Query 025366
Match_columns 254
No_of_seqs 351 out of 2208
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:06:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.4E-40 7.5E-45 271.5 13.0 167 76-252 1-180 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-39 2.7E-44 274.5 14.6 167 76-252 2-174 (248)
3 COG1125 OpuBA ABC-type proline 100.0 2.6E-38 5.7E-43 265.7 11.5 167 77-253 1-180 (309)
4 COG1124 DppF ABC-type dipeptid 100.0 9.6E-38 2.1E-42 261.4 14.2 174 75-253 1-186 (252)
5 COG2884 FtsE Predicted ATPase 100.0 1.2E-37 2.6E-42 251.5 13.0 168 77-253 1-182 (223)
6 COG3839 MalK ABC-type sugar tr 100.0 1.6E-37 3.4E-42 275.1 13.9 170 75-252 1-177 (338)
7 COG1131 CcmA ABC-type multidru 100.0 6.8E-37 1.5E-41 269.9 16.3 169 75-253 2-181 (293)
8 COG1136 SalX ABC-type antimicr 100.0 6.8E-37 1.5E-41 257.2 15.3 171 77-253 1-187 (226)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.9E-37 1.9E-41 260.0 15.3 170 75-253 2-184 (254)
10 COG1135 AbcC ABC-type metal io 100.0 6.2E-37 1.4E-41 263.9 13.3 171 77-253 1-186 (339)
11 COG3842 PotA ABC-type spermidi 100.0 7.7E-37 1.7E-41 272.1 11.9 168 75-252 3-180 (352)
12 COG1127 Ttg2A ABC-type transpo 100.0 2E-36 4.2E-41 252.8 12.5 169 75-253 6-190 (263)
13 COG4555 NatA ABC-type Na+ tran 100.0 4.4E-36 9.5E-41 244.5 9.4 167 77-252 1-177 (245)
14 COG1120 FepC ABC-type cobalami 100.0 1.9E-35 4.2E-40 252.9 13.9 167 77-253 2-183 (258)
15 COG3638 ABC-type phosphate/pho 100.0 3E-35 6.5E-40 245.1 12.6 168 76-253 2-192 (258)
16 PRK13537 nodulation ABC transp 100.0 9.6E-35 2.1E-39 257.9 16.2 169 75-253 5-183 (306)
17 PRK13536 nodulation factor exp 100.0 1.5E-34 3.2E-39 259.8 16.8 169 75-253 39-217 (340)
18 PRK11650 ugpC glycerol-3-phosp 100.0 1.3E-34 2.9E-39 261.6 15.4 169 75-253 1-179 (356)
19 COG1122 CbiO ABC-type cobalt t 100.0 1.4E-34 3E-39 246.6 14.5 170 76-253 2-183 (235)
20 TIGR02314 ABC_MetN D-methionin 100.0 2.7E-34 5.9E-39 258.0 15.9 171 77-253 1-185 (343)
21 PRK11432 fbpC ferric transport 100.0 2.9E-34 6.3E-39 258.9 16.0 170 74-253 3-181 (351)
22 TIGR03265 PhnT2 putative 2-ami 100.0 3.1E-34 6.7E-39 259.0 15.4 169 75-253 2-179 (353)
23 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-34 2.4E-39 249.6 11.7 166 77-252 2-181 (345)
24 TIGR00960 3a0501s02 Type II (G 100.0 4.5E-34 9.8E-39 241.4 14.9 169 77-253 1-183 (216)
25 COG1117 PstB ABC-type phosphat 100.0 5.1E-34 1.1E-38 234.4 13.7 170 75-253 5-194 (253)
26 PRK09452 potA putrescine/sperm 100.0 5.8E-34 1.3E-38 258.7 15.6 171 73-253 10-189 (375)
27 PRK11000 maltose/maltodextrin 100.0 8.3E-34 1.8E-38 257.8 15.8 169 75-253 1-178 (369)
28 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-33 2.5E-38 250.8 15.7 167 77-253 4-180 (303)
