY 1107 (1485)
T ss_pred ccHHHHHHHHHHHHHhc-------CCCcceEEEEcCCcCCHHHHHHHHHcC--CcccccchHHHH-----HcCCHH
Confidence 33344 33577888886 775 4999999998 344455555567 789999998877 467764
No 221
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=33.01 E-value=1.7e+02 Score=25.40 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.8
Q ss_pred ceEEEEeCC--CCHHH----HHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASND--LNEET----LDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~--lde~~----i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+-||++++ -|+.. +.+|.++|..++..|+|+.--+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~ 150 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDN 150 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCC
Confidence 433444444 35444 4677778999999999998433
No 222
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=32.91 E-value=2.7e+02 Score=23.55 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=35.5
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+ ....|.......++.+++. +. +.-|+.+...++..+..+...|.|+..++
T Consensus 24 ~~~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~--------~v-dgiii~~~~~~~~~~~~l~~~~ipvV~~~ 85 (268)
T cd06298 24 IATMYKYNIILS-NSDNDKEKELKVLNNLLAK--------QV-DGIIFMGGKISEEHREEFKRSPTPVVLAG 85 (268)
T ss_pred HHHHcCCeEEEE-eCCCCHHHHHHHHHHHHHh--------cC-CEEEEeCCCCcHHHHHHHhcCCCCEEEEc
Confidence 345668876444 3333554444444444432 33 33366666677777788877787776664
No 223
>PRK01215 competence damage-inducible protein A; Provisional
Probab=32.77 E-value=1.2e+02 Score=27.63 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE 68 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde 68 (254)
|+-.++..|.+.|.++..+-+=.-|...+...+++.++. .++ ||.|||+-.
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~----------~Dl-VIttGG~g~ 74 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDR----------ADV-VVSTGGLGP 74 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcC----------CCE-EEEeCCCcC
Confidence 556677788888988766555555655555555555443 366 888888754
No 224
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.69 E-value=63 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.5
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++.|++..|+ +.+.+.++.+. .|+.-|||.++...
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~---ADGviVGSaiv~~~ 235 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV---ADGVIVGSALVKII 235 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh---CCEEEEcHHHHHHH
Confidence 46789999999 88999998853 79999999998754
No 225
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=32.62 E-value=1.4e+02 Score=23.85 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=21.5
Q ss_pred ceEEEEeCCCC------HHHHHHH----hhcCCcccEEeecC
Q 025365 57 KMSITASNDLN------EETLDAL----NKQGHEVDAFGIGT 88 (254)
Q Consensus 57 ~vkI~~S~~ld------e~~i~~l----~~~g~~id~fGVGT 88 (254)
..-|++|+|.+ .+.+.++ .+.+..+..+|+|.
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~ 139 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD 139 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 33489999985 3444333 34678899999994
No 226
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=32.46 E-value=1.5e+02 Score=28.43 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 55 FEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 55 ~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
..+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 211 ~~~v~ILYGGSV~~~N~~~l~~~-~~iDG~LVG~asl~ 247 (355)
T PRK14905 211 SKKIPVLYGGSVNLENANELIMK-PHIDGLFIGRSAWD 247 (355)
T ss_pred cCceeEEEeCcCCHHHHHHHhcC-CCCCEEEechhhcc
Confidence 35799999999999999999864 34999999998775
No 227
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.32 E-value=3.2e+02 Score=26.84 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=33.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.||+.||+ +...|.+-+..| .++-.||+.++.+...|.
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalG--A~aVmvGs~~agt~Espg 296 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLFAGTKESPS 296 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcceeeeeecCCC
Confidence 4679999999 788888888888 678889999998776653
No 228
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.60 E-value=2.2e+02 Score=24.45 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=35.9
Q ss_pred HHHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
..++++.|+.+. ..++ +|.......++.+... +..-+ |+.+.+.+ ...+..+.+.|.|+..|+
T Consensus 22 ~~~~~~~g~~v~--~~~~~~~~~~~~~~i~~~~~~--------~~Dgi-ii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 22 KAHAKALGYELI--STDAQGDLTKQIADVEDLLTR--------GVNVL-IINPVDPEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHc--------CCCEE-EEecCCccchHHHHHHHHHCCCCEEEec
Confidence 344566787763 3455 4665554444444433 33323 55554444 356788888888887775
No 229
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=31.54 E-value=1.1e+02 Score=29.28 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhcCCCccEEee------CC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhc
Q 025365 5 VPNFCAVALALNDLGYKAVGIRL------DS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRl------DS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~ 77 (254)
-..++++|+++++.|.++ +|- -| ....-+..+--++|.++..++|++-++.+ +|+..+..+.+.
T Consensus 106 ~e~~~~~A~~lk~~ga~~--~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev-------~d~~~~~~l~~~ 176 (335)
T PRK08673 106 EEQILEIARAVKEAGAQI--LRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEV-------MDPRDVELVAEY 176 (335)
T ss_pred HHHHHHHHHHHHHhchhh--ccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEee-------CCHHHHHHHHHh
Confidence 356889999998887653 332 01 11122235556678887777777655555 999999999865
Q ss_pred CCcccEEeecCccccc
Q 025365 78 GHEVDAFGIGTYLVTC 93 (254)
Q Consensus 78 g~~id~fGVGT~l~t~ 93 (254)
+|.+=||++.+++
T Consensus 177 ---vd~lqIgAr~~~N 189 (335)
T PRK08673 177 ---VDILQIGARNMQN 189 (335)
T ss_pred ---CCeEEECcccccC
Confidence 8999999999985
No 230
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.37 E-value=1.9e+02 Score=25.27 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCCh---HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcc
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDL---AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl---~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~i 81 (254)
.+.+++++++.+.|.+..-+|-=++.. ......++++.++ ..+.+++.||++ .+.+..+.+.|+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~----------~~~~l~v~GGi~~~~~~~~~~~~Ga-- 99 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA----------VGVPVQLGGGIRSAEDAASLLDLGV-- 99 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH----------cCCcEEEcCCcCCHHHHHHHHHcCC--
Confidence 367788888888887766777444322 2334455555544 246788899988 566777778884
Q ss_pred cEEeecCcccc
Q 025365 82 DAFGIGTYLVT 92 (254)
Q Consensus 82 d~fGVGT~l~t 92 (254)
|..=+||.+..
T Consensus 100 ~~v~iGs~~~~ 110 (241)
T PRK13585 100 DRVILGTAAVE 110 (241)
T ss_pred CEEEEChHHhh
Confidence 44557887765
No 231
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=31.18 E-value=46 Score=33.42 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=44.2
Q ss_pred CChHHHHH-HHHHHHHHHhHhhCCCCCC-ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEe
Q 025365 30 GDLAYLSC-EARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLV 106 (254)
Q Consensus 30 GDl~~ls~-~~r~~ld~~g~~l~~~g~~-~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv 106 (254)
|-|..+.. ++-+.|.+. |+. +++|.+||+| +...+......| .|.||+||.-.- +++|+|.-+
T Consensus 352 GiP~e~glae~~q~L~~~-------glRd~v~l~~~Ggl~Tg~DVaka~aLG--Ad~v~~gTa~li-----a~GCim~r~ 417 (485)
T COG0069 352 GIPWELGLAETHQTLVLN-------GLRDKVKLIADGGLRTGADVAKAAALG--ADAVGFGTAALV-----ALGCIMCRV 417 (485)
T ss_pred CchHHHHHHHHHHHHHHc-------CCcceeEEEecCCccCHHHHHHHHHhC--cchhhhchHHHH-----HhhhHhhhh
Confidence 34443333 255556554 664 5999999998 466677666678 789999998766 578877655
Q ss_pred EE
Q 025365 107 EI 108 (254)
Q Consensus 107 ~~ 108 (254)
+-
T Consensus 418 CH 419 (485)
T COG0069 418 CH 419 (485)
T ss_pred cc
Confidence 54
No 232
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=31.09 E-value=2.5e+02 Score=26.90 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC---HHHHH-HHhhcCCccc
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN---EETLD-ALNKQGHEVD 82 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld---e~~i~-~l~~~g~~id 82 (254)
|...++..|++.|+....+.+=.-|...+...+++.+++ .++ |+.|||.. .+-+. .+.+.|..+.
T Consensus 196 n~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~----------~Dl-iittGG~s~g~~D~~~~al~~~g~~~~ 264 (394)
T cd00887 196 NSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE----------ADV-VITSGGVSVGDYDFVKEVLEELGGEVL 264 (394)
T ss_pred hHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhC----------CCE-EEEeCCCCCCcchhHHHHHHhCCCeEE
Confidence 566667778888888766666666766666666666544 467 88889885 23333 3344566777
Q ss_pred EEeec
Q 025365 83 AFGIG 87 (254)
Q Consensus 83 ~fGVG 87 (254)
.+||.
T Consensus 265 f~gv~ 269 (394)
T cd00887 265 FHGVA 269 (394)
T ss_pred EEEEE
Confidence 77775
No 233
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=31.08 E-value=2.7e+02 Score=23.54 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
++++.|+.+.-+.. ..|.......++.++.. ++.-+ |+.+..-+...+.++.++|.|+..++-
T Consensus 24 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~--------~vdgi-Ii~~~~~~~~~~~~l~~~~ipvV~~~~ 86 (265)
T cd06299 24 AASAAGYSTIIGNS-DENPETENRYLDNLLSQ--------RVDGI-IVVPHEQSAEQLEDLLKRGIPVVFVDR 86 (265)
T ss_pred HHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhc--------CCCEE-EEcCCCCChHHHHHHHhCCCCEEEEec
Confidence 34567887654432 34554443333333322 33444 666655566678888888988766653
No 234
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=31.03 E-value=1.3e+02 Score=27.56 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCCccEEe-------eCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC
Q 025365 6 PNFCAVALALNDLGYKAVGIR-------LDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVR-------lDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g 78 (254)
....++|+++++.|..+ +| .--+...-+..+--++|.++..++|++-++++ .|+..+..+.+ .
T Consensus 29 e~~~~~a~~~~~~g~~~--~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev-------~d~~~v~~~~e-~ 98 (250)
T PRK13397 29 DHIRLAASSAKKLGYNY--FRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI-------MSERQLEEAYD-Y 98 (250)
T ss_pred HHHHHHHHHHHHcCCCE--EEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee-------CCHHHHHHHHh-c
Confidence 45788899998888653 33 22233334455677888888777887655555 99999999987 2
Q ss_pred CcccEEeecCccccc
Q 025365 79 HEVDAFGIGTYLVTC 93 (254)
Q Consensus 79 ~~id~fGVGT~l~t~ 93 (254)
+|.+=||+...+.
