Query 025365
Match_columns 254
No_of_seqs 172 out of 1194
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f7f_A Nicotinate phosphoribos 100.0 5.5E-58 1.9E-62 445.0 24.0 235 1-246 238-478 (494)
2 3dhf_A Nicotinamide phosphorib 100.0 2.6E-37 8.9E-42 299.0 12.0 162 19-210 305-482 (484)
3 2i14_A Nicotinate-nucleotide p 100.0 1.6E-36 5.5E-41 287.5 15.8 171 3-218 219-394 (395)
4 2i1o_A Nicotinate phosphoribos 100.0 8.9E-36 3E-40 282.6 16.4 169 3-217 222-396 (398)
5 2im5_A Nicotinate phosphoribos 100.0 3E-32 1E-36 258.1 7.5 122 4-136 253-387 (394)
6 1yir_A Naprtase 2, nicotinate 100.0 6.2E-32 2.1E-36 257.0 8.6 121 5-135 268-396 (408)
7 3os4_A Naprtase, nicotinate ph 100.0 3.5E-31 1.2E-35 251.6 8.7 112 4-124 262-378 (407)
8 1ybe_A Naprtase, nicotinate ph 100.0 3.8E-31 1.3E-35 254.2 8.6 109 21-137 307-428 (449)
9 4hl7_A Naprtase, nicotinate ph 100.0 1.6E-30 5.4E-35 249.2 8.7 120 4-133 272-404 (446)
10 1vlp_A Naprtase, nicotinate ph 100.0 2.2E-30 7.4E-35 248.4 4.1 120 4-134 286-420 (441)
11 2jbm_A Nicotinate-nucleotide p 99.2 4.1E-11 1.4E-15 109.5 7.3 81 22-116 218-298 (299)
12 3c2e_A Nicotinate-nucleotide p 98.8 5.1E-09 1.7E-13 95.4 5.3 75 22-107 220-294 (294)
13 3gnn_A Nicotinate-nucleotide p 98.5 2.2E-07 7.6E-12 84.9 8.0 69 22-107 230-298 (298)
14 3paj_A Nicotinate-nucleotide p 98.4 3.4E-07 1.2E-11 84.5 7.7 69 22-107 252-320 (320)
15 2b7n_A Probable nicotinate-nuc 98.4 2.4E-07 8.3E-12 83.4 6.3 70 22-105 203-272 (273)
16 1qap_A Quinolinic acid phospho 98.0 5.8E-06 2E-10 75.4 5.6 67 22-105 229-295 (296)
17 1qpo_A Quinolinate acid phosph 97.4 0.00056 1.9E-08 61.9 9.0 70 22-105 215-284 (284)
18 3tqv_A Nicotinate-nucleotide p 97.2 0.00061 2.1E-08 61.9 6.7 68 22-106 219-286 (287)
19 1o4u_A Type II quinolic acid p 97.1 0.00092 3.1E-08 60.6 7.2 71 22-106 214-284 (285)
20 3l0g_A Nicotinate-nucleotide p 97.1 0.0014 4.7E-08 59.9 8.0 67 22-105 228-294 (300)
21 1x1o_A Nicotinate-nucleotide p 96.3 0.022 7.5E-07 51.5 10.4 46 57-107 240-285 (286)
22 3f4w_A Putative hexulose 6 pho 90.5 0.36 1.2E-05 40.1 5.4 37 56-94 158-194 (211)
23 2yxb_A Coenzyme B12-dependent 90.0 1.3 4.6E-05 35.9 8.4 66 16-90 66-132 (161)
24 3ctl_A D-allulose-6-phosphate 87.9 0.61 2.1E-05 40.4 5.1 50 35-94 153-203 (231)
25 3khj_A Inosine-5-monophosphate 87.7 2.4 8.3E-05 39.0 9.3 48 57-111 207-255 (361)
26 2v82_A 2-dehydro-3-deoxy-6-pho 86.6 0.37 1.3E-05 40.2 2.8 35 57-93 148-182 (212)
27 4fo4_A Inosine 5'-monophosphat 84.6 4 0.00014 37.7 9.1 42 57-100 211-253 (366)
28 3ffs_A Inosine-5-monophosphate 84.5 3.3 0.00011 38.8 8.5 41 57-99 246-287 (400)
29 3hgj_A Chromate reductase; TIM 84.2 5 0.00017 36.4 9.4 75 5-93 238-324 (349)
30 1rpx_A Protein (ribulose-phosp 84.2 1.2 4.1E-05 37.6 4.9 51 35-95 165-215 (230)
31 1tqx_A D-ribulose-5-phosphate 83.5 0.94 3.2E-05 39.2 4.0 36 57-94 173-208 (227)
32 1wa3_A 2-keto-3-deoxy-6-phosph 83.3 0.38 1.3E-05 39.8 1.4 36 55-92 148-183 (205)
33 3l5l_A Xenobiotic reductase A; 82.8 4.3 0.00015 37.1 8.5 75 5-93 245-331 (363)
34 1z41_A YQJM, probable NADH-dep 82.2 5.2 0.00018 36.0 8.7 75 5-93 228-313 (338)
35 1y0e_A Putative N-acetylmannos 82.0 0.9 3.1E-05 37.9 3.3 34 57-92 175-209 (223)
36 1ep3_A Dihydroorotate dehydrog 80.6 2 7E-05 37.5 5.2 35 57-93 241-276 (311)
37 1vc4_A Indole-3-glycerol phosp 80.2 3.1 0.00011 36.3 6.2 66 18-95 173-244 (254)
38 3inp_A D-ribulose-phosphate 3- 80.1 1.6 5.4E-05 38.3 4.2 50 35-94 181-230 (246)
39 1yxy_A Putative N-acetylmannos 79.9 1.1 3.6E-05 37.9 3.0 34 57-92 186-220 (234)
40 3cu2_A Ribulose-5-phosphate 3- 79.7 2 6.9E-05 37.3 4.8 47 37-93 175-223 (237)
41 4af0_A Inosine-5'-monophosphat 79.2 2.2 7.7E-05 41.8 5.3 94 6-108 280-379 (556)
42 1eep_A Inosine 5'-monophosphat 79.1 6 0.0002 36.4 8.1 41 56-98 255-296 (404)
43 2yw3_A 4-hydroxy-2-oxoglutarat 79.0 0.84 2.9E-05 38.6 2.1 36 55-92 149-184 (207)
44 3qja_A IGPS, indole-3-glycerol 79.0 1.5 5.1E-05 38.9 3.8 36 57-94 213-249 (272)
45 1yad_A Regulatory protein TENI 79.0 0.82 2.8E-05 38.3 2.0 36 57-94 164-199 (221)
46 3gr7_A NADPH dehydrogenase; fl 78.7 5.5 0.00019 36.1 7.6 75 5-93 228-313 (340)
47 1h5y_A HISF; histidine biosynt 78.6 2.7 9.1E-05 35.0 5.1 35 57-93 198-233 (253)
48 1tqj_A Ribulose-phosphate 3-ep 77.6 1.9 6.5E-05 36.9 3.9 51 34-94 158-208 (230)
49 3gka_A N-ethylmaleimide reduct 76.6 8.5 0.00029 35.4 8.3 86 8-94 214-323 (361)
50 1geq_A Tryptophan synthase alp 76.4 2.2 7.5E-05 36.2 4.0 35 57-93 191-226 (248)
51 2fli_A Ribulose-phosphate 3-ep 76.4 2.4 8.3E-05 35.1 4.2 36 57-94 170-205 (220)
52 2qr6_A IMP dehydrogenase/GMP r 75.4 7.7 0.00026 35.5 7.7 45 57-103 277-322 (393)
53 2r14_A Morphinone reductase; H 75.4 6.6 0.00023 36.2 7.2 36 57-93 299-334 (377)
54 2gou_A Oxidoreductase, FMN-bin 75.1 9.4 0.00032 34.9 8.2 75 5-93 249-328 (365)
55 1xi3_A Thiamine phosphate pyro 74.9 1.1 3.9E-05 36.8 1.7 36 57-94 162-197 (215)
56 4ab4_A Xenobiotic reductase B; 74.8 10 0.00035 34.8 8.3 86 8-94 206-315 (362)
57 1jcn_A Inosine monophosphate d 74.6 13 0.00045 35.2 9.3 45 57-104 358-403 (514)
58 4avf_A Inosine-5'-monophosphat 74.2 12 0.00043 35.5 9.0 40 57-98 332-372 (490)
59 1vyr_A Pentaerythritol tetrani 74.2 11 0.00036 34.5 8.3 36 57-93 294-329 (364)
60 1mxs_A KDPG aldolase; 2-keto-3 73.3 5.8 0.0002 34.0 5.9 37 54-93 163-200 (225)
61 1vrd_A Inosine-5'-monophosphat 72.8 14 0.0005 34.6 9.1 40 57-98 340-380 (494)
62 3kru_A NADH:flavin oxidoreduct 71.8 16 0.00054 33.2 8.8 73 5-94 229-314 (343)
63 1jub_A Dihydroorotate dehydrog 70.3 9.8 0.00034 33.4 6.9 34 57-92 242-276 (311)
64 2w6r_A Imidazole glycerol phos 70.3 4.9 0.00017 34.3 4.7 35 57-93 200-235 (266)
65 2tps_A Protein (thiamin phosph 69.9 1.3 4.6E-05 36.8 1.0 35 57-93 172-206 (227)
66 2zbt_A Pyridoxal biosynthesis 69.7 3.6 0.00012 36.1 3.8 32 60-93 212-244 (297)
67 1h1y_A D-ribulose-5-phosphate 69.4 1.8 6.2E-05 36.6 1.8 36 57-94 173-208 (228)
68 3ajx_A 3-hexulose-6-phosphate 68.8 2.1 7.2E-05 35.2 2.0 36 57-94 158-193 (207)
69 3igs_A N-acetylmannosamine-6-p 68.2 3 0.0001 35.9 2.9 34 57-92 181-215 (232)
70 3usb_A Inosine-5'-monophosphat 67.9 22 0.00076 34.0 9.2 40 57-98 359-399 (511)
71 3bw2_A 2-nitropropane dioxygen 67.3 3.7 0.00013 37.4 3.5 39 57-97 208-247 (369)
72 3q58_A N-acetylmannosamine-6-p 67.0 3.2 0.00011 35.6 2.9 34 57-92 181-215 (229)
73 3b0p_A TRNA-dihydrouridine syn 66.0 16 0.00055 33.0 7.5 36 56-94 196-232 (350)
74 3ceu_A Thiamine phosphate pyro 65.4 2.1 7E-05 35.9 1.3 37 56-94 143-179 (210)
75 3o63_A Probable thiamine-phosp 64.7 2.1 7E-05 37.3 1.2 37 57-95 191-227 (243)
76 3aty_A Tcoye, prostaglandin F2 64.5 23 0.00079 32.5 8.4 36 57-93 307-342 (379)
77 2qjg_A Putative aldolase MJ040 64.2 22 0.00077 30.3 7.8 36 57-94 202-244 (273)
78 1vzw_A Phosphoribosyl isomeras 63.8 12 0.0004 31.5 5.8 35 57-93 190-228 (244)
79 2e6f_A Dihydroorotate dehydrog 62.6 12 0.00042 32.8 5.9 35 56-92 243-278 (314)
80 4e38_A Keto-hydroxyglutarate-a 62.2 5.1 0.00017 34.8 3.2 37 54-92 171-207 (232)
81 1vhc_A Putative KHG/KDPG aldol 61.7 6.1 0.00021 33.8 3.6 38 54-93 154-191 (224)
82 1me8_A Inosine-5'-monophosphat 61.5 5 0.00017 38.3 3.3 92 6-106 241-339 (503)
83 1wbh_A KHG/KDPG aldolase; lyas 61.0 6.2 0.00021 33.5 3.5 38 54-93 153-190 (214)
84 2hsa_B 12-oxophytodienoate red 60.6 29 0.001 32.1 8.3 51 57-115 319-369 (402)
85 2gjl_A Hypothetical protein PA 60.1 5.7 0.0002 35.4 3.3 38 57-96 172-210 (328)
86 1gox_A (S)-2-hydroxy-acid oxid 59.2 21 0.00072 32.5 7.0 34 57-92 280-314 (370)
87 1rd5_A Tryptophan synthase alp 58.4 12 0.00039 32.1 4.8 35 57-93 201-236 (262)
88 3tsm_A IGPS, indole-3-glycerol 58.1 7.7 0.00026 34.4 3.7 37 57-95 220-257 (272)
89 3jr2_A Hexulose-6-phosphate sy 57.8 4 0.00014 34.3 1.7 35 57-93 166-200 (218)
90 2y88_A Phosphoribosyl isomeras 56.4 11 0.00038 31.5 4.3 35 57-93 193-231 (244)
91 4fxs_A Inosine-5'-monophosphat 56.3 32 0.0011 32.7 8.0 41 57-99 334-375 (496)
92 1ps9_A 2,4-dienoyl-COA reducta 56.2 16 0.00056 35.5 6.1 75 5-93 227-316 (671)
93 3lab_A Putative KDPG (2-keto-3 54.8 8 0.00027 33.3 3.2 37 54-92 156-192 (217)
94 1ccw_A Protein (glutamate muta 54.5 30 0.001 26.9 6.3 65 19-91 54-124 (137)
95 2nv1_A Pyridoxal biosynthesis 53.6 8.7 0.0003 33.9 3.3 33 60-94 212-245 (305)
96 1yya_A Triosephosphate isomera 53.6 17 0.00059 31.9 5.2 55 34-92 184-238 (250)
97 3tdn_A FLR symmetric alpha-bet 53.5 2.8 9.5E-05 35.7 0.0 36 57-94 200-236 (247)
98 2z6i_A Trans-2-enoyl-ACP reduc 53.4 9.4 0.00032 34.1 3.5 38 57-96 162-200 (332)
99 1icp_A OPR1, 12-oxophytodienoa 53.3 13 0.00043 34.2 4.4 36 57-93 301-336 (376)
100 3bo9_A Putative nitroalkan dio 52.9 9 0.00031 34.3 3.3 38 57-96 176-214 (326)
101 3kbq_A Protein TA0487; structu 52.9 33 0.0011 28.2 6.6 50 7-67 24-73 (172)
102 1p0k_A Isopentenyl-diphosphate 52.5 33 0.0011 30.6 7.1 36 56-93 250-286 (349)
103 1f76_A Dihydroorotate dehydrog 51.9 27 0.00092 30.9 6.3 34 57-92 289-323 (336)
104 1ka9_F Imidazole glycerol phos 51.5 40 0.0014 28.1 7.1 75 7-93 32-110 (252)
105 1zfj_A Inosine monophosphate d 51.0 1.2E+02 0.0041 28.1 10.9 40 56-97 335-375 (491)
106 2xij_A Methylmalonyl-COA mutas 50.3 33 0.0011 34.8 7.3 67 17-92 653-720 (762)
107 1qo2_A Molecule: N-((5-phospho 50.2 44 0.0015 27.8 7.1 73 7-94 145-230 (241)
108 1ka9_F Imidazole glycerol phos 49.7 22 0.00074 29.8 5.1 36 57-94 196-232 (252)
109 3l5a_A NADH/flavin oxidoreduct 49.5 33 0.0011 32.0 6.7 73 5-93 263-352 (419)
110 2yc6_A Triosephosphate isomera 48.8 23 0.00078 31.2 5.2 54 34-92 188-242 (257)
111 2c6q_A GMP reductase 2; TIM ba 48.5 1.5E+02 0.0052 26.6 11.1 40 57-98 223-263 (351)
112 1hg3_A Triosephosphate isomera 48.5 25 0.00086 30.2 5.3 37 56-94 175-212 (225)
113 1mzh_A Deoxyribose-phosphate a 48.3 91 0.0031 26.1 8.8 69 7-87 133-204 (225)
114 1to3_A Putative aldolase YIHT; 48.1 40 0.0014 30.0 6.8 70 12-93 183-260 (304)
115 4f8x_A Endo-1,4-beta-xylanase; 47.6 14 0.00046 33.7 3.6 39 54-93 170-219 (335)
116 2xgg_A Microneme protein 2; A/ 47.4 35 0.0012 26.8 5.8 37 54-90 121-163 (178)
117 1w0m_A TIM, triosephosphate is 46.4 31 0.001 29.7 5.5 37 56-94 172-209 (226)
118 1thf_D HISF protein; thermophI 46.0 51 0.0018 27.4 6.9 78 7-93 31-109 (253)
119 4adt_A Pyridoxine biosynthetic 45.8 11 0.00039 33.8 2.8 35 58-94 210-245 (297)
120 3t7v_A Methylornithine synthas 45.5 1.2E+02 0.004 26.7 9.5 72 6-87 94-169 (350)
121 4hqo_A Sporozoite surface prot 43.8 39 0.0013 28.7 5.9 37 54-90 124-166 (266)
122 3rot_A ABC sugar transporter, 43.5 54 0.0019 27.4 6.7 62 15-85 29-93 (297)
123 2btm_A TIM, protein (triosepho 43.5 31 0.0011 30.2 5.2 55 34-92 184-238 (252)
124 3r2g_A Inosine 5'-monophosphat 43.4 24 0.00083 32.4 4.7 89 7-106 100-196 (361)
125 2h6r_A Triosephosphate isomera 43.4 28 0.00096 29.2 4.8 36 57-94 170-206 (219)
126 1aw2_A Triosephosphate isomera 43.1 18 0.00063 31.8 3.6 54 34-92 187-240 (256)
127 4e38_A Keto-hydroxyglutarate-a 42.7 1E+02 0.0036 26.4 8.4 39 5-43 45-83 (232)
128 2nli_A Lactate oxidase; flavoe 41.7 69 0.0024 29.2 7.5 71 9-92 240-318 (368)
129 3ovp_A Ribulose-phosphate 3-ep 41.4 12 0.0004 32.0 2.1 36 57-94 169-204 (228)
130 1thf_D HISF protein; thermophI 41.2 17 0.00059 30.4 3.1 35 57-93 195-230 (253)
131 3vk5_A MOEO5; TIM barrel, tran 40.9 65 0.0022 28.8 6.9 35 57-93 227-262 (286)
132 1vcf_A Isopentenyl-diphosphate 40.5 75 0.0026 28.1 7.4 34 57-92 256-290 (332)
133 3zwt_A Dihydroorotate dehydrog 40.2 85 0.0029 28.6 7.8 34 57-92 298-332 (367)
134 1xm3_A Thiazole biosynthesis p 40.1 31 0.001 29.9 4.6 37 56-94 177-214 (264)
135 2fep_A Catabolite control prot 39.5 97 0.0033 25.7 7.7 62 14-85 41-102 (289)
136 3ibs_A Conserved hypothetical 38.9 57 0.0019 26.0 5.9 36 54-89 110-150 (218)
137 1gte_A Dihydropyrimidine dehyd 38.9 43 0.0015 34.5 6.2 35 56-92 786-821 (1025)
138 4a3u_A NCR, NADH\:flavin oxido 38.7 16 0.00055 33.2 2.7 48 59-114 288-335 (358)
139 1b9b_A TIM, protein (triosepho 38.6 29 0.00097 30.6 4.2 54 35-92 187-240 (255)
140 1vcv_A Probable deoxyribose-ph 38.4 98 0.0034 26.4 7.5 72 5-89 130-220 (226)
141 1n3y_A Integrin alpha-X; alpha 37.8 35 0.0012 26.9 4.3 37 54-90 109-152 (198)
142 3r2g_A Inosine 5'-monophosphat 37.5 66 0.0023 29.5 6.6 39 59-99 201-240 (361)
143 1tv5_A Dhodehase, dihydroorota 37.1 1.3E+02 0.0044 28.3 8.7 34 57-92 373-407 (443)
144 1mkz_A Molybdenum cofactor bio 36.9 76 0.0026 25.5 6.3 51 7-66 29-79 (172)
145 3brq_A HTH-type transcriptiona 36.7 1.3E+02 0.0045 24.5 8.0 60 15-85 47-108 (296)
146 3g1w_A Sugar ABC transporter; 36.2 1.1E+02 0.0037 25.4 7.4 63 14-85 29-93 (305)
147 2j27_A Triosephosphate isomera 36.1 30 0.001 30.3 3.9 55 34-92 185-239 (250)
148 3nl6_A Thiamine biosynthetic b 35.9 26 0.0009 33.9 3.8 40 56-95 172-217 (540)
149 1jgt_A Beta-lactam synthetase; 35.8 33 0.0011 32.7 4.5 58 30-89 217-276 (513)
150 1o5x_A TIM, triosephosphate is 35.7 34 0.0012 29.9 4.2 55 34-92 183-237 (248)
151 1mxs_A KDPG aldolase; 2-keto-3 35.0 1.3E+02 0.0045 25.3 7.8 37 5-41 37-73 (225)
152 1kbi_A Cytochrome B2, L-LCR; f 34.6 71 0.0024 30.5 6.6 75 9-92 354-437 (511)
153 1y5e_A Molybdenum cofactor bio 34.1 65 0.0022 25.8 5.4 38 7-44 32-69 (169)
154 4hqf_A Thrombospondin-related 34.0 68 0.0023 27.2 5.8 35 55-89 128-168 (281)
155 3lab_A Putative KDPG (2-keto-3 33.9 1.9E+02 0.0064 24.6 8.5 63 5-79 24-86 (217)
156 1shu_X Anthrax toxin receptor 33.8 1.2E+02 0.0042 23.1 6.9 35 54-88 102-144 (182)
157 1q15_A CARA; CMPR, (2S,5S)-5-c 33.8 42 0.0014 31.9 4.8 58 30-89 214-273 (503)
158 1h5y_A HISF; histidine biosynt 33.2 1.5E+02 0.0051 24.0 7.7 75 6-92 33-111 (253)
159 3tdn_A FLR symmetric alpha-bet 33.2 44 0.0015 28.0 4.4 72 7-93 36-114 (247)
160 2jgq_A Triosephosphate isomera 32.3 42 0.0014 29.0 4.1 51 34-92 172-222 (233)
161 3exr_A RMPD (hexulose-6-phosph 32.2 30 0.001 29.2 3.2 36 57-94 168-203 (221)
162 1me8_A Inosine-5'-monophosphat 31.7 78 0.0027 29.9 6.3 49 39-97 342-391 (503)
163 1tre_A Triosephosphate isomera 31.3 45 0.0015 29.3 4.2 54 34-92 185-238 (255)
164 2vxn_A Triosephosphate isomera 31.3 46 0.0016 29.1 4.3 55 34-92 186-240 (251)
165 1req_A Methylmalonyl-COA mutas 31.2 93 0.0032 31.4 7.0 67 17-92 645-712 (727)
166 1ijb_A VON willebrand factor; 31.1 44 0.0015 26.8 3.9 36 54-89 114-157 (202)
167 1vzw_A Phosphoribosyl isomeras 30.8 98 0.0033 25.6 6.2 72 7-92 33-109 (244)
168 2pjk_A 178AA long hypothetical 30.5 72 0.0024 26.0 5.1 37 7-43 41-77 (178)
169 2is8_A Molybdopterin biosynthe 30.4 78 0.0027 25.1 5.3 52 7-67 22-73 (164)
170 1qop_A Tryptophan synthase alp 30.4 48 0.0016 28.5 4.3 35 57-93 205-240 (268)
171 2h3h_A Sugar ABC transporter, 29.9 1E+02 0.0036 25.8 6.3 62 15-85 26-89 (313)
172 1r2r_A TIM, triosephosphate is 29.7 43 0.0015 29.3 3.8 55 34-92 183-237 (248)
173 1mo0_A TIM, triosephosphate is 29.6 41 0.0014 29.9 3.7 55 34-92 202-256 (275)
174 1vhn_A Putative flavin oxidore 29.3 46 0.0016 29.3 4.0 35 57-93 183-219 (318)
175 3d8u_A PURR transcriptional re 29.1 1.3E+02 0.0043 24.5 6.5 61 15-85 29-89 (275)
176 2o20_A Catabolite control prot 29.0 1.6E+02 0.0055 24.9 7.4 25 60-84 124-148 (332)
177 3ksm_A ABC-type sugar transpor 28.9 1.3E+02 0.0046 24.2 6.7 63 14-85 25-91 (276)
178 3l6u_A ABC-type sugar transpor 28.8 1.9E+02 0.0065 23.6 7.7 62 14-85 33-96 (293)
179 3e3m_A Transcriptional regulat 28.6 2.2E+02 0.0074 24.4 8.3 25 60-84 131-155 (355)
180 2b2x_A Integrin alpha-1; compu 28.6 48 0.0017 27.0 3.8 36 54-89 123-164 (223)
181 3m9y_A Triosephosphate isomera 28.4 65 0.0022 28.2 4.7 54 35-92 189-242 (254)
182 3brs_A Periplasmic binding pro 27.6 66 0.0023 26.4 4.5 62 15-85 33-97 (289)
183 1w8s_A FBP aldolase, fructose- 27.5 1.5E+02 0.0052 25.4 7.0 35 58-94 197-238 (263)
184 4ef8_A Dihydroorotate dehydrog 27.4 89 0.003 28.4 5.7 48 35-92 263-311 (354)
185 2nzl_A Hydroxyacid oxidase 1; 27.3 1.9E+02 0.0063 26.5 7.9 72 9-92 263-341 (392)
186 8abp_A L-arabinose-binding pro 27.3 94 0.0032 25.7 5.5 60 15-85 28-89 (306)
187 3l49_A ABC sugar (ribose) tran 27.0 1.8E+02 0.0061 23.7 7.2 62 14-85 30-93 (291)
188 1m6j_A TIM, TPI, triosephospha 27.0 50 0.0017 29.0 3.7 54 35-92 193-246 (261)
189 3n2n_F Anthrax toxin receptor 26.9 49 0.0017 25.6 3.4 32 56-87 107-146 (185)
190 2rgy_A Transcriptional regulat 26.8 1.4E+02 0.0049 24.6 6.6 61 14-85 33-97 (290)
191 1q6o_A Humps, 3-keto-L-gulonat 26.6 20 0.0007 29.7 1.1 36 57-94 163-198 (216)
192 1mf7_A Integrin alpha M; cell 26.4 30 0.001 27.4 2.0 37 54-90 105-148 (194)
193 4avf_A Inosine-5'-monophosphat 26.4 1.7E+02 0.0059 27.5 7.7 91 6-107 228-326 (490)
194 1ofd_A Ferredoxin-dependent gl 26.4 1.5E+02 0.0052 32.5 7.9 51 34-93 1082-1134(1520)
195 3kjx_A Transcriptional regulat 26.3 2E+02 0.007 24.4 7.7 62 14-85 93-154 (344)
196 3hcw_A Maltose operon transcri 26.3 1.3E+02 0.0045 24.9 6.3 63 13-85 36-98 (295)
197 3k4h_A Putative transcriptiona 26.0 1.3E+02 0.0044 24.7 6.1 62 14-85 38-99 (292)
198 2i9e_A Triosephosphate isomera 25.9 81 0.0028 27.7 4.9 55 34-92 182-236 (259)
199 2w6r_A Imidazole glycerol phos 25.9 1.1E+02 0.0036 25.7 5.6 70 7-91 31-107 (266)
200 1ea0_A Glutamate synthase [NAD 25.6 1.5E+02 0.0053 32.3 7.7 50 35-93 1048-1099(1479)
201 3jy6_A Transcriptional regulat 25.5 2.2E+02 0.0075 23.1 7.4 62 13-85 31-92 (276)
202 2v5b_A Triosephosphate isomera 25.4 1.2E+02 0.0039 26.4 5.8 54 35-92 180-233 (244)
203 1g8l_A Molybdopterin biosynthe 25.2 2E+02 0.0068 26.6 7.7 68 7-86 205-276 (411)
204 3iwt_A 178AA long hypothetical 25.1 1.3E+02 0.0045 23.9 5.8 8 39-46 45-52 (178)
205 1uta_A FTSN, MSGA, cell divisi 25.1 1E+02 0.0035 21.3 4.5 54 5-65 20-81 (81)
206 1p4c_A L(+)-mandelate dehydrog 25.1 96 0.0033 28.2 5.5 32 59-92 280-312 (380)
207 2y88_A Phosphoribosyl isomeras 24.9 2.7E+02 0.0093 22.7 7.9 72 7-92 32-108 (244)
208 1tjy_A Sugar transport protein 24.8 1.3E+02 0.0046 25.4 6.1 61 15-85 29-92 (316)
209 3iix_A Biotin synthetase, puta 24.7 2.2E+02 0.0074 24.6 7.6 72 5-87 86-159 (348)
210 3vzx_A Heptaprenylglyceryl pho 24.3 2.6E+02 0.0088 23.8 7.8 34 57-93 180-214 (228)
211 3o74_A Fructose transport syst 24.2 1.7E+02 0.0058 23.5 6.4 13 104-116 210-222 (272)
212 3niy_A Endo-1,4-beta-xylanase; 24.2 2.1E+02 0.007 25.8 7.4 37 56-93 184-231 (341)
213 3qst_A Triosephosphate isomera 24.1 61 0.0021 28.4 3.7 54 35-92 188-241 (255)
214 1v7p_C Integrin alpha-2; snake 24.0 58 0.002 25.9 3.4 35 54-88 107-147 (200)
215 3krs_A Triosephosphate isomera 23.7 53 0.0018 29.1 3.3 54 35-92 207-260 (271)
216 2vk2_A YTFQ, ABC transporter p 23.1 2.6E+02 0.0089 23.1 7.6 63 13-85 26-90 (306)
217 1ypf_A GMP reductase; GUAC, pu 23.1 73 0.0025 28.4 4.2 40 57-98 210-250 (336)
218 3sgz_A Hydroxyacid oxidase 2; 22.9 2.1E+02 0.0072 26.0 7.3 35 56-92 271-306 (352)
219 1wa3_A 2-keto-3-deoxy-6-phosph 22.9 2.9E+02 0.0098 21.9 9.0 66 4-80 20-85 (205)
220 3m9w_A D-xylose-binding peripl 22.9 3.1E+02 0.011 22.6 8.0 63 13-85 26-90 (313)
221 1pt6_A Integrin alpha-1; cell 22.6 64 0.0022 25.9 3.4 36 54-89 108-149 (213)
222 4g1k_A Triosephosphate isomera 22.3 1.1E+02 0.0036 27.2 5.0 50 34-91 210-259 (272)
223 1dbq_A Purine repressor; trans 22.1 3.1E+02 0.011 22.1 8.3 61 15-85 33-94 (289)
224 1ney_A TIM, triosephosphate is 22.0 44 0.0015 29.2 2.4 55 34-92 182-236 (247)
225 3h5o_A Transcriptional regulat 21.9 2.3E+02 0.0079 24.0 7.1 25 60-84 123-147 (339)
226 3o74_A Fructose transport syst 21.9 1.8E+02 0.0062 23.4 6.1 62 14-85 27-89 (272)
227 4fo4_A Inosine 5'-monophosphat 21.9 1.8E+02 0.0063 26.4 6.7 66 9-85 110-177 (366)
228 1vrd_A Inosine-5'-monophosphat 21.8 2E+02 0.0068 26.7 7.1 66 6-80 236-301 (494)
229 3rfq_A Pterin-4-alpha-carbinol 21.8 1.5E+02 0.0053 24.3 5.6 13 10-22 53-65 (185)
230 4a29_A Engineered retro-aldol 21.7 93 0.0032 27.4 4.4 37 56-94 204-240 (258)
231 3huu_A Transcription regulator 21.6 1.5E+02 0.005 24.7 5.7 26 60-85 88-113 (305)
232 2g2c_A Putative molybdenum cof 21.5 1.2E+02 0.004 24.1 4.7 51 7-67 26-80 (167)
233 3o6p_A Peptide ABC transporter 21.3 75 0.0026 25.7 3.6 39 36-75 80-118 (229)
234 1i4n_A Indole-3-glycerol phosp 21.3 41 0.0014 29.3 2.1 35 57-94 202-237 (251)
235 3egc_A Putative ribose operon 21.1 1.8E+02 0.0061 23.8 6.1 62 14-85 33-94 (291)
236 2uva_G Fatty acid synthase bet 20.9 3E+02 0.01 31.1 9.2 84 3-97 700-805 (2060)
237 3pzy_A MOG; ssgcid, seattle st 20.8 1.4E+02 0.0048 23.8 5.1 13 9-21 30-42 (164)
238 3l4e_A Uncharacterized peptida 20.8 1.7E+02 0.0058 24.2 5.7 71 7-92 45-127 (206)
239 4gj1_A 1-(5-phosphoribosyl)-5- 20.8 3.5E+02 0.012 22.7 7.9 35 57-93 75-110 (243)
240 3tb6_A Arabinose metabolism tr 20.6 3.4E+02 0.011 21.9 7.7 20 66-85 87-106 (298)
241 3bil_A Probable LACI-family tr 20.5 2.6E+02 0.0091 23.9 7.3 25 60-84 127-151 (348)
242 2ioy_A Periplasmic sugar-bindi 20.4 2.5E+02 0.0084 23.0 6.8 61 15-85 27-89 (283)
243 3nvt_A 3-deoxy-D-arabino-heptu 20.4 81 0.0028 29.1 4.0 77 5-93 155-238 (385)
244 2fn9_A Ribose ABC transporter, 20.3 2.9E+02 0.0098 22.5 7.2 61 14-85 27-90 (290)
245 3e61_A Putative transcriptiona 20.2 1.9E+02 0.0066 23.4 6.0 60 14-85 33-93 (277)
246 3gv0_A Transcriptional regulat 20.1 1.2E+02 0.0042 25.0 4.8 62 14-85 35-96 (288)
No 1
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=5.5e-58 Score=444.95 Aligned_cols=235 Identities=35% Similarity=0.520 Sum_probs=222.5
Q ss_pred CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 1 l~sGv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
++|||++|+++|++|.+. ..+.|||+|||||.++++++|++||++ |+++++|++|||||++.|.+|.++|++
T Consensus 238 l~~gv~~al~~~~~l~~~-~~~~gIRlDSgd~~~l~~~~r~~ld~~-------G~~~~kI~aSggld~~~i~~l~~~G~~ 309 (494)
T 2f7f_A 238 LKAGVPSAIRVAREMGDK-INFLGVRIDSGDMAYISKRVREQLDEA-------GFTEAKIYASNDLDENTILNLKMQKSK 309 (494)
T ss_dssp TTTHHHHHHHHHHHHGGG-SEEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTCEEEECSSCCHHHHHHHHHTTCC
T ss_pred hhhhHHHHHHHHHHhhhh-cCCeEEEcCCCCHHHHHHHHHHHHHhC-------CCCceEEEEECCCCHHHHHHHHHcCCC
Confidence 358999999999998654 568899999999999999999999998 888999999999999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEE---cCc--cccccCCCCCccCCCcccceeeecC-CCCceeEEEEecCCCCCC
Q 025365 81 VDAFGIGTYLVTCYAQAALGCVFKLVEI---NKQ--PRIKLSEDVSKVSIPCKKRSYRLYG-KEGYPLVDIMTGENEPPP 154 (254)
Q Consensus 81 id~fGVGT~l~t~~~~p~l~~vyKlv~~---~g~--p~~K~S~~~~K~t~PG~K~vyR~~d-~~g~~~~D~i~l~~e~~~ 154 (254)
+|+|||||+|+++.++|++|+|||||++ ||+ |++|+|++++|.|.||+|+|||+|+ ++|++..|+|++.+|+++
T Consensus 310 ~~sfGvGT~Lt~~~~~~~ld~v~Klv~~~~~~G~~~pv~K~s~~~~K~s~pG~k~v~R~~~~~~g~~~~d~i~~~~e~~~ 389 (494)
T 2f7f_A 310 IDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPR 389 (494)
T ss_dssp CCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCEEEEEEEETTCCGG
T ss_pred EEEEecCcccccCCCCCcccEEEEEEEEEcCCCcCccccccCCCCCCcCCCCceEEEEEeecCCCeEEEEEEEecCCCCc
Confidence 9999999999999999999999999999 998 9999999999999999999999998 579999999999998643
Q ss_pred CCCCceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCcccccccCH
Q 025365 155 KVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSA 234 (254)
Q Consensus 155 ~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~~~rl~~p~~Y~V~~S~ 234 (254)
.++.+.|+||+++|+++.++++..++||+||| +||+++++.|||++||+|++++|++||++++|+.||++|+|++|+
T Consensus 390 -~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~r~~~p~~y~v~~s~ 466 (494)
T 2f7f_A 390 -QEEEIYMFHPVHTFINKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLST 466 (494)
T ss_dssp -GCSEEEEECSSSTTSEEEEESEEEEECCEEEE--ETTEECCCCCCHHHHHHHHHHHHHHSCHHHHCSSSCCCCCEEECH
T ss_pred -cccceeeeCcchhhhhccccCccchhhhhhhh--cCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcCCccccCH
Confidence 45678999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 025365 235 KLYDFIHFLWLN 246 (254)
Q Consensus 235 ~L~~l~~~L~~~ 246 (254)
+|++++++||.+
T Consensus 467 ~l~~~~~~~~~~ 478 (494)
T 2f7f_A 467 DCWNHKMNLLEK 478 (494)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 2
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=100.00 E-value=2.6e-37 Score=298.99 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=138.5
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC---C-ceEEEEeCCCCHHH----HHHHhhcCCcccE--Eeec
Q 025365 19 GYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF---E-KMSITASNDLNEET----LDALNKQGHEVDA--FGIG 87 (254)
Q Consensus 19 G~~~~gVRlDSGDl~~ls~~~r~~ld~~-g~~l~~~g~---~-~vkI~~S~~lde~~----i~~l~~~g~~id~--fGVG 87 (254)
+.++ |||+|||||.++++++|++||+. |...|..|| + +++||+||||||++ |..|.++|+++|. ||||
T Consensus 305 ~~~l-gVR~DSGD~~~~~~~vr~~Ld~~fG~~~n~~G~kvl~~~~~Ii~Sd~Lde~~~~~ii~~l~~~G~~~d~v~fGvG 383 (484)
T 3dhf_A 305 QAPL-IIRPDSGNPLDTVLKVLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEGMKQKMWSIENIAFGSG 383 (484)
T ss_dssp TSCE-EEECCSSCHHHHHHHHHHHHHHHSCCEECTTSCEECCTTEEEEECSSCSHHHHHHHHHHHHHTTBCGGGEEEEES
T ss_pred CCcE-EEECCCCChHHHHHHHHHHHHHHhCCcccccccccCCCCEEEEEcCCCCHHHHHHHHHHHHhCCCCcccceEccc
Confidence 4445 99999999999999999999996 666666899 8 89999999999999 7888889999988 9999
Q ss_pred CcccccCCCCccceEEE--EeEEcC--ccccccC-CCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCCCceee
Q 025365 88 TYLVTCYAQAALGCVFK--LVEINK--QPRIKLS-EDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILC 162 (254)
Q Consensus 88 T~l~t~~~~p~l~~vyK--lv~~~g--~p~~K~S-~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~~~~~~ 162 (254)
|+|+|+.++|+++|||| +|++|| +|++|+| +|.+|.|.||+|+|||. .+| |++++.+|..+. .