29 cd03259 ABC_Carb_Solutes_like 100.0 8.2E-34 1.8E-38 239.3 14.1 166 78-253 1-175 (213)
30 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.7E-34 1.9E-38 239.9 14.2 170 78-253 1-185 (218)
31 PRK11629 lolD lipoprotein tran 100.0 1.9E-33 4.1E-38 240.3 16.4 172 76-253 4-190 (233)
32 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-33 2.7E-38 239.4 14.8 166 78-253 1-176 (220)
33 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.4E-33 3.1E-38 239.0 14.7 170 78-253 1-176 (220)
34 COG4525 TauB ABC-type taurine 100.0 7.6E-34 1.6E-38 230.5 12.0 170 75-252 1-176 (259)
35 TIGR02673 FtsE cell division A 100.0 1.8E-33 3.9E-38 237.3 14.9 167 77-253 1-182 (214)
36 COG1137 YhbG ABC-type (unclass 100.0 7.4E-35 1.6E-39 237.1 6.1 168 75-252 2-183 (243)
37 PRK10584 putative ABC transpor 100.0 4.9E-33 1.1E-37 236.9 16.7 173 75-253 4-191 (228)
38 cd03269 ABC_putative_ATPase Th 100.0 2.6E-33 5.6E-38 235.8 14.7 166 78-253 1-173 (210)
39 PRK11607 potG putrescine trans 100.0 3.1E-33 6.6E-38 254.3 16.3 169 74-252 16-193 (377)
40 cd03261 ABC_Org_Solvent_Resist 100.0 2E-33 4.4E-38 240.4 14.3 166 78-253 1-181 (235)
41 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-33 4.9E-38 253.9 15.1 167 77-253 5-182 (362)
42 PRK11022 dppD dipeptide transp 100.0 4.4E-33 9.6E-38 249.2 16.7 178 75-253 1-198 (326)
43 PRK11248 tauB taurine transpor 100.0 3.5E-33 7.5E-38 242.0 15.5 167 77-253 1-173 (255)
44 TIGR03522 GldA_ABC_ATP gliding 100.0 3.2E-33 6.9E-38 247.7 15.5 167 77-253 2-178 (301)
45 cd03266 ABC_NatA_sodium_export 100.0 2.9E-33 6.3E-38 236.6 14.4 171 77-253 1-181 (218)
46 PRK11153 metN DL-methionine tr 100.0 3.6E-33 7.8E-38 251.4 15.7 171 77-253 1-185 (343)
47 TIGR02211 LolD_lipo_ex lipopro 100.0 5.1E-33 1.1E-37 235.6 15.4 170 77-252 1-185 (221)
48 cd03258 ABC_MetN_methionine_tr 100.0 4.6E-33 9.9E-38 237.8 14.7 171 77-253 1-185 (233)
49 cd03263 ABC_subfamily_A The AB 100.0 4.2E-33 9E-38 236.0 14.4 168 78-253 1-178 (220)
50 COG4152 ABC-type uncharacteriz 100.0 1.3E-33 2.8E-38 236.1 10.7 166 77-252 2-174 (300)
51 PRK13637 cbiO cobalt transport 100.0 7.7E-33 1.7E-37 243.7 16.2 171 77-253 2-189 (287)
52 cd03301 ABC_MalK_N The N-termi 100.0 4.8E-33 1E-37 234.5 14.3 166 78-253 1-175 (213)
53 cd03296 ABC_CysA_sulfate_impor 100.0 7.1E-33 1.5E-37 237.7 14.9 167 77-253 2-181 (239)
54 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.2E-33 1.8E-37 236.9 15.1 167 77-253 1-177 (236)
55 cd03225 ABC_cobalt_CbiO_domain 100.0 5.7E-33 1.2E-37 233.8 13.8 167 79-253 1-179 (211)
56 PRK11264 putative amino-acid A 100.0 1E-32 2.2E-37 238.1 15.6 169 75-253 1-189 (250)
57 PRK11308 dppF dipeptide transp 100.0 1.3E-32 2.9E-37 246.1 16.8 175 75-253 3-199 (327)