T Consensus 99 --vdilqIgs~~~~n 111 (250)
T PRK13397 99 --LDVIQVGARNMQN 111 (250)
T ss_pred --CCEEEECcccccC
Confidence 9999999999985
No 235
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.38 E-value=2.8e+02 Score=23.90 Aligned_cols=64 Identities=20% Similarity=0.024 Sum_probs=38.0
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
..++.+.|+.+.-...| +.......++..+.. +.-+--|+.+...+...+..+.+.|.|+..++
T Consensus 22 ~~~~~~~gy~~~~~~~~--~~~~~~~~~~~~l~~--------~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 22 EGALLEQRYDLALFPLL--SLARLKRYLESTTLA--------YLTDGLLLASYDLTERLAERRLPTERPVVLVD 85 (269)
T ss_pred HHHHHHCCCEEEEEeCC--CcHHHHHHHHHHHHh--------cCCCEEEEecCccChHHHHHHhhcCCCEEEEc
Confidence 33456678887554444 332333333333433 22232277888888888888888898877775
No 236
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=30.28 E-value=89 Score=28.64 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=40.5
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHHh--HhhCCCCCCceEEEEeCCCCHHHHHHHhhc
Q 025365 23 VGIRLDSGDLAYLSCEARKFFRTIE--KEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (254)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~g--~~l~~~g~~~vkI~~S~~lde~~i~~l~~~ 77 (254)
.=||+-+||..|=..++..|.+++. .+++.+|+===-+--.|.+|.+.+++|.+.
T Consensus 56 vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~ 112 (248)
T PRK11572 56 PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA 112 (248)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH
Confidence 3799999999999999888888873 356666641100112678999999999874
No 237
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=30.28 E-value=1.1e+02 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred CceEEEEeCCCCH----HHHHHHhhcCCcccEEeecC
Q 025365 56 EKMSITASNDLNE----ETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 56 ~~vkI~~S~~lde----~~i~~l~~~g~~id~fGVGT 88 (254)
+++-|++++|-.- ..+.++.+.|..+-++|||.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~ 145 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR 145 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc
Confidence 5666899999663 34555667888888888886
No 238
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=30.01 E-value=2.1e+02 Score=26.71 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhc-C-CCccEEeeCCC-ChHHHHHHHHHHHHHH
Q 025365 7 NFCAVALALNDL-G-YKAVGIRLDSG-DLAYLSCEARKFFRTI 46 (254)
Q Consensus 7 nai~va~~l~~~-G-~~~~gVRlDSG-Dl~~ls~~~r~~ld~~ 46 (254)
-+.++.+++++. + .....|++=.| |......++-++|.++
T Consensus 118 ~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~ 160 (312)
T PRK10550 118 LIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQA 160 (312)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhc
Confidence 344555555542 2 12346665444 2212234555566665
No 239
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=29.64 E-value=1.7e+02 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.370 Sum_probs=26.4
Q ss_pred CCCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecCcc
Q 025365 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 54 g~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT~l 90 (254)
+..++-|++++|.+. ..+.++.+.|..+-.+|||+..
T Consensus 107 ~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~ 149 (186)
T cd01471 107 NAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGV 149 (186)
T ss_pred cCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhh
Confidence 334566888988752 3457777788888899999743
No 240
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=29.61 E-value=2.8e+02 Score=22.99 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC
Q 025365 11 VALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 11 va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g 78 (254)
+...+.+....+.+|.+-.|+|.-... +.++++.+.. .|+ .+ .+.|||.+++.+.++.+.|
T Consensus 52 i~~~i~~~~~~~~~i~~sGGEPll~~~-l~~li~~~~~----~g~-~v-~i~TNg~~~~~l~~l~~~g 112 (191)
T TIGR02495 52 LLEFLRSRQGLIDGVVITGGEPTLQAG-LPDFLRKVRE----LGF-EV-KLDTNGSNPRVLEELLEEG 112 (191)
T ss_pred HHHHHHHhcCCCCeEEEECCcccCcHh-HHHHHHHHHH----CCC-eE-EEEeCCCCHHHHHHHHhcC
Confidence 344444433335688998888854333 5566665532 154 45 6678999998888888765
No 241
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=29.45 E-value=4.1e+02 Score=23.66 Aligned_cols=95 Identities=11% Similarity=0.164 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCCCChHHH---H-----------HHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-
Q 025365 3 SGVPNFCAVALALNDLGYKAVGIRLDSGDLAYL---S-----------CEARKFFRTIEKEFGVPDFEKMSITASNDLN- 67 (254)
Q Consensus 3 sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~l---s-----------~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld- 67 (254)
.|+...-.+.+.+++.+ ..-+-+|+||...= + ..+.+.|.+. |+ ++-.+---++|
T Consensus 27 gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~~-------g~-d~~~lGNHe~d~ 96 (277)
T cd07410 27 GGLARVATLIKKARAEN--PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNAL-------GY-DAGTLGNHEFNY 96 (277)
T ss_pred cCHHHHHHHHHHHHhcC--CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHhc-------CC-CEEeecccCccc
Confidence 46777777777777654 34789999998421 1 1245556655 55 33222222333
Q ss_pred -HHHHHHHhh-cCCcccEEeecCcccccCCCCccceEEEEeEEc-Cc
Q 025365 68 -EETLDALNK-QGHEVDAFGIGTYLVTCYAQAALGCVFKLVEIN-KQ 111 (254)
Q Consensus 68 -e~~i~~l~~-~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~-g~ 111 (254)
.+.+.++.+ .+.+. +++++......++..--|++++++ |.
T Consensus 97 g~~~l~~~~~~~~~~~----l~aNv~~~~~~~~~~~~~~i~~~~~g~ 139 (277)
T cd07410 97 GLDYLDKVIKQANFPV----LSANVIDADTGEPFLKPYVILERDVGV 139 (277)
T ss_pred CHHHHHHHHHhCCCCE----EEEEEEeCCCCCcccCCEEEEEecCCC
Confidence 234444433 44443 344444432222333457888888 75
No 242
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.29 E-value=3.3e+02 Score=23.16 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
..++++.|+.+ -+.....|... -..+.+.+... +..-+ |+.+-..+...+.++.+.+.|+..|+..
T Consensus 22 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~~l~~~-------~~dgi-ii~~~~~~~~~~~~~~~~~iPvv~~~~~ 87 (265)
T cd06285 22 EEAAAERGYST-FVANTGDNPDA-QRRAIEMLLDR-------RVDGL-ILGDARSDDHFLDELTRRGVPFVLVLRH 87 (265)
T ss_pred HHHHHHCCCEE-EEEeCCCCHHH-HHHHHHHHHHc-------CCCEE-EEecCCCChHHHHHHHHcCCCEEEEccC
Confidence 34456678876 24333335433 23334444442 44334 5555455666788888889898888754
No 243
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.26 E-value=2.8e+02 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGD 31 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGD 31 (254)
.++.++++|.+.|.+..=|-++|-+
T Consensus 26 ~a~~~~~al~~~Gi~~iEit~~~~~ 50 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEVTYTNPF 50 (213)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCcc
Confidence 4444455554445544444454444
No 244
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.19 E-value=1.8e+02 Score=23.83 Aligned_cols=7 Identities=0% Similarity=0.131 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 025365 40 RKFFRTI 46 (254)
Q Consensus 40 r~~ld~~ 46 (254)
.++|.+.
T Consensus 26 ~~~l~~~ 32 (152)
T cd00886 26 VELLEEA 32 (152)
T ss_pred HHHHHHc
Confidence 3444443
No 245
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=29.11 E-value=2.8e+02 Score=24.95 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=24.5
Q ss_pred ceEEEEeCCCCHHH-------HHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEET-------LDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~-------i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++|++|||++.+. +..+.+.|+. +.-+|..+.+..
T Consensus 196 ~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~--Gis~gr~i~~~~ 238 (267)
T PRK07226 196 PVPVVIAGGPKTDTDREFLEMVRDAMEAGAA--GVAVGRNVFQHE 238 (267)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc--EEehhhhhhcCC
Confidence 57789999998542 4444567754 777777777653
No 246
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=28.87 E-value=3.2e+02 Score=24.45 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=18.3
Q ss_pred EEEeCCCCHHHHHHHhh-cCCcccEEeec
Q 025365 60 ITASNDLNEETLDALNK-QGHEVDAFGIG 87 (254)
Q Consensus 60 I~~S~~lde~~i~~l~~-~g~~id~fGVG 87 (254)
|++....++..+..+.+ .|.|+..|+-+
T Consensus 120 ii~~~~~~~~~~~~l~~~~~iPvV~~d~~ 148 (341)
T PRK10703 120 LVMCSEYPEPLLAMLEEYRHIPMVVMDWG 148 (341)
T ss_pred EEecCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 55555566767777776 67777776643
No 247
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=28.82 E-value=43 Score=30.03 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCChhhhhccC----CcccccccCHHHHHHHHHHHH
Q 025365 205 RERCIKQLEQMRPDHMRRLN----PTPYKVSVSAKLYDFIHFLWL 245 (254)
Q Consensus 205 r~~~~~~l~~L~~~~~rl~~----p~~Y~V~~S~~L~~l~~~L~~ 245 (254)
.+|.++||..|-+-..+... .++||+.+++-|..++++|.+
T Consensus 85 H~~hReqlpeLi~latKverVHgd~p~~p~gl~~~L~~l~~eL~~ 129 (221)
T COG2846 85 HERHREQLPELIPLATKVERVHGDKPSCPAGLAELLEALKEELES 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHH
Confidence 45677888877666555543 337999999999999999875
No 248
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.67 E-value=2.1e+02 Score=27.15 Aligned_cols=70 Identities=9% Similarity=0.240 Sum_probs=50.0
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
.++.-|-+=-|.|..|+ ..+.++++.+...+++..-..+.|-+. +.++.+.+..|.+.|....++||=|.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~ 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSF 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcC
Confidence 44667777779998884 457777777766666543335555555 77999999999999977667776543
No 249
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.38 E-value=2.8e+02 Score=21.74 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCCCccEEeeCCC------------------Ch---HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC
Q 025365 8 FCAVALALNDLGYKAVGIRLDSG------------------DL---AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (254)
Q Consensus 8 ai~va~~l~~~G~~~~gVRlDSG------------------Dl---~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l 66 (254)
+-.+.+.|.+.|++++.|-+..+ |+ ..=...+-+++++++. + |...+ ++++|..