T Consensus 384 T~L~~~~~~~~l~~v~K~~~v~~~G~~~pv~K~s~td~~K~S~pG~k~v~r~--~~g----~~~~~~~~~~~~-~----- 451 (484)
T 3dhf_A 384 GGLLQKLTRDLLNCSFKCSYVVTNGLGINVFKDPVADPNKRSKKGRLSLHRT--PAG----NFVTLEEGKGDL-E----- 451 (484)
T ss_dssp HHHHTSCCTTTTTEEEEEEEEEETTEEEECCCCCTTCGGGCCCCSSCEEEEC--TTS----CEEEECTTGGGG-C-----
T ss_pred CccccCCCCCCCCEEEEEEEEEECCccceeeecCCCCCCccCCCcceEEEEe--CCC----cEEEecCCCCCc-c-----
Confidence 99999999999999999 778899 7999999 57899999999999996 234 677887753211 0
Q ss_pred cCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHH
Q 025365 163 RHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIK 210 (254)
Q Consensus 163 ~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~ 210 (254)
. ..++||+||| +||+++. .||+++||+|++.
T Consensus 452 -------------~-~~~~lL~~v~--~~G~~~~-~~~l~eiR~~~~~ 482 (484)
T 3dhf_A 452 -------------E-YGQDLLHTVF--KNGKVTK-SYSFDEIRKNAQL 482 (484)
T ss_dssp -------------S-SCCCSCEEEE--ETTEECC-CCCHHHHHHHTCC
T ss_pred -------------c-cccccchhhe--ECCEEcC-CCCHHHHHHHHhh
Confidence 0 1368999999 8999994 5899999999753
No 3
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=1.6e-36 Score=287.46 Aligned_cols=171 Identities=25% Similarity=0.381 Sum_probs=151.9
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhc
Q 025365 3 SGVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (254)
Q Consensus 3 sGv~nai~va~~l~~~G~~~~gVRlDS-----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~ 77 (254)
.++++|+++|++| |..+.|||+|| ||+.++++++|++||++ |+++++|++|||||++.|.+|.++
T Consensus 219 ~~~~~al~~~~~~---~~~~d~IrlDs~~~~~gd~~~~v~~~r~~ld~~-------G~~~~~I~aSggl~~~~i~~l~~~ 288 (395)
T 2i14_A 219 DEKVEAVMAAEAL---GKKLFAVRLDTPSSRRGNFRKIIEEVRWELKVR-------GYDWVKIFVSGGLDEEKIKEIVDV 288 (395)
T ss_dssp CHHHHHHHHHTTT---GGGCCEEEECCCTTTCSCHHHHHHHHHHHHHHT-------TCCSCEEEEESSCCHHHHHTTGGG
T ss_pred HHHHHHHHHHHHh---ccCCcEEEeCCCCCCcccHHHHHHHHHHHHHhC-------CCCceEEEEECCCCHHHHHHHHHh
Confidence 4689999999765 45688999999 99999999999999998 888999999999999999999988
Q ss_pred CCcccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEEEecCCCCCCCCC
Q 025365 78 GHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVG 157 (254)
Q Consensus 78 g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~i~l~~e~~~~~~ 157 (254)
+|+|||||.+.+ +|++|+|||||++||+|++|+| ++||+|+|||+|+ | .|+|++.+|+++..
T Consensus 289 ---vD~~gvGt~l~~---~~~ld~~~klv~~~g~p~~K~s------~~pG~k~~~R~~~--~---~d~~~~~~e~~~~~- 350 (395)
T 2i14_A 289 ---VDAFGVGGAIAS---AKPVDFALDIVEVEGKPIAKRG------KLSGRKQVYRCEN--G---HYHVVPANKKLERC- 350 (395)
T ss_dssp ---CSEEEECHHHHT---CCCCCCEEEEEEETTEECCCTT------SCCSCEEEEEETT--S---CEEEEETTSCCCBC-
T ss_pred ---CCEEEeCcccCC---CCCccEEEEEEEeCCcceeeec------CCCCceEEEEEcC--C---ceEEEeCCCCCccc-
Confidence 999999999985 8999999999999999999998 6899999999996 3 49999999863310
Q ss_pred CceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChh
Q 025365 158 ERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPD 218 (254)
Q Consensus 158 ~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~~ 218 (254)
| ..+..+++||+||| ++|+++++.||+++||+|++++|++||++
T Consensus 351 -------~--------~~~~~~~~ll~~~~--~~G~~~~~~~~l~~~r~~~~~~l~~l~~~ 394 (395)
T 2i14_A 351 -------P--------VCNAKVEPLLKPII--ENGEIVVEFPKAREIREYVLEQAKKFNLE 394 (395)
T ss_dssp -------S--------SSCCBEEECCEEEE--BTTBCCCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred -------c--------cccccccchhhhhh--cCCEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 0 11234689999999 99999999999999999999999999876
No 4
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=100.00 E-value=8.9e-36 Score=282.63 Aligned_cols=169 Identities=26% Similarity=0.359 Sum_probs=149.5
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhc
Q 025365 3 SGVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (254)
Q Consensus 3 sGv~nai~va~~l~~~G~~~~gVRlDS-----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~ 77 (254)
.++++|+++|++| ..+.|||+|| ||+.++++++|++||++ |+++++|++|||||++.|.+|.++
T Consensus 222 ~~~~~al~~a~~l----~~~d~IrlDs~~~~~gd~~~~v~~v~~~ld~~-------G~~~~~I~aSggl~~~~i~~l~~~ 290 (398)
T 2i1o_A 222 DEKFAAIKIAEMF----DKVDYIRLDTPSSRRGNFEALIREVRWELALR-------GRSDIKIMVSGGLDENTVKKLREA 290 (398)
T ss_dssp CHHHHHHHHHTTC----SCCCEEEECCCGGGCSCHHHHHHHHHHHHHHT-------TCTTSEEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh----cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhC-------CCCceEEEEeCCCCHHHHHHHHHc
Confidence 4699999999876 3588999999 99999999999999998 888899999999999999999999
Q ss_pred CCcccEEeecCcccccCCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCCCCceeEEE-EecCCCCCCCC
Q 025365 78 GHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDI-MTGENEPPPKV 156 (254)
Q Consensus 78 g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~~g~~~~D~-i~l~~e~~~~~ 156 (254)
|+ |+|||||.+.+ +|++|+||||+++||+|++|+| ++||+|+|||+|+ | .|+ |++.+|+++.+
T Consensus 291 Gv--D~~gvGt~l~~---~~~ld~~~Klv~~~g~p~~K~s------~~pG~k~~~r~~~--~---~d~~~~~~~~~~~~~ 354 (398)
T 2i1o_A 291 GA--EAFGVGTSISS---AKPFDFAMDIVEVNGKPETKRG------KMSGRKNVLRCTS--C---HRIEVVPANVQEKTC 354 (398)
T ss_dssp TC--CEEEECHHHHT---CCCCCEEEEEEEETTEECCCTT------SCCSCEEEEEETT--T---CCEEEEETTCCEECC
T ss_pred CC--CEEEeCcccCC---CCCccEEEEEEEeCCcceEeec------CCCCceEEEEEcC--C---CeEEEEecCCCCccc
Confidence 95 99999999985 8999999999999999999998 6899999999986 3 388 99998753210
Q ss_pred CCceeecCCCCccccccccccccccceeeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCCh
Q 025365 157 GERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRP 217 (254)
Q Consensus 157 ~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~psl~eir~~~~~~l~~L~~ 217 (254)
..|..+++||+||| ++|+++++.||+++||+|++++|++||.
T Consensus 355 -----------------~~~~~~~~ll~~~~--~~G~~~~~~~~l~~~r~~~~~~l~~l~~ 396 (398)
T 2i1o_A 355 -----------------ICGGSMQNLLVKYL--SHGKRTSEYPRPKEIRSRSMKELEYFKD 396 (398)
T ss_dssp -----------------SSSSCEEECCEEEE--ETTEESSCCCCHHHHHHHHHHHGGGGC-
T ss_pred -----------------ccCccccchhhhhe--eCCEEcCCCCCHHHHHHHHHHHHHhCcC
Confidence 11224689999999 8999999999999999999999999964
No 5
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=99.97 E-value=3e-32 Score=258.11 Aligned_cols=122 Identities=21% Similarity=0.198 Sum_probs=110.5
Q ss_pred chHHHHHHH-HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCc-eE-EEEeCCCCHHHHHHHhh--cC
Q 025365 4 GVPNFCAVA-LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEK-MS-ITASNDLNEETLDALNK--QG 78 (254)
Q Consensus 4 Gv~nai~va-~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~-vk-I~~S~~lde~~i~~l~~--~g 78 (254)
+..+|++.+ +++ +..+.|||+|||||.++++++|++||++ |+++ +| ||+||||||++|.+|.+ +|
T Consensus 253 d~~~fl~~~~~~~---~~~~~gVR~DSGD~~~~~~~~r~~ld~~-------G~~~~~k~Ii~SdgLd~~~i~~l~~~~~g 322 (394)
T 2im5_A 253 TTDVFMRNFSKKH---AMLFTSLRHDSGDPEIFIEKAVRRYEEL-------RVDPKIKYIIFSDSLTPQRAIEIQKLCAG 322 (394)
T ss_dssp CHHHHHHHCCHHH---HHHCCEEEECSSCHHHHHHHHHHHHHHT-------TCCGGGCEEEECSSCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh---hhcceEEEcCCCCHHHHHHHHHHHHHHc-------CcCcCccEEEEcCCCCHHHHHHHHHHhcC
Confidence 455666643 333 3457899999999999999999999998 8877 99 99999999999999999 89
Q ss_pred CcccEEeecCcccccCC--CCccceEEEEeEEc------CccccccCCCCCccCCCcccceeeecC
Q 025365 79 HEVDAFGIGTYLVTCYA--QAALGCVFKLVEIN------KQPRIKLSEDVSKVSIPCKKRSYRLYG 136 (254)
Q Consensus 79 ~~id~fGVGT~l~t~~~--~p~l~~vyKlv~~~------g~p~~K~S~~~~K~t~PG~K~vyR~~d 136 (254)
+++|+|||||+|+|+.+ +|+++||||||++| |+|++|+|++++|.|.| .|+|||+..
T Consensus 323 ~~~d~FGvGT~L~~~~~~~~~~l~~V~Klv~~~~~~~~~g~p~~KlS~~~~K~t~p-~k~v~r~~~ 387 (394)
T 2im5_A 323 RIKASFGIGTNLTNDVGGGVEPLNIVMKLWKCKMTAKDDWHYCVKLSDVDGKHTGE-PEEILLAMN 387 (394)
T ss_dssp TSEEEEEECHHHHSCCSTTCCCCCEEEEEEEEESSTTSCCEECCBCCSSTTCCBSC-HHHHHHHHH
T ss_pred CCceEEEeCcccccCCCCCCCccceEeeeeeecccccCCCCceEEecCCCCCccCC-HHHHHHHHH
Confidence 99999999999999988 99999999999998 99999999999999999 999999864
No 6
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=99.97 E-value=6.2e-32 Score=256.97 Aligned_cols=121 Identities=21% Similarity=0.236 Sum_probs=104.1
Q ss_pred hHHHHHH-HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCc-e-EEEEeCCCCHHHHHHHhh--cCC
Q 025365 5 VPNFCAV-ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEK-M-SITASNDLNEETLDALNK--QGH 79 (254)
Q Consensus 5 v~nai~v-a~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~-v-kI~~S~~lde~~i~~l~~--~g~ 79 (254)
+.+|++- .+++ +..+.|||+|||||.++++++|++||++ |+++ + +||+||||||++|.+|.+ +|+
T Consensus 268 ~~~fl~~~~~~~---~~~~~GVR~DSGD~~~~~~~~r~~ld~~-------G~~~~~K~Iv~SdgLde~~i~~l~~~~~~~ 337 (408)
T 1yir_A 268 TDAFLRDFDLYF---AKLFDGLRHDSGDPLLWAEKTIAHYLKL-------GIDPLTKTLVFSDGLDLPRALKIYRALQGR 337 (408)
T ss_dssp HHHHHHHCCHHH---HHHCCEEEECSSCHHHHHHHHHHHHHHH-------TCCGGGSEEEECSSCCHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHh---hhcceEEEeCCCCHHHHHHHHHHHHHHc-------CCCCCceEEEECCCCCHHHHHHHHHHhcCC
Confidence 4455552 2333 3457899999999999999999999998 8876 8 699999999999999999 899
Q ss_pred cccEEeecCcccccC-CCCccceEEEEeEEcCccccccCCCCCccC--CCcccceeeec
Q 025365 80 EVDAFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVS--IPCKKRSYRLY 135 (254)
Q Consensus 80 ~id~fGVGT~l~t~~-~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t--~PG~K~vyR~~ 135 (254)
++|+|||||+|+|+. ++|+++||||||++||+|++|+|++++|.| .||.|++||.+
T Consensus 338 ~~d~FGVGT~L~~~~~~~~~l~~V~Klv~~nG~pv~K~S~~~~K~t~~~pg~~~~~r~~ 396 (408)
T 1yir_A 338 INVSFGIGTHFTCDLPGVEPMNIVVKMSACNGHPVAKISDTPGKAQCRDPDFIHYLKHV 396 (408)
T ss_dssp SEEEEEECHHHHSCCTTCCCCCEEEEEEEETTEECCCCCSCC-------CHHHHHHHHH
T ss_pred CceEEEeChhhccCCCCCCccceEEEEEEECCeeeEecCCCCCCcCCCCccceeeEeee
Confidence 999999999999998 899999999999999999999999999999 99999999975
No 7
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=99.97 E-value=3.5e-31 Score=251.57 Aligned_cols=112 Identities=28% Similarity=0.292 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCC--ceEEEEeCCCCHHHHHHHhh--cCC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFE--KMSITASNDLNEETLDALNK--QGH 79 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~--~vkI~~S~~lde~~i~~l~~--~g~ 79 (254)
|++|||+++.+ +.|.++.|||+|||||.++++++|++||++ |++ +++|++||||||++|.+|.+ +|+
T Consensus 262 ~~~~~l~~~~~--~~~~~~~GVR~DSGD~~~~~~k~r~~ld~~-------G~~p~~~~Ii~SdgLde~~i~~l~~~~~~~ 332 (407)
T 3os4_A 262 TMDAFLRDFDL--AFANRYQGLRHDSGDPIEWGEKAIAHYEKL-------GIDPMKKVLVFSDNLDLEKALFLYRHFYQR 332 (407)
T ss_dssp CHHHHHHHCCH--HHHHHSCEEEECSSCHHHHHHHHHHHHHHT-------TCCGGGSEEEECSSCCHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHH--HhcccCeEEEcCCCChHHHHHHHHHHHHHC-------CcCcCceEEEECCCCCHHHHHHHHHHhcCC
Confidence 68999999842 224567899999999999999999999998 886 68899999999999999987 899
Q ss_pred cccEEeecCcccccCC-CCccceEEEEeEEcCccccccCCCCCccC
Q 025365 80 EVDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (254)
Q Consensus 80 ~id~fGVGT~l~t~~~-~p~l~~vyKlv~~~g~p~~K~S~~~~K~t 124 (254)
++|+|||||+|+|+.+ +|+++||||||++||+|++|+|+++||.|
T Consensus 333 ~~d~fGVGT~L~~~~~~~~~l~~V~Klv~~~G~P~~KlSd~~~K~~ 378 (407)
T 3os4_A 333 IKLVFGIGTRLTCDIPDVKPLNIVIKLVECNDKPVAKLSDSPGKTI 378 (407)
T ss_dssp SEEEEEECHHHHSCCTTCCCCCEEEEEEEETTEECCCCCSSTTCCC
T ss_pred CCcEEeechheeeCCCCCCCcceEEEEEEECCcceeEecCCCcccc
Confidence 9999999999999988 99999999999999999999999999997
No 8
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=99.97 E-value=3.8e-31 Score=254.21 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=102.3
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCC--ceEEEEeCCCCHHHHHHHhh--cCCcccEEeecCccccc---
Q 025365 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFE--KMSITASNDLNEETLDALNK--QGHEVDAFGIGTYLVTC--- 93 (254)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~--~vkI~~S~~lde~~i~~l~~--~g~~id~fGVGT~l~t~--- 93 (254)
++.|||+|||||.++++++|++||++ |++ +++||+||||||++|.+|.+ +|+++|+|||||+|+|+
T Consensus 307 ~~~GVR~DSGDp~~~~~~~r~~ld~~-------G~~p~~~~Ii~SdgLd~~~i~~l~~~~~g~~~d~FGVGT~L~~d~~~ 379 (449)
T 1ybe_A 307 DWTGFRPDSAPPIEGGEKIIEWWRKM-------GRDPRTKMLIFSDGLDVDAIVDTYRHFEGRVRMSFGWGTNLTNDFAG 379 (449)
T ss_dssp GSSEECCCSSCHHHHHHHHHHHHHHT-------TCCGGGSEEEECTTCCHHHHHHHHHHHTTTSEEEEEECHHHHCCCTT
T ss_pred ccceEecCCCCHHHHHHHHHHHHHHc-------CCCcCceEEEEeCCCCHHHHHHHHHHhcCCCceEEEeChhhccCccc
Confidence 47899999999999999999999998 886 89999999999999999999 99999999999999994
Q ss_pred ------CCCCccceEEEEeEEcCccccccCCCCCccCCCcccceeeecCC
Q 025365 94 ------YAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK 137 (254)
Q Consensus 94 ------~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~~d~ 137 (254)
.++|+++||||||++||+|++|+|++++|.| ||+|+|||++..