58 PRK10851 sulfate/thiosulfate t 100.0 8.3E-33 1.8E-37 249.7 15.6 167 77-253 2-181 (353)
59 PRK10908 cell division protein 100.0 7.9E-33 1.7E-37 234.8 14.5 167 77-253 1-182 (222)
60 PRK09536 btuD corrinoid ABC tr 100.0 7.7E-33 1.7E-37 253.0 15.3 169 75-253 1-184 (402)
61 PRK11831 putative ABC transpor 100.0 1.2E-32 2.6E-37 240.4 15.6 169 75-253 5-188 (269)
62 cd03235 ABC_Metallic_Cations A 100.0 5.1E-33 1.1E-37 234.5 12.7 167 79-253 1-177 (213)
63 cd03226 ABC_cobalt_CbiO_domain 100.0 9.2E-33 2E-37 231.7 14.2 161 79-253 1-171 (205)
64 cd03218 ABC_YhbG The ABC trans 100.0 8.9E-33 1.9E-37 235.8 14.3 166 78-253 1-178 (232)
65 PRK15079 oligopeptide ABC tran 100.0 1.4E-32 3E-37 246.3 16.2 175 75-253 6-206 (331)
66 TIGR03608 L_ocin_972_ABC putat 100.0 8.8E-33 1.9E-37 231.7 13.9 164 80-253 1-179 (206)
67 PRK13538 cytochrome c biogenes 100.0 1.5E-32 3.3E-37 230.3 15.2 164 77-253 1-174 (204)
68 COG0410 LivF ABC-type branched 100.0 6E-33 1.3E-37 231.0 12.5 171 75-253 1-181 (237)
69 cd03292 ABC_FtsE_transporter F 100.0 1.2E-32 2.6E-37 232.2 14.6 167 78-253 1-181 (214)
70 cd03264 ABC_drug_resistance_li 100.0 1.1E-32 2.3E-37 232.2 14.3 165 78-253 1-175 (211)
71 PRK10070 glycine betaine trans 100.0 1.5E-32 3.1E-37 251.1 16.1 152 96-253 43-209 (400)
72 cd03268 ABC_BcrA_bacitracin_re 100.0 1.5E-32 3.2E-37 230.8 14.7 162 78-253 1-171 (208)
73 cd03262 ABC_HisP_GlnQ_permease 100.0 1.2E-32 2.6E-37 232.0 14.1 166 78-253 1-180 (213)
74 PRK13634 cbiO cobalt transport 100.0 1.7E-32 3.8E-37 241.8 15.4 171 77-253 2-190 (290)
75 PRK13647 cbiO cobalt transport 100.0 1.7E-32 3.6E-37 240.1 14.9 169 76-253 3-183 (274)
76 cd03257 ABC_NikE_OppD_transpor 100.0 2.6E-32 5.7E-37 232.1 15.6 173 77-253 1-190 (228)
77 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.9E-32 4.2E-37 235.4 14.9 166 78-253 1-180 (242)
78 PRK13641 cbiO cobalt transport 100.0 2.7E-32 5.8E-37 240.3 15.9 171 77-253 2-190 (287)
79 PRK13651 cobalt transporter AT 100.0 2.2E-32 4.9E-37 242.5 15.3 171 77-253 2-210 (305)
80 PRK15093 antimicrobial peptide 100.0 3.4E-32 7.4E-37 243.9 16.6 178 75-253 1-203 (330)
81 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-32 5.9E-37 232.2 15.2 165 78-253 1-186 (227)
82 PRK09473 oppD oligopeptide tra 100.0 4E-32 8.7E-37 243.3 16.9 176 74-253 9-206 (330)
83 PRK11124 artP arginine transpo 100.0 2.8E-32 6.1E-37 234.3 15.1 167 77-253 2-186 (242)
84 PRK10895 lipopolysaccharide AB 100.0 2.2E-32 4.7E-37 234.8 14.4 169 75-253 1-182 (241)
85 TIGR02315 ABC_phnC phosphonate 100.0 1.5E-32 3.2E-37 236.0 13.2 167 77-253 1-190 (243)
86 PRK13638 cbiO cobalt transport 100.0 2.2E-32 4.7E-37 238.9 14.5 167 77-253 1-181 (271)