T Consensus 16 g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~-~---g~~~v-~~~~g~~ 90 (116)
T PF13380_consen 16 GYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAA-L---GVKAV-WLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHH-H---T-SEE-EE-TTS-
T ss_pred HHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHH-c---CCCEE-EEEcchH
Confidence 34566777778888888877664 11 1124456777777633 2 55666 9999999
Q ss_pred CHHHHHHHhhcCCc
Q 025365 67 NEETLDALNKQGHE 80 (254)
Q Consensus 67 de~~i~~l~~~g~~ 80 (254)
+++.++...+.|..
T Consensus 91 ~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 91 SEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHcCCE
Confidence 99999999887743
No 250
>PRK15492 triosephosphate isomerase; Provisional
Probab=28.33 E-value=1.6e+02 Score=26.98 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcc
Q 025365 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 38 ~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l 90 (254)
.+|+.|.+. ++-. ..+++|+..|+.++.-+.+|..+. .||+|=||..=
T Consensus 197 ~Ir~~l~~~---~~~~-~~~irILYGGSV~~~N~~~l~~~~-diDG~LvG~aS 244 (260)
T PRK15492 197 VIKQCLIEL---FGDA-GDDIPVFYGGSVNAENANELFGQP-HIDGLFIGRSA 244 (260)
T ss_pred HHHHHHHHH---hccc-cCceeEEEcCccCHHHHHHHhcCC-CCCEEEeehhh
Confidence 355555443 3322 467999999999999999998653 59999998753
No 251
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=28.32 E-value=1.2e+02 Score=27.43 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=38.9
Q ss_pred Eee-CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 25 IRL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 25 VRl-DSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
=|+ |.| |...+.++++++++.. .++||++.+==+...+.+....|+
T Consensus 146 gR~dd~g~D~~~~i~~i~~i~~~~---------~~tkILaAS~R~~~~v~~a~~~Ga 193 (236)
T TIGR02134 146 GRIADTGVDPEPHMREALEIVAQK---------PGVELLWASPRELFNIIQADRIGC 193 (236)
T ss_pred chhhhcCCCcHHHHHHHHHHHHhC---------CCcEEEEEccCCHHHHHHHHHcCC
Confidence 388 765 9999999999999972 488999999889999998887774
No 252
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.31 E-value=3.7e+02 Score=26.34 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=32.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.||++||+ +...|.+.+..| .++..|||.|..+...|.
T Consensus 327 ~vpviadGGi~~~~di~kAla~G--A~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 327 GIPVIADGGIRYSGDIVKALAAG--ADAVMLGSLLAGTTESPG 367 (450)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEECchhhcCCcCCC
Confidence 4669999887 466777777888 788899999999877664
No 253
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=28.23 E-value=1.4e+02 Score=30.39 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC-----------CcccEEeecC
Q 025365 34 YLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG-----------HEVDAFGIGT 88 (254)
Q Consensus 34 ~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g-----------~~id~fGVGT 88 (254)
+....+|+.|+++ ..++..+ ..+-|++|||||=..|..+...- .++..|-||.
T Consensus 205 ~~~~~lr~~L~~aV~~rl~sd--vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~ 269 (578)
T PLN02549 205 YDPLVLREAFEKAVIKRLMTD--VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGL 269 (578)
T ss_pred hHHHHHHHHHHHHHHHHhccC--CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCC
Confidence 4556789999888 5566533 35779999999999999886431 2567787775
No 254
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=28.00 E-value=1.9e+02 Score=24.91 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH------------HHHHHHhhcCCcccEEeecCc
Q 025365 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 29 SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde------------~~i~~l~~~g~~id~fGVGT~ 89 (254)
++++...-..+.++|...+. +-..+.-|++||+-|. ..+.+|.+.|..+..||||+.
T Consensus 105 ~~~l~~aL~~a~~~~~~~~~----~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 105 QVSLSDALWVCLDLFSKGKK----KKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CccHHHHHHHHHHHHHhccc----cccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 46776666677777765211 1123445889998775 334455566888889998875
No 255
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=27.89 E-value=2.6e+02 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=36.8
Q ss_pred hhcCCCccEEeeCCCChH-------HHHHHHHHHHHHHhHhhCCCCCCceE-EEEeC---CCCHHHHHHHhh
Q 025365 16 NDLGYKAVGIRLDSGDLA-------YLSCEARKFFRTIEKEFGVPDFEKMS-ITASN---DLNEETLDALNK 76 (254)
Q Consensus 16 ~~~G~~~~gVRlDSGDl~-------~ls~~~r~~ld~~g~~l~~~g~~~vk-I~~S~---~lde~~i~~l~~ 76 (254)
...|..+..||+.|||+. ..++-+.++++.. ++. |+.|. .-|.+.+..-++
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av----------~vPLIL~gsg~~~kD~eVLeaaLe 211 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV----------DVPIVIGGSGNPEKDPLVLEKAAE 211 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC----------CCCEEEeCCCCCcCCHHHHHHHHH
Confidence 456888899999999998 8888888888774 222 34444 567777776665
No 256
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.70 E-value=2e+02 Score=26.32 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=30.3
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+++|+..|+++..-+.+|... .-+|++.||+.-..
T Consensus 206 ~~~~ILYGGSV~~~N~~~l~~~-~~vDG~LvG~asl~ 241 (255)
T PTZ00333 206 EATRIIYGGSVNEKNCKELIKQ-PDIDGFLVGGASLK 241 (255)
T ss_pred ccceEEEcCCCCHHHHHHHhcC-CCCCEEEEehHhhh
Confidence 4699999999999999999764 23999999987654
No 257
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=27.59 E-value=3.1e+02 Score=23.50 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
..++++.|+.+.-+..+.. . ..++.+.+... . .+.-|+.+...+...+.++.+.|.|+..||.
T Consensus 33 ~~~~~~~g~~~~v~~~~~~---~-~~~~~~~l~~~-------~-~dgiii~~~~~~~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 33 ADALAERGYDLLLSFVSSP---D-RDWLARYLASG-------R-ADGVILIGQHDQDPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHcCCEEEEEeCCch---h-HHHHHHHHHhC-------C-CCEEEEeCCCCChHHHHHHHhCCCCEEEECC
Confidence 3445667888754444332 1 23444444331 2 3443666655677778888888888776653
No 258
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.48 E-value=31 Score=29.14 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
+++|++-||+|++.+.++.+.| .+++.|-
T Consensus 149 ~~pv~AlGGI~~~~i~~l~~~G--a~gvAvi 177 (180)
T PF02581_consen 149 PIPVYALGGITPENIPELREAG--ADGVAVI 177 (180)
T ss_dssp SSCEEEESS--TTTHHHHHHTT---SEEEES
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEE
Confidence 4789999999999999999988 5555543
No 259
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=27.37 E-value=1.8e+02 Score=28.94 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=41.0
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhh-CCCCCCceEEEEe--CCCCHHHHHHHhhcCCcccEEeec
Q 025365 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEF-GVPDFEKMSITAS--NDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l-~~~g~~~vkI~~S--~~lde~~i~~l~~~g~~id~fGVG 87 (254)
.++..|=+--|.|..++ .++.++++.+...+ ++.+...+.+-++ +.+|++.+..|.+.|....++|+=
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQ 288 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQ 288 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCC
Confidence 34445556568887664 34666676664444 4444333323222 379999999999998655555543
No 260
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=27.25 E-value=65 Score=31.84 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=33.3
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCc-ccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~-id~fGVGT~l~t~~ 94 (254)
.+++|++-||++.+.+.++.+.|+. .|+++|++.+.+..
T Consensus 443 ~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~ 482 (502)
T PLN02898 443 SKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQE 482 (502)
T ss_pred CCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCC
Confidence 3678999999999999999999853 56999999998643
No 261
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.19 E-value=2.6e+02 Score=23.36 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCCCceEEEEeCCCC--------HHHHHHHhhcCCcccEEeecC
Q 025365 53 PDFEKMSITASNDLN--------EETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 53 ~g~~~vkI~~S~~ld--------e~~i~~l~~~g~~id~fGVGT 88 (254)
++..++-|++|+|-+ +..+.++++.|..+-+.|||+
T Consensus 107 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 107 QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred CCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 355677799999964 234566778898888888887
No 262
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.14 E-value=2.7e+02 Score=23.91 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=34.7
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+.-+..|..|.......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 26 ~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~--------~vdgi-ii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 26 AKDLGVDVEYRGPETFDVADMARLIEAAIAA--------KPDGI-VVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHhCCEEEEECCCCCCHHHHHHHHHHHHHh--------CCCEE-EEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 3456777644444443766665555555554 33333 55554333 345677777887776664
No 263
>PRK12928 lipoyl synthase; Provisional
Probab=27.05 E-value=3.3e+02 Score=25.17 Aligned_cols=74 Identities=15% Similarity=0.057 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCC---ccEEee-CCCCh--HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC--CHHHHHHHhhc
Q 025365 6 PNFCAVALALNDLGYK---AVGIRL-DSGDL--AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQ 77 (254)
Q Consensus 6 ~nai~va~~l~~~G~~---~~gVRl-DSGDl--~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l--de~~i~~l~~~ 77 (254)
...+++++++.+.|.+ +.|+.. |-.|. ..+..-++++-... +-..+.++..+-+ +.+.+..+.++
T Consensus 90 eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~-------p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 90 DEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARN-------PGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcC-------CCCEEEEeccccccCCHHHHHHHHHc
Confidence 4567788888888876 345543 32332 23333333332221 2235555544333 57789999988
Q ss_pred CCcccEEee
Q 025365 78 GHEVDAFGI 86 (254)
Q Consensus 78 g~~id~fGV 86 (254)
|..+-.+++
T Consensus 163 g~~i~~hnl 171 (290)
T PRK12928 163 KPDVFNHNL 171 (290)
T ss_pred CchhhcccC
Confidence 866655554
No 264
>PRK00876 nadE NAD synthetase; Reviewed
Probab=26.86 E-value=1.5e+02 Score=28.00 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhc-CCcccEEeecCc
Q 025365 30 GDLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ-GHEVDAFGIGTY 89 (254)
Q Consensus 30 GDl~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~-g~~id~fGVGT~ 89 (254)
.|+.....++++.|.+. ..+++ ...|-|..|||+|=-.+..|... ......|+|+-.