T Consensus 380 ~~~~~~~~~~~l~~V~Klv~~nG~pv~K~S~~~~K~t-~g~k~v~r~~~~ 428 (449)
T 1ybe_A 380 CAPKTIASLKPISIVCKVSDANGRPAVKLSDNPQKAT-GDPAEVERYLKF 428 (449)
T ss_dssp CCC-----CCCCCEEEEEEEETTEECCBCCSSGGGCB-SCHHHHHHHHHH
T ss_pred ccccccCCCCccceEEEEeeecCcceeecCCCCCCCC-CCHHHHHHHHhh
Confidence 4689999999999999999999999999999 999999999753
No 9
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=99.96 E-value=1.6e-30 Score=249.19 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCC-ceE-EEEeCCCCHHHHHHHhh--cCC
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFE-KMS-ITASNDLNEETLDALNK--QGH 79 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~-~vk-I~~S~~lde~~i~~l~~--~g~ 79 (254)
|++||++++.+ ..|.++.|||+|||||.++++++|++||++ |++ ++| ||+||||||++|.+|.+ +|+
T Consensus 272 ~~~~fl~~~~~--~~~~~~~GVR~DSGDp~~~~~k~r~~ld~~-------G~~~~~K~Iv~SdgLde~~i~~L~~~~~~~ 342 (446)
T 4hl7_A 272 TIDAFLNDFNR--HLANAYDGVRHDSGCPFRWGDKMIAHYQQL-------GIDPTTKLFIFSDGLDFDQALELCEYFAGR 342 (446)
T ss_dssp CHHHHHHHCCH--HHHHHSCEEEECSSCHHHHHHHHHHHHHHT-------TCCGGGSEEEECSSCCHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHH--HhcccccEEecCCCChHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHhcCC
Confidence 67899998732 335668899999999999999999999998 885 785 99999999999999976 899
Q ss_pred cccEEeecCcccccCC---------CCccceEEEEeEEcCccccccCCCCCccCCCcccceee
Q 025365 80 EVDAFGIGTYLVTCYA---------QAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYR 133 (254)
Q Consensus 80 ~id~fGVGT~l~t~~~---------~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR 133 (254)
++|+|||||+|+|+.+ +|++++|||||++||+|++|+|+++||.|. |.+...|
T Consensus 343 ~~d~FGVGT~L~~~~~~~~~~~~~~~~~l~~VyKLve~~G~P~~KlSd~~gK~t~-~d~~~~~ 404 (446)
T 4hl7_A 343 VKISFGIGTFLTNDLANWRNAAGVEYRPLSIVIKLAECQGRPVAKISDQPEKAMC-EDPIFLA 404 (446)
T ss_dssp SEEEEEECHHHHSCCTTCBCTTCCBCCCCEEEEEEEEETTEECCBCCSSGGGCBC-SCHHHHH
T ss_pred CCcEEEeccceeccCcccccccccCCCCceeEEEEEEECCcceeEecCCcccccC-CCHHHHH
Confidence 9999999999999987 899999999999999999999999999994 3343333
No 10
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=99.96 E-value=2.2e-30 Score=248.44 Aligned_cols=120 Identities=27% Similarity=0.364 Sum_probs=105.8
Q ss_pred chHHHHHHH-HHHhhcCCCccEEeeCCCChHHHHHHHHHHH-HHHhHhhCCCCCCc-eE-EEEeCCCCHHHHHHHh---h
Q 025365 4 GVPNFCAVA-LALNDLGYKAVGIRLDSGDLAYLSCEARKFF-RTIEKEFGVPDFEK-MS-ITASNDLNEETLDALN---K 76 (254)
Q Consensus 4 Gv~nai~va-~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~l-d~~g~~l~~~g~~~-vk-I~~S~~lde~~i~~l~---~ 76 (254)
|..+|++.+ ++| +.++.|||+|||||.++++++|++| |++ |+++ +| ||+||||||++|.+|. +
T Consensus 286 d~~~fL~~~~~~l---~~~~~GVR~DSGDp~~~~~~~r~~l~d~~-------G~~~~~k~Ii~SdgLd~~~i~~l~~~~~ 355 (441)
T 1vlp_A 286 GTDDFLKSFRPPY---SDAYVGVRQDSGDPVEYTKKISHHYHDVL-------KLPKFSKIICYSDSLNVEKAITYSHAAK 355 (441)
T ss_dssp CHHHHHTTCCTTH---HHHSCEEEECSSCHHHHHHHHHHHHHTTS-------CCCTTSSEEEECSSCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh---hhcceEEEcCCCCHHHHHHHHHHHHHHHc-------CCCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 455666655 333 3557899999999999999999999 887 8877 89 9999999999999999 6
Q ss_pred cCCcccEEeecCcccccC--------CCCccceEEEEeEEcCccccccCCCCCccCCCcccceeee
Q 025365 77 QGHEVDAFGIGTYLVTCY--------AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRL 134 (254)
Q Consensus 77 ~g~~id~fGVGT~l~t~~--------~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~vyR~ 134 (254)
+|+++|+|||||+|+|+. ++|+++||||||++||+|++|+|+++||.|.| .+.|.|+
T Consensus 356 ~~~~~d~FGVGT~L~~~~~~~~~~~~~~~~l~~V~Klv~~nG~p~~KlS~~~~K~t~~-~~~~~~~ 420 (441)
T 1vlp_A 356 ENGMLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLEVNGNHAIKISDNLGKNMGD-PATVKRV 420 (441)
T ss_dssp HTTCEEEEEECHHHHSCEECSSSTTSEECCCCEEEEEEEETTEECCBCCSSTTCCBSC-HHHHHHH
T ss_pred cCCceEEEEeCchheecccccccccCCCCCcceEEEEEEECCeeeEEecCCCCCccCC-HHHHHHH
Confidence 899999999999999965 68999999999999999999999999999999 6666665
No 11
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=99.15 E-value=4.1e-11 Score=109.52 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=63.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
..+|++|++++.++.+ +++.++. ++++++|.+|||+|++.|.++.+.| +|.||||+.+ + ++|++++
T Consensus 218 aD~I~ld~~~~~~l~~-~v~~l~~--------~~~~~~I~ASGGIt~~ni~~~~~aG--aD~i~vGs~i-~--~a~~~D~ 283 (299)
T 2jbm_A 218 ADLVLLDNFKPEELHP-TATVLKA--------QFPSVAVEASGGITLDNLPQFCGPH--IDVISMGMLT-Q--AAPALDF 283 (299)
T ss_dssp CSEEEEESCCHHHHHH-HHHHHHH--------HCTTSEEEEESSCCTTTHHHHCCTT--CCEEECTHHH-H--SCCCCCE
T ss_pred CCEEEECCCCHHHHHH-HHHHhhc--------cCCCeeEEEECCCCHHHHHHHHHCC--CCEEEEChhh-c--CCCCcce
Confidence 6799999999977754 4457775 5789999999999999999999999 6999999954 3 3689999
Q ss_pred EEEEeEEcCcccccc
Q 025365 102 VFKLVEINKQPRIKL 116 (254)
Q Consensus 102 vyKlv~~~g~p~~K~ 116 (254)
+||+++++|+|++|+
T Consensus 284 s~~i~~~~g~p~~K~ 298 (299)
T 2jbm_A 284 SLKLFAKEVAPVPKI 298 (299)
T ss_dssp EEEEEEEC-------
T ss_pred EEEEEEeCCcccccc
Confidence 999999999999997
No 12
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=98.77 E-value=5.1e-09 Score=95.45 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=43.5
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
..+||+|++++.++ ++++++++..+ +||++++|.+|||+|++.|.++.+.| +|.||||+.+ .++|++|+
T Consensus 220 aD~I~ld~~~~~~l-~~~v~~l~~~~-----~g~~~v~I~ASGGIt~~ni~~~~~~G--vD~i~vGs~i---~~a~~~D~ 288 (294)
T 3c2e_A 220 ADVIMLDNFKGDGL-KMCAQSLKNKW-----NGKKHFLLECSGGLNLDNLEEYLCDD--IDIYSTSSIH---QGTPVIDF 288 (294)
T ss_dssp CSEEECCC---------------------------CCEEEEECCCCC------CCCS--CSEEECGGGT---SSCCCCCE
T ss_pred CCEEEECCCCHHHH-HHHHHHhcccc-----cCCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEechh---cCCCCCce
Confidence 67999999998776 44556666520 16889999999999999999999999 6999999986 34789999
Q ss_pred EEEEeE
Q 025365 102 VFKLVE 107 (254)
Q Consensus 102 vyKlv~ 107 (254)
+||+||
T Consensus 289 s~~i~~ 294 (294)
T 3c2e_A 289 SLKLAH 294 (294)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999986
No 13
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=98.50 E-value=2.2e-07 Score=84.93 Aligned_cols=69 Identities=25% Similarity=0.296 Sum_probs=58.0
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
..+||+|++++..+.+.++.+ ..+++|.+|||+|++.|.++.+.| +|.|+||+-. .++|++|+
T Consensus 230 aD~I~LDn~~~~~l~~av~~i------------~~~v~ieaSGGI~~~~i~~~a~tG--VD~isvG~lt---~sa~~lD~ 292 (298)
T 3gnn_A 230 ARSVLLDNFTLDMMRDAVRVT------------EGRAVLEVSGGVNFDTVRAIAETG--VDRISIGALT---KDVRATDY 292 (298)
T ss_dssp CEEEEEESCCHHHHHHHHHHH------------TTSEEEEEESSCSTTTHHHHHHTT--CSEEECGGGG---TSCCCCCE
T ss_pred CCEEEECCCCHHHHHHHHHHh------------CCCCeEEEEcCCCHHHHHHHHHcC--CCEEEECCee---cCCCccce
Confidence 679999999997776665543 157999999999999999999988 7999999933 34899999
Q ss_pred EEEEeE
Q 025365 102 VFKLVE 107 (254)
Q Consensus 102 vyKlv~ 107 (254)
.||++|
T Consensus 293 sl~i~e 298 (298)
T 3gnn_A 293 SMRIVE 298 (298)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 14
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=98.44 E-value=3.4e-07 Score=84.45 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=57.1
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
..+||+|++++..+.+.+ +.++ .+++|.+|||+|++.|.++.+.| +|.|+||+- + .++|++|+
T Consensus 252 aD~I~LDn~~~~~l~~av-~~l~-----------~~v~ieaSGGIt~~~I~~~a~tG--VD~isvGal-t--~sa~~lD~ 314 (320)
T 3paj_A 252 ADIIMLDNFSLEMMREAV-KINA-----------GRAALENSGNITLDNLKECAETG--VDYISVGAL-T--KHLKALDL 314 (320)
T ss_dssp CSEEEEESCCHHHHHHHH-HHHT-----------TSSEEEEESSCCHHHHHHHHTTT--CSEEECTHH-H--HSBCCCCE
T ss_pred CCEEEECCCCHHHHHHHH-HHhC-----------CCCeEEEECCCCHHHHHHHHHcC--CCEEEECce-e--cCCCccee
Confidence 679999999987764433 4442 47999999999999999999988 799999993 3 34889999
Q ss_pred EEEEeE
Q 025365 102 VFKLVE 107 (254)
Q Consensus 102 vyKlv~ 107 (254)
.||++|
T Consensus 315 sl~i~~ 320 (320)
T 3paj_A 315 SMRFKS 320 (320)
T ss_dssp EEEECC
T ss_pred EEEeeC
Confidence 999975
No 15
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=98.43 E-value=2.4e-07 Score=83.40 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=60.0
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
..+|++|++++..+.+ +++.++. ++++++|.+|||+|++.|.++.+.| +|.||||+.+. ++|++|+
T Consensus 203 aD~I~ld~~~~~~l~~-~v~~l~~--------~~~~~~i~AsGGI~~~ni~~~~~aG--aD~i~vGs~i~---~a~~~D~ 268 (273)
T 2b7n_A 203 ADIVMCDNLSVLETKE-IAAYRDA--------HYPFVLLEASGNISLESINAYAKSG--VDAISVGALIH---QATFIDM 268 (273)
T ss_dssp CSEEEEETCCHHHHHH-HHHHHHH--------HCTTCEEEEESSCCTTTHHHHHTTT--CSEEECTHHHH---TCCCCCE
T ss_pred CCEEEECCCCHHHHHH-HHHHhhc--------cCCCcEEEEECCCCHHHHHHHHHcC--CcEEEEcHHhc---CCCCCce
Confidence 6799999999877754 4447776 5788999999999999999999999 69999999865 4789999
Q ss_pred EEEE
Q 025365 102 VFKL 105 (254)
Q Consensus 102 vyKl 105 (254)
.+|+
T Consensus 269 s~~i 272 (273)
T 2b7n_A 269 HMKM 272 (273)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9986
No 16
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=97.99 E-value=5.8e-06 Score=75.40 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=55.1
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
..+|++|++++..+...++ +++ .+++|.+|||+|++.|.++.+.| +|.||||+ +++ ++|++|+
T Consensus 229 aD~I~ld~~~~e~l~~~v~-~~~-----------~~~~I~ASGGIt~~~i~~~a~~G--vD~isvGs-li~--~a~~~D~ 291 (296)
T 1qap_A 229 ADIIMLDNFNTDQMREAVK-RVN-----------GQARLEVSGNVTAETLREFAETG--VDFISVGA-LTK--HVRALDL 291 (296)
T ss_dssp CSEEEESSCCHHHHHHHHH-TTC-----------TTCCEEECCCSCHHHHHHHHHTT--CSEEECSH-HHH--EEECCCE
T ss_pred CCEEEECCCCHHHHHHHHH-HhC-----------CCCeEEEECCCCHHHHHHHHHcC--CCEEEEeH-HHc--CCCCCce
Confidence 6799999999977765543 321 36899999999999999999999 69999999 443 4789999
Q ss_pred EEEE
Q 025365 102 VFKL 105 (254)
Q Consensus 102 vyKl 105 (254)
.+|+
T Consensus 292 sl~i 295 (296)
T 1qap_A 292 SMRF 295 (296)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9986
No 17
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=97.39 E-value=0.00056 Score=61.90 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=56.0
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|++|.-++ ...+++++.++.. +++++|.+|||++++.|.++.+.| +|.|+||+-... +|++|+
T Consensus 215 aD~I~LDn~~~-~~~~~~v~~l~~~--------~~~v~ieaSGGIt~~~i~~~a~tG--VD~isvG~l~~~---a~~~D~ 280 (284)
T 1qpo_A 215 PELILLDNFAV-WQTQTAVQRRDSR--------APTVMLESSGGLSLQTAATYAETG--VDYLAVGALTHS---VRVLDI 280 (284)
T ss_dssp CSEEEEETCCH-HHHHHHHHHHHHH--------CTTCEEEEESSCCTTTHHHHHHTT--CSEEECGGGTSS---BCCCCE
T ss_pred CCEEEECCCCH-HHHHHHHHHhhcc--------CCCeEEEEECCCCHHHHHHHHhcC--CCEEEECHHHcC---CCCcce
Confidence 45888888776 4455667777764 367899999999999999999998 899999994433 788999
Q ss_pred EEEE
Q 025365 102 VFKL 105 (254)
Q Consensus 102 vyKl 105 (254)
.+|+
T Consensus 281 sl~i 284 (284)
T 1qpo_A 281 GLDM 284 (284)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 18
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=97.17 E-value=0.00061 Score=61.85 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=52.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|++|..++..+. ++.+.++ .+++|.+|||++++.|.++.+.| +|.++||+-.-. .|++|+
T Consensus 219 aD~I~LDn~~~~~l~-~av~~~~-----------~~v~ieaSGGIt~~~i~~~a~tG--VD~IsvGalt~s---a~~lD~ 281 (287)
T 3tqv_A 219 ADIVMLDNFSGEDID-IAVSIAR-----------GKVALEVSGNIDRNSIVAIAKTG--VDFISVGAITKH---IKAIDL 281 (287)
T ss_dssp CSEEEEESCCHHHHH-HHHHHHT-----------TTCEEEEESSCCTTTHHHHHTTT--CSEEECSHHHHS---BCCCCE
T ss_pred CCEEEEcCCCHHHHH-HHHHhhc-----------CCceEEEECCCCHHHHHHHHHcC--CCEEEEChhhcC---Ccccce
Confidence 679999999975432 2232221 47999999999999999999988 899999754433 789999
Q ss_pred EEEEe
Q 025365 102 VFKLV 106 (254)
Q Consensus 102 vyKlv 106 (254)
.+|+.
T Consensus 282 sl~i~ 286 (287)
T 3tqv_A 282 SLQVQ 286 (287)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 99873
No 19
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=97.10 E-value=0.00092 Score=60.56 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=56.5
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|.+|.-++.. .+++++.++.. +.+++|.+|||++++.|.++.+.| +|.++||+.+.. +|++|+
T Consensus 214 aD~I~LDn~~~e~-l~~av~~l~~~--------~~~v~ieASGGIt~eni~~~a~tG--VD~IsvGslt~s---a~~~D~ 279 (285)
T 1o4u_A 214 ADIVMLDNLSPEE-VKDISRRIKDI--------NPNVIVEVSGGITEENVSLYDFET--VDVISSSRLTLQ---EVFVDL 279 (285)
T ss_dssp CSEEEEESCCHHH-HHHHHHHHHHH--------CTTSEEEEEECCCTTTGGGGCCTT--CCEEEEGGGTSS---CCCCCE
T ss_pred CCEEEECCCCHHH-HHHHHHHhhcc--------CCCceEEEECCCCHHHHHHHHHcC--CCEEEEeHHHcC---CCCcce
Confidence 4578888877644 45566666653 257899999999999999999888 899999995544 789999
Q ss_pred EEEEe
Q 025365 102 VFKLV 106 (254)
Q Consensus 102 vyKlv 106 (254)
.+|++
T Consensus 280 sl~i~ 284 (285)
T 1o4u_A 280 SLEIQ 284 (285)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99975
No 20
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=97.07 E-value=0.0014 Score=59.90 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=51.8
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 025365 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (254)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~ 101 (254)
...|++|.-++.. +++..... + .+++|.+|||++++.|.++.+.| +|.++||. |++ +.|++|+
T Consensus 228 aDiImLDn~s~~~----l~~av~~~------~--~~v~leaSGGIt~~~i~~~A~tG--VD~IsvGa-lth--sa~~lDi 290 (300)
T 3l0g_A 228 VDMILLDNMSISE----IKKAVDIV------N--GKSVLEVSGCVNIRNVRNIALTG--VDYISIGC-ITN--SFQNKDI 290 (300)
T ss_dssp CSEEEEESCCHHH----HHHHHHHH------T--TSSEEEEESSCCTTTHHHHHTTT--CSEEECGG-GTS--SCCCCCE
T ss_pred CCEEEECCCCHHH----HHHHHHhh------c--CceEEEEECCCCHHHHHHHHHcC--CCEEEeCc-ccc--CCCccee
Confidence 5789999988633 23333332 1 37899999999999999999988 89999994 443 3789999
Q ss_pred EEEE
Q 025365 102 VFKL 105 (254)
Q Consensus 102 vyKl 105 (254)
.+|+
T Consensus 291 sl~i 294 (300)
T 3l0g_A 291 GLDI 294 (300)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9998
No 21
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=96.35 E-value=0.022 Score=51.46 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=40.0
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeE
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~ 107 (254)
+++|++|||++++.|.++.+.| +|.++||+.+.. +|++|+.+|+++
T Consensus 240 ~ipi~AsGGIt~eni~~~a~tG--vD~IsVgs~~~~---a~~~D~sl~i~~ 285 (286)
T 1x1o_A 240 RVPLEASGNMTLERAKAAAEAG--VDYVSVGALTHS---AKALDLSLLVVR 285 (286)
T ss_dssp SSCEEEESSCCHHHHHHHHHHT--CSEEECTHHHHS---CCCCCEEEEEEE
T ss_pred CCeEEEEcCCCHHHHHHHHHcC--CCEEEEcHHHcC---CCceeeEEEEec
Confidence 5789999999999999999999 899999774433 789999999864
No 22
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=90.53 E-value=0.36 Score=40.08 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.1
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+++.|+++||++.+.+.++.+.| +|++.||+.++.+.
T Consensus 158 ~~~~i~~~gGI~~~~~~~~~~~G--ad~vvvGsai~~~~ 194 (211)
T 3f4w_A 158 RKARIAVAGGISSQTVKDYALLG--PDVVIVGSAITHAA 194 (211)
T ss_dssp SSCEEEEESSCCTTTHHHHHTTC--CSEEEECHHHHTCS
T ss_pred CCCcEEEECCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 46789999999999999999988 89999999998754
No 23
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=90.04 E-value=1.3 Score=35.93 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=48.8
Q ss_pred hhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE-EeecCcc
Q 025365 16 NDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA-FGIGTYL 90 (254)
Q Consensus 16 ~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~-fGVGT~l 90 (254)
++.+..+.|+=.-++.-....+++.+.|++. |..+++|++.|.+-......+.+.| +|. |+.||.+
T Consensus 66 ~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~-------g~~~i~v~vGG~~~~~~~~~l~~~G--~d~v~~~~~~~ 132 (161)
T 2yxb_A 66 VQEDVDVIGVSILNGAHLHLMKRLMAKLREL-------GADDIPVVLGGTIPIPDLEPLRSLG--IREIFLPGTSL 132 (161)
T ss_dssp HHTTCSEEEEEESSSCHHHHHHHHHHHHHHT-------TCTTSCEEEEECCCHHHHHHHHHTT--CCEEECTTCCH
T ss_pred HhcCCCEEEEEeechhhHHHHHHHHHHHHhc-------CCCCCEEEEeCCCchhcHHHHHHCC--CcEEECCCCCH
Confidence 3445556666555556566777777888876 7778999999999888887788888 564 9999864
No 24
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=87.87 E-value=0.61 Score=40.40 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeec-CcccccC
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG-TYLVTCY 94 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVG-T~l~t~~ 94 (254)
-.+++|+++++. |+ ++.|.+-||++++.+..+.+.| .|.|-+| +.+..+.
T Consensus 153 kI~~lr~~~~~~-------~~-~~~I~VdGGI~~~~~~~~~~aG--Ad~~V~G~saif~~~ 203 (231)
T 3ctl_A 153 KLAELKAWRERE-------GL-EYEIEVDGSCNQATYEKLMAAG--ADVFIVGTSGLFNHA 203 (231)
T ss_dssp HHHHHHHHHHHH-------TC-CCEEEEESCCSTTTHHHHHHHT--CCEEEECTTTTGGGC
T ss_pred HHHHHHHHHhcc-------CC-CceEEEECCcCHHHHHHHHHcC--CCEEEEccHHHhCCC
Confidence 346678887765 54 4779999999999999999999 8999999 8888643
No 25
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=87.67 E-value=2.4 Score=39.00 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=38.9
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEEcCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ 111 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~ 111 (254)
++.|+++||+ +...|.+....| .|+.+|||.|+.+...|. ++..++|+
T Consensus 207 ~iPVIA~GGI~~~~di~kala~G--Ad~V~vGs~~~~t~Esp~-----~~~~~~g~ 255 (361)
T 3khj_A 207 GIPIIADGGIRYSGDIGKALAVG--ASSVMIGSILAGTEESPG-----EKELIGDT 255 (361)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHT--CSEEEESTTTTTBTTSSC-----EEEEETTE
T ss_pred CCeEEEECCCCCHHHHHHHHHcC--CCEEEEChhhhcCCcCCc-----chhhcCCe
Confidence 4679999999 899999999999 789999999999877664 34445553
No 26
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=86.62 E-value=0.37 Score=40.21 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.4
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++.+.+.++.+.| ++++.|||.+..+
T Consensus 148 ~ipvia~GGI~~~~i~~~~~~G--a~gv~vGsai~~~ 182 (212)
T 2v82_A 148 DIAVFAVGGVTPENLAQWIDAG--CAGAGLGSDLYRA 182 (212)
T ss_dssp TCEEEEESSCCTTTHHHHHHHT--CSEEEECTTTCCT
T ss_pred CCeEEEeCCCCHHHHHHHHHcC--CCEEEEChHHhCC
Confidence 5899999999999999999988 8999999999874
No 27
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=84.55 E-value=4 Score=37.70 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=36.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~ 100 (254)
++.||++||+ +...|.+.+..| .|+.+|||.|+.+...|.-.
T Consensus 211 ~iPVIA~GGI~~~~di~kala~G--Ad~V~vGs~f~~t~Esp~~~ 253 (366)
T 4fo4_A 211 GIPVIADGGIRFSGDISKAIAAG--ASCVMVGSMFAGTEEAPGEV 253 (366)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTTTTBTTSSSCC
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChHhhcCCCCCchh
Confidence 5679999999 899999999999 68999999999987766543
No 28
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=84.52 E-value=3.3 Score=38.85 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=35.8
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l 99 (254)
++.||++||+ +...|.+....| .|+..|||.|+.+...|.-
T Consensus 246 ~IPVIA~GGI~~~~di~kalalG--Ad~V~vGt~f~~t~Es~~~ 287 (400)
T 3ffs_A 246 GIPIIADGGIRYSGDIGKALAVG--ASSVMIGSILAGTEESPGE 287 (400)
T ss_dssp TCCEEEESCCCSHHHHHHHHTTT--CSEEEECGGGTTBTTSSCC
T ss_pred CCCEEecCCCCCHHHHHHHHHcC--CCEEEEChHHhcCCCCCch
Confidence 5779999999 699999999999 7899999999998877654
No 29
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=84.23 E-value=5 Score=36.43 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhhcCCCccEEe---eCC--------CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIR---LDS--------GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVR---lDS--------GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~ 72 (254)
+..++.++++|.+.|..+.-|- .+. |....+++++|+. .++.|+++|++ +.+.+.
T Consensus 238 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~-------------~~iPVi~~Ggi~t~e~a~ 304 (349)
T 3hgj_A 238 LEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKR-------------VGLRTGAVGLITTPEQAE 304 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHH-------------HCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHH-------------cCceEEEECCCCCHHHHH
Confidence 4567888888887776544332 111 1112223333322 14579999998 799999
Q ss_pred HHhhcCCcccEEeecCccccc
Q 025365 73 ALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 73 ~l~~~g~~id~fGVGT~l~t~ 93 (254)
++++.|. +|..++|+.++..
T Consensus 305 ~~l~~G~-aD~V~iGR~~lan 324 (349)
T 3hgj_A 305 TLLQAGS-ADLVLLGRVLLRD 324 (349)
T ss_dssp HHHHTTS-CSEEEESTHHHHC
T ss_pred HHHHCCC-ceEEEecHHHHhC
Confidence 9998874 8999999999874
No 30
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=84.22 E-value=1.2 Score=37.56 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
..+++|+.+.+. + .++.|++.||++++.+.++.+.| .|++.||+.++.+.+
T Consensus 165 ~i~~l~~~~~~~-------~-~~~pi~v~GGI~~~n~~~~~~aG--ad~vvvgSaI~~a~d 215 (230)
T 1rpx_A 165 KISDLRKICAER-------G-LNPWIEVDGGVGPKNAYKVIEAG--ANALVAGSAVFGAPD 215 (230)
T ss_dssp HHHHHHHHHHHH-------T-CCCEEEEESSCCTTTHHHHHHHT--CCEEEESHHHHTSSC
T ss_pred HHHHHHHHHHhc-------C-CCceEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCCCC
Confidence 335566666543 3 25679999999999999998888 799999999987543
No 31
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=83.49 E-value=0.94 Score=39.18 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|.+.||++++.+..+.+.| .|.|=+|+.+..+.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aG--Ad~~V~GsaIf~~~ 208 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISASHG--ANIIVAGTSIFNAE 208 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHHHT--CCEEEESHHHHTCS
T ss_pred CCeEEEECCCCHHHHHHHHHcC--CCEEEEeHHHhCCC
Confidence 6789999999999999999999 78999999998743
No 32
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=83.30 E-value=0.38 Score=39.82 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=32.7
Q ss_pred CCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 55 FEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 55 ~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++++.|+++||++.+.+.++.+.| .|+++|||.+..
T Consensus 148 ~~~~pvia~GGI~~~~~~~~~~~G--a~~v~vGs~i~~ 183 (205)
T 1wa3_A 148 FPNVKFVPTGGVNLDNVCEWFKAG--VLAVGVGSALVK 183 (205)
T ss_dssp CTTCEEEEBSSCCTTTHHHHHHHT--CSCEEECHHHHC
T ss_pred CCCCcEEEcCCCCHHHHHHHHHCC--CCEEEECccccC
Confidence 347899999999999999999999 889999999876
No 33
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=82.81 E-value=4.3 Score=37.08 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhcCCCccEEee-----C----CC--ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRL-----D----SG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRl-----D----SG--Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~ 72 (254)
+..++.++++|.+.|..+.-|-. + +| ....+++++|+.+ ++.|++.|++ +.+.+.
T Consensus 245 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-------------~iPVi~~GgI~s~e~a~ 311 (363)
T 3l5l_A 245 LEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA-------------KLPVTSAWGFGTPQLAE 311 (363)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-------------TCCEEECSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc-------------CCcEEEeCCCCCHHHHH
Confidence 56788889999888866443321 1 11 1223333344322 3459999999 699999
Q ss_pred HHhhcCCcccEEeecCccccc
Q 025365 73 ALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 73 ~l~~~g~~id~fGVGT~l~t~ 93 (254)
++++.|. +|..++|+.++..
T Consensus 312 ~~l~~G~-aD~V~iGR~~lan 331 (363)
T 3l5l_A 312 AALQANQ-LDLVSVGRAHLAD 331 (363)
T ss_dssp HHHHTTS-CSEEECCHHHHHC
T ss_pred HHHHCCC-ccEEEecHHHHhC
Confidence 9998874 7999999999874
No 34
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=82.21 E-value=5.2 Score=36.03 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEe---e-----CCCC--hHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIR---L-----DSGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDA 73 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVR---l-----DSGD--l~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~ 73 (254)
...+++++++|.+.|..+.-|= . .++. ...+.+++|+.+ ++.|+++|++ +.+.+.+
T Consensus 228 ~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~-------------~iPVi~~Ggi~s~~~a~~ 294 (338)
T 1z41_A 228 IADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-------------DMATGAVGMITDGSMAEE 294 (338)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-------------CCEEEECSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC-------------CCCEEEECCCCCHHHHHH
Confidence 5678999999999886654331 0 1121 122333333322 4579999999 8999999
Q ss_pred HhhcCCcccEEeecCccccc
Q 025365 74 LNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 74 l~~~g~~id~fGVGT~l~t~ 93 (254)
+.+.|. +|..++|+.++..
T Consensus 295 ~l~~G~-aD~V~iGR~~i~n 313 (338)
T 1z41_A 295 ILQNGR-ADLIFIGRELLRD 313 (338)
T ss_dssp HHHTTS-CSEEEECHHHHHC
T ss_pred HHHcCC-ceEEeecHHHHhC
Confidence 998874 7899999999874
No 35
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=81.98 E-value=0.9 Score=37.93 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=31.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++.+.| .|++.||+.|..
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~G--ad~v~vG~al~~ 209 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDLG--VHCSVVGGAITR 209 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHHHC
T ss_pred CCCEEEecCCCCHHHHHHHHHcC--CCEEEEChHHcC
Confidence 5789999999 999999999998 899999999865
No 36
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=80.62 E-value=2 Score=37.54 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=31.4
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||+ +.+.+.++.+.| .|+.+|||.++.+
T Consensus 241 ~ipvia~GGI~~~~d~~~~l~~G--Ad~V~vg~~~l~~ 276 (311)
T 1ep3_A 241 DIPIIGMGGVANAQDVLEMYMAG--ASAVAVGTANFAD 276 (311)
T ss_dssp SSCEEECSSCCSHHHHHHHHHHT--CSEEEECTHHHHC
T ss_pred CCCEEEECCcCCHHHHHHHHHcC--CCEEEECHHHHcC
Confidence 6779999999 799999999888 8999999999874
No 37
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=80.16 E-value=3.1 Score=36.28 Aligned_cols=66 Identities=24% Similarity=0.201 Sum_probs=45.1
Q ss_pred cCCCccEEee----CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccc
Q 025365 18 LGYKAVGIRL----DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 18 ~G~~~~gVRl----DSG-Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~ 91 (254)
.|..+.||-. |.+ |+ ..+.++++.+... + .++.++++||++ .+.+.++.+ | +|+|-||+.|+
T Consensus 173 ~gad~IGvn~~~l~~~~~dl-~~~~~L~~~i~~~-------~-~~~~vIAegGI~s~~dv~~l~~-G--a~gvlVGsAl~ 240 (254)
T 1vc4_A 173 AGAEVLGINNRDLATLHINL-ETAPRLGRLARKR-------G-FGGVLVAESGYSRKEELKALEG-L--FDAVLIGTSLM 240 (254)
T ss_dssp HTCSEEEEESBCTTTCCBCT-THHHHHHHHHHHT-------T-CCSEEEEESCCCSHHHHHTTTT-T--CSEEEECHHHH
T ss_pred cCCCEEEEccccCcCCCCCH-HHHHHHHHhCccc-------c-CCCeEEEEcCCCCHHHHHHHHc-C--CCEEEEeHHHc
Confidence 3566667743 222 33 3344444444331 1 256799999998 999999999 8 89999999999
Q ss_pred ccCC
Q 025365 92 TCYA 95 (254)
Q Consensus 92 t~~~ 95 (254)
...+
T Consensus 241 ~~~d 244 (254)
T 1vc4_A 241 RAPD 244 (254)
T ss_dssp TSSC
T ss_pred CCCC
Confidence 8543
No 38
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=80.07 E-value=1.6 Score=38.34 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
-.+++|+++++. | .++.|.+.||++++.+..+.+.| .|.|=+|+.+..+.
T Consensus 181 KI~~lr~~~~~~-------~-~~~~I~VDGGI~~~ti~~~~~aG--AD~~V~GSaIf~a~ 230 (246)
T 3inp_A 181 KAKEISKWISST-------D-RDILLEIDGGVNPYNIAEIAVCG--VNAFVAGSAIFNSD 230 (246)
T ss_dssp HHHHHHHHHHHH-------T-SCCEEEEESSCCTTTHHHHHTTT--CCEEEESHHHHTSS
T ss_pred HHHHHHHHHHhc-------C-CCeeEEEECCcCHHHHHHHHHcC--CCEEEEehHHhCCC
Confidence 356677777765 4 35779999999999999999999 78888999888654
No 39
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=79.92 E-value=1.1 Score=37.94 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=30.8
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||++ .+.+.++.+.| +|++.||+.|..
T Consensus 186 ~ipvia~GGI~s~~~~~~~~~~G--ad~v~vGsal~~ 220 (234)
T 1yxy_A 186 GIAVIAEGKIHSPEEAKKINDLG--VAGIVVGGAITR 220 (234)
T ss_dssp TCCEEEESCCCSHHHHHHHHTTC--CSEEEECHHHHC
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHHhC
Confidence 46799999998 99999999998 899999998865
No 40
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=79.70 E-value=2 Score=37.34 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhh--cCCcccEEeecCccccc
Q 025365 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK--QGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 37 ~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~--~g~~id~fGVGT~l~t~ 93 (254)
+++|+++++. |+ ++.|.+-||++++.+..+.+ .| +|.|=+|+.+..+
T Consensus 175 ~~lr~~~~~~-------~~-~~~I~vdGGI~~~~~~~~~~~~aG--ad~~VvGSaIf~~ 223 (237)
T 3cu2_A 175 IQVEKRLGNR-------RV-EKLINIDGSMTLELAKYFKQGTHQ--IDWLVSGSALFSG 223 (237)
T ss_dssp HHHHHHHGGG-------GG-GCEEEEESSCCHHHHHHHHHSSSC--CCCEEECGGGGSS
T ss_pred HHHHHHHHhc-------CC-CceEEEECCcCHHHHHHHHHhCCC--CcEEEEeeHHhCC
Confidence 4556666553 33 46799999999999999999 88 8889999999874
No 41
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=79.16 E-value=2.2 Score=41.75 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
+...+-+.+|-+.|..+.-|..--|.-......++ .+.+. |+++.|++.|--+.+....|.+.|+...--|
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~-~ik~~--------~p~~~viaGNVaT~e~a~~Li~aGAD~vkVG 350 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIK-WIKQT--------YPKIDVIAGNVVTREQAAQLIAAGADGLRIG 350 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSCCCSHHHHHHHH-HHHHH--------CTTSEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred ccHHHHHHHHHhcCCcEEEEeccccccHHHHHHHH-HHHhh--------CCcceEEeccccCHHHHHHHHHcCCCEEeec
Confidence 35566777888888765555444487444433333 33332 5789999999999999999999998766667
Q ss_pred ec------CcccccCCCCccceEEEEeEE
Q 025365 86 IG------TYLVTCYAQAALGCVFKLVEI 108 (254)
Q Consensus 86 VG------T~l~t~~~~p~l~~vyKlv~~ 108 (254)
|| |++++..+.|-+..+|++.+.
T Consensus 351 iGpGSiCtTr~v~GvG~PQ~tAi~~~a~~ 379 (556)
T 4af0_A 351 MGSGSICITQEVMAVGRPQGTAVYAVAEF 379 (556)
T ss_dssp SSCSTTBCCTTTCCSCCCHHHHHHHHHHH
T ss_pred CCCCcccccccccCCCCcHHHHHHHHHHH
Confidence 76 455666778989888887754
No 42
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=79.15 E-value=6 Score=36.45 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=34.8
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
.++.|+++||+. ...+.++...| .|+.+|||.++.+...|.
T Consensus 255 ~~ipVia~GGI~~~~d~~~ala~G--Ad~V~iG~~~l~~~e~~~ 296 (404)
T 1eep_A 255 TNICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLFAGTKESPS 296 (404)
T ss_dssp SSCEEEEESCCCSHHHHHHHHHHT--CSEEEECHHHHTBTTSSS
T ss_pred cCceEEEECCCCCHHHHHHHHHcC--CCHHhhCHHHhcCCCCCc
Confidence 368899999995 88899988899 899999999998766553
No 43
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=79.05 E-value=0.84 Score=38.63 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=32.5
Q ss_pred CCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 55 FEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 55 ~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++++.+++.||++.+.+.++.+.| .++++|||.+..
T Consensus 149 ~~~ipvvaiGGI~~~n~~~~l~aG--a~~vavgSai~~ 184 (207)
T 2yw3_A 149 FPEVRFLPTGGIKEEHLPHYAALP--NLLAVGGSWLLQ 184 (207)
T ss_dssp CTTCEEEEBSSCCGGGHHHHHTCS--SBSCEEESGGGS
T ss_pred CCCCcEEEeCCCCHHHHHHHHhCC--CcEEEEehhhhC
Confidence 458899999999999999999988 788999999876
No 44
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=79.00 E-value=1.5 Score=38.86 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=32.8
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.+++.||++ .+.+.++.+.| +|+|.||+.|+.+.
T Consensus 213 ~~pvVaegGI~t~edv~~l~~~G--adgvlVGsal~~a~ 249 (272)
T 3qja_A 213 SVIRIAESGVRGTADLLAYAGAG--ADAVLVGEGLVTSG 249 (272)
T ss_dssp TSEEEEESCCCSHHHHHHHHHTT--CSEEEECHHHHTCS
T ss_pred cCEEEEECCCCCHHHHHHHHHcC--CCEEEEcHHHhCCC
Confidence 57899999998 99999999999 89999999998854
No 45
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=78.97 E-value=0.82 Score=38.34 Aligned_cols=36 Identities=11% Similarity=0.298 Sum_probs=32.2
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++.+.+.++.+.| .|++.||+.+..+.