87 TIGR01188 drrA daunorubicin re 100.0 1.4E-32 3.1E-37 243.6 13.5 159 85-253 1-169 (302)
88 PRK13652 cbiO cobalt transport 100.0 4E-32 8.8E-37 238.0 16.1 170 75-253 1-182 (277)
89 PRK13650 cbiO cobalt transport 100.0 2.6E-32 5.7E-37 239.4 14.9 171 76-253 3-185 (279)
90 PRK13539 cytochrome c biogenes 100.0 3.7E-32 8.1E-37 228.5 15.2 163 77-253 2-172 (207)
91 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-32 5E-37 233.8 14.1 166 78-253 1-188 (236)
92 PRK13643 cbiO cobalt transport 100.0 2.9E-32 6.2E-37 240.2 15.0 171 77-253 1-189 (288)
93 cd03256 ABC_PhnC_transporter A 100.0 3.8E-32 8.3E-37 233.1 15.1 166 78-253 1-189 (241)
94 PRK14247 phosphate ABC transpo 100.0 4.9E-32 1.1E-36 233.8 15.8 172 75-253 1-191 (250)
95 PRK09493 glnQ glutamine ABC tr 100.0 3.6E-32 7.7E-37 233.4 14.8 167 77-253 1-181 (240)
96 cd03224 ABC_TM1139_LivF_branch 100.0 3.3E-32 7.1E-37 230.8 14.2 164 78-253 1-177 (222)
97 TIGR00972 3a0107s01c2 phosphat 100.0 5.4E-32 1.2E-36 233.3 15.8 166 77-253 1-189 (247)
98 PRK11247 ssuB aliphatic sulfon 100.0 4.3E-32 9.3E-37 235.3 15.1 162 76-253 11-178 (257)
99 COG0411 LivG ABC-type branched 100.0 7.8E-33 1.7E-37 232.0 9.8 170 76-253 3-194 (250)
100 PRK14267 phosphate ABC transpo 100.0 6.4E-32 1.4E-36 233.6 15.9 170 74-253 1-194 (253)
101 PRK11701 phnK phosphonate C-P 100.0 8E-32 1.7E-36 233.7 16.3 169 76-252 5-195 (258)
102 PRK13636 cbiO cobalt transport 100.0 5.7E-32 1.2E-36 237.7 15.5 169 76-253 4-186 (283)
103 PRK13635 cbiO cobalt transport 100.0 5.8E-32 1.3E-36 237.2 15.4 170 76-253 4-185 (279)
104 PRK14268 phosphate ABC transpo 100.0 7.7E-32 1.7E-36 233.8 15.8 172 74-253 9-199 (258)
105 COG1123 ATPase components of v 100.0 4.3E-32 9.4E-37 251.5 15.0 177 74-253 277-474 (539)
106 PRK10247 putative ABC transpor 100.0 1.3E-31 2.7E-36 228.0 16.6 165 76-253 6-182 (225)
107 PRK13644 cbiO cobalt transport 100.0 5.1E-32 1.1E-36 237.0 14.5 168 77-253 1-181 (274)
108 PRK13548 hmuV hemin importer A 100.0 7.1E-32 1.5E-36 234.1 15.3 167 77-253 2-185 (258)
109 COG0444 DppD ABC-type dipeptid 100.0 5E-32 1.1E-36 235.7 14.2 177 77-253 1-198 (316)
110 TIGR03411 urea_trans_UrtD urea 100.0 1.1E-31 2.3E-36 230.6 15.9 168 76-253 1-188 (242)
111 TIGR02769 nickel_nikE nickel i 100.0 9.5E-32 2.1E-36 234.2 15.8 173 77-253 2-195 (265)
112 TIGR01189 ccmA heme ABC export 100.0 9.7E-32 2.1E-36 224.4 15.2 162 78-253 1-172 (198)
113 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.6E-32 9.9E-37 236.7 13.6 165 79-253 26-205 (269)
114 PRK15112 antimicrobial peptide 100.0 9.4E-32 2E-36 234.5 15.4 174 76-253 3-194 (267)
115 PRK10619 histidine/lysine/argi 100.0 1E-31 2.2E-36 232.9 15.5 168 76-253 4-197 (257)