T Consensus 10 ~~~~~~~e~i~~~l~~~V~~~~~---~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~ 68 (326)
T PRK00876 10 IDAAAEAERIRAAIREQVRGTLR---RRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMP 68 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC---CCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 57777788888888877 33354 34788999999999999988753 222456776654
No 265
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=26.84 E-value=2.9e+02 Score=21.15 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=6.7
Q ss_pred HHHHHhhcCCCc
Q 025365 11 VALALNDLGYKA 22 (254)
Q Consensus 11 va~~l~~~G~~~ 22 (254)
++..|+..|++.
T Consensus 19 ~~~~l~~~G~~V 30 (119)
T cd02067 19 VARALRDAGFEV 30 (119)
T ss_pred HHHHHHHCCCEE
Confidence 344456667664
No 266
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=26.81 E-value=51 Score=30.54 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=41.6
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhh-------cCCcccEEeecCcccc
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK-------QGHEVDAFGIGTYLVT 92 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~-------~g~~id~fGVGT~l~t 92 (254)
.+=-|+|=|- .|+.+..+.|.+.-. +.+++.|++++||.-..|..=.+ +|...-+|-|||-+..
T Consensus 132 ~YltRPDLGR--rldeesv~~lk~~~~-----~npdvqivVaDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~fV 202 (294)
T COG4302 132 LYLTRPDLGR--RLDEESVEALKAHCV-----ANPDVQIVVADGLSALAITANYEPILPPLMEGLKAAGLSVGTPFFV 202 (294)
T ss_pred heecCccccc--ccCHHHHHHHHHhhc-----cCCCeEEEecCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChhhe
Confidence 3456777774 456666777777532 56799999999999877764322 4444455666665533
No 267
>PRK12376 putative translaldolase; Provisional
Probab=26.79 E-value=1.5e+02 Score=26.82 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=38.4
Q ss_pred ee-CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 26 RL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 26 Rl-DSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
|+ |+| |...+.++++++++. . .+++|++.+==+.+.+.+....|+
T Consensus 147 R~dd~g~D~~~~i~~i~~i~~~--------~-~~tkILaASiR~~~~v~~a~~~Ga 193 (236)
T PRK12376 147 RIADTGVDPVPLMKEALAICHS--------K-PGVELLWASPREVYNIIQADQLGC 193 (236)
T ss_pred hhhhcCCCcHHHHHHHHHHHHh--------C-CCcEEEEEecCCHHHHHHHHHcCC
Confidence 77 765 889999999999986 2 589999999999999999988873
No 268
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=26.45 E-value=76 Score=29.54 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=30.2
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~ 96 (254)
++.|+++||+. ...+......| .|+.-|||.+..+...
T Consensus 161 ~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 161 SIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEeecchHHhccccc
Confidence 46699999995 55588877788 6899999999887654
No 269
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=26.32 E-value=1.3e+02 Score=23.56 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCceEEEEeCCCCH----HHHHHHhhcCCcccEEeecCccc
Q 025365 55 FEKMSITASNDLNE----ETLDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 55 ~~~vkI~~S~~lde----~~i~~l~~~g~~id~fGVGT~l~ 91 (254)
....-|++|+|-+. +.+..+.++|..+..+|+|+.-.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSD 139 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCcc
Confidence 34566999999865 35666667887888888887654
No 270
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=26.29 E-value=45 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.3
Q ss_pred CHHHHHHHhhcCCcccEEeec
Q 025365 67 NEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 67 de~~i~~l~~~g~~id~fGVG 87 (254)
|++.+..|...|.||..||=+
T Consensus 3 d~eV~~~LR~lgePi~lFGE~ 23 (44)
T smart00500 3 DSEVIRRLRELGEPITLFGED 23 (44)
T ss_pred HHHHHHHHHHcCCCeeecCCC
Confidence 677888899999999999844
No 271
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=26.27 E-value=1.4e+02 Score=24.18 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCceEEEEeCCCCHHH----HHHHhhcCCcccEEeecCc
Q 025365 54 DFEKMSITASNDLNEET----LDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~----i~~l~~~g~~id~fGVGT~ 89 (254)
+..++-|+.|+|-+... ...+.+.|..+-++|+|+.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~~ 141 (164)
T cd01472 102 GVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNA 141 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCcC
Confidence 45667799999986543 3356667877777788864
No 272
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=26.22 E-value=1e+02 Score=32.24 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=25.3
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE 68 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde 68 (254)
..|++=.-+=-....+..|+.|++. ||.+||||++++.-+
T Consensus 176 Yvg~~NEr~~~~~~ik~lr~~l~~~-------gy~~vkiva~D~~~~ 215 (669)
T PF02057_consen 176 YVGIWNERGFDVNYIKWLRKALNSN-------GYNKVKIVAADNNWE 215 (669)
T ss_dssp EE-S-TTS---HHHHHHHHHHHHHT-------T-TT-EEEEEEE-ST
T ss_pred EechhhccCCChhHHHHHHHHHhhc-------cccceEEEEeCCCcc
Confidence 3455544454456678899999987 999999999998865
No 273
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.15 E-value=2.1e+02 Score=26.34 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 31 DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 31 Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
|......-+|+.+.+. ++-. .+|+|...|+++...+.++..+ --||++-||+.-..
T Consensus 181 ~a~~v~~~Ir~~~~~~---~~~~--~~v~IlYGGSV~~~N~~e~~~~-~~idG~LVGgAslk 236 (251)
T COG0149 181 DAEEVHAFIRAVLAEL---FGAE--EKVRILYGGSVKPGNAAELAAQ-PDIDGALVGGASLK 236 (251)
T ss_pred HHHHHHHHHHHHHHHh---cCCC--CCeEEEEeCCcChhHHHHHhcC-CCCCeEEEcceeec
Confidence 4444555567666664 2222 7899999999999999999864 34999999987665
No 274
>PLN02389 biotin synthase
Probab=26.08 E-value=5e+02 Score=25.02 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhhcCCCccE----EeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC-CCHHHHHHHhhcCC
Q 025365 5 VPNFCAVALALNDLGYKAVG----IRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND-LNEETLDALNKQGH 79 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~g----VRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~-lde~~i~~l~~~g~ 79 (254)
....++.|+++.+.|.+-.. .|..+|.+.. -.++.++++.+. +. | ..|.+|.| ++++.+.+|.++|
T Consensus 118 ~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik-~~---~---l~i~~s~G~l~~E~l~~LkeAG- 188 (379)
T PLN02389 118 KDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIR-GM---G---MEVCCTLGMLEKEQAAQLKEAG- 188 (379)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCCChhH-HHHHHHHHHHHh-cC---C---cEEEECCCCCCHHHHHHHHHcC-
Confidence 34566777777777765321 2333443222 244555555542 11 2 34666655 8999999999998
Q ss_pred cccEEee
Q 025365 80 EVDAFGI 86 (254)
Q Consensus 80 ~id~fGV 86 (254)
+|.|.+
T Consensus 189 -ld~~~~ 194 (379)
T PLN02389 189 -LTAYNH 194 (379)
T ss_pred -CCEEEe
Confidence 667655
No 275
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=26.05 E-value=3.2e+02 Score=24.58 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=27.7
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||+ +.+.++++.+.| .|..-|||.+...
T Consensus 179 ~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGs~~~~d 214 (223)
T TIGR01768 179 KARLFVGGGIRSVEKAREMAEAG--ADTIVTGNVIEED 214 (223)
T ss_pred CCCEEEecCCCCHHHHHHHHHcC--CCEEEECcHHhhC
Confidence 4678899988 567778888777 7888899988764
No 276
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=26.03 E-value=3.8e+02 Score=22.18 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=35.5
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
+++.|+++ -++.+..|+......++..... +. +.-|+...+-+...+..+.++|.|+..++..
T Consensus 25 ~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~-d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 25 AREAGYSV-LLCNSDEDPEKEREALELLLSR--------RV-DGIILAPSRLDDELLEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHcCCEE-EEEcCCCCHHHHHHHHHHHHHc--------Cc-CEEEEecCCcchHHHHHHHHcCCCEEEeccc
Confidence 44567776 3666666765554445544432 33 3324444443333377788889887777654
No 277
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=25.99 E-value=65 Score=28.70 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecC
Q 025365 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 10 ~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT 88 (254)
++...|+..||++..+| +....++|+.+++. ++++..+=++..+++++-. ...|+|-
T Consensus 75 EL~e~Lk~~g~Rf~n~r------aeyIVeaR~~~~~l------------k~~v~~~~~~~vaRE~Lv~----nikGiGy 131 (210)
T COG1059 75 ELREKLKEVGYRFYNVR------AEYIVEAREKFDDL------------KIIVKADENEKVARELLVE----NIKGIGY 131 (210)
T ss_pred HHHHHHHHhcchhcccc------hHHHHHHHHHHHHH------------HHHHhcCcchHHHHHHHHH----HcccccH
Confidence 35556777788888877 34566667776543 4555666677778887642 4677773
No 278
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.93 E-value=3.4e+02 Score=23.09 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=35.9
Q ss_pred HHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
.++.+.|+.+. -..+. |.... .+..+.+.+. +..-+ |+++...+...+.++.+.+.|+..|+-
T Consensus 23 ~~~~~~gy~v~--~~~~~~~~~~~-~~~i~~~~~~-------~~dgi-ii~~~~~~~~~~~~~~~~~~pvV~i~~ 86 (269)
T cd06293 23 EEADARGLSLV--LCATRNRPERE-LTYLRWLDTN-------HVDGL-IFVTNRPDDGALAKLINSYGNIVLVDE 86 (269)
T ss_pred HHHHHCCCEEE--EEeCCCCHHHH-HHHHHHHHHC-------CCCEE-EEeCCCCCHHHHHHHHhcCCCEEEECC
Confidence 34556788763 33443 54333 3333334332 33334 777666677778888888888777653
No 279
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=25.85 E-value=2.8e+02 Score=23.80 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=34.5
Q ss_pred HHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+.-+..|+ +|.......++.+++. +. +.-|+.+.+-+ ...+..+.+.|.|+..++
T Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--------~v-dgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 23 NEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINK--------GY-KGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHh--------CC-CEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 34556788876555566 4654444444444443 33 32255433222 235677777887776654
No 280
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.84 E-value=3.3e+02 Score=23.12 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG 87 (254)
+++++.|+.+.-...+ +|.......++.++.. +..-+ |+.+.+.+...+.++.++|.|+..|+-.