T Consensus 164 ~~pvia~GGI~~~nv~~~~~~G--a~gv~vgs~i~~~~ 199 (221)
T 1yad_A 164 SIPVIAIGGMTPDRLRDVKQAG--ADGIAVMSGIFSSA 199 (221)
T ss_dssp CSCEEEESSCCGGGHHHHHHTT--CSEEEESHHHHTSS
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CCEEEEhHHhhCCC
Confidence 5679999999999999999988 89999999998753
No 46
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=78.67 E-value=5.5 Score=36.14 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEe---eC-----CCC--hHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIR---LD-----SGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDA 73 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVR---lD-----SGD--l~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~ 73 (254)
+..++.++++|.+.|..+.-|- .+ ++. ...+++++++ + -++.|+++|++ +.+.+.+
T Consensus 228 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~----~---------~~iPVi~~GgI~s~e~a~~ 294 (340)
T 3gr7_A 228 AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRR----E---------ADIPTGAVGLITSGWQAEE 294 (340)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHH----H---------TTCCEEEESSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHH----H---------cCCcEEeeCCCCCHHHHHH
Confidence 5678999999999886644331 11 111 1223333332 2 13569999998 6899999
Q ss_pred HhhcCCcccEEeecCccccc
Q 025365 74 LNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 74 l~~~g~~id~fGVGT~l~t~ 93 (254)
+++.|. +|..++|+.++..
T Consensus 295 ~L~~G~-aD~V~iGR~~lan 313 (340)
T 3gr7_A 295 ILQNGR-ADLVFLGRELLRN 313 (340)
T ss_dssp HHHTTS-CSEEEECHHHHHC
T ss_pred HHHCCC-eeEEEecHHHHhC
Confidence 998774 7999999999874
No 47
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=78.62 E-value=2.7 Score=35.04 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=30.6
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++ .+.+.++.+.| +|++.||+.+...
T Consensus 198 ~~pvia~GGi~~~~~~~~~~~~G--a~~v~vgsal~~~ 233 (253)
T 1h5y_A 198 RIPVIASGGAGRVEHFYEAAAAG--ADAVLAASLFHFR 233 (253)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTT
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CcHHHHHHHHHcC
Confidence 56799999998 58999998877 8999999999874
No 48
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=77.59 E-value=1.9 Score=36.90 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
...+++|++.++. |+ ++.|.+-||++++.+.++.+.| .|++=||+.+..+.
T Consensus 158 ~~i~~lr~~~~~~-------~~-~~~I~v~GGI~~~~~~~~~~aG--ad~vvvGSai~~a~ 208 (230)
T 1tqj_A 158 PKIRALRQMCDER-------GL-DPWIEVDGGLKPNNTWQVLEAG--ANAIVAGSAVFNAP 208 (230)
T ss_dssp HHHHHHHHHHHHH-------TC-CCEEEEESSCCTTTTHHHHHHT--CCEEEESHHHHTSS
T ss_pred HHHHHHHHHHHhc-------CC-CCcEEEECCcCHHHHHHHHHcC--CCEEEECHHHHCCC
Confidence 3456677777765 43 5779999999999999999988 79999999998753
No 49
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=76.61 E-value=8.5 Score=35.36 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred HHHHHHHHhh-cCCCccEEeeCCC---------ChHHHHHHHHHHHHHHhHhh-CCCC------C-------CceEEEEe
Q 025365 8 FCAVALALND-LGYKAVGIRLDSG---------DLAYLSCEARKFFRTIEKEF-GVPD------F-------EKMSITAS 63 (254)
Q Consensus 8 ai~va~~l~~-~G~~~~gVRlDSG---------Dl~~ls~~~r~~ld~~g~~l-~~~g------~-------~~vkI~~S 63 (254)
+++|.+++++ .|....+||+-.. +....+.++-+.|.++|..+ .+.+ + -++.|++.
T Consensus 214 ~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~ 293 (361)
T 3gka_A 214 LLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFGGDAIGQQLKAAFGGPFIVN 293 (361)
T ss_dssp HHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCSTTCCHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHcCCCEEEe
Confidence 3455555554 3433567887652 23444555556666553211 0000 0 13468999
Q ss_pred CCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 64 NDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 64 ~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
|+++.+.+.++++.|. +|..++|..++...
T Consensus 294 Ggit~e~a~~~l~~G~-aD~V~iGR~~ladP 323 (361)
T 3gka_A 294 ENFTLDSAQAALDAGQ-ADAVAWGKLFIANP 323 (361)
T ss_dssp SSCCHHHHHHHHHTTS-CSEEEESHHHHHCT
T ss_pred CCCCHHHHHHHHHcCC-ccEEEECHHhHhCc
Confidence 9999999999998764 79999999998743
No 50
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=76.41 E-value=2.2 Score=36.20 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCH-HHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNE-ETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde-~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++. +.+.++.+.| +|++.|||.+...
T Consensus 191 ~~pi~~~GGI~~~e~i~~~~~~G--ad~vivGsai~~~ 226 (248)
T 1geq_A 191 RNKVAVGFGVSKREHVVSLLKEG--ANGVVVGSALVKI 226 (248)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTT--CSEEEECHHHHHH
T ss_pred CCCEEEEeecCCHHHHHHHHHcC--CCEEEEcHHHHhh
Confidence 577999999998 9999998888 8999999999874
No 51
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=76.40 E-value=2.4 Score=35.09 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=31.8
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+..|+++||++.+.+.++.+.| .|++-||+.+..+.
T Consensus 170 ~~~i~v~GGI~~~~~~~~~~~G--ad~vvvGsai~~~~ 205 (220)
T 2fli_A 170 SFDIEVDGGVDNKTIRACYEAG--ANVFVAGSYLFKAS 205 (220)
T ss_dssp CCEEEEESSCCTTTHHHHHHHT--CCEEEESHHHHTSS
T ss_pred CceEEEECcCCHHHHHHHHHcC--CCEEEEChHHhCCC
Confidence 5679999999999999998888 78999999998753
No 52
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=75.43 E-value=7.7 Score=35.50 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEE
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vy 103 (254)
++.|+++||+ +...|.+....| .|+.+||+.+..+...|.-.+.|
T Consensus 277 ~ipvia~GGI~~~~dv~kalalG--A~~V~iG~~~l~~~es~~~~~~~ 322 (393)
T 2qr6_A 277 YVHIIADGSIENSGDVVKAIACG--ADAVVLGSPLARAEEAAGKGYFW 322 (393)
T ss_dssp CCEEEECSSCCSHHHHHHHHHHT--CSEEEECGGGGGSTTCTTTTEEC
T ss_pred ceEEEEECCCCCHHHHHHHHHcC--CCEEEECHHHHcCCCCCCceEEE
Confidence 4889999999 688899988889 79999999999877666555554
No 53
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=75.40 E-value=6.6 Score=36.19 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.0
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++|+++.+.+.+++++|. +|..+||..++..
T Consensus 299 ~iPvi~~Ggi~~~~a~~~l~~g~-aD~V~igR~~l~~ 334 (377)
T 2r14_A 299 KGGLIYCGNYDAGRAQARLDDNT-ADAVAFGRPFIAN 334 (377)
T ss_dssp CSEEEEESSCCHHHHHHHHHTTS-CSEEEESHHHHHC
T ss_pred CCCEEEECCCCHHHHHHHHHCCC-ceEEeecHHHHhC
Confidence 45799999999999999998764 7999999999874
No 54
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=75.08 E-value=9.4 Score=34.90 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhhcCCCccEEe---eCCC-C-hHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIR---LDSG-D-LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVR---lDSG-D-l~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
+..++.++++|.+.|..+..|= .+.+ + ...+.++ +.++ -++.|++.|+++.+.+.+++++|.
T Consensus 249 ~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~----i~~~---------~~iPvi~~Ggi~~~~a~~~l~~g~ 315 (365)
T 2gou_A 249 ILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRA----LREA---------YQGVLIYAGRYNAEKAEQAINDGL 315 (365)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHH----HHHH---------CCSEEEEESSCCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHH----HHHH---------CCCcEEEeCCCCHHHHHHHHHCCC
Confidence 4567778888877775543331 1101 1 1122222 2222 245799999999999999998764
Q ss_pred cccEEeecCccccc
Q 025365 80 EVDAFGIGTYLVTC 93 (254)
Q Consensus 80 ~id~fGVGT~l~t~ 93 (254)
+|..+||+.++..
T Consensus 316 -aD~V~igR~~i~~ 328 (365)
T 2gou_A 316 -ADMIGFGRPFIAN 328 (365)
T ss_dssp -CSEEECCHHHHHC
T ss_pred -cceehhcHHHHhC
Confidence 7999999999874
No 55
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=74.92 E-value=1.1 Score=36.81 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+++||++.+.+.++.+.| .|++.||+.+....
T Consensus 162 ~~pvia~GGI~~~nv~~~~~~G--a~gv~vgs~i~~~~ 197 (215)
T 1xi3_A 162 KIPVVAIGGINKDNAREVLKTG--VDGIAVISAVMGAE 197 (215)
T ss_dssp SSCEEEESSCCTTTHHHHHTTT--CSEEEESHHHHTSS
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEEhHHHhCCC
Confidence 5679999999999999998877 79999999998743
No 56
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=74.77 E-value=10 Score=34.85 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=52.7
Q ss_pred HHHHHHHHhh-cCCCccEEeeCCCC---------hHHHHHHHHHHHHHHhHhh-CCCC------C-------CceEEEEe
Q 025365 8 FCAVALALND-LGYKAVGIRLDSGD---------LAYLSCEARKFFRTIEKEF-GVPD------F-------EKMSITAS 63 (254)
Q Consensus 8 ai~va~~l~~-~G~~~~gVRlDSGD---------l~~ls~~~r~~ld~~g~~l-~~~g------~-------~~vkI~~S 63 (254)
+++|.+++++ .|....+||+-..| ....+.++-+.|.++|..+ .+.+ + -++.||+.
T Consensus 206 ~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~ik~~~~iPvi~~ 285 (362)
T 4ab4_A 206 LLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREADDSIGPLIKEAFGGPYIVN 285 (362)
T ss_dssp HHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHCCCCEEEe
Confidence 3455555544 34335678876542 2344555556666553211 0000 0 13468999
Q ss_pred CCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 64 NDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 64 ~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
|+++.+.+.++++.|. +|..++|..++...
T Consensus 286 Ggit~e~a~~~l~~g~-aD~V~iGR~~lanP 315 (362)
T 4ab4_A 286 ERFDKASANAALASGK-ADAVAFGVPFIANP 315 (362)
T ss_dssp SSCCHHHHHHHHHTTS-CSEEEESHHHHHCT
T ss_pred CCCCHHHHHHHHHcCC-ccEEEECHHhHhCc
Confidence 9999999999998764 79999999998743
No 57
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=74.65 E-value=13 Score=35.24 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=34.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEE
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFK 104 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyK 104 (254)
++.||++||+ +...+.+....| .|+.+||+.+..+...|. ...||
T Consensus 358 ~ipVia~GGI~~~~di~kala~G--Ad~V~iG~~~l~~~e~~~-~~~~~ 403 (514)
T 1jcn_A 358 GVPIIADGGIQTVGHVVKALALG--ASTVMMGSLLAATTEAPG-EYFFS 403 (514)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTTTTSTTSSC-C----
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCeeeECHHHHcCCcCCc-ceEeE
Confidence 4679999999 578899998899 899999999998765543 33443
No 58
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=74.19 E-value=12 Score=35.49 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=35.0
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.||++||+ +...|.+....| .|+..|||.++.+...|.
T Consensus 332 ~iPVIa~GGI~~~~di~kal~~G--Ad~V~vGs~~~~~~Esp~ 372 (490)
T 4avf_A 332 GVPLIADGGIRFSGDLAKAMVAG--AYCVMMGSMFAGTEEAPG 372 (490)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHT--CSEEEECTTTTTBTTSSS
T ss_pred CCcEEEeCCCCCHHHHHHHHHcC--CCeeeecHHHhcCCCCCC
Confidence 5779999999 899999999999 689999999998776664
No 59
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=74.18 E-value=11 Score=34.54 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.0
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|++.|+++.+.+.+++++|. +|..+||..++..
T Consensus 294 ~iPvi~~Ggit~~~a~~~l~~g~-aD~V~~gR~~l~~ 329 (364)
T 1vyr_A 294 HGVIIGAGAYTAEKAEDLIGKGL-IDAVAFGRDYIAN 329 (364)
T ss_dssp CSEEEEESSCCHHHHHHHHHTTS-CSEEEESHHHHHC
T ss_pred CCCEEEECCcCHHHHHHHHHCCC-ccEEEECHHHHhC
Confidence 45799999999999999998764 7999999998874
No 60
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=73.32 E-value=5.8 Score=34.02 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=32.4
Q ss_pred CCCceEEEEeCCCCHHHHHHHhh-cCCcccEEeecCccccc
Q 025365 54 DFEKMSITASNDLNEETLDALNK-QGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~-~g~~id~fGVGT~l~t~ 93 (254)
.++++++++.||++++.+.++.+ .| ++++| |+.|+..
T Consensus 163 ~~~~ipvvaiGGI~~~N~~~~l~~~G--a~~v~-gSai~~~ 200 (225)
T 1mxs_A 163 PFGDIRFCPTGGVNPANVRNYMALPN--VMCVG-TTWMLDS 200 (225)
T ss_dssp TTTTCEEEEBSSCCTTTHHHHHHSTT--BCCEE-ECTTSCH
T ss_pred hCCCCeEEEECCCCHHHHHHHHhccC--CEEEE-EchhcCc
Confidence 45689999999999999999998 57 78899 9999763
No 61
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=72.79 E-value=14 Score=34.64 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=35.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.|+++||+ +...+.+....| .|+.++|+.++.+...|.
T Consensus 340 ~ipvia~GGI~~~~di~kala~G--Ad~V~iGr~~l~~~e~~~ 380 (494)
T 1vrd_A 340 DVPIIADGGIRYSGDIVKALAAG--AESVMVGSIFAGTEEAPG 380 (494)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTBTTSSS
T ss_pred CCCEEEECCcCCHHHHHHHHHcC--CCEEEECHHHhcCCcCCc
Confidence 6789999999 899999999999 899999999998776664
No 62
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=71.83 E-value=16 Score=33.23 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC------------ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSG------------DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETL 71 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSG------------Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i 71 (254)
+..++.++++|.+. ..+ |=+.+| -...++.++|+.+ ++.|+++|++ +.+.+
T Consensus 229 ~~~~~~~a~~l~~~-vd~--i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~-------------~iPVi~~Ggi~t~e~A 292 (343)
T 3kru_A 229 IDMMVEYINMIKDK-VDL--IDVSSGGLLNVDINLYPGYQVKYAETIKKRC-------------NIKTSAVGLITTQELA 292 (343)
T ss_dssp HHHHHHHHHHHTTT-CSE--EEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-------------TCEEEEESSCCCHHHH
T ss_pred HHHHHHHHHHhhcc-ccE--EeccCCceEeeeecccCceeehHHHHHHHhc-------------CcccceeeeeeHHHHH
Confidence 67888999988776 443 333222 1223333343322 3579999998 58899
Q ss_pred HHHhhcCCcccEEeecCcccccC
Q 025365 72 DALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 72 ~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++++.|. .|..++|..++...
T Consensus 293 e~~l~~G~-aD~V~iGR~~lanP 314 (343)
T 3kru_A 293 EEILSNER-ADLVALGRELLRNP 314 (343)
T ss_dssp HHHHHTTS-CSEEEESHHHHHCT
T ss_pred HHHHhchh-hHHHHHHHHHhcCC
Confidence 99988764 89999999998743
No 63
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=70.30 E-value=9.8 Score=33.35 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=30.2
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .|..+|||.++.
T Consensus 242 ~ipvi~~GGI~~~~da~~~l~~G--Ad~V~vg~~~l~ 276 (311)
T 1jub_A 242 EIQIIGTGGIETGQDAFEHLLCG--ATMLQIGTALHK 276 (311)
T ss_dssp TSEEEEESSCCSHHHHHHHHHHT--CSEEEECHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchHHHh
Confidence 7889999999 778888888888 799999999985
No 64
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=70.26 E-value=4.9 Score=34.28 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=29.3
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||+. .+.+.++.+.| +|++-||+.+...
T Consensus 200 ~ipvia~GGI~~~ed~~~~~~~G--adgv~vgsal~~~ 235 (266)
T 2w6r_A 200 TLPIIASGGAGKMEHFLEAFLAG--ADAALAASVFHFR 235 (266)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHT--CSEEEESTTTC--
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CHHHHccHHHHcC
Confidence 56799999999 59999998877 7999999999874
No 65
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=69.85 E-value=1.3 Score=36.80 Aligned_cols=35 Identities=9% Similarity=0.203 Sum_probs=31.1
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++.+.+.++.+.| .|++.||+.+...
T Consensus 172 ~~pvia~GGI~~~nv~~~~~~G--a~gv~vgs~i~~~ 206 (227)
T 2tps_A 172 SIPIVGIGGITIDNAAPVIQAG--ADGVSMISAISQA 206 (227)
T ss_dssp CCCEEEESSCCTTTSHHHHHTT--CSEEEESHHHHTS
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEhHHhhcC
Confidence 3779999999999999998877 7999999999874
No 66
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=69.71 E-value=3.6 Score=36.11 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=28.9
Q ss_pred EEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 60 ITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 60 I~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
|+++||+ +.+.+.++.+.| +|++.|||.+..+
T Consensus 212 ~~a~GGI~~~e~i~~~~~aG--adgvvvGsai~~~ 244 (297)
T 2zbt_A 212 NFAAGGIATPADAALMMHLG--MDGVFVGSGIFKS 244 (297)
T ss_dssp EEBCSSCCSHHHHHHHHHTT--CSEEEECGGGGGS
T ss_pred EEeeCCCCCHHHHHHHHHcC--CCEEEEchHHhCC
Confidence 4499999 999999999988 7999999999864
No 67
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=69.42 E-value=1.8 Score=36.65 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=32.3
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++++.+.++.+.| +|++=||+.++...
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~aG--aD~vvvGsai~~~~ 208 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAASAG--ANCIVAGSSIFGAA 208 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHHHT--CCEEEESHHHHTSS
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEECHHHHCCC
Confidence 6789999999999999999888 89999999998754
No 68
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=68.77 E-value=2.1 Score=35.19 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=31.8
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++.+.+.++.+.| .|++.||+.++...
T Consensus 158 ~~pi~v~GGI~~~~~~~~~~aG--ad~vvvGsaI~~~~ 193 (207)
T 3ajx_A 158 RVPFSVAGGVKVATIPAVQKAG--AEVAVAGGAIYGAA 193 (207)
T ss_dssp TSCEEEESSCCGGGHHHHHHTT--CSEEEESHHHHTSS
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEEeeeccCCC
Confidence 4569999999999999999998 78999999998754
No 69
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=68.18 E-value=3 Score=35.87 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=30.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.++++||+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~G--adgV~VGsal~~ 215 (232)
T 3igs_A 181 GCRVIAEGRYNSPALAAEAIRYG--AWAVTVGSAITR 215 (232)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTT--CSEEEECHHHHC
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCEEEEehHhcC
Confidence 5679999999 699999999998 899999999875
No 70
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=67.89 E-value=22 Score=33.95 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=34.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.||++||+ +...|.+....| .|+-.||+.+.-+...|.
T Consensus 359 ~iPVIa~GGI~~~~di~kala~G--A~~V~vGs~~~~~~es~g 399 (511)
T 3usb_A 359 GIPVIADGGIKYSGDMVKALAAG--AHVVMLGSMFAGVAESPG 399 (511)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTTTTBTTSSS
T ss_pred CCcEEEeCCCCCHHHHHHHHHhC--chhheecHHHhcCccCch
Confidence 4679999999 899999999889 788999999988776654
No 71
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=67.32 E-value=3.7 Score=37.37 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=34.0
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCC
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p 97 (254)
++.|++.||| |.+.+.++...| .|++.|||.+..+.+.+
T Consensus 208 ~iPViaaGGI~~~~~~~~~l~~G--Ad~V~vGs~~~~~~e~~ 247 (369)
T 3bw2_A 208 DIPVVAAGGIMRGGQIAAVLAAG--ADAAQLGTAFLATDESG 247 (369)
T ss_dssp SSCEEEESSCCSHHHHHHHHHTT--CSEEEESHHHHTSTTCC
T ss_pred CceEEEECCCCCHHHHHHHHHcC--CCEEEEChHHhCCcccC
Confidence 5679999999 999999999988 79999999999865543
No 72
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=67.00 E-value=3.2 Score=35.64 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=30.6
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.++++||+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~G--adgV~VGsai~~ 215 (229)
T 3q58_A 181 GCRVIAEGRYNTPALAANAIEHG--AWAVTVGSAITR 215 (229)
T ss_dssp TCCEEEESSCCSHHHHHHHHHTT--CSEEEECHHHHC
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchHhcC
Confidence 5679999999 699999999998 899999999875
No 73
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=65.95 E-value=16 Score=33.05 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=31.0
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+++.|+++||+ +.+.+.++.+ | +|+..||+.+..+.
T Consensus 196 ~~iPVianGgI~s~eda~~~l~-G--aD~V~iGRa~l~~P 232 (350)
T 3b0p_A 196 PQLTFVTNGGIRSLEEALFHLK-R--VDGVMLGRAVYEDP 232 (350)
T ss_dssp TTSEEEEESSCCSHHHHHHHHT-T--SSEEEECHHHHHCG
T ss_pred CCCeEEEECCcCCHHHHHHHHh-C--CCEEEECHHHHhCc
Confidence 36789999998 8899999887 7 89999999998743
No 74
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.38 E-value=2.1 Score=35.91 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++.+++.||++.+.+.++.+.| .++++||+.+....
T Consensus 143 ~~iPviaiGGI~~~nv~~~~~~G--a~gVav~s~i~~~~ 179 (210)
T 3ceu_A 143 IDSKVMALGGINEDNLLEIKDFG--FGGAVVLGDLWNKF 179 (210)
T ss_dssp SSTTEEEESSCCTTTHHHHHHTT--CSEEEESHHHHTTC
T ss_pred CCCCEEEECCCCHHHHHHHHHhC--CCEEEEhHHhHcCC
Confidence 36779999999999999999988 78999999997643
No 75
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=64.69 E-value=2.1 Score=37.34 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=33.0
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
++.|++-||++.+.+.++.+.| .|++.||+.+..+.+
T Consensus 191 ~iPvvAiGGI~~~ni~~~~~aG--a~gvav~sai~~a~d 227 (243)
T 3o63_A 191 DKPWFAIGGINAQRLPAVLDAG--ARRIVVVRAITSADD 227 (243)
T ss_dssp CCCEEEESSCCTTTHHHHHHTT--CCCEEESHHHHTCSS
T ss_pred CCCEEEecCCCHHHHHHHHHcC--CCEEEEeHHHhCCCC
Confidence 6789999999999999999999 889999999987543
No 76
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=64.53 E-value=23 Score=32.53 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|++.|+++.+.+.++++.|. +|..++|..++..
T Consensus 307 ~iPvi~~G~it~~~a~~~l~~g~-aD~V~igR~~l~~ 342 (379)
T 3aty_A 307 SGVKISNLRYDFEEADQQIREGK-VDAVAFGAKFIAN 342 (379)
T ss_dssp CSCEEEESSCCHHHHHHHHHTTS-CSEEEESHHHHHC
T ss_pred CCcEEEECCCCHHHHHHHHHcCC-CeEEEecHHHHhC
Confidence 45688999999899988888764 7889999888874
No 77
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=64.18 E-value=22 Score=30.26 Aligned_cols=36 Identities=8% Similarity=0.220 Sum_probs=27.5
Q ss_pred ceEEEEeCCCC---HHH----HHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN---EET----LDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld---e~~----i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+++||++ .+. +.++.+.| ++++.||+.+..+.
T Consensus 202 ~ipvva~GGi~~~~~~~~~~~~~~~~~~G--a~gv~vg~~i~~~~ 244 (273)
T 2qjg_A 202 PAPVVVAGGPKTNTDEEFLQMIKDAMEAG--AAGVAVGRNIFQHD 244 (273)
T ss_dssp SSCEEEECCSCCSSHHHHHHHHHHHHHHT--CSEEECCHHHHTSS
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHcC--CcEEEeeHHhhCCC
Confidence 46799999998 444 66666778 57999999998754
No 78
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=63.82 E-value=12 Score=31.47 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=30.8
Q ss_pred ceEEEEeCCCCH-HHHHHHhhc---CCcccEEeecCccccc
Q 025365 57 KMSITASNDLNE-ETLDALNKQ---GHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde-~~i~~l~~~---g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++. +.+.++.+. | +|++-||+.+...
T Consensus 190 ~ipvia~GGI~~~~d~~~~~~~~~~G--adgv~vG~al~~~ 228 (244)
T 1vzw_A 190 DRPVVASGGVSSLDDLRAIAGLVPAG--VEGAIVGKALYAK 228 (244)
T ss_dssp SSCEEEESCCCSHHHHHHHHTTGGGT--EEEEEECHHHHTT
T ss_pred CCCEEEECCCCCHHHHHHHHhhccCC--CceeeeeHHHHcC
Confidence 567999999995 999999987 7 8999999999864
No 79
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=62.64 E-value=12 Score=32.76 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=30.5
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++.|+++||+. .+.+.++...| .|..+|||.++.
T Consensus 243 ~~ipvi~~GGI~~~~da~~~l~~G--Ad~V~ig~~~l~ 278 (314)
T 2e6f_A 243 PDKLVFGCGGVYSGEDAFLHILAG--ASMVQVGTALQE 278 (314)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHHT--CSSEEECHHHHH
T ss_pred CCCCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhHh
Confidence 478899999995 88888888888 789999999985
No 80
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=62.24 E-value=5.1 Score=34.84 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|+++++++.||++++.+.++.+.|+ ++-++||.|+.
T Consensus 171 p~p~ip~~ptGGI~~~n~~~~l~aGa--~~~vgGs~l~~ 207 (232)
T 4e38_A 171 PYGDIRLMPTGGITPSNIDNYLAIPQ--VLACGGTWMVD 207 (232)
T ss_dssp TCTTCEEEEBSSCCTTTHHHHHTSTT--BCCEEECGGGC
T ss_pred HhcCCCeeeEcCCCHHHHHHHHHCCC--eEEEECchhcC
Confidence 57899999999999999999999885 44556777764
No 81
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=61.66 E-value=6.1 Score=33.82 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.++++++++.||++++.+.++.+.|. +++.| |+.|+..
T Consensus 154 ~~~~ipvvaiGGI~~~N~~~~l~agg-a~~v~-gS~i~~~ 191 (224)
T 1vhc_A 154 PYAQLQIMPTGGIGLHNIRDYLAIPN-IVACG-GSWFVEK 191 (224)
T ss_dssp TTTTCEEEEBSSCCTTTHHHHHTSTT-BCCEE-ECGGGCH
T ss_pred hCCCCeEEEECCcCHHHHHHHHhcCC-CEEEE-EchhcCc
Confidence 35689999999999999999998732 77888 8888763
No 82
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=61.46 E-value=5 Score=38.25 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCc-eEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEK-MSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~-vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
.++++.+.+|.+.|.++..|-.+.|+...+...+ +.+.+. +++ +.|++.+-.+.+.+..+.+.|+....-
T Consensus 241 ~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i-~~lk~~--------~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~V 311 (503)
T 1me8_A 241 RDFRERVPALVEAGADVLCIDSSDGFSEWQKITI-GWIREK--------YGDKVKVGAGNIVDGEGFRYLADAGADFIKI 311 (503)
T ss_dssp SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHH-HHHHHH--------HGGGSCEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHHHhhhccceEEecccCcccchhhHH-HHHHHh--------CCCCceEeeccccCHHHHHHHHHhCCCeEEe
Confidence 4567777788777888767767778875543333 444443 234 779999999999999999999875444
Q ss_pred eecC------cccccCCCCccceEEEEe
Q 025365 85 GIGT------YLVTCYAQAALGCVFKLV 106 (254)
Q Consensus 85 GVGT------~l~t~~~~p~l~~vyKlv 106 (254)
|+|. ..++..+.|.+..+..++
T Consensus 312 g~~~g~~~~~r~~~~~g~p~~~~l~~v~ 339 (503)
T 1me8_A 312 GIGGGSICITREQKGIGRGQATAVIDVV 339 (503)
T ss_dssp CSSCSTTCCSTTTTCCCCCHHHHHHHHH
T ss_pred cccCCcCcccccccCCCCchHHHHHHHH
Confidence 7743 223334556665555543
No 83
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=61.01 E-value=6.2 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.++++++++.||++++.+.++.+.|. +++.| |+.|+..
T Consensus 153 ~~~~ipvvaiGGI~~~n~~~~l~agg-~~~v~-gS~i~~~ 190 (214)
T 1wbh_A 153 PFSQVRFCPTGGISPANYRDYLALKS-VLCIG-GSWLVPA 190 (214)
T ss_dssp TCTTCEEEEBSSCCTTTHHHHHTSTT-BSCEE-EGGGSCH
T ss_pred hCCCCeEEEECCCCHHHHHHHHhcCC-CeEEE-eccccCh
Confidence 45689999999999999999998732 78888 8888763
No 84
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=60.59 E-value=29 Score=32.12 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEEcCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIK 115 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~K 115 (254)
++.|+++|+++.+.+.+++++|. +|..++|..++.. | +++.|+. +|.|..+
T Consensus 319 ~iPvi~~G~i~~~~a~~~l~~g~-aD~V~igR~~l~d---P--~l~~k~~--~g~~l~~ 369 (402)
T 2hsa_B 319 QGTFICSGGYTRELGIEAVAQGD-ADLVSYGRLFISN---P--DLVMRIK--LNAPLNK 369 (402)
T ss_dssp SSCEEEESSCCHHHHHHHHHTTS-CSEEEESHHHHHC---T--THHHHHH--HTCCCCC
T ss_pred CCCEEEeCCCCHHHHHHHHHCCC-CceeeecHHHHhC---c--hHHHHHH--hCCCCCC
Confidence 34599999999999999998764 7999999999874 3 4444443 4554443
No 85
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=60.12 E-value=5.7 Score=35.35 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=32.6
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCC
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~ 96 (254)
++.|+++||+ |.+.+.++...| .|+..|||.+..+...
T Consensus 172 ~iPviaaGGI~~~~~v~~al~~G--AdgV~vGs~~~~~~e~ 210 (328)
T 2gjl_A 172 RVPIIASGGFADGRGLVAALALG--ADAINMGTRFLATREC 210 (328)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHHHTSSSS
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEECHHHHcCccc
Confidence 5679999999 788998888888 7999999999987653
No 86
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=59.20 E-value=21 Score=32.51 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=29.7
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +...+.++...| .|+.+||+.++.
T Consensus 280 ~ipvia~GGI~~~~D~~k~l~~G--AdaV~iGr~~l~ 314 (370)
T 1gox_A 280 RIPVFLDGGVRRGTDVFKALALG--AAGVFIGRPVVF 314 (370)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHT--CSEEEECHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHcC--CCEEeecHHHHH
Confidence 6889999999 677888888889 799999998875
No 87
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=58.38 E-value=12 Score=32.15 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.3
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|++.||++ .+.+.++.+.| .|++-|||.++..
T Consensus 201 ~~pI~vgGGI~~~e~~~~~~~~G--AdgvvVGSai~~~ 236 (262)
T 1rd5_A 201 NKPVAVGFGISKPEHVKQIAQWG--ADGVIIGSAMVRQ 236 (262)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTT--CSEEEECHHHHHH
T ss_pred CCeEEEECCcCCHHHHHHHHHcC--CCEEEEChHHHhH
Confidence 56799999999 99999999988 7899999999874
No 88
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=58.08 E-value=7.7 Score=34.40 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=32.4
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCC
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~ 95 (254)
++.+++.+|+ +.+.+..+.+.| +|+|-||+.|+...+
T Consensus 220 ~~~vIaesGI~t~edv~~l~~~G--a~gvLVG~almr~~d 257 (272)
T 3tsm_A 220 DRLLVGESGIFTHEDCLRLEKSG--IGTFLIGESLMRQHD 257 (272)
T ss_dssp TSEEEEESSCCSHHHHHHHHTTT--CCEEEECHHHHTSSC
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCEEEEcHHHcCCcC
Confidence 5668888888 999999999999 899999999998643
No 89
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=57.76 E-value=4 Score=34.26 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=31.4
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|++.||++++.+.++.+.| .|++.||+.++..