116 TIGR02324 CP_lyasePhnL phospho 100.0 1.7E-31 3.6E-36 226.9 16.2 171 77-253 1-194 (224)
117 PRK13543 cytochrome c biogenes 100.0 2.3E-31 5.1E-36 224.7 17.0 165 76-253 10-182 (214)
118 PRK13633 cobalt transporter AT 100.0 9.5E-32 2.1E-36 236.0 15.0 172 76-253 3-189 (280)
119 TIGR03410 urea_trans_UrtE urea 100.0 7.8E-32 1.7E-36 229.8 14.0 163 78-253 1-176 (230)
120 PRK13646 cbiO cobalt transport 100.0 9.2E-32 2E-36 236.8 14.8 171 77-253 2-190 (286)
121 PRK14241 phosphate transporter 100.0 1.6E-31 3.5E-36 231.8 16.1 171 76-253 3-193 (258)
122 PRK14242 phosphate transporter 100.0 2E-31 4.3E-36 230.5 16.5 171 75-253 4-194 (253)
123 PRK14250 phosphate ABC transpo 100.0 1.3E-31 2.9E-36 230.2 14.9 164 75-253 1-176 (241)
124 PRK14273 phosphate ABC transpo 100.0 1.8E-31 4E-36 230.9 15.8 168 75-253 5-195 (254)
125 PRK13540 cytochrome c biogenes 100.0 2.6E-31 5.7E-36 222.2 16.1 162 77-253 1-172 (200)
126 cd03231 ABC_CcmA_heme_exporter 100.0 1.5E-31 3.2E-36 223.9 14.5 160 78-253 1-170 (201)
127 PRK13632 cbiO cobalt transport 100.0 1.7E-31 3.6E-36 233.4 15.3 170 76-253 6-187 (271)
128 TIGR01186 proV glycine betaine 100.0 1E-31 2.2E-36 242.9 14.2 158 85-252 1-173 (363)
129 TIGR02323 CP_lyasePhnK phospho 100.0 2.4E-31 5.2E-36 230.0 15.9 170 76-253 2-193 (253)
130 PRK13631 cbiO cobalt transport 100.0 2.6E-31 5.6E-36 237.2 16.4 172 75-252 19-220 (320)
131 PRK14262 phosphate ABC transpo 100.0 2.5E-31 5.4E-36 229.4 15.7 171 75-253 1-191 (250)
132 PRK11231 fecE iron-dicitrate t 100.0 1.7E-31 3.6E-36 231.3 14.6 167 77-253 2-183 (255)
133 PRK14235 phosphate transporter 100.0 3.3E-31 7.1E-36 231.1 16.4 171 75-253 17-208 (267)
134 PRK10419 nikE nickel transport 100.0 2.7E-31 5.9E-36 231.7 15.8 173 75-253 1-196 (268)
135 TIGR03005 ectoine_ehuA ectoine 100.0 1.7E-31 3.7E-36 230.8 14.4 166 78-253 1-191 (252)
136 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.8E-31 3.8E-36 224.7 14.0 164 78-253 1-173 (211)
137 PRK13649 cbiO cobalt transport 100.0 2.4E-31 5.3E-36 233.3 15.4 170 78-253 3-190 (280)
138 PRK14270 phosphate ABC transpo 100.0 3.9E-31 8.5E-36 228.4 16.4 168 75-253 2-192 (251)
139 TIGR01277 thiQ thiamine ABC tr 100.0 3.6E-31 7.8E-36 223.4 15.2 164 78-253 1-173 (213)
140 PRK13639 cbiO cobalt transport 100.0 2.5E-31 5.5E-36 232.7 14.7 168 77-253 1-182 (275)
141 PRK14237 phosphate transporter 100.0 5.7E-31 1.2E-35 229.6 16.8 171 75-253 18-208 (267)
142 PRK10418 nikD nickel transport 100.0 6.3E-31 1.4E-35 227.6 17.0 166 77-253 4-185 (254)
143 PRK10575 iron-hydroxamate tran 100.0 2.4E-31 5.3E-36 231.6 14.4 168 76-253 10-192 (265)
144 TIGR03415 ABC_choXWV_ATP choli 100.0 3.1E-31 6.7E-36 240.9 15.5 162 82-253 29-209 (382)