T Consensus 23 ~~~~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~--------~vdgi-ii~~~~~~~~~~~~~~~~~ipvV~~~~~ 87 (264)
T cd06274 23 ALARERGYQLLIACSD-DDPETERETVETLIAR--------QVDAL-IVAGSLPPDDPYYLCQKAGLPVVALDRP 87 (264)
T ss_pred HHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHc--------CCCEE-EEcCCCCchHHHHHHHhcCCCEEEecCc
Confidence 3355678776333332 3544443333333322 33333 6666655655578888888887777544
No 281
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.83 E-value=2.8e+02 Score=23.65 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=33.7
Q ss_pred HhhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlD-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+.-+..+ .+|+......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 25 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--------~vdgv-ii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (273)
T cd06310 25 AKELGVKVTFQGPASETDVAGQVNLLENAIAR--------GPDAI-LLAPTDAKALVPPLKEAKDAGIPVVLID 89 (273)
T ss_pred HHHcCCEEEEecCccCCCHHHHHHHHHHHHHh--------CCCEE-EEcCCChhhhHHHHHHHHHCCCCEEEec
Confidence 45678876544444 45765544444444332 33223 55554433 246677777787776664
No 282
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.77 E-value=1.3e+02 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.8
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .|...|||.++.
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aG--Ad~V~v~~~~~~ 323 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAG--ASLVQIYSGLIY 323 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 5779999887 567777777788 778889998865
No 283
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.74 E-value=1.2e+02 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCCceEEEEeCCCCHHH----HHHHhhcCCcccEEeecC
Q 025365 54 DFEKMSITASNDLNEET----LDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~----i~~l~~~g~~id~fGVGT 88 (254)
+.+++-|++|+|-.... +.++.+.|..+..+|+|.
T Consensus 102 ~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~ 140 (164)
T cd01482 102 GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKD 140 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 45667799999876433 445667887777778875
No 284
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=25.52 E-value=4.1e+02 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGV 86 (254)
+.-|+++.+++...+..+.+.|.|+..|+-
T Consensus 57 dgii~~~~~~~~~~~~~~~~~~ipvV~~~~ 86 (268)
T cd06270 57 DALILHSKALSDDELIELAAQVPPLVLINR 86 (268)
T ss_pred CEEEEecCCCCHHHHHHHhhCCCCEEEEec
Confidence 333666767777668888888988877764
No 285
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=25.51 E-value=2.7e+02 Score=26.19 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=30.4
Q ss_pred ceEEE--EeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSIT--ASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~--~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+ +-||+ +++.+..+.+.| .|++-||+.+..+.
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melG--AdGVaVGSaI~ks~ 235 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSS 235 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcC--CCEEEEhHHhhcCC
Confidence 35566 99999 999999999988 88888999998654
No 286
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=25.41 E-value=3.1e+02 Score=26.03 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=51.6
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEE-eCCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITA-SNDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~-S~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
.++.-|-+=-|+|..|+ .+.+++++.+...|++.....+.|=+ -+.++.+.++.|.+.|..-.++||=|.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~ 125 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQAL 125 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 45667777779999885 46888888887667655433444433 378999999999999988888888664
No 287
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=25.24 E-value=38 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHH
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLD 72 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~ 72 (254)
|+.+.++.|.+.. .++ .+|.|++|+||+-..|.
T Consensus 87 L~~~s~~~L~~~~----~~~-~Dv~iViaDGLSa~Av~ 119 (237)
T PF05985_consen 87 LSEESRARLKELC----EKG-PDVQIVIADGLSARAVE 119 (237)
T ss_dssp B-HHHHHHHHHHS-----SS--SEEEEEE-TT-HHHHH
T ss_pred CCHHHHHHHHHhc----CCC-CCEEEEEcCCCCHHHHH
Confidence 5667777787752 123 78999999999998884
No 288
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.06 E-value=2.5e+02 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=18.6
Q ss_pred eEEEEeCCC-CHHHHHHHhh-cCCcccEEeecCcccc
Q 025365 58 MSITASNDL-NEETLDALNK-QGHEVDAFGIGTYLVT 92 (254)
Q Consensus 58 vkI~~S~~l-de~~i~~l~~-~g~~id~fGVGT~l~t 92 (254)
+.|+++||+ +.+.+.++.+ .| .|+..||+.+..
T Consensus 193 ipvi~nGgI~~~~da~~~l~~~g--ad~VmigR~~l~ 227 (319)
T TIGR00737 193 IPVIGNGDIFSPEDAKAMLETTG--CDGVMIGRGALG 227 (319)
T ss_pred CcEEEeCCCCCHHHHHHHHHhhC--CCEEEEChhhhh
Confidence 456666666 3445555553 33 666666666654
No 289
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=24.83 E-value=1.2e+02 Score=23.68 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=26.1
Q ss_pred CCCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecC
Q 025365 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 54 g~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT 88 (254)
+..++-|++|+|.+. ..+.++.++|..+..+|+|.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 345566888888654 34667777898999999997
No 290
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=24.59 E-value=90 Score=28.88 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=29.7
Q ss_pred EEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHH
Q 025365 24 GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA 73 (254)
Q Consensus 24 gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~ 73 (254)
=-|+|.|- .|+.+.++.|.+. . ..-.+|.|++++||+-..|..
T Consensus 85 L~RPDLGR--~L~~~s~~~L~~~---~--~~~~Dv~iViaDGLSa~Av~~ 127 (260)
T PRK05465 85 LTRPDLGR--RLSDESREALKAQ---C--GKNPDVQIVVADGLSALAVEA 127 (260)
T ss_pred hcCCCCCC--CCCHHHHHHHHHh---c--CCCCcEEEEEcCCCCHHHHHH
Confidence 34777775 3566677777653 0 123589999999999887763
No 291
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=24.37 E-value=2.1e+02 Score=25.70 Aligned_cols=62 Identities=24% Similarity=0.256 Sum_probs=40.1
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+ -+ ..|++-...- ++.+.|.+. +++ -+ |++|...+...+..+.+.+.|+..++
T Consensus 25 ~~a~~~Gy~l-~l-~~t~~~~~~e-~~i~~l~~~----~vD---Gi-I~~s~~~~~~~l~~~~~~~iPvV~~~ 86 (279)
T PF00532_consen 25 QEAREHGYQL-LL-CNTGDDEEKE-EYIELLLQR----RVD---GI-ILASSENDDEELRRLIKSGIPVVLID 86 (279)
T ss_dssp HHHHHTTCEE-EE-EEETTTHHHH-HHHHHHHHT----TSS---EE-EEESSSCTCHHHHHHHHTTSEEEEES
T ss_pred HHHHHcCCEE-EE-ecCCCchHHH-HHHHHHHhc----CCC---EE-EEecccCChHHHHHHHHcCCCEEEEE
Confidence 3456678876 22 5666544444 555556552 333 34 88898888888999888888876654
No 292
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.34 E-value=1e+02 Score=27.30 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=29.7
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccc
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~ 91 (254)
.+++|+..|+++...+.+|..+ .-+|++.||+.-.
T Consensus 168 ~~~~IlYGGSV~~~N~~~l~~~-~~iDG~LvG~Asl 202 (205)
T TIGR00419 168 ESVRVLCGAGISTGEDAELAAQ-LGAEGVLLASGSL 202 (205)
T ss_pred CCceEEEeCCCCHHHHHHHhcC-CCCCEEEEeeeee
Confidence 5799999999999999999764 2399999998654
No 293
>PRK00549 competence damage-inducible protein A; Provisional
Probab=24.11 E-value=1.5e+02 Score=28.76 Aligned_cols=50 Identities=14% Similarity=0.091 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld 67 (254)
|+-.++..|.+.|+.+..+.+=.-|+..+...+++.++. .++ ||.|||+-
T Consensus 21 N~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~----------~Dl-VItTGGlG 70 (414)
T PRK00549 21 NAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEER----------SDL-IITTGGLG 70 (414)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccC----------CCE-EEECCCCC
Confidence 666778889999988766666555655555444443321 356 88888764
No 294
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.11 E-value=3.2e+02 Score=23.36 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHHHhhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEee
Q 025365 12 ALALNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFGI 86 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlD-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fGV 86 (254)
..++.+.|..+.-+..+ .+|+......++.++.. +. +.-|+.+.+.+ ...+..+.+.|.|+..++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~-dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~ 90 (271)
T cd06321 22 EAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAA--------KV-DLILLNAVDSKGIAPAVKRAQAAGIVVVAVDV 90 (271)
T ss_pred HHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHh--------CC-CEEEEeCCChhHhHHHHHHHHHCCCeEEEecC
Confidence 34455534443333333 46765554444444332 33 33266554432 3567788888888777754
No 295
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.07 E-value=2.5e+02 Score=24.24 Aligned_cols=72 Identities=29% Similarity=0.263 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCccE-EeeC---CC--ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCC
Q 025365 7 NFCAVALALNDLGYKAVG-IRLD---SG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (254)
Q Consensus 7 nai~va~~l~~~G~~~~g-VRlD---SG--Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~ 79 (254)
+.+++|+.+.+.|.+..- +=+| .| ....+.+++++ + .++.|+++||+. .+.++++...|
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~---~----------~~~pv~~~GGI~~~ed~~~~~~~G- 96 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVK---A----------VDIPVQVGGGIRSLETVEALLDAG- 96 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHH---H----------CCCCEEEcCCcCCHHHHHHHHHcC-
Confidence 678888888887755322 2122 12 33333333322 2 245688888885 57888888888
Q ss_pred cccEEeecCccccc
Q 025365 80 EVDAFGIGTYLVTC 93 (254)
Q Consensus 80 ~id~fGVGT~l~t~ 93 (254)
++..-+||.+..+
T Consensus 97 -a~~vilg~~~l~~ 109 (233)
T PRK00748 97 -VSRVIIGTAAVKN 109 (233)
T ss_pred -CCEEEECchHHhC
Confidence 5566799998874
No 296
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=24.05 E-value=1e+02 Score=30.97 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=38.9
Q ss_pred CccEEeeCCC---ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 21 KAVGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 21 ~~~gVRlDSG---Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
+..||=+-|= .-..+..++++++.++ |.+.. +|+.|-+|+.+++.|.+ ||+|
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~-------GkK~y-l~~vgkinpaKLaNF~e----ID~f 336 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTA-------GKKHY-LFVVGKPNPAKLANFED----IDIF 336 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHc-------CCcEE-EEEeCCCCHHHHhCCCC----CCEE
Confidence 4457766661 2246778899999998 76555 99999999999988853 7887
No 297
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=23.59 E-value=2.5e+02 Score=24.15 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCc-cEE---eeC--CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCC
Q 025365 7 NFCAVALALNDLGYKA-VGI---RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (254)
Q Consensus 7 nai~va~~l~~~G~~~-~gV---RlD--SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~ 79 (254)
+.+++|+++.+.|... .-+ +.. .|....+.+++ ..+ .++.+++.|++. .+.++++.+.|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i---~~~----------~~~pv~~~GgI~~~e~~~~~~~~G- 95 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEI---VKA----------VGIPVQVGGGIRSLEDIERLLDLG- 95 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHH---HHh----------cCCCEEEeCCcCCHHHHHHHHHcC-
Confidence 6778888888777542 222 121 22222222222 222 235688888865 48888888888
Q ss_pred cccEEeecCccccc
Q 025365 80 EVDAFGIGTYLVTC 93 (254)
Q Consensus 80 ~id~fGVGT~l~t~ 93 (254)
.|..-||+.+.++
T Consensus 96 -ad~vvigs~~l~d 108 (234)
T cd04732 96 -VSRVIIGTAAVKN 108 (234)
T ss_pred -CCEEEECchHHhC
Confidence 6677789998874
No 298
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.56 E-value=95 Score=27.26 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++.|++=||++.+.+.++.+.| ++++.|-+.+..+.