T Consensus 166 ~~pi~v~GGI~~~~~~~~~~aG--Ad~vvvGsaI~~a 200 (218)
T 3jr2_A 166 GIELSITGGIVPEDIYLFEGIK--TKTFIAGRALAGA 200 (218)
T ss_dssp TCEEEEESSCCGGGGGGGTTSC--EEEEEESGGGSHH
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CCEEEEchhhcCC
Confidence 6779999999999999999888 8999999998864
No 90
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=56.44 E-value=11 Score=31.47 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=30.7
Q ss_pred ceEEEEeCCCCH-HHHHHHhhc---CCcccEEeecCccccc
Q 025365 57 KMSITASNDLNE-ETLDALNKQ---GHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde-~~i~~l~~~---g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++. +.+.++.+. | +|++-||+.+...
T Consensus 193 ~ipvia~GGI~~~~d~~~~~~~~~~G--ad~v~vG~al~~~ 231 (244)
T 2y88_A 193 DAPVIASGGVSSLDDLRAIATLTHRG--VEGAIVGKALYAR 231 (244)
T ss_dssp SSCEEEESCCCSHHHHHHHHTTGGGT--EEEEEECHHHHTT
T ss_pred CCCEEEECCCCCHHHHHHHHhhccCC--CCEEEEcHHHHCC
Confidence 567999999995 999999987 7 8999999999874
No 91
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=56.32 E-value=32 Score=32.73 Aligned_cols=41 Identities=7% Similarity=0.132 Sum_probs=34.3
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l 99 (254)
++.||++||+ +...|.+....| .|+..|||.++.+...|.-
T Consensus 334 ~iPVIa~GGI~~~~di~kala~G--Ad~V~iGs~f~~t~Espg~ 375 (496)
T 4fxs_A 334 GIPVIADGGIRFSGDISKAIAAG--ASCVMVGSMFAGTEEAPGE 375 (496)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTT--CSEEEESTTTTTBTTSSSC
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCeEEecHHHhcCCCCCcc
Confidence 4679999999 688999988889 5899999999987766643
No 92
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=56.24 E-value=16 Score=35.48 Aligned_cols=75 Identities=11% Similarity=0.278 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEe--e-CC-----------CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIR--L-DS-----------GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEE 69 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVR--l-DS-----------GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~ 69 (254)
...++.++++|.+.|..+..|- . +. ++...+.+++| ++ -++.|++.|++ +.+
T Consensus 227 ~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~---------~~iPvi~~Ggi~~~~ 293 (671)
T 1ps9_A 227 FAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLK----GH---------VSLPLVTTNRINDPQ 293 (671)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHT----TS---------CSSCEEECSSCCSHH
T ss_pred HHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHH----Hh---------cCceEEEeCCCCCHH
Confidence 4678999999998887765442 1 10 11122222222 21 25669999999 899
Q ss_pred HHHHHhhcCCcccEEeecCccccc
Q 025365 70 TLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 70 ~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.+.++.+.|. +|..++|..++..
T Consensus 294 ~a~~~l~~g~-aD~V~~gR~~l~~ 316 (671)
T 1ps9_A 294 VADDILSRGD-ADMVSMARPFLAD 316 (671)
T ss_dssp HHHHHHHTTS-CSEEEESTHHHHC
T ss_pred HHHHHHHcCC-CCEEEeCHHHHhC
Confidence 9999998764 7899999988764
No 93
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=54.80 E-value=8 Score=33.33 Aligned_cols=37 Identities=8% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+++++++++||+|++.+.++.+.|+ ...+.|+.|+.
T Consensus 156 p~p~i~~~ptGGI~~~N~~~~l~aGa--~~~vgGs~l~~ 192 (217)
T 3lab_A 156 PFPDIQFCPTGGISKDNYKEYLGLPN--VICAGGSWLTE 192 (217)
T ss_dssp TCTTCEEEEBSSCCTTTHHHHHHSTT--BCCEEESGGGC
T ss_pred hhcCceEEEeCCCCHHHHHHHHHCCC--EEEEEChhhcC
Confidence 57899999999999999999999985 33344555543
No 94
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=54.52 E-value=30 Score=26.86 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=38.9
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC--CH---H-HHHHHhhcCCcccEEeecCccc
Q 025365 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NE---E-TLDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 19 G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l--de---~-~i~~l~~~g~~id~fGVGT~l~ 91 (254)
+..+.|+=.=++.-....+++.+.|+++ |.++++|++.|.. .. . .-..+.+.|+ -..|+.||...
T Consensus 54 ~~d~v~lS~~~~~~~~~~~~~i~~l~~~-------g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~-d~~~~~g~~~~ 124 (137)
T 1ccw_A 54 KADAILVSSLYGQGEIDCKGLRQKCDEA-------GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGY-DRVYAPGTPPE 124 (137)
T ss_dssp TCSEEEEEECSSTHHHHHTTHHHHHHHT-------TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTC-SEECCTTCCHH
T ss_pred CCCEEEEEecCcCcHHHHHHHHHHHHhc-------CCCCCEEEEECCCcCchHhhhhhHHHHHHCCC-CEEECCCCCHH
Confidence 3344444444455455566677777776 7777889988864 11 1 1344666775 34567887654
No 95
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=53.61 E-value=8.7 Score=33.94 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=28.9
Q ss_pred EEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 60 ITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 60 I~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++++||+ +.+.+.++.+.| .|++.||+.+..+.
T Consensus 212 ~~a~GGI~~~~d~~~~~~~G--adgV~vGsai~~~~ 245 (305)
T 2nv1_A 212 NFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSD 245 (305)
T ss_dssp EEBCSCCCSHHHHHHHHHTT--CSCEEECGGGGGSS
T ss_pred EEeccCCCCHHHHHHHHHcC--CCEEEEcHHHHcCC
Confidence 3499999 999999999888 79999999998754
No 96
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=53.60 E-value=17 Score=31.86 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+.+-+.+|..+ ..+|++-||+.-..
T Consensus 184 evh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 238 (250)
T 1yya_A 184 AMHQAIRKALSER---YGEAFASRVRILYGGSVNPKNFADLLSM-PNVDGGLVGGASLE 238 (250)
T ss_dssp HHHHHHHHHHHHH---HCHHHHTTCEEEEESSCCTTTHHHHHTS-TTCCEEEESGGGSS
T ss_pred HHHHHHHHHHHHh---cCccccCceeEEEcCCCCHHHHHHHHcC-CCCCeeEeeHHHhC
Confidence 3444467776653 1110014799999999999999999976 23999999987654
No 97
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=53.50 E-value=2.8 Score=35.70 Aligned_cols=36 Identities=25% Similarity=0.176 Sum_probs=0.0
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+++||+. .+.+.++.+.| +|+.-||+.+....
T Consensus 200 ~iPvia~GGI~~~~d~~~~~~~G--ad~v~vg~al~~~p 236 (247)
T 3tdn_A 200 TLPIIASGGAGKMEHFLEAFLRG--ADKVSINTAAVENP 236 (247)
T ss_dssp ---------------------------------------
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CcHhhccHHHHcCc
Confidence 56799999997 99999999988 88999999998743
No 98
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=53.40 E-value=9.4 Score=34.13 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.8
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~ 96 (254)
++.|+++||++ .+.+.++...| .|+..|||.+..+...
T Consensus 162 ~iPViaaGGI~~~~~~~~al~~G--AdgV~vGs~~l~~~e~ 200 (332)
T 2z6i_A 162 SIPVIAAGGIADGEGAAAGFMLG--AEAVQVGTRFVVAKES 200 (332)
T ss_dssp SSCEEEESSCCSHHHHHHHHHTT--CSEEEECHHHHTBTTC
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEecHHHhcCccc
Confidence 46799999997 99999988888 7999999999987644
No 99
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=53.25 E-value=13 Score=34.23 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=30.5
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++|+++.+.+.+++++|. +|..++|..++..
T Consensus 301 ~iPvi~~G~i~~~~a~~~l~~g~-aD~V~~gR~~l~~ 336 (376)
T 1icp_A 301 KGTFIVAGGYDREDGNRALIEDR-ADLVAYGRLFISN 336 (376)
T ss_dssp CSCEEEESSCCHHHHHHHHHTTS-CSEEEESHHHHHC
T ss_pred CCCEEEeCCCCHHHHHHHHHCCC-CcEEeecHHHHhC
Confidence 35699999999999999988764 7999999998874
No 100
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=52.90 E-value=9 Score=34.31 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=32.8
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~ 96 (254)
++.|+++||+. .+.+.++...| .|+..|||.+..+...
T Consensus 176 ~iPviaaGGI~~~~dv~~al~~G--A~gV~vGs~~~~~~e~ 214 (326)
T 3bo9_A 176 NIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFVASVES 214 (326)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHHHTBSSC
T ss_pred CCCEEEECCCCCHHHHHHHHHhC--CCEEEechHHHcCccc
Confidence 46699999997 99999998888 7999999999987654
No 101
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=52.89 E-value=33 Score=28.18 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld 67 (254)
|+-.++..|.+.|+.+..+++=.-|...+...+++.+++ .++ |+.|||+.
T Consensus 24 N~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~----------~Dl-VittGG~g 73 (172)
T 3kbq_A 24 NAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV----------SDL-VVSSGGLG 73 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH----------CSE-EEEESCCS
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc----------CCE-EEEcCCCc
Confidence 666778888888988766665455666666667776665 366 77887664
No 102
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=52.46 E-value=33 Score=30.58 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=30.4
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.++.|+++||+. ...+.+....| .|+.+||+.++..
T Consensus 250 ~~ipvia~GGI~~~~d~~k~l~~G--Ad~V~iG~~~l~~ 286 (349)
T 1p0k_A 250 PASTMIASGGLQDALDVAKAIALG--ASCTGMAGHFLKA 286 (349)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHcC--CCEEEEcHHHHHH
Confidence 468899999985 88888887788 7999999988763
No 103
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=51.85 E-value=27 Score=30.93 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=29.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +.+.+.++...| .|..+|||.++.
T Consensus 289 ~ipVi~~GGI~~~~da~~~l~~G--Ad~V~igr~~l~ 323 (336)
T 1f76_A 289 RLPIIGVGGIDSVIAAREKIAAG--ASLVQIYSGFIF 323 (336)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEeeHHHHh
Confidence 5779999998 578888888889 799999998764
No 104
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=51.47 E-value=40 Score=28.10 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcCCCccEEe-eCCC--ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCccc
Q 025365 7 NFCAVALALNDLGYKAVGIR-LDSG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVD 82 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVR-lDSG--Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id 82 (254)
+.+++++++.+.|....-++ ++.+ ........++++- +. .++.|+++|+++ .+.+.++.+.| +|
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~---------~~iPvi~~Ggi~~~~~~~~~~~~G--ad 99 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVA-ER---------VFIPLTVGGGVRSLEDARKLLLSG--AD 99 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHH-TT---------CCSCEEEESSCCSHHHHHHHHHHT--CS
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHH-Hh---------CCCCEEEECCcCCHHHHHHHHHcC--CC
Confidence 57788999888887755555 1211 1111122222222 21 356799999997 78889998888 89
Q ss_pred EEeecCccccc
Q 025365 83 AFGIGTYLVTC 93 (254)
Q Consensus 83 ~fGVGT~l~t~ 93 (254)
..-+|+.+...
T Consensus 100 ~V~lg~~~l~~ 110 (252)
T 1ka9_F 100 KVSVNSAAVRR 110 (252)
T ss_dssp EEEECHHHHHC
T ss_pred EEEEChHHHhC
Confidence 99999988763
No 105
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=51.03 E-value=1.2e+02 Score=28.13 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=32.8
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCC
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p 97 (254)
.++.||+|||+ +...+.++...| .|+-+||+.+..+...|
T Consensus 335 ~~ipvia~GGi~~~~di~kal~~G--A~~v~vG~~~~~~~e~~ 375 (491)
T 1zfj_A 335 YGKTIIADGGIKYSGDIVKALAAG--GNAVMLGSMFAGTDEAP 375 (491)
T ss_dssp TTCEEEEESCCCSHHHHHHHHHTT--CSEEEESTTTTTBSSCC
T ss_pred cCCCEEeeCCCCCHHHHHHHHHcC--CcceeeCHHhhCCCcCc
Confidence 35789999997 688888888888 88899999998765544
No 106
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=50.27 E-value=33 Score=34.78 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=44.0
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCccc-EEeecCcccc
Q 025365 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD-AFGIGTYLVT 92 (254)
Q Consensus 17 ~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id-~fGVGT~l~t 92 (254)
+.+..+.|+=-=.+.-..+..++.+.|+++ |..+++|++.|-.=......+.+.| +| .|+.||.+..
T Consensus 653 e~~adiVglSsl~~~~~~~~~~vi~~Lr~~-------G~~dv~VivGG~~P~~d~~~l~~~G--aD~~f~pgtd~~e 720 (762)
T 2xij_A 653 DADVHAVGVSTLAAGHKTLVPELIKELNSL-------GRPDILVMCGGVIPPQDYEFLFEVG--VSNVFGPGTRIPK 720 (762)
T ss_dssp HTTCSEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTSEEEEEESCCGGGHHHHHHHT--CCEEECTTCCHHH
T ss_pred HcCCCEEEEeeecHHHHHHHHHHHHHHHhc-------CCCCCEEEEeCCCCcccHHHHHhCC--CCEEeCCCCCHHH
Confidence 445555565433344456678888888887 8888989998833333445566677 44 4788987755
No 107
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=50.22 E-value=44 Score=27.84 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeC-------CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhc-
Q 025365 7 NFCAVALALNDLGYKAVGIRLD-------SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQ- 77 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlD-------SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~- 77 (254)
+..+.++++.+.|.....+ .+ +|--..+.+++++. .++.|+++||+. .+.+.++.+.
T Consensus 145 ~~~e~~~~~~~~G~~~i~~-t~~~~~g~~~g~~~~~i~~l~~~-------------~~iPvia~GGI~~~~d~~~~~~~~ 210 (241)
T 1qo2_A 145 DPVSLLKRLKEYGLEEIVH-TEIEKDGTLQEHDFSLTKKIAIE-------------AEVKVLAAGGISSENSLKTAQKVH 210 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEE-EETTHHHHTCCCCHHHHHHHHHH-------------HTCEEEEESSCCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCEEEE-EeecccccCCcCCHHHHHHHHHh-------------cCCcEEEECCCCCHHHHHHHHhcc
Confidence 4567777777777765444 22 22112222333322 256799999999 5999999876
Q ss_pred ----CCcccEEeecCcccccC
Q 025365 78 ----GHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 78 ----g~~id~fGVGT~l~t~~ 94 (254)
|. +|+.=||+.+....
T Consensus 211 ~~~~G~-adgv~vgsal~~~~ 230 (241)
T 1qo2_A 211 TETNGL-LKGVIVGRAFLEGI 230 (241)
T ss_dssp HHTTTS-EEEEEECHHHHTTS
T ss_pred cccCCe-EeEEEeeHHHHcCC
Confidence 52 68889999998753
No 108
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=49.66 E-value=22 Score=29.79 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=30.5
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|+++||+. .+.+.++.+.| +|++=||+.+....
T Consensus 196 ~ipvia~GGI~~~~d~~~~~~~G--adgv~vgsal~~~~ 232 (252)
T 1ka9_F 196 GVPVIASGGAGRMEHFLEAFQAG--AEAALAASVFHFGE 232 (252)
T ss_dssp SSCEEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTTS
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CHHHHHHHHHHcCC
Confidence 56699999999 59999998777 78999999998753
No 109
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=49.45 E-value=33 Score=32.04 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhh-cCCCccEEeeCCCC---------------hHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-C
Q 025365 5 VPNFCAVALALND-LGYKAVGIRLDSGD---------------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-N 67 (254)
Q Consensus 5 v~nai~va~~l~~-~G~~~~gVRlDSGD---------------l~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-d 67 (254)
+..++.++++|.+ .|..+. =+-+|+ ...++.++|+.+. .++.|++.|++ +
T Consensus 263 ~ed~~~la~~L~~~~Gvd~I--~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~-----------~~iPVI~~GgI~t 329 (419)
T 3l5a_A 263 IDEFNQLIDWVMDVSNIQYL--AIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLA-----------GRIPLIASGGINS 329 (419)
T ss_dssp HHHHHHHHHHHHHHSCCCCE--EECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHT-----------TSSCEEECSSCCS
T ss_pred HHHHHHHHHHHHhhcCCcEE--EEeeCCccccccccCCCCccccHHHHHHHHHHcC-----------CCCeEEEECCCCC
Confidence 5677888888887 775432 222221 1123344443331 24668999996 7
Q ss_pred HHHHHHHhhcCCcccEEeecCccccc
Q 025365 68 EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 68 e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.+.+.++++. +|..++|..++..
T Consensus 330 ~e~Ae~~L~~---aDlVaiGR~~Ian 352 (419)
T 3l5a_A 330 PESALDALQH---ADMVGMSSPFVTE 352 (419)
T ss_dssp HHHHHHHGGG---CSEEEESTHHHHC
T ss_pred HHHHHHHHHh---CCcHHHHHHHHHC
Confidence 8899998877 8999999999874
No 110
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=48.82 E-value=23 Score=31.24 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. +.+. -.+++|+..|+.+..-+.+|..+ ..||++-||+.-..
T Consensus 188 evh~~IR~~l~~~~~~~~----a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 242 (257)
T 2yc6_A 188 EVHVGLRKWFVEKVAAEG----AQHIRIIYGGSANGSNNEKLGQC-PNIDGFLVGGASLK 242 (257)
T ss_dssp HHHHHHHHHHHHHHHHHH----HTTCEEEEESSCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHhcChhh----cccceEEEcCccCHHHHHHHHcC-CCCCeeeecHHHHH
Confidence 3444467776553 1111 14799999999999999999976 23999999987654
No 111
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=48.54 E-value=1.5e+02 Score=26.61 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=33.4
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.||++||+. ...|.+.+..| .|+-+|||.++.+...|.
T Consensus 223 ~ipvIa~GGI~~g~di~kAlalG--A~~V~vG~~fl~~~Es~~ 263 (351)
T 2c6q_A 223 KGHIISDGGCSCPGDVAKAFGAG--ADFVMLGGMLAGHSESGG 263 (351)
T ss_dssp TCEEEEESCCCSHHHHHHHHHTT--CSEEEESTTTTTBTTSCS
T ss_pred CCcEEEeCCCCCHHHHHHHHHcC--CCceeccHHHhcCccCcc
Confidence 47799999986 88899998999 789999999998765554
No 112
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=48.47 E-value=25 Score=30.15 Aligned_cols=37 Identities=3% Similarity=-0.011 Sum_probs=29.1
Q ss_pred CceEEEEeCCCCHHHHHHHh-hcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALN-KQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~-~~g~~id~fGVGT~l~t~~ 94 (254)
++++|+..||++.....++. ..| +|+|-||+.+....
T Consensus 175 ~~~~ilyggsV~~~n~~~~~~~~~--vDG~LVG~a~l~a~ 212 (225)
T 1hg3_A 175 PEVKVLCGAGISTGEDVKKAIELG--TVGVLLASGVTKAK 212 (225)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHTT--CSEEEESHHHHTCS
T ss_pred CCCEEEEeCCCCcHHHHHHHHhCC--CCEEEeCHHHHCCc
Confidence 57899999999965555554 455 99999999998753
No 113
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=48.29 E-value=91 Score=26.10 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChH-HHH-HHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccE
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLA-YLS-CEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~-~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~ 83 (254)
+...+++.+.+.|. .+|+..+|--. -.+ ..++.+.+.. + .++.|++|||+. .+.+.++.+.|+. .
T Consensus 133 ~~~~~a~~a~eaGa--d~I~tstg~~~gga~~~~i~~v~~~v-------~-~~ipVia~GGI~t~~da~~~l~aGA~--~ 200 (225)
T 1mzh_A 133 EIKKAVEICIEAGA--DFIKTSTGFAPRGTTLEEVRLIKSSA-------K-GRIKVKASGGIRDLETAISMIEAGAD--R 200 (225)
T ss_dssp HHHHHHHHHHHHTC--SEEECCCSCSSSCCCHHHHHHHHHHH-------T-TSSEEEEESSCCSHHHHHHHHHTTCS--E
T ss_pred HHHHHHHHHHHhCC--CEEEECCCCCCCCCCHHHHHHHHHHh-------C-CCCcEEEECCCCCHHHHHHHHHhCch--H
Confidence 45666777677775 46677764200 001 1122222222 1 368899999985 6777777778854 4
Q ss_pred Eeec
Q 025365 84 FGIG 87 (254)
Q Consensus 84 fGVG 87 (254)
+|++
T Consensus 201 iG~s 204 (225)
T 1mzh_A 201 IGTS 204 (225)
T ss_dssp EEES
T ss_pred HHHc
Confidence 4544
No 114
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=48.11 E-value=40 Score=30.02 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHhhcCCCccEEee--C-CCChHHHHHHHHHHHHHHhHhhCCCCCCceE-EEEeCCCCH----HHHHHHhhcCCcccE
Q 025365 12 ALALNDLGYKAVGIRL--D-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMS-ITASNDLNE----ETLDALNKQGHEVDA 83 (254)
Q Consensus 12 a~~l~~~G~~~~gVRl--D-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vk-I~~S~~lde----~~i~~l~~~g~~id~ 83 (254)
++++.++|..+.++=. | +|++..+..-++. ++.. ..+. |+++||+++ +.+....+.| .++
T Consensus 183 a~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~-~~~~---------~~~P~Vv~aGG~~~~~~~~~~~~a~~aG--a~G 250 (304)
T 1to3_A 183 AKELGDSGADLYKVEMPLYGKGARSDLLTASQR-LNGH---------INMPWVILSSGVDEKLFPRAVRVAMEAG--ASG 250 (304)
T ss_dssp HHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHH-HHHT---------CCSCEEECCTTSCTTTHHHHHHHHHHTT--CCE
T ss_pred HHHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHh-cccc---------CCCCeEEEecCCCHHHHHHHHHHHHHcC--CeE
Confidence 5555667766655544 1 2565444443333 4432 3556 999999988 4577777777 599
Q ss_pred EeecCccccc
Q 025365 84 FGIGTYLVTC 93 (254)
Q Consensus 84 fGVGT~l~t~ 93 (254)
|-||.++...
T Consensus 251 v~vGRaI~q~ 260 (304)
T 1to3_A 251 FLAGRAVWSS 260 (304)
T ss_dssp EEESHHHHGG
T ss_pred EEEehHHhCc
Confidence 9999999875
No 115
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=47.63 E-value=14 Score=33.72 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=28.7
Q ss_pred CCCceEEEEeCCCCH-----------HHHHHHhhcCCcccEEeecCccccc
Q 025365 54 DFEKMSITASNDLNE-----------ETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 54 g~~~vkI~~S~~lde-----------~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
+-++++++.. +.|. +.++.|.++|.|||+.|+=+|+...
T Consensus 170 ~dP~a~L~~N-DYn~e~~~~k~~~~~~lv~~l~~~gvpidgiG~Q~H~~~~ 219 (335)
T 4f8x_A 170 GANDVKLYYN-DYGIENPGTKSTAVLQLVSNLRKRGIRIDGVGLESHFIVG 219 (335)
T ss_dssp TCTTSEEEEE-ESSCSSSSHHHHHHHHHHHHHHHTTCCCCEEEECCEEETT
T ss_pred CCCCcEEEEe-cccccCCcHhHHHHHHHHHHHHHCCCCcceeeeeeeecCC
Confidence 4578887774 4332 2456677799999999999999764
No 116
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=47.37 E-value=35 Score=26.79 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=26.1
Q ss_pred CCCceEEEEeCCCCHHH------HHHHhhcCCcccEEeecCcc
Q 025365 54 DFEKMSITASNDLNEET------LDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 54 g~~~vkI~~S~~lde~~------i~~l~~~g~~id~fGVGT~l 90 (254)
+..++-|++|+|.+... +..+.+.|..+.++|||...
T Consensus 121 ~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~~ 163 (178)
T 2xgg_A 121 HVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHYV 163 (178)
T ss_dssp TSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC---
T ss_pred CCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 44677799999986554 55666789889999999764
No 117
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=46.41 E-value=31 Score=29.66 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=29.1
Q ss_pred CceEEEEeCCCCHHHHHHH-hhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDAL-NKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l-~~~g~~id~fGVGT~l~t~~ 94 (254)
.+++|+..||++.....++ ...| +|+|-||+.+....
T Consensus 172 ~~~~ilyggsV~~~n~~~~~~~~g--iDG~LVG~a~l~a~ 209 (226)
T 1w0m_A 172 PEVSVITGAGIESGDDVAAALRLG--TRGVLLASAAVKAK 209 (226)
T ss_dssp TTSEEEEESSCCSHHHHHHHHHTT--CSEEEECHHHHTCS
T ss_pred CCCEEEEeCCCCcHHHHHHHHhCC--CCEEEECHHHHCCc
Confidence 5789999999996555555 4455 99999999998754
No 118
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=45.98 E-value=51 Score=27.43 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcccEEe
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~id~fG 85 (254)
+.+++++++.+.|....-|+--+++..... ...+.+.+... ..++.|++.|+++ .+.+.++.+.| +|..-
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~-~~~~~i~~i~~------~~~ipvi~~ggI~~~~~~~~~~~~G--ad~V~ 101 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDITASVEKRK-TMLELVEKVAE------QIDIPFTVGGGIHDFETASELILRG--ADKVS 101 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHHH-HHHHHHHHHHT------TCCSCEEEESSCCSHHHHHHHHHTT--CSEEE
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhcCCc-ccHHHHHHHHH------hCCCCEEEeCCCCCHHHHHHHHHcC--CCEEE
Confidence 578888999888877656664343321111 11122222211 1356788888887 56688888888 78888
Q ss_pred ecCccccc
Q 025365 86 IGTYLVTC 93 (254)
Q Consensus 86 VGT~l~t~ 93 (254)
+|+.+...
T Consensus 102 lg~~~l~~ 109 (253)
T 1thf_D 102 INTAAVEN 109 (253)
T ss_dssp ESHHHHHC
T ss_pred EChHHHhC
Confidence 99987763
No 119
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=45.80 E-value=11 Score=33.75 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=30.6
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 58 vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+-+++.||+ +.+.+..+.+.| .|++-||+.|..+.
T Consensus 210 VivvA~GGI~t~~dv~~~~~~G--AdgVlVGsai~~a~ 245 (297)
T 4adt_A 210 VVNFAAGGIATPADAAMCMQLG--MDGVFVGSGIFESE 245 (297)
T ss_dssp SEEEEESCCCSHHHHHHHHHTT--CSCEEESHHHHTSS
T ss_pred eEEEecCCCCCHHHHHHHHHcC--CCEEEEhHHHHcCC
Confidence 435699999 999999999999 89999999999854
No 120
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=45.52 E-value=1.2e+02 Score=26.66 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCC-hHHH--HHHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCcc
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGD-LAYL--SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEV 81 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGD-l~~l--s~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~i 81 (254)
...++.++++.+.|.+ .|-+=+|+ +.+. ...+.++++....+++ +.|.+| |-++++.+..|.+.| +
T Consensus 94 eei~~~~~~~~~~G~~--~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~------i~i~~s~g~~~~e~l~~L~~aG--~ 163 (350)
T 3t7v_A 94 EEIKETCKTLKGAGFH--MVDLTMGEDPYYYEDPNRFVELVQIVKEELG------LPIMISPGLMDNATLLKAREKG--A 163 (350)
T ss_dssp HHHHHHHHHHTTSCCS--EEEEEECCCHHHHHSTHHHHHHHHHHHHHHC------SCEEEECSSCCHHHHHHHHHTT--E
T ss_pred HHHHHHHHHHHHCCCC--EEEEeeCCCCccccCHHHHHHHHHHHHhhcC------ceEEEeCCCCCHHHHHHHHHcC--C
Confidence 3456666666666654 55565666 5443 3455666666544343 235556 458999999999998 6
Q ss_pred cEEeec
Q 025365 82 DAFGIG 87 (254)
Q Consensus 82 d~fGVG 87 (254)
+.+.+|
T Consensus 164 ~~i~i~ 169 (350)
T 3t7v_A 164 NFLALY 169 (350)
T ss_dssp EEEECC
T ss_pred CEEEEe
Confidence 777665
No 121
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=43.77 E-value=39 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=27.6
Q ss_pred CCCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecCcc
Q 025365 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 54 g~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT~l 90 (254)
+.+++-|++|+|-+- ..+..+.+.|..+-++|||...
T Consensus 124 ~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~ 166 (266)
T 4hqo_A 124 KAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGI 166 (266)
T ss_dssp TSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSC
T ss_pred CCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCccc
Confidence 445777999998742 3455666789899999999854
No 122
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.51 E-value=54 Score=27.39 Aligned_cols=62 Identities=15% Similarity=-0.011 Sum_probs=39.3
Q ss_pred HhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+.-...++ +|.......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 29 a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--------~vdgi-ii~~~~~~~~~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 29 AEELKVDLQILAPPGANDVPKQVQFIESALAT--------YPSGI-ATTIPSDTAFSKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHTCEEEEECCSSSCCHHHHHHHHHHHHHT--------CCSEE-EECCCCSSTTHHHHHHHHHHTCCEEEES
T ss_pred HHHhCcEEEEECCCCcCCHHHHHHHHHHHHHc--------CCCEE-EEeCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 455688775444344 4876666666655554 33333 66565666 778888988898876664
No 123
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=43.48 E-value=31 Score=30.25 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+.+-+.+|..+ ..||++-||+.-..
T Consensus 184 evh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 238 (252)
T 2btm_A 184 SVCGHIRSVVSRL---FGPEAAEAIRIQYGGSVKPDNIRDFLAQ-QQIDGALVGGASLE 238 (252)
T ss_dssp HHHHHHHHHHHHH---HCHHHHTTSEEEEESSCCTTTHHHHHTS-TTCCEEEESGGGSS
T ss_pred HHHHHHHHHHHHh---cCccccCceeEEEcCCCCHHHHHHHHcC-CCCCeeEecHHHhC
Confidence 3444467776653 1100014799999999999999999864 34999999987665
No 124
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=43.43 E-value=24 Score=32.44 Aligned_cols=89 Identities=25% Similarity=0.272 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCccEEeeC--CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 7 NFCAVALALNDLGYKAVGIRLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlD--SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~f 84 (254)
...+.++++.+.|..+ |=+| -|....+. +..+.+.++ ++++.|++.+-.+.+.+..+.+.|+.....
T Consensus 100 ~~~e~~~~a~~aGvdv--I~id~a~G~~~~~~-e~I~~ir~~--------~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 100 NELQRAEALRDAGADF--FCVDVAHAHAKYVG-KTLKSLRQL--------LGSRCIMAGNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHHHTTCCE--EEEECSCCSSHHHH-HHHHHHHHH--------HTTCEEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCE--EEEeCCCCCcHhHH-HHHHHHHHh--------cCCCeEEEcCcCCHHHHHHHHHcCCCEEEE
Confidence 4566777777888764 5555 36543322 233334433 146778887888999999999999654343
Q ss_pred eecC--cccc----cCCCCccceEEEEe
Q 025365 85 GIGT--YLVT----CYAQAALGCVFKLV 106 (254)
Q Consensus 85 GVGT--~l~t----~~~~p~l~~vyKlv 106 (254)
|+|. ...| ..+.|.+..+++++
T Consensus 169 g~g~G~~~~tr~~~g~g~p~l~aI~~~~ 196 (361)
T 3r2g_A 169 GIGGGSVCSTRIKTGFGVPMLTCIQDCS 196 (361)
T ss_dssp CCSSSSCHHHHHHHCCCCCHHHHHHHHT
T ss_pred cCCCCcCccccccCCccHHHHHHHHHHH
Confidence 4442 2211 23456565555444
No 125
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=43.42 E-value=28 Score=29.24 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=30.4
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.|++.||++ .+.+..+.+.| +|++=||+.++...