T Consensus 157 ~~~PV~AiGGI~~~ni~~l~~~G--a~GiAvisai~~~~ 193 (211)
T PRK03512 157 ADYPTVAIGGISLERAPAVLATG--VGSIAVVSAITQAA 193 (211)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEhhHhhCCC
Confidence 35789999999999999999888 78888888887654
No 299
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.50 E-value=3.4e+02 Score=23.14 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHH-----HHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEE-----TLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~-----~i~~l~~~g~~id~fG 85 (254)
++++.|+.+. + .++ .|......-++.++.. +..-+ |+++...+.. .+..+.+.|.|+..+|
T Consensus 24 ~~~~~g~~~~-~-~~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~i~~~~~~~ipvV~i~ 90 (273)
T cd06292 24 ALAQYGYTVL-L-CNTYRGGVSEADYVEDLLAR--------GVRGV-VFISSLHADTHADHSHYERLAERGLPVVLVN 90 (273)
T ss_pred HHHHCCCEEE-E-EeCCCChHHHHHHHHHHHHc--------CCCEE-EEeCCCCCcccchhHHHHHHHhCCCCEEEEc
Confidence 3455788763 2 344 3443333333333332 33233 6666544443 3788888888877765
No 300
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=23.39 E-value=3.7e+02 Score=25.61 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++|++ +.+.+.++.++|. .|..++|-.++..
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~lad 325 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKSGI-LDLIGAARPSIAD 325 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhhhC
Confidence 4568888888 5788888887764 7888899888874
No 301
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=23.28 E-value=49 Score=31.12 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=24.2
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCCCC
Q 025365 3 SGVPNFCAVALALNDLGYKAVGIRLDSGD 31 (254)
Q Consensus 3 sGv~nai~va~~l~~~G~~~~gVRlDSGD 31 (254)
.||--||..-..|.++|. +.||=+||||
T Consensus 131 ~gvyvaiQAVLtLYAQGL-~tGvVvDSGD 158 (389)
T KOG0677|consen 131 GGVYVAIQAVLTLYAQGL-LTGVVVDSGD 158 (389)
T ss_pred CeEEehHHHHHHHHHhcc-cceEEEecCC
Confidence 477789999999999876 6799999998
No 302
>PRK15108 biotin synthase; Provisional
Probab=23.16 E-value=6.2e+02 Score=23.86 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCC-ccEEeeCCC-Ch-HHHHHHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcc
Q 025365 6 PNFCAVALALNDLGYK-AVGIRLDSG-DL-AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEV 81 (254)
Q Consensus 6 ~nai~va~~l~~~G~~-~~gVRlDSG-Dl-~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~i 81 (254)
...++.|+++.+.|.+ +.++ =|| ++ ......+.+++..+.. . | +.+++| |.++++.+.+|.+.| +
T Consensus 79 eEI~~~a~~~~~~G~~~i~i~--~~g~~p~~~~~e~i~~~i~~ik~-~---~---i~v~~s~G~ls~e~l~~LkeAG--l 147 (345)
T PRK15108 79 EQVLESARKAKAAGSTRFCMG--AAWKNPHERDMPYLEQMVQGVKA-M---G---LETCMTLGTLSESQAQRLANAG--L 147 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEE--ecCCCCCcchHHHHHHHHHHHHh-C---C---CEEEEeCCcCCHHHHHHHHHcC--C
Confidence 4456677777766654 2222 111 22 1112334444443321 1 3 344555 668999999999999 6
Q ss_pred cEEee
Q 025365 82 DAFGI 86 (254)
Q Consensus 82 d~fGV 86 (254)
|.|.+
T Consensus 148 d~~n~ 152 (345)
T PRK15108 148 DYYNH 152 (345)
T ss_pred CEEee
Confidence 66654
No 303
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=22.95 E-value=2.3e+02 Score=24.62 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCC
Q 025365 7 NFCAVALALNDLGYK-AVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (254)
Q Consensus 7 nai~va~~l~~~G~~-~~gVRlDS-----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~ 79 (254)
+.+++|+.+.+.|.+ +.-+=+|. |....+ ++++.++ .++.++++||+. .+.+.++.+.|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~---~~~i~~~----------~~~pv~~~ggi~~~~d~~~~~~~G- 96 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFEL---ISNLAEE----------CFMPLTVGGGIRSLEDAKKLLSLG- 96 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHH---HHHHHHh----------CCCCEEEECCCCCHHHHHHHHHcC-
Confidence 678889988887765 23333333 333222 2333333 245688888887 67888888877
Q ss_pred cccEEeecCccccc
Q 025365 80 EVDAFGIGTYLVTC 93 (254)
Q Consensus 80 ~id~fGVGT~l~t~ 93 (254)
++..-+||.+...
T Consensus 97 -~~~vilg~~~l~~ 109 (232)
T TIGR03572 97 -ADKVSINTAALEN 109 (232)
T ss_pred -CCEEEEChhHhcC
Confidence 5566788888763
No 304
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.91 E-value=4e+02 Score=25.92 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=47.5
Q ss_pred CCccEEeeCCCChHHH-HHHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 20 YKAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 20 ~~~~gVRlDSGDl~~l-s~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
..+..|-+--|.+..+ ..++.++++.+...+++..-..+.|-+. +.++++.+..|.+.|....++||=|.
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4466777777888766 5667888887766565432223444443 36999999999999977667776554
No 305
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=22.73 E-value=1.4e+02 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=24.8
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 58 vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
+.|++++|.+++.|.++.+. .|++=|||++=.
T Consensus 201 ~PVlvGSGvt~~Ni~~~l~~---ADG~IVGS~~K~ 232 (254)
T PF03437_consen 201 VPVLVGSGVTPENIAEYLSY---ADGAIVGSYFKK 232 (254)
T ss_pred CCEEEecCCCHHHHHHHHHh---CCEEEEeeeeee
Confidence 66888888888888888764 677778888754
No 306
>PRK07360 FO synthase subunit 2; Reviewed
Probab=22.62 E-value=2.6e+02 Score=26.57 Aligned_cols=68 Identities=22% Similarity=0.374 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCCCcc----EEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEE------------eCCCCHH
Q 025365 6 PNFCAVALALNDLGYKAV----GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITA------------SNDLNEE 69 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~----gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~------------S~~lde~ 69 (254)
...++.|+++.+.|.+-. |.+++-.++.++. +++++... .++++.|.+ .|-++++
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~----~~i~~ik~-----~~~~i~i~a~s~~ei~~~~~~~G~~~~e 164 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYL----EILEAIKE-----EFPDIHLHAFSPMEVYFAAREDGLSYEE 164 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHH----HHHHHHHH-----hCCCcceeeCCHHHHHHHHhhcCCCHHH
Confidence 446777888888886532 3333222233333 33333321 235666765 2556788
Q ss_pred HHHHHhhcCCcccEE
Q 025365 70 TLDALNKQGHEVDAF 84 (254)
Q Consensus 70 ~i~~l~~~g~~id~f 84 (254)
.+++|.++| +|.+
T Consensus 165 ~l~~LkeAG--ld~~ 177 (371)
T PRK07360 165 VLKALKDAG--LDSM 177 (371)
T ss_pred HHHHHHHcC--CCcC
Confidence 899999988 4444
No 307
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=22.46 E-value=4.7e+02 Score=25.32 Aligned_cols=62 Identities=15% Similarity=0.027 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g 78 (254)
-.++.+++.|.++|..+.+|..|+++. .+...+++++.+. + .+ +++.+.-|.+.+.++.+..
T Consensus 310 ~~~~~l~~~L~elG~~~~~v~~~~~~~-~~~~~l~~~~~~~-------~-~~--~~v~~~~d~~e~~~~l~~~ 371 (429)
T cd03466 310 DFVVAITRFVLENGMVPVLIATGSESK-KLKEKLEEDLKEY-------V-EK--CVILDGADFFDIESYAKEL 371 (429)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCh-HHHHHHHHHHHhc-------C-Cc--eEEEeCCCHHHHHHHHHhc
Confidence 356777888888888888888887653 2233333344332 1 22 4445556788888877654
No 308
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=22.43 E-value=3.4e+02 Score=23.45 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=33.5
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC--CCHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~--lde~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+ +-.++.|.......++.+... +. +.-|+.+.+ .....+..+.+.|.|+..|+
T Consensus 23 ~~~~~~g~~~--~~~~~~~~~~~~~~i~~~~~~--------~~-dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 23 KAAKEKGFTV--VKIDVPDGEKVLSAIDNLGAQ--------GA-KGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred HHHHHcCCEE--EEccCCCHHHHHHHHHHHHHc--------CC-CEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 3455678765 445666653333323332221 22 332555543 34556788888888877765
No 309
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=22.26 E-value=4.4e+02 Score=22.15 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+. -..+.+.......+++++.. +.-+.-|+.+...+...+..+.+.+.|+..|+
T Consensus 27 ~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~--------~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~ 89 (268)
T cd06271 27 EALAEHGYDLV--LLPVDPDEDPLEVYRRLVES--------GLVDGVIISRTRPDDPRVALLLERGFPFVTHG 89 (268)
T ss_pred HHHHHCCceEE--EecCCCcHHHHHHHHHHHHc--------CCCCEEEEecCCCCChHHHHHHhcCCCEEEEC
Confidence 33456677652 22333333344455655543 21233255555445456777777887777664
No 310
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=22.00 E-value=1.2e+02 Score=28.61 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=32.0
Q ss_pred cEEeeCCC---ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 23 VGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 23 ~gVRlDSG---Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
.||=+-|= .-..+.+++++++.++ |.+.. +++.|.+|+.++..+. .+|+|
T Consensus 235 vGIlvgTl~~q~~~~~~~~l~~ll~~~-------gkk~y-~i~~~~in~~kL~nf~----eiD~f 287 (332)
T TIGR00322 235 FGVVLSSKGGQGRLRLAKNLKKNLEEA-------GKTVL-IILLSNVSPAKLLMFD----QIDVF 287 (332)
T ss_pred EEEEEecCccCCCHHHHHHHHHHHHHc-------CCcEE-EEEeCCCCHHHHhCCC----CcCEE
Confidence 45555441 1134667777777776 65444 8888888888887664 26666
No 311
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.98 E-value=3.5e+02 Score=26.45 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=47.1
Q ss_pred ccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEEe---CCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 22 AVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS---NDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S---~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
+.-|=+--|.+..|+ .++.++++.+...+.+.. ++.|.+. +.+|++.+..+.+.|....++||=|.
T Consensus 115 i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 115 IHAVYFGGGTPTALSAEDLARLITALREYLPLAP--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHhCCCCC--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 445555568887765 447777777766565542 3445554 77999999999999998889998773
No 312
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=21.90 E-value=2.2e+02 Score=25.80 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++.+....+.+. + -.++.|+++||+ +-+.+.++...| .++.+|+|.+..
T Consensus 228 p~aL~~V~~~~~~---~----~~~i~Iig~GGI~s~~da~e~l~aG--A~~Vqv~Sal~~ 278 (295)
T PF01180_consen 228 PIALRWVRELRKA---L----GQDIPIIGVGGIHSGEDAIEFLMAG--ASAVQVCSALIY 278 (295)
T ss_dssp HHHHHHHHHHHHH---T----TTSSEEEEESS--SHHHHHHHHHHT--ESEEEESHHHHH
T ss_pred hHHHHHHHHHHhc---c----ccceEEEEeCCcCCHHHHHHHHHhC--CCHheechhhhh
Confidence 4555544444443 1 146889999997 567888888899 788999998854
No 313
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=21.83 E-value=1.3e+02 Score=28.11 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=35.3
Q ss_pred CccEEeeCC----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 21 KAVGIRLDS----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 21 ~~~gVRlDS----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
+-.||=+.| |. ..+.+++++++.++ |.+. -+++.|.+|++++..| + +|+|
T Consensus 213 ~~vGIlvgTl~~q~~-~~~~~~l~~ll~~~-------gkk~-y~i~~~~in~~kL~nf-~----iD~f 266 (308)
T TIGR03682 213 KKFGILVSTKKGQRR-PELAEELKKLLEEL-------GKEA-LLILLDNISPDQLRNL-D----FDAY 266 (308)
T ss_pred CeEEEEEEccCcCCC-HHHHHHHHHHHHHc-------CCeE-EEEEeCCCCHHHHhcC-C----cCEE
Confidence 334665555 33 34677788888887 6544 4899999999999877 2 7777
No 314
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=21.83 E-value=57 Score=31.28 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHHHHhhcCCcccEEeecCccccc
Q 025365 70 TLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 70 ~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.|..|+++|+|||+.|+=+++...
T Consensus 209 lI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 209 LIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHCCCCccceeeeeeecCC
Confidence 688899999999999999997654
No 315
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=21.66 E-value=88 Score=28.61 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=27.7
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
-+.|.-||=-+.+.+..+...| .|+|=|||+|+.+.+
T Consensus 210 ~~~iseSGI~~~~d~~~l~~~G--~davLVGe~lm~~~d 246 (254)
T PF00218_consen 210 VIVISESGIKTPEDARRLARAG--ADAVLVGEALMRSPD 246 (254)
T ss_dssp SEEEEESS-SSHHHHHHHCTTT---SEEEESHHHHTSSS
T ss_pred eeEEeecCCCCHHHHHHHHHCC--CCEEEECHHHhCCCC
Confidence 3545555555689999999988 899999999998654
No 316
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.55 E-value=4.4e+02 Score=24.68 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=45.5
Q ss_pred HHHHHHHhhc--CCCccEEeeCCCChHHHHHHH-HHHHHHHhHhhCCCCCCceEEEE-eCCCCHHHHHHHhhcCCcccEE
Q 025365 9 CAVALALNDL--GYKAVGIRLDSGDLAYLSCEA-RKFFRTIEKEFGVPDFEKMSITA-SNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 9 i~va~~l~~~--G~~~~gVRlDSGDl~~ls~~~-r~~ld~~g~~l~~~g~~~vkI~~-S~~lde~~i~~l~~~g~~id~f 84 (254)
-++.++++.. +..+.-|-+-.|.+..+.... ..+++... .+++.+--.+.|-+ .+.++++.+..|.+.|..-.++
T Consensus 37 ~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~-~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsi 115 (374)
T PRK05799 37 KALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIK-KLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSI 115 (374)
T ss_pred HHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHH-hCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEE
Confidence 3455565432 234567888888887665543 33444432 24433222333322 3569999999999999766666
Q ss_pred ee
Q 025365 85 GI 86 (254)
Q Consensus 85 GV 86 (254)
||
T Consensus 116 Gv 117 (374)
T PRK05799 116 GL 117 (374)
T ss_pred EC
Confidence 66
No 317
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=21.50 E-value=2.8e+02 Score=20.89 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=25.9
Q ss_pred CCCceEEEEeCCCCH-------HHHHHHhhcCCcccEEeecC
Q 025365 54 DFEKMSITASNDLNE-------ETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 54 g~~~vkI~~S~~lde-------~~i~~l~~~g~~id~fGVGT 88 (254)
+...+-|++|++.+. ..+..+.+.+..+..+|+|+
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC
Confidence 345556899988875 34666666788899999998
No 318
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=21.46 E-value=5.8e+02 Score=24.20 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE-
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF- 84 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f- 84 (254)
++..+-+.+|-+.|.....|=+|+-+. .+..+.+++.+... -++++.|++.+=-+.+.+..+.+.|+.....
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~g--h~~~~~e~I~~ir~-----~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHG--HSDSVINMIQHIKK-----HLPETFVIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCC--chHHHHHHHHHHHh-----hCCCCeEEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 344555667777776556888988442 12222222333211 2467778998888999999999999765433
Q ss_pred -eecCc
Q 025365 85 -GIGTY 89 (254)
Q Consensus 85 -GVGT~ 89 (254)
|=||.
T Consensus 169 ~~~G~~ 174 (326)
T PRK05458 169 IGPGKV 174 (326)
T ss_pred CCCCcc
Confidence 44544
No 319
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=21.21 E-value=3.5e+02 Score=23.94 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=33.4
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+.-+.....|.......++.++.. +. +.-|+.+.+.+ ...+.++.+.|.|+..|+
T Consensus 25 a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~--------~~-DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v~ 88 (298)
T cd06302 25 AKELGVDAIYVGPTTADAAGQVQIIEDLIAQ--------GV-DAIAVVPNDPDALEPVLKKAREAGIKVVTHD 88 (298)
T ss_pred HHHhCCeEEEECCCCCCHHHHHHHHHHHHhc--------CC-CEEEEecCCHHHHHHHHHHHHHCCCeEEEEc
Confidence 4456766532222235665554444444432 33 43266655545 455677777888877765
No 320
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=21.11 E-value=1.6e+02 Score=24.09 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCccEEe--------------eCC-CChHHHHHHHHHHHHH
Q 025365 11 VALALNDLGYKAVGIR--------------LDS-GDLAYLSCEARKFFRT 45 (254)
Q Consensus 11 va~~l~~~G~~~~gVR--------------lDS-GDl~~ls~~~r~~ld~ 45 (254)
|-.+|++.|..+.++- +-| ||+..|++++|+.||.
T Consensus 73 vi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~gdp~~lA~~vr~Ald~ 122 (123)
T PF07485_consen 73 VISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVGDPAKLARKVRAALDV 122 (123)
T ss_pred HHHHHHHCCceEEEEecccccCCCCEEEEEEEecCCHHHHHHHHHHHHhc
Confidence 3445667776655543 222 9999999999999985
No 321
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=21.09 E-value=5e+02 Score=21.80 Aligned_cols=63 Identities=16% Similarity=0.027 Sum_probs=33.4
Q ss_pred HHHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 12 a~~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
..++++.|+.+.- .++ .|.......++.+... +. +.-|+.+...+...+..+.+.|.|+..++
T Consensus 22 ~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~--------~v-dgiii~~~~~~~~~~~~~~~~~ipvv~~~ 85 (268)
T cd01575 22 SDVLEAAGYQLLL--GNTGYSPEREEELLRTLLSR--------RP-AGLILTGLEHTERTRQLLRAAGIPVVEIM 85 (268)
T ss_pred HHHHHHcCCEEEE--ecCCCCchhHHHHHHHHHHc--------CC-CEEEEeCCCCCHHHHHHHHhcCCCEEEEe
Confidence 3456677877633 333 2433333323333222 33 33366665556667777878887766553
No 322
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=21.05 E-value=4.4e+02 Score=23.35 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=35.1
Q ss_pred cCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceE--EEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 18 LGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMS--ITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 18 ~G~~~~gVRlDSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vk--I~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|+++.-+..|++ |+..-...++++.++ .+|. |...++. .+..+..+.+.+.|+..++.++...+
T Consensus 38 ~G~~v~l~~~D~~~d~~~~~~~~~~l~~~----------~~v~avig~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~ 106 (336)
T cd06326 38 NGRKIELVTLDDGYEPERTVANTRKLIED----------DKVFALFGYVGTPTTAAALPLLEEAGVPLVGPFTGASSLR 106 (336)
T ss_pred CCceEEEEEeCCCCChHHHHHHHHHHHhh----------cCcEEEEeCCCchhHHHHHHHHHHcCCeEEEecCCcHHhc
Confidence 3677777778875 666555556665553 1333 2222333 33334445566777766665654433
No 323
>PRK03673 hypothetical protein; Provisional
Probab=20.98 E-value=2.4e+02 Score=27.43 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE 68 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde 68 (254)
|+--++.+|.+.|+.+..+..=.-|+..+...+++.++. .++ ||.|||+-.