T Consensus 170 ~~~ii~ggGI~~~~~~~~~~~~g--aDgvlVGsAi~~~~ 206 (219)
T 2h6r_A 170 DVKVLCGAGISKGEDVKAALDLG--AEGVLLASGVVKAK 206 (219)
T ss_dssp TCEEEECSSCCSHHHHHHHHTTT--CCCEEESHHHHTCS
T ss_pred CCeEEEEeCcCcHHHHHHHhhCC--CCEEEEcHHHhCcc
Confidence 68899999998 57777787777 89999999998754
No 126
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=43.07 E-value=18 Score=31.79 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+.+.+. -.+++|+..|+.+.+-+.+|..+ ..||++-||+.-..
T Consensus 187 evh~~IR~~l~~~~~~~----a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 240 (256)
T 1aw2_A 187 RIHAQIRAHIAEKSEAV----AKNVVIQYGGSVKPENAAAYFAQ-PDIDGALVGGAALD 240 (256)
T ss_dssp HHHHHHHHHHHTTCHHH----HHHCEEEECSCCCTTTHHHHTTS-TTCCEEEESGGGGC
T ss_pred HHHHHHHHHHHhcChhh----cccccEEEcCCCCHHHHHHHHcC-CCCCeeeecHHHhC
Confidence 33444666665421100 14689999999999999999876 23999999987665
No 127
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=42.68 E-value=1e+02 Score=26.40 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFF 43 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~l 43 (254)
...++.++++|-+.|.+..=||+.|.+-....+++++.+
T Consensus 45 ~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~ 83 (232)
T 4e38_A 45 AEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQ 83 (232)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC
Confidence 356889999999999998888888888555555554443
No 128
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=41.74 E-value=69 Score=29.16 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=46.0
Q ss_pred HHHHHHHhhcCCCccEE------eeCCCChH-HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCc
Q 025365 9 CAVALALNDLGYKAVGI------RLDSGDLA-YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHE 80 (254)
Q Consensus 9 i~va~~l~~~G~~~~gV------RlDSGDl~-~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~ 80 (254)
.+.|+.+.+.|.....| .+|+|-.. ....++++ .. + .++.||++||+. ...+.+.+..|
T Consensus 240 ~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~---~v-------~-~~ipVia~GGI~~g~D~~kalalG-- 306 (368)
T 2nli_A 240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAE---RV-------N-KRVPIVFDSGVRRGEHVAKALASG-- 306 (368)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHH---HH-------T-TSSCEEECSSCCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHH---Hh-------C-CCCeEEEECCCCCHHHHHHHHHcC--
Confidence 45677777778765555 36766432 22222332 22 1 257799999984 56777777788
Q ss_pred ccEEeecCcccc
Q 025365 81 VDAFGIGTYLVT 92 (254)
Q Consensus 81 id~fGVGT~l~t 92 (254)
.|+.+||+.+..
T Consensus 307 Ad~V~iGr~~l~ 318 (368)
T 2nli_A 307 ADVVALGRPVLF 318 (368)
T ss_dssp CSEEEECHHHHH
T ss_pred CCEEEECHHHHH
Confidence 799999997765
No 129
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=41.41 E-value=12 Score=32.02 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=31.8
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+..|.+-||++++.+..+.+.| .|.|=+|+.+..+.
T Consensus 169 ~~~I~VdGGI~~~t~~~~~~aG--Ad~~VvGsaIf~a~ 204 (228)
T 3ovp_A 169 SLDIEVDGGVGPDTVHKCAEAG--ANMIVSGSAIMRSE 204 (228)
T ss_dssp TCEEEEESSCSTTTHHHHHHHT--CCEEEESHHHHTCS
T ss_pred CCCEEEeCCcCHHHHHHHHHcC--CCEEEEeHHHhCCC
Confidence 5779999999999999999999 78888999888754
No 130
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=41.18 E-value=17 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=30.3
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||++ .+.+.++.+.| +|++=||+.+...
T Consensus 195 ~ipvia~GGI~~~~d~~~~~~~G--adgv~vGsal~~~ 230 (253)
T 1thf_D 195 TLPIIASGGAGKMEHFLEAFLAG--ADAALAASVFHFR 230 (253)
T ss_dssp CSCEEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTT
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--ChHHHHHHHHHcC
Confidence 56799999999 59999998877 7899999999874
No 131
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=40.88 E-value=65 Score=28.84 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=30.7
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|++.||+ +.+.++++.+.| .|...|||.++..
T Consensus 227 ~iPV~vGGGIrs~Eda~~ll~aG--AD~VVVGSAav~d 262 (286)
T 3vk5_A 227 DQVLFVSGNVRSGRQVTEYLDSG--ADYVGFAGALEQP 262 (286)
T ss_dssp TCEEEEESSCCSHHHHHHHHHTT--CSEEEESGGGSST
T ss_pred CCCEEEEeCCCCHHHHHHHHHcC--CCEEEECchhhcC
Confidence 6789999998 678888899988 8999999999874
No 132
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=40.55 E-value=75 Score=28.12 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=28.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.|+++||+ +...+.+.+..| .|+.+||+.++.
T Consensus 256 ~ipvia~GGI~~~~d~~kal~~G--Ad~V~igr~~l~ 290 (332)
T 1vcf_A 256 HLPLVASGGVYTGTDGAKALALG--ADLLAVARPLLR 290 (332)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHT--CSEEEECGGGHH
T ss_pred CCeEEEECCCCCHHHHHHHHHhC--CChHhhhHHHHH
Confidence 5779999998 567777777788 699999998875
No 133
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=40.18 E-value=85 Score=28.62 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=28.4
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.||++||+ +.+.+.++...| .|...|||.++-
T Consensus 298 ~ipvI~~GGI~s~~da~~~l~~G--Ad~V~vgra~l~ 332 (367)
T 3zwt_A 298 RVPIIGVGGVSSGQDALEKIRAG--ASLVQLYTALTF 332 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHT--CSEEEESHHHHH
T ss_pred CceEEEECCCCCHHHHHHHHHcC--CCEEEECHHHHh
Confidence 6789999998 477888888888 699999999853
No 134
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=40.12 E-value=31 Score=29.88 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=31.8
Q ss_pred CceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
.++.|++.+|+. .+.+.++.+.| .|++-|||.++...
T Consensus 177 ~~iPviv~gGI~t~eda~~~~~~G--AdgViVGSAi~~a~ 214 (264)
T 1xm3_A 177 AKVPVIVDAGIGSPKDAAYAMELG--ADGVLLNTAVSGAD 214 (264)
T ss_dssp CSSCBEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTSS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHcC--CCEEEEcHHHhCCC
Confidence 366799999995 99999999988 79999999998754
No 135
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=39.46 E-value=97 Score=25.69 Aligned_cols=62 Identities=3% Similarity=0.102 Sum_probs=35.9
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+. +-...+|.......++.++.. +..-+ |+.+.+.+...+..+.+.|.|+..++
T Consensus 41 ~a~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~--------~vdgi-Ii~~~~~~~~~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 41 IATMYKYNII-LSNSDQNMEKELHLLNTMLGK--------QVDGI-VFMGGNITDEHVAEFKRSPVPIVLAA 102 (289)
T ss_dssp HHHHTTCEEE-EEECTTCHHHHHHHHHHHHHT--------TCSEE-EECCSCCCHHHHHHHHHSSSCEEEES
T ss_pred HHHHcCCEEE-EEeCCCCHHHHHHHHHHHHhC--------CCCEE-EEecCCCCHHHHHHHHhcCCCEEEEc
Confidence 3556788763 333334654444444444322 33333 66666677788888888888876664
No 136
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=38.94 E-value=57 Score=26.05 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCC-----HHHHHHHhhcCCcccEEeecCc
Q 025365 54 DFEKMSITASNDLN-----EETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 54 g~~~vkI~~S~~ld-----e~~i~~l~~~g~~id~fGVGT~ 89 (254)
+..++-|++|+|.+ ...+..+.+.|..+.++|||+.
T Consensus 110 ~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 110 GVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp SCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCT
T ss_pred CCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCC
Confidence 34567699999976 3445666678888999999975
No 137
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=38.91 E-value=43 Score=34.53 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=30.0
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++.|+++||+ +.+.+.++...| .|+..||+.++.
T Consensus 786 ~~ipvi~~GGI~s~~da~~~l~~G--a~~v~vg~~~l~ 821 (1025)
T 1gte_A 786 PGFPILATGGIDSAESGLQFLHSG--ASVLQVCSAVQN 821 (1025)
T ss_dssp TTCCEEEESSCCSHHHHHHHHHTT--CSEEEESHHHHT
T ss_pred CCCCEEEecCcCCHHHHHHHHHcC--CCEEEEeecccc
Confidence 35779999999 888999988888 789999998875
No 138
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=38.68 E-value=16 Score=33.18 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=36.0
Q ss_pred EEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEEcCcccc
Q 025365 59 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRI 114 (254)
Q Consensus 59 kI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l~~vyKlv~~~g~p~~ 114 (254)
.|++.+..+.+.+.++++.|. +|..|+|-.++... +++-|+. +|.|..
T Consensus 288 ~v~~~g~~~~~~ae~~l~~G~-aD~V~~gR~~ladP-----dlp~k~~--~g~pl~ 335 (358)
T 4a3u_A 288 PLVLNQDYTFETAQAALDSGV-ADAISFGRPFIGNP-----DLPRRFF--EKAPLT 335 (358)
T ss_dssp CEEEESSCCHHHHHHHHHHTS-CSEEEESHHHHHCT-----THHHHHH--HTCCCC
T ss_pred cEEEeCCCCHHHHHHHHHcCC-ceEeHhhHHHHhCh-----hHHHHHH--hCCCCC
Confidence 478899999999999998875 79999999998844 4444443 355543
No 139
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=38.60 E-value=29 Score=30.58 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+|+.|.+. ++-.--.+++|+..|+.+.+-+.+|..+ ..+|++.||+.-..
T Consensus 187 vh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgASLk 240 (255)
T 1b9b_A 187 VHAFIRKLLSEM---YDEETAGSIRILYGGSIKPDNFLGLIVQ-KDIDGGLVGGASLK 240 (255)
T ss_dssp HHHHHHHHHHHH---SCHHHHHHSEEEEESSCCHHHHTTTSSS-TTCCEEEESGGGTS
T ss_pred HHHHHHHHHHHh---cCccccCcceEEEcCcCCHHHHHHHHcC-CCCCeeEeehHhhc
Confidence 344467777653 1100014689999999999999999854 34999999988665
No 140
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=38.43 E-value=98 Score=26.44 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCCh---------------HHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-H
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDL---------------AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-E 68 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl---------------~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e 68 (254)
+..|++++.++ |.. -|-..||=- ..-.+-+|+..++. | .+++|-+|||+. .
T Consensus 130 i~~a~~ia~ea---GAD--fVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~-------g-~~v~vKaaGGirt~ 196 (226)
T 1vcv_A 130 RYTLYDIIAEA---GAH--FIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEK-------G-YRLGVKMAGGIRTR 196 (226)
T ss_dssp HHHHHHHHHHH---TCS--EEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHH-------T-CCCEEEEESSCCSH
T ss_pred HHHHHHHHHHc---CCC--EEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHh-------C-CCceEEEeCCCCCH
Confidence 44566666654 543 466665421 11234456666665 3 578999999998 6
Q ss_pred HHHHHHhhc---CCcccEEeecCc
Q 025365 69 ETLDALNKQ---GHEVDAFGIGTY 89 (254)
Q Consensus 69 ~~i~~l~~~---g~~id~fGVGT~ 89 (254)
+...++.+. |+..+-|=+||+
T Consensus 197 ~~al~~i~a~~~Ga~~~~fRiGtS 220 (226)
T 1vcv_A 197 EQAKAIVDAIGWGEDPARVRLGTS 220 (226)
T ss_dssp HHHHHHHHHHCSCSCTTTEEEEES
T ss_pred HHHHHHHHHHHCCCCcCCceEecC
Confidence 777777777 988778888876
No 141
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=37.77 E-value=35 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCCceEEEEeCCCC-------HHHHHHHhhcCCcccEEeecCcc
Q 025365 54 DFEKMSITASNDLN-------EETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 54 g~~~vkI~~S~~ld-------e~~i~~l~~~g~~id~fGVGT~l 90 (254)
+..++-|++|+|.+ ...+..+.+.|..+.++|||+..
T Consensus 109 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~ 152 (198)
T 1n3y_A 109 DAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAF 152 (198)
T ss_dssp TSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGG
T ss_pred CCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccc
Confidence 44566799998864 34567778899999999999864
No 142
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=37.51 E-value=66 Score=29.50 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=33.8
Q ss_pred EEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 025365 59 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (254)
Q Consensus 59 kI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~l 99 (254)
.|+++||+ +...|.+.+..| .|+..||+.++.+...|.-
T Consensus 201 PVIAdGGI~~~~di~kALa~G--Ad~V~iGr~f~~t~Espg~ 240 (361)
T 3r2g_A 201 SIVADGGIKTSGDIVKALAFG--ADFVMIGGMLAGSAPTPGE 240 (361)
T ss_dssp EEEEESCCCSHHHHHHHHHTT--CSEEEESGGGTTBTTSSSC
T ss_pred CEEEECCCCCHHHHHHHHHcC--CCEEEEChHHhCCccCCce
Confidence 79999999 589999999999 6899999999988766643
No 143
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=37.13 E-value=1.3e+02 Score=28.32 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=29.0
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
++.||++||+ +.+.+.+....| .|..+|||.++.
T Consensus 373 ~iPVIg~GGI~s~~DA~e~l~aG--Ad~Vqigrall~ 407 (443)
T 1tv5_A 373 QIPIIASGGIFSGLDALEKIEAG--ASVCQLYSCLVF 407 (443)
T ss_dssp CSCEEEESSCCSHHHHHHHHHTT--EEEEEESHHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCEEEEcHHHHh
Confidence 6779999997 678888888889 799999999774
No 144
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=36.95 E-value=76 Score=25.53 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l 66 (254)
|.-.++..|.+.|+.+..+.+=.=|...+...+++.+++ +-.++ |+.|||+
T Consensus 29 n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~--------~~~Dl-VittGG~ 79 (172)
T 1mkz_A 29 SGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS--------DDVQV-VLITGGT 79 (172)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS--------SSCCE-EEEESCC
T ss_pred cHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc--------CCCCE-EEeCCCC
Confidence 555566667777776544333333555555555555543 11355 6777765
No 145
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=36.71 E-value=1.3e+02 Score=24.50 Aligned_cols=60 Identities=7% Similarity=0.127 Sum_probs=32.7
Q ss_pred HhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhh-cCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK-QGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~-~g~~id~fG 85 (254)
+++.|+.+. + .++ .|.......++.++.. +..-+ |+.+.+.+...+..+.+ .|.|+..++
T Consensus 47 ~~~~g~~~~-~-~~~~~~~~~~~~~~~~l~~~--------~vdgi-i~~~~~~~~~~~~~l~~~~~iPvV~~~ 108 (296)
T 3brq_A 47 AEEKGRQLL-L-ADGKHSAEEERQAIQYLLDL--------RCDAI-MIYPRFLSVDEIDDIIDAHSQPIMVLN 108 (296)
T ss_dssp HHHTTCEEE-E-ECCTTSHHHHHHHHHHHHHT--------TCSEE-EEECSSSCHHHHHHHHHTCSSCEEEES
T ss_pred HHHCCCEEE-E-EeCCCCHHHHHHHHHHHHhc--------CCCEE-EEecCCCChHHHHHHHhcCCCCEEEEc
Confidence 445677653 2 344 4554444434444432 33333 66666677777777777 777765553
No 146
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=36.22 E-value=1.1e+02 Score=25.38 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=37.0
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+-...+|.......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 29 ~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 29 AAQALNVTVEYRGAAQYDIQEQITVLEQAIAK--------NPAGI-AISAIDPVELTDTINKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHTCEEEEEECSSSCHHHHHHHHHHHHHH--------CCSEE-EECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHh--------CCCEE-EEcCCCHHHHHHHHHHHHHCCCcEEEEC
Confidence 34566887743233446765555555555544 33333 55554444 567888888888876654
No 147
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=36.06 E-value=30 Score=30.32 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 185 evh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 239 (250)
T 2j27_A 185 EAHALIRSWVSSK---IGADVAGELRILYGGSVNGKNARTLYQQ-RDVNGFLVGGASLK 239 (250)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHCCEEEESSCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHh---cChhhcccccEEEcCCCCHHHHHHHHcC-CCCCeeeeehHHHH
Confidence 3444467777653 1100014689999999999999999864 34999999988765
No 148
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=35.89 E-value=26 Score=33.86 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCHHHHHHHhhcC------CcccEEeecCcccccCC
Q 025365 56 EKMSITASNDLNEETLDALNKQG------HEVDAFGIGTYLVTCYA 95 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g------~~id~fGVGT~l~t~~~ 95 (254)
.++.|++=||++++.+.++..++ +-.|++.|++.+..+.+
T Consensus 172 ~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~d 217 (540)
T 3nl6_A 172 HWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLD 217 (540)
T ss_dssp TTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTT
T ss_pred CCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcCCC
Confidence 57889999999999999999732 34899999999987543
No 149
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=35.75 E-value=33 Score=32.65 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhh-cCCcccEEeecCc
Q 025365 30 GDLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNK-QGHEVDAFGIGTY 89 (254)
Q Consensus 30 GDl~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~-~g~~id~fGVGT~ 89 (254)
.+......++++.|.++ ..++..+ ..+-+..|||+|=..|..+.. .+.++..|.||..
T Consensus 217 ~~~~~~~~~l~~~L~~aV~~rl~sd--~~vgv~LSGGlDSS~vaala~~~~~~v~tfti~~~ 276 (513)
T 1jgt_A 217 LPEGEAVAAVRAALEKAVAQRVTPG--DTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTD 276 (513)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCTT--CCCEEECCSSHHHHHHHHHHHHHHSSCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCC--CcEEEECCCcHHHHHHHHHHHHhCCCceEEEcCCC
Confidence 35677888899999988 5555433 457799999999999998865 3456888988864
No 150
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=35.71 E-value=34 Score=29.93 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 183 evh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 237 (248)
T 1o5x_A 183 LVHKEIRKIVKDT---CGEKQANQIRILYGGSVNTENCSSLIQQ-EDIDGFLVGNASLK 237 (248)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHSEEEECSCCCTTTHHHHHTS-TTCCEEEECGGGGS
T ss_pred HHHHHHHHHHHHh---cCccccCcceEEEcCCCCHHHHHHHHcC-CCCCeeEeeHHHHH
Confidence 3444467777653 1100014689999999999999999874 34999999988765
No 151
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=35.02 E-value=1.3e+02 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHH
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARK 41 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~ 41 (254)
...++.++++|-+.|.++.=||..+-+-....+++++
T Consensus 37 ~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~ 73 (225)
T 1mxs_A 37 EEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLRE 73 (225)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHH
Confidence 4578899999999999998999876553333333333
No 152
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=34.63 E-value=71 Score=30.54 Aligned_cols=75 Identities=12% Similarity=0.204 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCCCccEE------eeCCCCh-HHHHHHHHHHHHHHhHhhCCCCC-CceEEEEeCCCC-HHHHHHHhhcCC
Q 025365 9 CAVALALNDLGYKAVGI------RLDSGDL-AYLSCEARKFFRTIEKEFGVPDF-EKMSITASNDLN-EETLDALNKQGH 79 (254)
Q Consensus 9 i~va~~l~~~G~~~~gV------RlDSGDl-~~ls~~~r~~ld~~g~~l~~~g~-~~vkI~~S~~ld-e~~i~~l~~~g~ 79 (254)
.+.|+.+.+.|....-| .+|++-. ..+..++++.+.+. +. .++.||++||+. -..+.+.+..|
T Consensus 354 ~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~-------~~~~~ipVia~GGI~~g~Dv~kaLalG- 425 (511)
T 1kbi_A 354 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQR-------NLKDKLEVFVDGGVRRGTDVLKALCLG- 425 (511)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTT-------TCBTTBEEEEESSCCSHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhh-------ccCCCcEEEEECCCCCHHHHHHHHHcC-
Confidence 45566677777554333 3455433 12333444444332 22 468999999985 56677777788
Q ss_pred cccEEeecCcccc
Q 025365 80 EVDAFGIGTYLVT 92 (254)
Q Consensus 80 ~id~fGVGT~l~t 92 (254)
.|+.+||+.++.
T Consensus 426 -AdaV~iGr~~l~ 437 (511)
T 1kbi_A 426 -AKGVGLGRPFLY 437 (511)
T ss_dssp -CSEEEECHHHHH
T ss_pred -CCEEEECHHHHH
Confidence 789999998775
No 153
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=34.15 E-value=65 Score=25.79 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHH
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFR 44 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld 44 (254)
|.-.++..|++.|+.+....+=.-|+..+...+++.++
T Consensus 32 n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~ 69 (169)
T 1y5e_A 32 SGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYH 69 (169)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHh
Confidence 44455556666666554333333344444444444443
No 154
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=34.02 E-value=68 Score=27.21 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=27.0
Q ss_pred CCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecCc
Q 025365 55 FEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 55 ~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT~ 89 (254)
..++-|++|+|.+- ..+..+.+.|..+-++|||..
T Consensus 128 ~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~ 168 (281)
T 4hqf_A 128 ANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQG 168 (281)
T ss_dssp CEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 45677999999753 345566778999999999986
No 155
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=33.87 E-value=1.9e+02 Score=24.61 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCC
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~ 79 (254)
...|+.++++|.+.|.+..=|=+.|.+-....+++++.+ +++.|=+..=+|.+..+...+.|+
T Consensus 24 ~~~a~~~a~al~~gGi~~iEvt~~t~~a~~~I~~l~~~~------------p~~~IGAGTVlt~~~a~~ai~AGA 86 (217)
T 3lab_A 24 LVHAIPMAKALVAGGVHLLEVTLRTEAGLAAISAIKKAV------------PEAIVGAGTVCTADDFQKAIDAGA 86 (217)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHC------------TTSEEEEECCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC------------CCCeEeeccccCHHHHHHHHHcCC
Confidence 467899999999999887667677777544444444433 333344444455555555555554
No 156
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=33.79 E-value=1.2e+02 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCCC--------HHHHHHHhhcCCcccEEeecC
Q 025365 54 DFEKMSITASNDLN--------EETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 54 g~~~vkI~~S~~ld--------e~~i~~l~~~g~~id~fGVGT 88 (254)
+..++-|++|+|.+ ...+..+.+.|..+..+|||.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~ 144 (182)
T 1shu_X 102 KTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 144 (182)
T ss_dssp GSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCc
Confidence 34567799999984 123455666888888899983
No 157
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=33.78 E-value=42 Score=31.86 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHH-hHhhCCCCCCceEEEEeCCCCHHHHHHHhh-cCCcccEEeecCc
Q 025365 30 GDLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNK-QGHEVDAFGIGTY 89 (254)
Q Consensus 30 GDl~~ls~~~r~~ld~~-g~~l~~~g~~~vkI~~S~~lde~~i~~l~~-~g~~id~fGVGT~ 89 (254)
.+......++|+.|.++ ..++..+ ..+-+++|||+|=..+..+.. ++.++..|.+|..
T Consensus 214 ~~~~~~~~~l~~~L~~aV~~rl~sd--~~v~v~LSGGlDSs~vaala~~~~~~~~~~t~~~~ 273 (503)
T 1q15_A 214 LPREPLLALIDRYLNAPLEDLAPRF--DTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTE 273 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGC--SEEEEECCSSHHHHHHHHHHTTTCSEEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCC--CcEEEECCCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 45677888899999987 5555332 456799999999999998875 4556888888864
No 158
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=33.20 E-value=1.5e+02 Score=24.02 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCCccEEe-eCCC--ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcc
Q 025365 6 PNFCAVALALNDLGYKAVGIR-LDSG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVR-lDSG--Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~i 81 (254)
.+.+++++++.+.|....-|+ .|.. ........++++- +. .++.|+++|++. .+.+.++.+.| .
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~-~~---------~~ipvi~~g~i~~~~~~~~~~~~G--a 100 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVA-EA---------VSIPVLVGGGVRSLEDATTLFRAG--A 100 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHH-HH---------CSSCEEEESSCCSHHHHHHHHHHT--C
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHH-Hh---------cCCCEEEECCCCCHHHHHHHHHcC--C
Confidence 367888999988887754454 2221 1112222233322 22 245688887765 67788888888 7
Q ss_pred cEEeecCcccc
Q 025365 82 DAFGIGTYLVT 92 (254)
Q Consensus 82 d~fGVGT~l~t 92 (254)
|...+|+.+..
T Consensus 101 d~V~i~~~~~~ 111 (253)
T 1h5y_A 101 DKVSVNTAAVR 111 (253)
T ss_dssp SEEEESHHHHH
T ss_pred CEEEEChHHhh
Confidence 88888888765
No 159
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=33.16 E-value=44 Score=27.99 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCccEEe-eCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCC
Q 025365 7 NFCAVALALNDLGYKAVGIR-LDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVR-lDS-----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~ 79 (254)
+.+++|+++.+.|....-|+ +|. |....+. +++ .++ .++.++++|++. .+.+.++.+.|
T Consensus 36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i---~~i-~~~---------~~ipvi~~Ggi~~~~~~~~~l~~G- 101 (247)
T 3tdn_A 36 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMI---RFV-RPL---------TTLPIIASGGAGKMEHFLEAFLRG- 101 (247)
T ss_dssp EHHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHH---HHH-GGG---------CCSCEEEESCCCSHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHH---HHH-HHh---------CCCCEEEeCCCCCHHHHHHHHHcC-
Confidence 57889999999887755554 232 1111222 222 221 245689998885 67788888888
Q ss_pred cccEEeecCccccc
Q 025365 80 EVDAFGIGTYLVTC 93 (254)
Q Consensus 80 ~id~fGVGT~l~t~ 93 (254)
+|..-|||.+...
T Consensus 102 -ad~V~ig~~~l~d 114 (247)
T 3tdn_A 102 -ADKVSINTAAVEN 114 (247)
T ss_dssp -CSEECCSHHHHHC
T ss_pred -CCeeehhhHHhhC
Confidence 8999999998763
No 160
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=32.28 E-value=42 Score=29.04 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
..+.++-+.+++. +. .+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 172 e~a~ev~~~IR~~---l~----~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsl~ 222 (233)
T 2jgq_A 172 EDIYLTHGFLKQI---LN----QKTPLLYGGSVNTQNAKEILGI-DSVDGLLIGSASWE 222 (233)
T ss_dssp HHHHHHHHHHHHH---SC----TTSCEEEESSCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHH---Hh----cCCcEEEcCCcChhhHHHHhcC-CCCCeeEecHHHhC
Confidence 3455555555553 21 5799999999999999999874 34999999987665
No 161
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=32.21 E-value=30 Score=29.15 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=29.9
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+..|.+.||++.+.+..+.+.| .|.|=||+.+..+.
T Consensus 168 ~~~i~v~gGI~~~~~~~~~~aG--ad~~VvG~~I~~a~ 203 (221)
T 3exr_A 168 GFRVSVTGGLSVDTLKLFEGVD--VFTFIAGRGITEAK 203 (221)
T ss_dssp TCEEEEESSCCGGGGGGGTTCC--CSEEEECHHHHTSS
T ss_pred CceEEEECCCCHHHHHHHHHCC--CCEEEECchhhCCC
Confidence 4668999999999999888888 78888998887643
No 162
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=31.67 E-value=78 Score=29.90 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=35.8
Q ss_pred HHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCC
Q 025365 39 ARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (254)
Q Consensus 39 ~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p 97 (254)
+++.+++. | .++.||++||+ +...|.+....| .|+-+|||.++.+...|
T Consensus 342 ~~~~~~~~-------~-~~ipvia~GGi~~~~di~kAlalG--A~~V~iG~~~~~~~E~~ 391 (503)
T 1me8_A 342 RNKYFEET-------G-IYIPVCSDGGIVYDYHMTLALAMG--ADFIMLGRYFARFEESP 391 (503)
T ss_dssp HHHHHHHH-------S-EECCEEEESCCCSHHHHHHHHHTT--CSEEEESHHHHTBTTSS
T ss_pred HHHHhhhc-------C-CCceEEEeCCCCCHHHHHHHHHcC--CCEEEECchhhccccCC
Confidence 34556665 4 35779998887 477777777889 68899999998765444
No 163
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=31.33 E-value=45 Score=29.29 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+.+.+. -.+++|+..|+.+..-+.+|..+ ..||++-||+.-..
T Consensus 185 evh~~IR~~l~~~~~~~----a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 238 (255)
T 1tre_A 185 AVHKFIRDHIAKVDANI----AEQVIIQYGGSVNASNAAELFAQ-PDIDGALVGGASLK 238 (255)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHCEEEECSCCCTTTHHHHHTS-TTCCEEEESGGGGC
T ss_pred HHHHHHHHHHHhcChhh----cCcccEEEcCCCCHHHHHHHHcC-CCCCeeEecHHHhC
Confidence 34444677665431111 14689999999999999999874 34999999987665
No 164
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=31.31 E-value=46 Score=29.10 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 186 evh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 240 (251)
T 2vxn_A 186 EVHLLLRKWVSEN---IGTDVAAKLRILYGGSVNAANAATLYAK-PDINGFLVGGASLK 240 (251)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHCEEEEESSCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHh---cChhhcccccEEEcCCcCHhHHHHHhcC-CCCCeeeecHHHHH
Confidence 3444467776653 1100014689999999999999999875 34999999988765
No 165
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=31.22 E-value=93 Score=31.36 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=44.1
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCccc-EEeecCcccc
Q 025365 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD-AFGIGTYLVT 92 (254)
Q Consensus 17 ~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id-~fGVGT~l~t 92 (254)
+.+..+.|+=-=.+.-..+..++.+.|+++ |..+++|++.|-.=......+.+.| +| .|+.||.+..
T Consensus 645 e~~adiVglSsl~~~~~~~~~~vi~~L~~~-------G~~~i~VivGG~~p~~d~~~l~~~G--aD~~f~~gt~~~e 712 (727)
T 1req_A 645 EADVHVVGVSSLAGGHLTLVPALRKELDKL-------GRPDILITVGGVIPEQDFDELRKDG--AVEIYTPGTVIPE 712 (727)
T ss_dssp HTTCSEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTSEEEEEESCCGGGHHHHHHTT--EEEEECTTCCHHH
T ss_pred HcCCCEEEEeeecHhHHHHHHHHHHHHHhc-------CCCCCEEEEcCCCccccHHHHHhCC--CCEEEcCCccHHH
Confidence 445556666443344456678888888887 8878989998844444455566777 44 4677887654
No 166
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=31.07 E-value=44 Score=26.85 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=26.5
Q ss_pred CCCceEEEEeCCCCH--------HHHHHHhhcCCcccEEeecCc
Q 025365 54 DFEKMSITASNDLNE--------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 54 g~~~vkI~~S~~lde--------~~i~~l~~~g~~id~fGVGT~ 89 (254)
+..++-|++|+|-+- ..+..+.+.|..+-++|||..
T Consensus 114 ~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~ 157 (202)
T 1ijb_A 114 EASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH 157 (202)
T ss_dssp TSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTT
T ss_pred CCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCc
Confidence 345677999998752 334567778988899999974
No 167
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=30.83 E-value=98 Score=25.58 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcc
Q 025365 7 NFCAVALALNDLGYKAVGIRLDS----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDS----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~i 81 (254)
+.+++++++.+.|....-|+-.+ |.+.. ..++++-.+ .++.+++.+++. .+.+..+.+.| .
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~--~~i~~i~~~----------~~ipv~v~ggI~~~~~~~~~l~~G--a 98 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR--ALIAEVAQA----------MDIKVELSGGIRDDDTLAAALATG--C 98 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH--HHHHHHHHH----------CSSEEEEESSCCSHHHHHHHHHTT--C
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH--HHHHHHHHh----------cCCcEEEECCcCCHHHHHHHHHcC--C
Confidence 67788899988898876776432 33222 333333222 356788888877 46688898888 6
Q ss_pred cEEeecCcccc
Q 025365 82 DAFGIGTYLVT 92 (254)
Q Consensus 82 d~fGVGT~l~t 92 (254)
|..-+|+.+..