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~----------~Dl-VI~tGGlGp 72 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQH----------ADV-LIVNGGLGP 72 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcc----------CCE-EEEcCCCCC
Confidence 677788889999987644443334444444444444332 356 888888743
No 324
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.98 E-value=4e+02 Score=23.29 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=34.0
Q ss_pred HHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+.- .+++ |.......++.++.. +..-+ |+.+.+.+ ...+.++.++|.|+..++
T Consensus 23 ~~a~~~g~~~~~--~~~~~~~~~~~~~i~~~~~~--------~vdgi-ii~~~~~~~~~~~l~~l~~~~ipvV~~~ 87 (288)
T cd01538 23 AALKELGAEVIV--QNANGDPAKQISQIENMIAK--------GVDVL-VIAPVDGEALASAVEKAADAGIPVIAYD 87 (288)
T ss_pred HHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHc--------CCCEE-EEecCChhhHHHHHHHHHHCCCCEEEEC
Confidence 345567877543 3443 554444444444433 32233 55554433 456777888888877765
No 325
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=20.93 E-value=3.5e+02 Score=21.39 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCCceEEEEeCCCC---HHHHHHHhh---cCCcccEEeecCc
Q 025365 53 PDFEKMSITASNDLN---EETLDALNK---QGHEVDAFGIGTY 89 (254)
Q Consensus 53 ~g~~~vkI~~S~~ld---e~~i~~l~~---~g~~id~fGVGT~ 89 (254)
++....-|++|+|.. +..+.+..+ ....+.+||+|..
T Consensus 94 ~~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~~g~~ 136 (155)
T PF13768_consen 94 PGCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFGIGSD 136 (155)
T ss_pred CCCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEEECCh
Confidence 345555599998883 444444443 2456999999983
No 326
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.93 E-value=2.1e+02 Score=27.44 Aligned_cols=76 Identities=25% Similarity=0.308 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcCCCccEEee-------CCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcC
Q 025365 6 PNFCAVALALNDLGYKAVGIRL-------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRl-------DSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g 78 (254)
..++.+|+.|++.|.++ +|= --.+..-+..+--++|.++..++|++.++. -.|+..+..+.+.
T Consensus 132 ~~~~~~A~~lk~~g~~~--~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~-------v~d~~~~~~l~~~- 201 (360)
T PRK12595 132 EQVEAVAKALKAKGLKL--LRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISE-------IVNPADVEVALDY- 201 (360)
T ss_pred HHHHHHHHHHHHcCCcE--EEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEe-------eCCHHHHHHHHHh-
Confidence 45788999999887542 331 111222233444556666666666654444 4999999999875
Q ss_pred CcccEEeecCccccc
Q 025365 79 HEVDAFGIGTYLVTC 93 (254)
Q Consensus 79 ~~id~fGVGT~l~t~ 93 (254)
+|.|=||+..++.
T Consensus 202 --vd~lkI~s~~~~n 214 (360)
T PRK12595 202 --VDVIQIGARNMQN 214 (360)
T ss_pred --CCeEEECcccccC
Confidence 9999999999985
No 327
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=20.86 E-value=1.8e+02 Score=28.58 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHH
Q 025365 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEET 70 (254)
Q Consensus 10 ~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~ 70 (254)
.++++| +...+ .-+|+-++. +..++.++.. +-+||+.+++||+..
T Consensus 364 ~aar~l-~~~ip-iv~rlqgt~----v~~ak~~i~~----------sgmri~~~deldeaa 408 (434)
T KOG2799|consen 364 LAAREL-ELNIP-IVVRLQGTR----VEAAKPIINT----------SGMRIRSFDELDEAA 408 (434)
T ss_pred hhhhhh-hcCCC-EEEEecCCc----hhhhhhhHhh----------cCceEEechhhhHHh
Confidence 345555 23344 489999998 6777777765 457999999999975
No 328
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=20.70 E-value=3.4e+02 Score=21.97 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceEEEEeCCCC------HHHHHH-HhhcCCcccEEeecCc
Q 025365 56 EKMSITASNDLN------EETLDA-LNKQGHEVDAFGIGTY 89 (254)
Q Consensus 56 ~~vkI~~S~~ld------e~~i~~-l~~~g~~id~fGVGT~ 89 (254)
.++-|++|+|.+ ...+.+ +.+.|..+.++|+|+.
T Consensus 103 ~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~ 143 (180)
T cd01467 103 ERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKS 143 (180)
T ss_pred CCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCC
Confidence 455688898853 223333 4457888999999973
No 329
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=20.48 E-value=5e+02 Score=24.42 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 025365 39 ARKFFRTI 46 (254)
Q Consensus 39 ~r~~ld~~ 46 (254)
+++.|.+.
T Consensus 184 l~~~L~~~ 191 (312)
T cd03522 184 LRARLAAL 191 (312)
T ss_pred HHHHHHHC
Confidence 34444443
No 330
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.44 E-value=3.4e+02 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.3
Q ss_pred CceEEEEeCCCC-HHHHHHHh-hcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLN-EETLDALN-KQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~-~~g~~id~fGVGT~l~t 92 (254)
.++.|++|||+. .+.+.++. +.| +|+.-||+.|--
T Consensus 195 ~~ipvIasGGv~s~eD~~~l~~~~G--vdgVivg~a~~~ 231 (258)
T PRK01033 195 LKIPLIALGGAGSLDDIVEAILNLG--ADAAAAGSLFVF 231 (258)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHCC--CCEEEEcceeee
Confidence 456799998875 57888887 566 777888887743
No 331
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.28 E-value=2.1e+02 Score=27.71 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=41.0
Q ss_pred EEeeCCCChHHH-HHHHHHHHHHHhHhhCCCC-CCceEEEE-eCCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 24 GIRLDSGDLAYL-SCEARKFFRTIEKEFGVPD-FEKMSITA-SNDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 24 gVRlDSGDl~~l-s~~~r~~ld~~g~~l~~~g-~~~vkI~~-S~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
-|=+--|.|..+ ..++.++++.+...+++.. -..+.|-+ -+.++++.+..|.+.|....++||=|.
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~ 162 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSF 162 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 333334666555 3446666666655555432 12233333 356999999999999987777777665
No 332
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.24 E-value=6.6e+02 Score=23.48 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=44.7
Q ss_pred ccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 025365 22 AVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id~fGVGT~ 89 (254)
+.-|-+=-|.|..++ ..+.++++.....+++..-..+.|-+. +.+|++.+..|.+.|....++||=|.
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~ 121 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSF 121 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC
Confidence 455666668887774 456777766654555432234444443 56999999999999977667776543
No 333
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=20.23 E-value=1.2e+02 Score=29.58 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhh
Q 025365 19 GYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK 76 (254)
Q Consensus 19 G~~~~gVRlDSGDl-~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~ 76 (254)
|..+..||+.|||+ ...++-+.+..++. ++.++..+. |.+.+.+..+
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~----------~~PLIL~~~-D~evl~aale 116 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAV----------DVPLILCGC-DPEVLKAALE 116 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-----------SSEEEEESS-HHHHHHHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhc----------CCCEEEEeC-CHHHHHHHHH
Confidence 55677999999997 88887788777653 344444333 6666666655
No 334
>PRK13685 hypothetical protein; Provisional
Probab=20.19 E-value=1.2e+02 Score=28.04 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred ceEEEEeCCCCH------------HHHHHHhhcCCcccEEeecCc
Q 025365 57 KMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 57 ~vkI~~S~~lde------------~~i~~l~~~g~~id~fGVGT~ 89 (254)
++-|++|||.|. ..+..+.+.|.++..+|+||.
T Consensus 195 ~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 195 ARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred CEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCC
Confidence 455999999874 234556678999999999974
No 335
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=20.10 E-value=5e+02 Score=22.03 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=33.1
Q ss_pred Hhh-cCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC--CCHHHHHHHhhcCCcccEEe
Q 025365 15 LND-LGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~-~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~--lde~~i~~l~~~g~~id~fG 85 (254)
+++ .|+.+ -+....+|+......++.++.. +. +.-|+.+.+ .+...+..+.+.|.|+..++
T Consensus 25 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~--------~v-dgiii~~~~~~~~~~~~~~l~~~~iPvv~~~ 88 (272)
T cd06301 25 AKVLGGVEL-QFEDAKNDVATQLSQVENFIAQ--------GV-DAIIVVPVDTAATAPIVKAANAAGIPLVYVN 88 (272)
T ss_pred HHHcCCcEE-EEeCCCCCHHHHHHHHHHHHHc--------CC-CEEEEecCchhhhHHHHHHHHHCCCeEEEec
Confidence 455 56665 2332336776555555554443 22 332555543 23566777878887766553
No 336
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.09 E-value=5e+02 Score=21.38 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=33.1
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHH-HHHHhhcCCcccEEeecC
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEET-LDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~-i~~l~~~g~~id~fGVGT 88 (254)
+++.|+.+. +..+.++.......+++++.. + .+.-|+.+...+... +..+...|.|+..|+...
T Consensus 25 ~~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~--------~-~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 25 AKAAGYQVL-LANSQNDAEKQLSALENLIAR--------G-VDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred HHHcCCeEE-EEeCCCCHHHHHHHHHHHHHc--------C-CCEEEEecCCCcchhHHHHhhhcCCCEEEeccCC
Confidence 455677663 444445654444444554433 3 344244333322222 677777787877776654
No 337
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=20.04 E-value=4.1e+02 Score=27.86 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=24.0
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++|++ +.+.+.+++++|. +|..++|-.++..
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~-~D~v~~gR~~l~d 723 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGR-ADLCALARPHLAD 723 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCC-cceeeEcHHHHhC
Confidence 3567777777 5666777776553 6777777777663
Done!