T Consensus 99 d~V~lg~~~l~ 109 (244)
T 1vzw_A 99 TRVNLGTAALE 109 (244)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECchHhh
Confidence 77778887655
No 168
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=30.50 E-value=72 Score=25.95 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHH
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFF 43 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~l 43 (254)
|.-.++..|++.|+.+....+=.-|+..+...+++.+
T Consensus 41 n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~ 77 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDAL 77 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH
Confidence 4444555555666554333332234333444444433
No 169
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=30.39 E-value=78 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld 67 (254)
|.-.++..|++.|+.+..+.+=.-|+..+...+++.+++ .-.++ |+.|||+.
T Consensus 22 n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~--------~~~Dl-VittGG~g 73 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADR--------EGLDL-ILTNGGTG 73 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHT--------SCCSE-EEEESCCS
T ss_pred hHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhc--------CCCCE-EEEcCCCC
Confidence 555667777777776544443334555555556665552 01356 77787763
No 170
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=30.38 E-value=48 Score=28.52 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=30.1
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.|++.+|++ .+.+.+....| .|++=|||.++..
T Consensus 205 ~~pi~vggGI~t~e~~~~~~~ag--AD~vVVGSai~~~ 240 (268)
T 1qop_A 205 AAPALQGFGISSPEQVSAAVRAG--AAGAISGSAIVKI 240 (268)
T ss_dssp CCCEEEESSCCSHHHHHHHHHTT--CSEEEECHHHHHH
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCEEEEChHHhhh
Confidence 56799999998 99999977777 7899999999864
No 171
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=29.94 E-value=1e+02 Score=25.79 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=35.5
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH--HHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE--ETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde--~~i~~l~~~g~~id~fG 85 (254)
+++.|+++.-+-.+.+|.......++.++.. +..-+ |+.+.+.+. ..+..+.+.|.|+..++
T Consensus 26 ~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 26 GKALGVDTKFFVPQKEDINAQLQMLESFIAE--------GVNGI-AIAPSDPTAVIPTIKKALEMGIPVVTLD 89 (313)
T ss_dssp HHHHTCEEEEECCSSSCHHHHHHHHHHHHHT--------TCSEE-EECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHcCCEEEEECCCCCCHHHHHHHHHHHHHc--------CCCEE-EEeCCChHHHHHHHHHHHHCCCeEEEeC
Confidence 4556877632223457876666656665543 33223 555544443 56777778888876654
No 172
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=29.74 E-value=43 Score=29.28 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 183 evh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 237 (248)
T 1r2r_A 183 EVHEKLRGWLKSN---VSDAVAQSTRIIYGGSVTGATCKELASQ-PDVDGFLVGGASLK 237 (248)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHCCEEECSCCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHh---cChhhcccccEEEcCCcCHhHHHHHHcC-CCCCeeEechHHhC
Confidence 3444467777653 1100013589999999999999999875 34999999988665
No 173
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=29.57 E-value=41 Score=29.95 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..||++.||+.-..
T Consensus 202 evh~~IR~~l~~~---~~~~~a~~vrILYGGSV~~~N~~el~~~-~diDG~LVGgASLk 256 (275)
T 1mo0_A 202 EVHEWIRAFLKEK---VSPAVADATRIIYGGSVTADNAAELGKK-PDIDGFLVGGASLK 256 (275)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHSCEEEESSCCTTTHHHHTTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHh---hChhhcCcccEEEcCCCCHhhHHHHhcC-CCCCeeEechHHhC
Confidence 3444467776653 1100013689999999999999999874 34999999998766
No 174
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=29.32 E-value=46 Score=29.33 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred ceEEEEeCCC-CHHHHHHHhh-cCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNK-QGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~-~g~~id~fGVGT~l~t~ 93 (254)
++.|+++||+ +.+.+.++.+ .| +|+..||+.+..+
T Consensus 183 ~ipVi~~GgI~s~~da~~~l~~~g--ad~V~iGR~~l~~ 219 (318)
T 1vhn_A 183 RIPTFVSGDIFTPEDAKRALEESG--CDGLLVARGAIGR 219 (318)
T ss_dssp SSCEEEESSCCSHHHHHHHHHHHC--CSEEEESGGGTTC
T ss_pred CCeEEEECCcCCHHHHHHHHHcCC--CCEEEECHHHHhC
Confidence 5679999998 8899998887 46 8899999988874
No 175
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=29.05 E-value=1.3e+02 Score=24.46 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=34.2
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+.-+ ...+|.......++.+... +..-+ |+.+.+.+...+..+.+.|.|+..++
T Consensus 29 ~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~--------~vdgi-i~~~~~~~~~~~~~l~~~~iPvV~~~ 89 (275)
T 3d8u_A 29 LNKAGYQLLLG-YSDYSIEQEEKLLSTFLES--------RPAGV-VLFGSEHSQRTHQLLEASNTPVLEIA 89 (275)
T ss_dssp HHHTSCEECCE-ECTTCHHHHHHHHHHHHTS--------CCCCE-EEESSCCCHHHHHHHHHHTCCEEEES
T ss_pred HHHCCCEEEEE-cCCCCHHHHHHHHHHHHhc--------CCCEE-EEeCCCCCHHHHHHHHhCCCCEEEEe
Confidence 45678876432 2224543333333333221 33333 77777777778888888888876654
No 176
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=29.02 E-value=1.6e+02 Score=24.93 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=13.6
Q ss_pred EEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 60 ITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 60 I~~S~~lde~~i~~l~~~g~~id~f 84 (254)
|+.+.+.+...+..+.+.|.|+..+
T Consensus 124 I~~~~~~~~~~~~~l~~~~iPvV~~ 148 (332)
T 2o20_A 124 VYMGSSLDEKIRTSLKNSRTPVVLV 148 (332)
T ss_dssp EECSSCCCHHHHHHHHHHCCCEEEE
T ss_pred EEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 4444445555566665556665444
No 177
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=28.86 E-value=1.3e+02 Score=24.15 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=39.2
Q ss_pred HHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCC-CCceEEEEeC--CCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPD-FEKMSITASN--DLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g-~~~vkI~~S~--~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+-.|+ +|.......++.++.. + ..-+ |+.+. ..+...+..+.+.|.|+..++
T Consensus 25 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--------~~vdgi-i~~~~~~~~~~~~~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 25 AADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQ--------APPDAL-ILAPNSAEDLTPSVAQYRARNIPVLVVD 91 (276)
T ss_dssp HHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHH--------SCCSEE-EECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHh--------CCCCEE-EEeCCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 3456688775444433 6766665556665554 4 3333 55442 467788999998998876664
No 178
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.76 E-value=1.9e+02 Score=23.56 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=34.7
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH--HHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE--ETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde--~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+ ...+|.......++.++.. +..-+ |+.+.+.+. ..+..+.+.|.|+..++
T Consensus 33 ~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~--------~vdgi-I~~~~~~~~~~~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 33 EAKANKYEALVA-TSQNSRISEREQILEFVHL--------KVDAI-FITTLDDVYIGSAIEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHTTCEEEEE-ECSSCHHHHHHHHHHHHHT--------TCSEE-EEECSCTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEEEEE-CCCCCHHHHHHHHHHHHHc--------CCCEE-EEecCChHHHHHHHHHHHHcCCCEEEec
Confidence 345678876433 3335655444445544433 33333 555544443 66788888887766654
No 179
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.61 E-value=2.2e+02 Score=24.39 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=17.4
Q ss_pred EEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 60 ITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 60 I~~S~~lde~~i~~l~~~g~~id~f 84 (254)
|+.+.+.+...+..+.+.|.|+..+
T Consensus 131 I~~~~~~~~~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 131 VLSYDGHTEQTIRLLQRASIPIVEI 155 (355)
T ss_dssp EEECSCCCHHHHHHHHHCCSCEEEE
T ss_pred EEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 6666666777777777777776655
No 180
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=28.60 E-value=48 Score=26.95 Aligned_cols=36 Identities=6% Similarity=0.083 Sum_probs=27.0
Q ss_pred CCCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecCc
Q 025365 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 54 g~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT~ 89 (254)
+..++-|++|+|.+- ..+..+.+.|..+.++|||+.
T Consensus 123 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 123 GVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp TSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGG
T ss_pred CCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecCc
Confidence 455677999998763 345667778888889999975
No 181
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=28.42 E-value=65 Score=28.22 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+|+.|.+. ++-.--.+++|+..|+.+.+-+.+|..+ ..||++-||+.-..
T Consensus 189 vh~~IR~~l~~~---~~~~~a~~~rIlYGGSV~~~N~~~l~~~-~diDG~LVGgASL~ 242 (254)
T 3m9y_A 189 MCAFVRQTIADL---SSKEVSEATRIQYGGSVKPNNIKEYMAQ-TDIDGALVGGASLK 242 (254)
T ss_dssp HHHHHHHHHHHH---SCHHHHTTSEEEECSCCCTTTHHHHHTS-TTCCEEEESGGGSS
T ss_pred HHHHHHHHHHHh---cChhhcCCccEEEcCCcCHHHHHHHHcC-CCCCeEEeeHHhhC
Confidence 334477777654 1100015799999999999999999864 34999999987544
No 182
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=27.64 E-value=66 Score=26.43 Aligned_cols=62 Identities=8% Similarity=0.101 Sum_probs=32.6
Q ss_pred HhhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH--HHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE--ETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlD-SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde--~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+.-+-.| .+|.......++.++.. +..-+ |+.+.+.+. ..+..+.+.|.|+..++
T Consensus 33 a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~vdgi-i~~~~~~~~~~~~~~~~~~~~iPvV~~~ 97 (289)
T 3brs_A 33 AKEYEIKLEFMAPEKEEDYLVQNELIEEAIKR--------KPDVI-LLAAADYEKTYDAAKEIKDAGIKLIVID 97 (289)
T ss_dssp HHHHTCEEEECCCSSTTCHHHHHHHHHHHHHT--------CCSEE-EECCSCTTTTHHHHTTTGGGTCEEEEES
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh--------CCCEE-EEeCCChHHhHHHHHHHHHCCCcEEEEC
Confidence 45568766443444 35655444444444432 33333 555555443 55666767777765553
No 183
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=27.45 E-value=1.5e+02 Score=25.42 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=25.5
Q ss_pred eEEEEeCCCCHH-------HHHHHhhcCCcccEEeecCcccccC
Q 025365 58 MSITASNDLNEE-------TLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 58 vkI~~S~~lde~-------~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+.|++|||+..+ .+....+.|+ ++.-+|.++....
T Consensus 197 ~pV~asGGi~~~~~~~~l~~i~~~~~aGA--~GvsvgraI~~~~ 238 (263)
T 1w8s_A 197 VPVLMSGGPKTKTEEDFLKQVEGVLEAGA--LGIAVGRNVWQRR 238 (263)
T ss_dssp SCEEEECCSCCSSHHHHHHHHHHHHHTTC--CEEEESHHHHTST
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHcCC--eEEEEehhhcCCc
Confidence 479999999633 4444457885 5888899988764
No 184
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=27.44 E-value=89 Score=28.44 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.+.++...+.++ ..++.|+++||+ +.+.+.++...| .|...|||.+..
T Consensus 263 ~a~~~i~~v~~~--------~~~ipII~~GGI~s~~da~~~l~aG--Ad~V~vgra~l~ 311 (354)
T 4ef8_A 263 TALANINAFYRR--------CPGKLIFGCGGVYTGEDAFLHVLAG--ASMVQVGTALQE 311 (354)
T ss_dssp HHHHHHHHHHHH--------CTTSEEEEESCCCSHHHHHHHHHHT--EEEEEECHHHHH
T ss_pred HHHHHHHHHHHh--------CCCCCEEEECCcCCHHHHHHHHHcC--CCEEEEhHHHHH
Confidence 455544445443 246889999998 477777877888 799999999876
No 185
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=27.30 E-value=1.9e+02 Score=26.54 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=44.0
Q ss_pred HHHHHHHhhcCCCccEE------eeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcc
Q 025365 9 CAVALALNDLGYKAVGI------RLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (254)
Q Consensus 9 i~va~~l~~~G~~~~gV------RlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~i 81 (254)
.+.|+.+.+.|....-| .+|+|-... .-+.++.+.. + .++.|+++||+. ...+.+.+..| .
T Consensus 263 ~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~--~~l~~v~~av-------~-~~ipVia~GGI~~g~Dv~kalalG--A 330 (392)
T 2nzl_A 263 GDDAREAVKHGLNGILVSNHGARQLDGVPATI--DVLPEIVEAV-------E-GKVEVFLDGGVRKGTDVLKALALG--A 330 (392)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHH--HHHHHHHHHH-------T-TSSEEEECSSCCSHHHHHHHHHTT--C
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChH--HHHHHHHHHc-------C-CCCEEEEECCCCCHHHHHHHHHhC--C
Confidence 34566666777554333 346554321 1122222222 1 368899999984 56777777788 7
Q ss_pred cEEeecCcccc
Q 025365 82 DAFGIGTYLVT 92 (254)
Q Consensus 82 d~fGVGT~l~t 92 (254)
|+.+||+.+..
T Consensus 331 d~V~iGr~~l~ 341 (392)
T 2nzl_A 331 KAVFVGRPIVW 341 (392)
T ss_dssp SEEEECHHHHH
T ss_pred CeeEECHHHHH
Confidence 89999997765
No 186
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=27.28 E-value=94 Score=25.72 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=37.4
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+ +-.+++|.......++.++.. +. +.-|+.+.+.+ ...+..+.+.|.|+..++
T Consensus 28 a~~~g~~~--~~~~~~~~~~~~~~i~~l~~~--------~v-dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 28 GKDLGFEV--IKIAVPDGEKTLNAIDSLAAS--------GA-KGFVICTPDPKLGSAIVAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHTEEE--EEEECCSHHHHHHHHHHHHHT--------TC-CEEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred HHHcCCEE--EEeCCCCHHHHHHHHHHHHHc--------CC-CEEEEeCCCchhhHHHHHHHHHCCCcEEEeC
Confidence 45568776 456778876666666665554 43 33266655443 344778888898876665
No 187
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=27.00 E-value=1.8e+02 Score=23.75 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC--CCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~--lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+ ...+|.......++.++.. +..-+ |+.+.+ .....+..+.+.|.|+..++
T Consensus 30 ~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 30 EIERLGGTAIAL-DAGRNDQTQVSQIQTLIAQ--------KPDAI-IEQLGNLDVLNPWLQKINDAGIPLFTVD 93 (291)
T ss_dssp HHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHH--------CCSEE-EEESSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEEEEE-cCCCCHHHHHHHHHHHHHc--------CCCEE-EEeCCChhhhHHHHHHHHHCCCcEEEec
Confidence 355678876433 3345655544444444443 43333 555544 44667788888888876664
No 188
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=26.96 E-value=50 Score=29.04 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 193 vh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 246 (261)
T 1m6j_A 193 VHQYIRKWMTEN---ISKEVAEATRIQYGGSVNPANCNELAKK-ADIDGFLVGGASLD 246 (261)
T ss_dssp HHHHHHHHHHHH---TCHHHHHHSCEEECSCCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHh---hChhhcccccEEEcCCcCHhhHHHHhcC-CCCCeeEecHHHhC
Confidence 344467766653 1100013689999999999999999875 34999999988765
No 189
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=26.86 E-value=49 Score=25.61 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.3
Q ss_pred CceEEEEeCCCC--------HHHHHHHhhcCCcccEEeec
Q 025365 56 EKMSITASNDLN--------EETLDALNKQGHEVDAFGIG 87 (254)
Q Consensus 56 ~~vkI~~S~~ld--------e~~i~~l~~~g~~id~fGVG 87 (254)
.++-|++|+|.+ ...+..+.+.|..+.++|||
T Consensus 107 ~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg 146 (185)
T 3n2n_F 107 ASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK 146 (185)
T ss_dssp EEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS
T ss_pred CcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec
Confidence 456699999987 34456667788888888888
No 190
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.80 E-value=1.4e+02 Score=24.56 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=33.8
Q ss_pred HHhhcCCCccEEeeCC-CChHHHHH---HHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDS-GDLAYLSC---EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDS-GDl~~ls~---~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+. + .++ +|...... .++.+... +..-+ |+.+.+.+...+..+.+.|.|+..++
T Consensus 33 ~a~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~--------~vdgi-Ii~~~~~~~~~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 33 ELRAVHRHVV-V-ATGCGESTPREQALEAVRFLIGR--------DCDGV-VVISHDLHDEDLDELHRMHPKMVFLN 97 (290)
T ss_dssp HHHHTTCEEE-E-ECCCSSSCHHHHHHHHHHHHHHT--------TCSEE-EECCSSSCHHHHHHHHHHCSSEEEES
T ss_pred HHHHCCCEEE-E-EeCCCchhhhhhHHHHHHHHHhc--------CccEE-EEecCCCCHHHHHHHhhcCCCEEEEc
Confidence 3456788763 2 233 35443333 33333322 33333 66666677777788877888876654
No 191
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=26.58 E-value=20 Score=29.65 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred ceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
+..|++.||++.+.+.++.+.| .|.+-||+.+..+.
T Consensus 163 ~~~i~v~GGI~~~~~~~~~~aG--ad~ivvG~~I~~a~ 198 (216)
T 1q6o_A 163 GFKVTVTGGLALEDLPLFKGIP--IHVFIAGRSIRDAA 198 (216)
T ss_dssp TCEEEEESSCCGGGGGGGTTSC--CSEEEESHHHHTSS
T ss_pred CCcEEEECCcChhhHHHHHHcC--CCEEEEeehhcCCC
Confidence 4569999999999999998888 67888999988643
No 192
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=26.44 E-value=30 Score=27.40 Aligned_cols=37 Identities=11% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCCceEEEEeCCCCH-------HHHHHHhhcCCcccEEeecCcc
Q 025365 54 DFEKMSITASNDLNE-------ETLDALNKQGHEVDAFGIGTYL 90 (254)
Q Consensus 54 g~~~vkI~~S~~lde-------~~i~~l~~~g~~id~fGVGT~l 90 (254)
+.+++-|++|+|.+- +.+..+.+.|..+.++|||...
T Consensus 105 ~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~ 148 (194)
T 1mf7_A 105 NAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAF 148 (194)
T ss_dssp TSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGG
T ss_pred CCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccc
Confidence 345677889988643 4567788889889999999754
No 193
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=26.43 E-value=1.7e+02 Score=27.48 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccE
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~ 83 (254)
++..+.+++|.+.|.. .|=+|+ |+...+.. ..+.+.+. ++++.|++.+-.+.+.+..+.+.|+....
T Consensus 228 ~~~~~~a~~l~~aG~d--~I~id~a~g~~~~~~~-~v~~i~~~--------~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~ 296 (490)
T 4avf_A 228 ADTGERVAALVAAGVD--VVVVDTAHGHSKGVIE-RVRWVKQT--------FPDVQVIGGNIATAEAAKALAEAGADAVK 296 (490)
T ss_dssp TTHHHHHHHHHHTTCS--EEEEECSCCSBHHHHH-HHHHHHHH--------CTTSEEEEEEECSHHHHHHHHHTTCSEEE
T ss_pred cchHHHHHHHhhcccc--eEEecccCCcchhHHH-HHHHHHHH--------CCCceEEEeeeCcHHHHHHHHHcCCCEEE
Confidence 3566777788777755 455565 44332222 22222332 34678999889999999999999965444
Q ss_pred Eeec--Cccc----ccCCCCccceEEEEeE
Q 025365 84 FGIG--TYLV----TCYAQAALGCVFKLVE 107 (254)
Q Consensus 84 fGVG--T~l~----t~~~~p~l~~vyKlv~ 107 (254)
.|+| +... ...+.|.+..++.+++
T Consensus 297 vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~ 326 (490)
T 4avf_A 297 VGIGPGSICTTRIVAGVGVPQISAIANVAA 326 (490)
T ss_dssp ECSSCSTTCHHHHHTCBCCCHHHHHHHHHH
T ss_pred ECCCCCcCCCccccCCCCccHHHHHHHHHH
Confidence 3332 2221 2334566666666554
No 194
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=26.36 E-value=1.5e+02 Score=32.46 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCC-ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~-~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
....++++.+.+. |+. ++.|+++||| +-..+.+....| .+++++||.+..+
T Consensus 1082 ~aL~ev~~al~~~-------glr~~IpVIAdGGIrtG~DVakALaLG--AdaV~iGTafL~a 1134 (1520)
T 1ofd_A 1082 LGVTEVHRVLMEN-------QLRDRVLLRADGGLKTGWDVVMAALMG--AEEYGFGSIAMIA 1134 (1520)
T ss_dssp HHHHHHHHHHHHT-------TCGGGCEEEEESSCCSHHHHHHHHHTT--CSEEECSHHHHHH
T ss_pred HHHHHHHHHHHhc-------CCCCCceEEEECCCCCHHHHHHHHHcC--CCeeEEcHHHHHH
Confidence 3444566666664 543 6999999998 477788888889 6799999998764
No 195
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=26.33 E-value=2e+02 Score=24.39 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=36.5
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+. +-.-..|.......++.++.. +..-+ |+.+.+.+...+..+.+.|.|+..++
T Consensus 93 ~a~~~g~~~~-~~~~~~~~~~~~~~i~~l~~~--------~vdGi-Ii~~~~~~~~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 93 VLEDTELQPV-VGVTDYLPEKEEKVLYEMLSW--------RPSGV-IIAGLEHSEAARAMLDAAGIPVVEIM 154 (344)
T ss_dssp HHTSSSSEEE-EEECTTCHHHHHHHHHHHHTT--------CCSEE-EEECSCCCHHHHHHHHHCSSCEEEEE
T ss_pred HHHHCCCEEE-EEeCCCCHHHHHHHHHHHHhC--------CCCEE-EEECCCCCHHHHHHHHhCCCCEEEEe
Confidence 4556787763 322334554443333333322 33334 77777778888888888898887774
No 196
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=26.26 E-value=1.3e+02 Score=24.92 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+ +-.++.+-...-.++.+.|.+. +..-+ |+++...+...+..+.+.|.|+..++
T Consensus 36 ~~a~~~g~~~--~~~~~~~~~~~~~~~~~~l~~~-------~vdGi-I~~~~~~~~~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 36 ETCNQHGYGT--QTTVSNNMNDLMDEVYKMIKQR-------MVDAF-ILLYSKENDPIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHTTTCEE--EECCCCSHHHHHHHHHHHHHTT-------CCSEE-EESCCCTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHHCCCEE--EEEcCCCChHHHHHHHHHHHhC-------CcCEE-EEcCcccChHHHHHHHhCCCCEEEEC
Confidence 3355678765 3345655433334444444442 33334 66666666677888888898876664
No 197
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.99 E-value=1.3e+02 Score=24.67 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+ +=.++.+-...-.++.+.+.+. +..-+ |+++...+...+..+.+.|.|+..++
T Consensus 38 ~a~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~-------~vdgi-Ii~~~~~~~~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 38 FAHVEGYAL--YMSTGETEEEIFNGVVKMVQGR-------QIGGI-ILLYSRENDRIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp HHHHTTCEE--EECCCCSHHHHHHHHHHHHHTT-------CCCEE-EESCCBTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEE--EEEeCCCCHHHHHHHHHHHHcC-------CCCEE-EEeCCCCChHHHHHHHHCCCCEEEEC
Confidence 355678765 2345555444334444444432 33334 66666667778888888888876654
No 198
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=25.94 E-value=81 Score=27.69 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 182 evh~~IR~~l~~~---~~~~va~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 236 (259)
T 2i9e_A 182 DVHKALRQWICEN---IDAKVGNSIRIQYGGSVTAANCKELASQ-PDIDGFLVGGASLK 236 (259)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHCEEEECSCCCTTTHHHHHTS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHh---cChhhcccccEEEcCCCCHhhHHHHhcC-CCCCeeeechHhhC
Confidence 3444577777653 1100013689999999999999999874 34999999998766
No 199
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=25.92 E-value=1.1e+02 Score=25.68 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCccEEee-C-----CCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCC
Q 025365 7 NFCAVALALNDLGYKAVGIRL-D-----SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRl-D-----SGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~ 79 (254)
+.+++++++.+.|....-|+= | +|....+.+++ .+. .++.|+++|+++ .+.+.++.+.|
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i----~~~---------~~iPvi~~ggi~~~~~i~~~~~~G- 96 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFV----RPL---------TTLPIIASGGAGKMEHFLEAFLAG- 96 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHH----GGG---------CCSCEEEESCCCSTHHHHHHHHHT-
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHH----HHh---------cCCCEEEECCCCCHHHHHHHHHcC-
Confidence 467888888888876555532 1 12212222222 221 356799999976 46788888877
Q ss_pred cccEEeecCccc
Q 025365 80 EVDAFGIGTYLV 91 (254)
Q Consensus 80 ~id~fGVGT~l~ 91 (254)
+|+.-+|+.+.
T Consensus 97 -ad~v~lg~~~~ 107 (266)
T 2w6r_A 97 -ADKALAASVFH 107 (266)
T ss_dssp -CSEEECCCCC-
T ss_pred -CcHhhhhHHHH
Confidence 78999999888
No 200
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=25.58 E-value=1.5e+02 Score=32.31 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhHhhCCCCC-CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDF-EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~-~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
...++++.+.+. |+ .++.|+++||| +-..+.+....| .++++|||.+..+
T Consensus 1048 aL~ev~~al~~~-------glr~~VpVIAdGGIrtG~DVakALaLG--AdaV~iGTafL~a 1099 (1479)
T 1ea0_A 1048 GLSEVHQVLTLN-------RLRHRVRLRTDGGLKTGRDIVIAAMLG--AEEFGIGTASLIA 1099 (1479)
T ss_dssp HHHHHHHHHHTT-------TCTTTSEEEEESSCCSHHHHHHHHHTT--CSEEECCHHHHHH
T ss_pred HHHHHHHHHHHc-------CCCCCceEEEECCCCCHHHHHHHHHcC--CCeeeEcHHHHHH
Confidence 444566666654 54 36999999998 477788888889 6799999998763
No 201
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.54 E-value=2.2e+02 Score=23.14 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+. +-...+|.......++.+. .. +..-+ |+.+.+. ...+..+.+.|.|+..++
T Consensus 31 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~l~-~~-------~vdgi-Ii~~~~~-~~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 31 SILESRGYIGV-LFDANADIEREKTLLRAIG-SR-------GFDGL-ILQSFSN-PQTVQEILHQQMPVVSVD 92 (276)
T ss_dssp HHHHTTTCEEE-EEECTTCHHHHHHHHHHHH-TT-------TCSEE-EEESSCC-HHHHHHHHTTSSCEEEES
T ss_pred HHHHHCCCEEE-EEeCCCCHHHHHHHHHHHH-hC-------CCCEE-EEecCCc-HHHHHHHHHCCCCEEEEe
Confidence 34566788763 3223345433333333332 21 33334 6666555 778888888888876654
No 202
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=25.41 E-value=1.2e+02 Score=26.39 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+|+.|.+. ++-.--.+++|+..|+.++.-+.+|..+ ..||++=||+.=..
T Consensus 180 vh~~IR~~l~~~---~~~~va~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgASL~ 233 (244)
T 2v5b_A 180 VHELLRRWVRSK---LGTDIAAQLRILYGGSVTAKNARTLYQM-RDINGFLVGGASLK 233 (244)
T ss_dssp HHHHHHHHHHHH---HCHHHHHHCEEEECSCCCHHHHHHHHTS-TTCCEEEESGGGSS
T ss_pred HHHHHHHHHHHh---cChhhcCcccEEEcCCCCHhHHHHHhcC-CCCCeeeechHHHH
Confidence 344467766653 1100014689999999999999999975 34999999976443
No 203
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=25.19 E-value=2e+02 Score=26.56 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC----HHHHHHHhhcCCccc
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN----EETLDALNKQGHEVD 82 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld----e~~i~~l~~~g~~id 82 (254)
|.-.++..|++.|..+....+=.-|+..+...+++.+++ .++ |+.|||.. -..-..+.+.| .+.
T Consensus 205 n~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~----------~Dl-vittGG~s~g~~D~t~~al~~~G-~i~ 272 (411)
T 1g8l_A 205 NRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQ----------ADV-VISSGGVSVGEADYTKTILEELG-EIA 272 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH----------CSE-EEECSSSCSSSCSHHHHHHHHHS-EEE
T ss_pred chHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhc----------CCE-EEECCCCCCCCcccHHHHHHhcC-cEE
Confidence 566677778888987654444444666666666666654 367 88898773 12223333346 555
Q ss_pred EEee
Q 025365 83 AFGI 86 (254)
Q Consensus 83 ~fGV 86 (254)
.|||
T Consensus 273 f~~v 276 (411)
T 1g8l_A 273 FWKL 276 (411)
T ss_dssp EEEB
T ss_pred EEEE
Confidence 6655
No 204
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=25.15 E-value=1.3e+02 Score=23.86 Aligned_cols=8 Identities=0% Similarity=0.090 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 025365 39 ARKFFRTI 46 (254)
Q Consensus 39 ~r~~ld~~ 46 (254)
+.++|.+.
T Consensus 45 L~~~L~~~ 52 (178)
T 3iwt_A 45 IKQLLIEN 52 (178)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 44455554
No 205
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.12 E-value=1e+02 Score=21.34 Aligned_cols=54 Identities=7% Similarity=-0.054 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhcCCCcc--------EEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC
Q 025365 5 VPNFCAVALALNDLGYKAV--------GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND 65 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~--------gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ 65 (254)
-.||-++...|...|+... =||+=.=.=..-+.+++..|.+. |++..-|..|||
T Consensus 20 ~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~-------g~~~~iv~~~~g 81 (81)
T 1uta_A 20 AEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMA-------GHTNCIRLAAGG 81 (81)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHH-------CCSCCBCCCCCC
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHc-------CCCcEEEeCCCC
Confidence 4688888888888776642 23331111123455566666665 776665666654
No 206
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=25.10 E-value=96 Score=28.25 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=27.7
Q ss_pred EEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 59 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 59 kI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.|++|||+ +...+.++...| .|+.+||+.+..
T Consensus 280 pVia~GGI~~~~dv~kal~~G--AdaV~iGr~~l~ 312 (380)
T 1p4c_A 280 PVLIDSGFRRGSDIVKALALG--AEAVLLGRATLY 312 (380)
T ss_dssp CEEECSSCCSHHHHHHHHHTT--CSCEEESHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHhC--CcHhhehHHHHH
Confidence 69999998 677888888888 789999998875
No 207
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=24.92 E-value=2.7e+02 Score=22.66 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC----CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC-HHHHHHHhhcCCcc
Q 025365 7 NFCAVALALNDLGYKAVGIRLDS----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDS----GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld-e~~i~~l~~~g~~i 81 (254)
+.+++++++.+.|....-|+-.+ |.+. . ..++++-.. .++.+++.|++. ++.+..+.+.| .
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~-~-~~i~~i~~~----------~~ipv~v~ggi~~~~~~~~~l~~G--a 97 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSN-H-ELLAEVVGK----------LDVQVELSGGIRDDESLAAALATG--C 97 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCC-H-HHHHHHHHH----------CSSEEEEESSCCSHHHHHHHHHTT--C
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCCh-H-HHHHHHHHh----------cCCcEEEECCCCCHHHHHHHHHcC--C
Confidence 56788999988898776776432 3332 2 333333222 356788888876 56799998888 6
Q ss_pred cEEeecCcccc
Q 025365 82 DAFGIGTYLVT 92 (254)
Q Consensus 82 d~fGVGT~l~t 92 (254)
|..-+|+.+..
T Consensus 98 d~V~lg~~~l~ 108 (244)
T 2y88_A 98 ARVNVGTAALE 108 (244)
T ss_dssp SEEEECHHHHH
T ss_pred CEEEECchHhh
Confidence 77778887655
No 208
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=24.83 E-value=1.3e+02 Score=25.36 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=37.8
Q ss_pred HhhcCCCccEEe-eCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIR-LDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVR-lDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
+++.|+++. +. ...+|.......++.++.. +. +.-|+.+.+.+ ...+..+.+.|.|+..|+
T Consensus 29 ~~~~g~~~~-~~~~~~~d~~~q~~~i~~li~~--------~v-dgiii~~~~~~~~~~~~~~a~~~gipvV~~d 92 (316)
T 1tjy_A 29 GKALGIDVT-YDGPTEPSVSGQVQLVNNFVNQ--------GY-DAIIVSAVSPDGLCPALKRAMQRGVKILTWD 92 (316)
T ss_dssp HHHHTCEEE-ECCCSSCCHHHHHHHHHHHHHT--------TC-SEEEECCSSSSTTHHHHHHHHHTTCEEEEES
T ss_pred HHHhCCEEE-EECCCCCCHHHHHHHHHHHHHc--------CC-CEEEEeCCCHHHHHHHHHHHHHCcCEEEEec
Confidence 345676652 32 2347877766667766654 33 33366665555 567788888898877764
No 209
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=24.70 E-value=2.2e+02 Score=24.59 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCceEEEEe-CCCCHHHHHHHhhcCCccc
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVD 82 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDSGDl~~ls-~~~r~~ld~~g~~l~~~g~~~vkI~~S-~~lde~~i~~l~~~g~~id 82 (254)
....++.++++.+.|.+ .|-+=+|....+. ..+.++++.+... .+.|.+| +.++++.+..|.+.| ++
T Consensus 86 ~eei~~~i~~~~~~g~~--~i~~~gGe~p~~~~~~~~~li~~i~~~-------~~~i~~s~g~l~~e~l~~L~~ag--~~ 154 (348)
T 3iix_A 86 PEEIVERARLAVQFGAK--TIVLQSGEDPYXMPDVISDIVKEIKKM-------GVAVTLSLGEWPREYYEKWKEAG--AD 154 (348)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEEESCCGGGTTHHHHHHHHHHHTT-------SCEEEEECCCCCHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHHHHHCCCC--EEEEEeCCCCCccHHHHHHHHHHHHhc-------CceEEEecCCCCHHHHHHHHHhC--CC
Confidence 34566667777777754 6667667733333 6677777776321 4556665 567999999999988 45
Q ss_pred EEeec
Q 025365 83 AFGIG 87 (254)
Q Consensus 83 ~fGVG 87 (254)
.+-+|
T Consensus 155 ~v~i~ 159 (348)
T 3iix_A 155 RYLLR 159 (348)
T ss_dssp EEECC
T ss_pred EEeee
Confidence 55544
No 210
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=24.33 E-value=2.6e+02 Score=23.84 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=28.1
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++.+++.||+ +.+.++++. .| .|..=|||.++..
T Consensus 180 ~~Pv~vGGGI~t~e~a~~~~-~g--AD~VVVGSa~v~~ 214 (228)
T 3vzx_A 180 TSTLFYGGGIKDAETAKQYA-EH--ADVIVVGNAVYED 214 (228)
T ss_dssp SSEEEEESSCCSHHHHHHHH-TT--CSEEEECTHHHHC
T ss_pred CCCEEEeCCCCCHHHHHHHH-hC--CCEEEEChHHhcC
Confidence 5789999999 578888887 57 7888999999873
No 211
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=24.19 E-value=1.7e+02 Score=23.51 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=7.9
Q ss_pred EEeEEcCcccccc
Q 025365 104 KLVEINKQPRIKL 116 (254)
Q Consensus 104 Klv~~~g~p~~K~ 116 (254)
.++.+++.+....
T Consensus 210 ~vvg~d~~~~~~~ 222 (272)
T 3o74_A 210 QLGTFGDNQLLDF 222 (272)
T ss_dssp EEEEESCCGGGGT
T ss_pred EEEEeCChHHHHh
Confidence 4666777665544
No 212
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=24.16 E-value=2.1e+02 Score=25.77 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.3
Q ss_pred CceEEEEeCCCC-----------HHHHHHHhhcCCcccEEeecCccccc
Q 025365 56 EKMSITASNDLN-----------EETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 56 ~~vkI~~S~~ld-----------e~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
++++++. |+.| ...|+.|.++|.|||+.|+=+++...
T Consensus 184 P~a~L~~-NDyn~e~~~~k~~~~~~lv~~l~~~GvpIdgIG~Q~H~~~~ 231 (341)
T 3niy_A 184 PDAILIY-NDYSIEEINAKSNFVYNMIKELKEKGVPVDGIGFQMHIDYR 231 (341)
T ss_dssp TTSEEEE-EESSCSSSSHHHHHHHHHHHHHHHTTCCCCEEEECCEEETT
T ss_pred CCceEEe-eccccccCchHHHHHHHHHHHHHHCCCCcceEeeeeecCCC
Confidence 6787776 4444 24456677799999999999998653
No 213
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=24.09 E-value=61 Score=28.41 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..||++-||+.=..
T Consensus 188 vh~~IR~~l~~~---~~~~~a~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgASL~ 241 (255)
T 3qst_A 188 MCKVIRDILAAK---VGADIANKVRILYGGSVKPNNCNELAAC-PDVDGFLVGGASLE 241 (255)
T ss_dssp HHHHHHHHHHHH---HCHHHHHHCEEEECSCCCTTTHHHHHHS-TTCCEEEECGGGGS
T ss_pred HHHHHHHHHHHh---cChhhcCcccEEEcCCcCHhHHHHHhcC-CCCCEEEeeHHHhh
Confidence 334467776653 1100015699999999999999999875 34999999986544
No 214
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=24.01 E-value=58 Score=25.92 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=25.8
Q ss_pred CCCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecC
Q 025365 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGT 88 (254)
Q Consensus 54 g~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT 88 (254)
+.+++-|++|+|-+. +.+..+.+.|..+.++|||+
T Consensus 107 ~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 107 SATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp TSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECH
T ss_pred CCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecc
Confidence 445677999998752 34667777888888889975
No 215
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=23.72 E-value=53 Score=29.11 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 35 ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..||++-||+.-..
T Consensus 207 vh~~IR~~l~~~---~~~~~a~~vrILYGGSV~~~N~~el~~~-~diDG~LVGgASL~ 260 (271)
T 3krs_A 207 AHAFIREYVTRM---YNPQVSSNLRIIYGGSVTPDNCNELIKC-ADIDGFLVGGASLK 260 (271)
T ss_dssp HHHHHHHHHHHH---SCHHHHHHCCEEECSCCCTTTHHHHHHS-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHh---cChhhcCCccEEEcCCcCHHHHHHHhcC-CCCCEEEeeHHhhh
Confidence 334467777653 1000014689999999999999999875 34999999987554
No 216
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=23.09 E-value=2.6e+02 Score=23.11 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=35.0
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+. +-...+|.......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 26 ~~a~~~g~~l~-~~~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (306)
T 2vk2_A 26 SEAEKRGITLK-IADGQQKQENQIKAVRSFVAQ--------GVDAI-FIAPVVATGWEPVLKEAKDAEIPVFLLD 90 (306)
T ss_dssp HHHHHHTCEEE-EEECTTCHHHHHHHHHHHHHH--------TCSEE-EECCSSSSSCHHHHHHHHHTTCCEEEES
T ss_pred HHHHHcCCEEE-EeCCCCCHHHHHHHHHHHHHc--------CCCEE-EEeCCChhhHHHHHHHHHHCCCCEEEec
Confidence 34556788763 322335665544445444433 33333 55554443 467788888888876654
No 217
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=23.08 E-value=73 Score=28.36 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~~~~p~ 98 (254)
++.||++||+ +...+.+.+..| .|+-+|||.+..+...|.
T Consensus 210 ~ipVIa~GGI~~g~Dv~kalalG--AdaV~iGr~~l~t~Es~~ 250 (336)
T 1ypf_A 210 SKPIIADGGIRTNGDVAKSIRFG--ATMVMIGSLFAGHEESPG 250 (336)
T ss_dssp SSCEEEESCCCSTHHHHHHHHTT--CSEEEESGGGTTCTTSSS
T ss_pred CCcEEEeCCCCCHHHHHHHHHcC--CCEEEeChhhhccccCCC
No 218
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=22.92 E-value=2.1e+02 Score=26.01 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=27.5
Q ss_pred CceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 025365 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 56 ~~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.++.||++||+ +-..+.+.+..| .|+.+||+.++-
T Consensus 271 ~~ipVia~GGI~~g~Dv~kaLalG--A~aV~iGr~~l~ 306 (352)
T 3sgz_A 271 GKIEVYMDGGVRTGTDVLKALALG--ARCIFLGRPILW 306 (352)
T ss_dssp TSSEEEEESSCCSHHHHHHHHHTT--CSEEEESHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 36889999998 566677777788 689999997764
No 219
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=22.90 E-value=2.9e+02 Score=21.93 Aligned_cols=66 Identities=20% Similarity=0.091 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 4 Gv~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
-..++.++++++.+.|.....|=..+.+.....+++|+.+. .++.|-++.-.|.+.+....+.|+.
T Consensus 20 ~~~~~~~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~-----------~~~~ig~~~v~~~~~~~~a~~~Gad 85 (205)
T 1wa3_A 20 SVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKE-----------KGAIIGAGTVTSVEQCRKAVESGAE 85 (205)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHH-----------TTCEEEEESCCSHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-----------CCcEEEecccCCHHHHHHHHHcCCC
Confidence 35678889999988887765554455454444455555442 2344666666788888888888854
No 220
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.86 E-value=3.1e+02 Score=22.64 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 025365 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (254)
Q Consensus 13 ~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld--e~~i~~l~~~g~~id~fG 85 (254)
.++++.|+.+.-. .-.+|.......++.++.. +..-+ |+.+.+.+ ...+..+.+.|.|+..++
T Consensus 26 ~~a~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (313)
T 3m9w_A 26 KKAESLGAKVFVQ-SANGNEETQMSQIENMINR--------GVDVL-VIIPYNGQVLSNVVKEAKQEGIKVLAYD 90 (313)
T ss_dssp HHHHHTSCEEEEE-ECTTCHHHHHHHHHHHHHT--------TCSEE-EEECSSTTSCHHHHHHHHTTTCEEEEES
T ss_pred HHHHHcCCEEEEE-CCCCCHHHHHHHHHHHHHc--------CCCEE-EEeCCChhhhHHHHHHHHHCCCeEEEEC
Confidence 3456678876433 2235655544444444443 33333 66665554 477888888888876664
No 221
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=22.58 E-value=64 Score=25.90 Aligned_cols=36 Identities=6% Similarity=0.081 Sum_probs=26.6
Q ss_pred CCCceEEEEeCCCCH------HHHHHHhhcCCcccEEeecCc
Q 025365 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (254)
Q Consensus 54 g~~~vkI~~S~~lde------~~i~~l~~~g~~id~fGVGT~ 89 (254)
+..++-|++|+|.+- ..+..+.+.|..+.++|||+.
T Consensus 108 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 108 GVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp TCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred CCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccc
Confidence 456677999998753 345667778888888999875
No 222
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=22.34 E-value=1.1e+02 Score=27.18 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~ 91 (254)
.....+|+.|.+. + -.+++|+..|+.++.-+.+|..+ ..||++=||..=.
T Consensus 210 evh~~IR~~l~~~---~----a~~~rIlYGGSV~~~N~~el~~~-~dIDG~LVGgASL 259 (272)
T 4g1k_A 210 QVHAFLRGRLAAK---G----AGHVSLLYGGSVKADNAAELFGQ-PDIDGGLIGGASL 259 (272)
T ss_dssp HHHHHHHHHHHHH---T----CTTSCEEECSCCCTTTHHHHHTS-TTCCEEEECGGGG
T ss_pred HHHHHHHHHHHHh---h----cCCceEEEcCCcCHhHHHHHhcC-CCCCEEEechHhc
Confidence 3444467777664 2 36799999999999999999975 3499999997643
No 223
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=22.14 E-value=3.1e+02 Score=22.13 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=33.1
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhh-cCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK-QGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~-~g~~id~fG 85 (254)
+++.|+.+. +....+|.......++.+... +..-+ |+.+.+.++..+..+.+ .|.|+..++
T Consensus 33 ~~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~--------~vdgi-i~~~~~~~~~~~~~l~~~~~iPvV~~~ 94 (289)
T 1dbq_A 33 CFQKGYTLI-LGNAWNNLEKQRAYLSMMAQK--------RVDGL-LVMCSEYPEPLLAMLEEYRHIPMVVMD 94 (289)
T ss_dssp HHHHTCEEE-EEECTTCHHHHHHHHHHHHHT--------TCSEE-EEECSCCCHHHHHHHHHTTTSCEEEEE
T ss_pred HHHcCCeEE-EEcCCCChHHHHHHHHHHHhC--------CCCEE-EEEeccCCHHHHHHHHhccCCCEEEEc
Confidence 455688763 333335655444444444432 33333 66666666655666655 677766665
No 224
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=22.00 E-value=44 Score=29.18 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 025365 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 34 ~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t 92 (254)
.....+|+.|.+. ++-.--.+++|+..|+.+..-+.+|..+ ..+|++.||+.-..
T Consensus 182 evh~~IR~~l~~~---~~~~va~~vrIlYGGSV~~~N~~~l~~~-~diDG~LVGgAsL~ 236 (247)
T 1ney_A 182 DIHASIRKFLASK---LGDKAASELRILYGGSANGSNAVTFKDK-ADVDGFLVGGASLK 236 (247)
T ss_dssp HHHHHHHHHHHHH---HCHHHHHHCCEEEESSCCTTTGGGGTTC-TTCCEEEESGGGGS
T ss_pred HHHHHHHHHHHHh---cChhhcccceEEEcCCcCHhHHHHHHcC-CCCCeeEeehHHHH
Confidence 3444467766653 1100014689999999999999999864 34999999987665
No 225
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.91 E-value=2.3e+02 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=13.9
Q ss_pred EEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 60 ITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 60 I~~S~~lde~~i~~l~~~g~~id~f 84 (254)
|+.+.+.+...+..+.+.|.|+..+
T Consensus 123 Ii~~~~~~~~~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 123 LITGLSHAEPFERILSQHALPVVYM 147 (339)
T ss_dssp EEECSCCCTTHHHHHHHTTCCEEEE
T ss_pred EEeCCCCCHHHHHHHhcCCCCEEEE
Confidence 5555455555555566666665554
No 226
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=21.89 E-value=1.8e+02 Score=23.36 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCC-CCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND-LNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~-lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+ ...+|.......++.++.. +..-+ |+.+.+ .+...+..+.+.|.|+..++
T Consensus 27 ~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 27 GARARGYQLLIA-SSDDQPDSERQLQQLFRAR--------RCDAL-FVASCLPPEDDSYRELQDKGLPVIAID 89 (272)
T ss_dssp HHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHT--------TCSEE-EECCCCCSSCCHHHHHHHTTCCEEEES
T ss_pred HHHHCCCEEEEE-eCCCCHHHHHHHHHHHHHc--------CCCEE-EEecCccccHHHHHHHHHcCCCEEEEc
Confidence 355678877433 2334654444444444332 33333 554443 35677888888888876654
No 227
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=21.87 E-value=1.8e+02 Score=26.44 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 9 CAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 9 i~va~~l~~~G~~~~gVRlDS--GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
.+.+.+|.+.|.. .|=+|+ |+...+...+++ +.+. ++++.|++.+-.+.+.+..+.+.|+.....|
T Consensus 110 ~~~~~~lieaGvd--~I~idta~G~~~~~~~~I~~-ik~~--------~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 110 EERVKALVEAGVD--VLLIDSSHGHSEGVLQRIRE-TRAA--------YPHLEIIGGNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHTTCS--EEEEECSCTTSHHHHHHHHH-HHHH--------CTTCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhCCCC--EEEEeCCCCCCHHHHHHHHH-HHHh--------cCCCceEeeeeCCHHHHHHHHHcCCCEEEEe
Confidence 3445556666654 566666 554433332322 3332 3577888888899999999999996544444
No 228
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=21.81 E-value=2e+02 Score=26.69 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCc
Q 025365 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (254)
Q Consensus 6 ~nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~ 80 (254)
+.+.+.+.+|.+.|.....|=...|++.... +..+.+.+. ++++.|++.+..+.+.+..+.+.|+.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~-e~i~~i~~~--------~p~~pvi~g~~~t~e~a~~l~~~G~d 301 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHGHSRRVI-ETLEMIKAD--------YPDLPVVAGNVATPEGTEALIKAGAD 301 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCSSHHHH-HHHHHHHHH--------CTTSCEEEEEECSHHHHHHHHHTTCS
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCCchHHHH-HHHHHHHHH--------CCCceEEeCCcCCHHHHHHHHHcCCC
Confidence 3455666777777766444433346643332 223333332 23466888899999999999999954
No 229
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.78 E-value=1.5e+02 Score=24.29 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=5.7
Q ss_pred HHHHHHhhcCCCc
Q 025365 10 AVALALNDLGYKA 22 (254)
Q Consensus 10 ~va~~l~~~G~~~ 22 (254)
.++..|++.|+.+
T Consensus 53 ~L~~~L~~~G~~v 65 (185)
T 3rfq_A 53 LVTELLTEAGFVV 65 (185)
T ss_dssp HHHHHHHHTTEEE
T ss_pred HHHHHHHHCCCEE
Confidence 3444444444443
No 230
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=21.66 E-value=93 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=30.3
Q ss_pred CceEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 025365 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 56 ~~vkI~~S~~lde~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
..+.|.-||=-+.+.+..+.+.| +|+|=||++|+.+.
T Consensus 204 ~~~~VsESGI~t~~dv~~l~~~G--~~a~LVGealmr~~ 240 (258)
T 4a29_A 204 NVVKVAKLGISERNEIEELRKLG--VNAFLISSSLMRNP 240 (258)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTT--CCEEEECHHHHHCT
T ss_pred CCEEEEcCCCCCHHHHHHHHHCC--CCEEEECHHHhCCC
Confidence 34555566766899999999999 89999999999854
No 231
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=21.62 E-value=1.5e+02 Score=24.70 Aligned_cols=26 Identities=15% Similarity=-0.020 Sum_probs=17.5
Q ss_pred EEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 60 ITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 60 I~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
|+.+.+.+...+..+.+.|.|+..++
T Consensus 88 Ii~~~~~~~~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 88 ILLYSLKDDPIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp EESSCBTTCHHHHHHHHTTCCEEEES
T ss_pred EEeCCcCCcHHHHHHHHcCCCEEEEC
Confidence 55555566677777877887766554
No 232
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.45 E-value=1.2e+02 Score=24.14 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHH----HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCC
Q 025365 7 NFCAVALA----LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (254)
Q Consensus 7 nai~va~~----l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~ld 67 (254)
|.-.++.. |++.|+.+..+.+=.-|+..+...+++.+++ + .++ |+.|||+.
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~--------~-~Dl-VittGG~g 80 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQ--------G-ARF-IITAGGTG 80 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHT--------T-CSE-EEEESCCS
T ss_pred HHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhC--------C-CCE-EEECCCCC
Confidence 44556666 7777766544444444555555556655553 1 356 77788663
No 233
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=21.27 E-value=75 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHh
Q 025365 36 SCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALN 75 (254)
Q Consensus 36 s~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~ 75 (254)
..+++++|+++||..|.+++ .+.|..+++-+...+.++.
T Consensus 80 ~~kAk~LL~eaG~~~g~~~l-~l~l~~~~~~~~~~~a~~i 118 (229)
T 3o6p_A 80 TKKAKEYWEKAKKELGISTL-TMDILSSDADSSKKTVEFV 118 (229)
T ss_dssp HHHHHHHHHHHHHHHTCSCE-EEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCCce-EEEEEeCCChHHHHHHHHH
Confidence 57899999999987754322 4556666542233444443
No 234
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=21.27 E-value=41 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.5
Q ss_pred ceEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 025365 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (254)
Q Consensus 57 ~vkI~~S~~ld-e~~i~~l~~~g~~id~fGVGT~l~t~~ 94 (254)
++.+++-+|++ .+.+..+.+ + +|+|-||+.|+...
T Consensus 202 ~~~vIaEsGI~t~edv~~~~~--~-a~avLVG~aimr~~ 237 (251)
T 1i4n_A 202 DTVVVAESGIKDPRELKDLRG--K-VNAVLVGTSIMKAE 237 (251)
T ss_dssp TSEEEEESCCCCGGGHHHHTT--T-CSEEEECHHHHHCS
T ss_pred CCEEEEeCCCCCHHHHHHHHH--h-CCEEEEcHHHcCCc
Confidence 45577788886 999999975 4 89999999999754
No 235
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.10 E-value=1.8e+02 Score=23.83 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+ ...+|.......++.+... +..-+ |+.+.+.+...+..+.+.|.|+..++
T Consensus 33 ~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 33 EARHKGYSVLLA-NTAEDIVREREAVGQFFER--------RVDGL-ILAPSEGEHDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHT--------TCSEE-EECCCSSCCHHHHHSSCTTSCEEEES
T ss_pred HHHHCCCEEEEE-eCCCCHHHHHHHHHHHHHC--------CCCEE-EEeCCCCChHHHHHhhccCCCEEEEe
Confidence 355678776432 2233543333333333222 33334 66665557777888888887766554
No 236
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=20.92 E-value=3e+02 Score=31.06 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHhhcCCCccE-Ee---eCCC------ChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCC-CHHHH
Q 025365 3 SGVPNFCAVALALNDLGYKAVG-IR---LDSG------DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETL 71 (254)
Q Consensus 3 sGv~nai~va~~l~~~G~~~~g-VR---lDSG------Dl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~l-de~~i 71 (254)
+|+..|++.+.++.+.|....- +- .|+| |+.. -+..++.+.... -++.||+.||+ |-..+
T Consensus 700 ~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~---~~l~lv~~i~~~------~~ipviaaGGI~~g~~i 770 (2060)
T 2uva_G 700 PGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQ---PILLMYSRIRKC------SNIVLVAGSGFGGSEDT 770 (2060)
T ss_dssp CCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHH---HHHHHHHHHHTS------TTEEEEEESSCCSHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccc---hHHHHHHHHHHH------cCCCEEEeCCCCCHHHH
Confidence 5777888887777777755322 11 3343 2211 122334333221 24667777776 67778
Q ss_pred HHHh-----------hcCCcccEEeecCcccccCCCC
Q 025365 72 DALN-----------KQGHEVDAFGIGTYLVTCYAQA 97 (254)
Q Consensus 72 ~~l~-----------~~g~~id~fGVGT~l~t~~~~p 97 (254)
...+ ..| .|+.=|||.++.+..++
T Consensus 771 ~aaltg~ws~~~g~palG--AdgV~~GT~f~~t~Ea~ 805 (2060)
T 2uva_G 771 YPYLTGSWSTKFGYPPMP--FDGCMFGSRMMTAKEAH 805 (2060)
T ss_dssp HHHHHTCGGGTTTSCCCC--CSCEEESGGGGGBTTSC
T ss_pred HHHhcCcchhhcCCCCCC--CCEEEEchhhhcCcCCC
Confidence 8877 455 78889999999976554
No 237
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.83 E-value=1.4e+02 Score=23.79 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=5.7
Q ss_pred HHHHHHHhhcCCC
Q 025365 9 CAVALALNDLGYK 21 (254)
Q Consensus 9 i~va~~l~~~G~~ 21 (254)
-.++..|++.|+.
T Consensus 30 ~~l~~~l~~~G~~ 42 (164)
T 3pzy_A 30 PIITEWLAQQGFS 42 (164)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCCE
Confidence 3344444444443
No 238
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.78 E-value=1.7e+02 Score=24.20 Aligned_cols=71 Identities=18% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHh-----------
Q 025365 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALN----------- 75 (254)
Q Consensus 7 nai~va~~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~----------- 75 (254)
|.-.+.++++.+|.++..+++.+.+. ...++.+.++ +. |+++||=-...+..|.
T Consensus 45 ~~~s~~~a~~~lG~~v~~~~i~~~~~----~~~~~~l~~a----------d~-I~l~GG~~~~l~~~L~~~gl~~~l~~~ 109 (206)
T 3l4e_A 45 YVEAGKKALESLGLLVEELDIATESL----GEITTKLRKN----------DF-IYVTGGNTFFLLQELKRTGADKLILEE 109 (206)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTTSCH----HHHHHHHHHS----------SE-EEECCSCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCh----HHHHHHHHhC----------CE-EEECCCCHHHHHHHHHHCChHHHHHHH
Confidence 45556667777787777776666552 3334555553 33 7777764443333333
Q ss_pred -hcCCcccEEeecCcccc
Q 025365 76 -KQGHEVDAFGIGTYLVT 92 (254)
Q Consensus 76 -~~g~~id~fGVGT~l~t 92 (254)
++|.|+-+...|..+..
T Consensus 110 ~~~G~p~~G~sAGa~~l~ 127 (206)
T 3l4e_A 110 IAAGKLYIGESAGAVITS 127 (206)
T ss_dssp HHTTCEEEEETHHHHTTS
T ss_pred HHcCCeEEEECHHHHHhc
Confidence 24656655555655543
No 239
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=20.77 E-value=3.5e+02 Score=22.67 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=28.8
Q ss_pred ceEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 025365 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (254)
Q Consensus 57 ~vkI~~S~~l-de~~i~~l~~~g~~id~fGVGT~l~t~ 93 (254)
.+.|.+.||+ +.+.++++.+.| +|-.-|||..+..
T Consensus 75 ~~pl~vGGGIrs~e~~~~~l~~G--adkVii~t~a~~~ 110 (243)
T 4gj1_A 75 SVNLQVGGGIRSKEEVKALLDCG--VKRVVIGSMAIKD 110 (243)
T ss_dssp CSEEEEESSCCCHHHHHHHHHTT--CSEEEECTTTTTC
T ss_pred CCCeEeccccccHHHHHHHHHcC--CCEEEEccccccC
Confidence 5679999999 689999999999 4555688988774
No 240
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=20.63 E-value=3.4e+02 Score=21.95 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=13.5
Q ss_pred CCHHHHHHHhhcCCcccEEe
Q 025365 66 LNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 66 lde~~i~~l~~~g~~id~fG 85 (254)
.+...+..+.+.|.|+..++
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEES
T ss_pred CcHHHHHHHHhcCCCEEEEe
Confidence 45577777877787765554
No 241
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.55 E-value=2.6e+02 Score=23.85 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=12.8
Q ss_pred EEEeCCCCHHHHHHHhhcCCcccEE
Q 025365 60 ITASNDLNEETLDALNKQGHEVDAF 84 (254)
Q Consensus 60 I~~S~~lde~~i~~l~~~g~~id~f 84 (254)
|+.+.+.+...+..+.+.|.|+..+
T Consensus 127 I~~~~~~~~~~~~~l~~~~iPvV~i 151 (348)
T 3bil_A 127 ICVPNEECANQLEDLQKQGMPVVLV 151 (348)
T ss_dssp EECCCGGGHHHHHHHHHC-CCEEEE
T ss_pred EEeCCCCChHHHHHHHhCCCCEEEE
Confidence 4444444445556666666665444
No 242
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.43 E-value=2.5e+02 Score=22.95 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=33.7
Q ss_pred HhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH--HHHHHHhhcCCcccEEe
Q 025365 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE--ETLDALNKQGHEVDAFG 85 (254)
Q Consensus 15 l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde--~~i~~l~~~g~~id~fG 85 (254)
+++.|+.+. +-...+|.......++.++.. +..-+ |+.+.+.+. ..+..+.+.|.|+..++
T Consensus 27 ~~~~g~~~~-~~~~~~~~~~~~~~i~~l~~~--------~vdgi-Ii~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (283)
T 2ioy_A 27 AKELGYKII-VEDSQNDSSKELSNVEDLIQQ--------KVDVL-LINPVDSDAVVTAIKEANSKNIPVITID 89 (283)
T ss_dssp HHHHTCEEE-EEECTTCHHHHHHHHHHHHHT--------TCSEE-EECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHhcCcEEE-EecCCCCHHHHHHHHHHHHHc--------CCCEE-EEeCCchhhhHHHHHHHHHCCCeEEEec
Confidence 456688763 333345665555555555432 33223 555544442 46777877888876664
No 243
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=20.41 E-value=81 Score=29.13 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCC-------CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhc
Q 025365 5 VPNFCAVALALNDLGYKAVGIRLDS-------GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (254)
Q Consensus 5 v~nai~va~~l~~~G~~~~gVRlDS-------GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~ 77 (254)
...|.++++++++.|.. .||..+ ++...+..+--++|.++..++|+ .++|.=+|+..+..+.+.
T Consensus 155 ~e~a~~~a~~~k~aGa~--~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl-------~~~te~~d~~~~~~l~~~ 225 (385)
T 3nvt_A 155 YEQVAAVAESIKAKGLK--LIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGL-------GVISEIVTPADIEVALDY 225 (385)
T ss_dssp HHHHHHHHHHHHHTTCC--EEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTC-------EEEEECCSGGGHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCC--eEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCC-------EEEEecCCHHHHHHHHhh
Confidence 45788999999998865 455443 11111233444555555555555 455666999999999754
Q ss_pred CCcccEEeecCccccc
Q 025365 78 GHEVDAFGIGTYLVTC 93 (254)
Q Consensus 78 g~~id~fGVGT~l~t~ 93 (254)
+|.|=||+..+++
T Consensus 226 ---vd~lkIgs~~~~n 238 (385)
T 3nvt_A 226 ---VDVIQIGARNMQN 238 (385)
T ss_dssp ---CSEEEECGGGTTC
T ss_pred ---CCEEEECcccccC
Confidence 9999999999885
No 244
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.27 E-value=2.9e+02 Score=22.45 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCH--HHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE--ETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDS-GDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde--~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+. + .|+ +|.......++.++.. +..-+ |+.+.+.+. ..+..+.+.|.|+..++
T Consensus 27 ~~~~~g~~~~-~-~~~~~~~~~~~~~~~~l~~~--------~vdgi-I~~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (290)
T 2fn9_A 27 RAEQLGYEAT-I-FDSQNDTAKESAHFDAIIAA--------GYDAI-IFNPTDADGSIANVKRAKEAGIPVFCVD 90 (290)
T ss_dssp HHHHTTCEEE-E-EECTTCHHHHHHHHHHHHHT--------TCSEE-EECCSCTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEEE-E-eCCCCCHHHHHHHHHHHHHc--------CCCEE-EEecCChHHHHHHHHHHHHCCCeEEEEe
Confidence 3456788763 3 344 5665544444444432 33223 555544443 45777777887766654
No 245
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=20.20 E-value=1.9e+02 Score=23.39 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=31.1
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHH-HHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLD-ALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~-~l~~~g~~id~fG 85 (254)
++++.|+.+. +-...+|.......++.+... +..-+ |+.+ .+...+. .+.+.|.|+..++
T Consensus 33 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~--------~~dgi-Ii~~--~~~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 33 VALAHGYQVL-IGNSDNDIKKAQGYLATFVSH--------NCTGM-ISTA--FNENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHTTCCEE-EEECTTCHHHHHHHHHHHHHT--------TCSEE-EECG--GGHHHHHHHHHHC-CCEEEGG
T ss_pred HHHHCCCEEE-EEeCCCCHHHHHHHHHHHHhC--------CCCEE-EEec--CChHHHHHHHHcCCCCEEEEe
Confidence 3556788764 322233543333333333322 33223 4444 6788888 8888887765543
No 246
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.10 E-value=1.2e+02 Score=24.96 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCceEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 025365 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (254)
Q Consensus 14 ~l~~~G~~~~gVRlDSGDl~~ls~~~r~~ld~~g~~l~~~g~~~vkI~~S~~lde~~i~~l~~~g~~id~fG 85 (254)
++++.|+.+.-+ ++.+-.....++.+++.+. +..-+ |+.+...+...+..+.+.|.|+..++
T Consensus 35 ~a~~~g~~~~~~--~~~~~~~~~~~~~~~l~~~-------~vdgi-Ii~~~~~~~~~~~~l~~~~iPvV~i~ 96 (288)
T 3gv0_A 35 VLSTTQYHLVVT--PHIHAKDSMVPIRYILETG-------SADGV-IISKIEPNDPRVRFMTERNMPFVTHG 96 (288)
T ss_dssp HHTTSSCEEEEC--CBSSGGGTTHHHHHHHHHT-------CCSEE-EEESCCTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHcCCEEEEe--cCCcchhHHHHHHHHHHcC-------CccEE-EEecCCCCcHHHHHHhhCCCCEEEEC
Confidence 355677766333 3332222234455555442 33334 67666667778888988898876554
Done!