145 PRK10744 pstB phosphate transp 100.0 4.4E-31 9.5E-36 229.4 15.9 171 75-253 11-201 (260)
146 PRK11300 livG leucine/isoleuci 100.0 3.3E-31 7.1E-36 229.3 14.9 168 76-253 4-198 (255)
147 PRK13648 cbiO cobalt transport 100.0 4.2E-31 9.1E-36 230.6 15.6 171 75-253 5-187 (269)
148 PRK10261 glutathione transport 100.0 3.4E-31 7.3E-36 255.5 16.4 176 74-253 9-213 (623)
149 PRK14274 phosphate ABC transpo 100.0 5.9E-31 1.3E-35 228.4 16.4 171 75-253 10-200 (259)
150 PRK09544 znuC high-affinity zi 100.0 4.9E-31 1.1E-35 228.0 15.7 159 76-252 3-164 (251)
151 PRK14239 phosphate transporter 100.0 4.9E-31 1.1E-35 227.8 15.8 169 76-253 4-193 (252)
152 PRK11614 livF leucine/isoleuci 100.0 2.2E-31 4.7E-36 228.1 13.4 167 75-253 3-182 (237)
153 TIGR01166 cbiO cobalt transpor 100.0 2.6E-31 5.7E-36 220.3 13.2 152 96-253 7-172 (190)
154 PRK13645 cbiO cobalt transport 100.0 4.1E-31 8.9E-36 232.9 15.1 172 76-253 5-195 (289)
155 PRK14245 phosphate ABC transpo 100.0 7.7E-31 1.7E-35 226.5 16.3 170 76-253 2-191 (250)
156 TIGR03740 galliderm_ABC gallid 100.0 5.7E-31 1.2E-35 223.5 15.2 162 78-253 1-169 (223)
157 cd03267 ABC_NatA_like Similar 100.0 3.1E-31 6.7E-36 227.2 13.6 153 96-253 36-198 (236)
158 PRK14253 phosphate ABC transpo 100.0 7.2E-31 1.6E-35 226.5 15.9 168 75-253 1-190 (249)
159 PRK10771 thiQ thiamine transpo 100.0 4.6E-31 1E-35 225.5 14.6 164 77-253 1-174 (232)
160 PRK09984 phosphonate/organopho 100.0 4.6E-31 1E-35 229.4 14.9 168 76-253 3-197 (262)
161 PRK14240 phosphate transporter 100.0 8.3E-31 1.8E-35 226.2 16.2 171 75-253 1-191 (250)
162 TIGR01978 sufC FeS assembly AT 100.0 5E-31 1.1E-35 226.4 14.7 166 78-253 1-189 (243)
163 PRK10762 D-ribose transporter 100.0 2.4E-31 5.1E-36 250.9 13.9 168 76-253 3-186 (501)
164 PRK13642 cbiO cobalt transport 100.0 6E-31 1.3E-35 230.6 15.4 171 76-253 3-185 (277)
165 COG3840 ThiQ ABC-type thiamine 100.0 1.4E-31 3E-36 215.1 10.2 164 77-252 1-173 (231)
166 PRK14259 phosphate ABC transpo 100.0 6.9E-31 1.5E-35 229.3 15.4 169 76-253 12-199 (269)
167 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.7E-31 3.6E-36 227.2 11.2 163 77-253 22-187 (224)
168 PRK13549 xylose transporter AT 100.0 3.1E-31 6.7E-36 250.4 14.2 169 75-253 3-188 (506)
169 PRK14269 phosphate ABC transpo 100.0 9E-31 2E-35 225.6 15.9 169 77-253 2-187 (246)
170 PRK13640 cbiO cobalt transport 100.0 6.4E-31 1.4E-35 231.0 15.1 169 77-253 5-188 (282)
171 TIGR02982 heterocyst_DevA ABC 100.0 6.4E-31 1.4E-35 222.8 14.5 171 77-253 1-186 (220)
172 COG4181 Predicted ABC-type tra 100.0 5.8E-31 1.3E-35 209.7 13.2 170 76-251 5-189 (228)
173 PRK15439 autoinducer 2 ABC tra 100.0 5.1E-31 1.1E-35 249.1 15.3 166 74-253 8-185 (510)
174 PRK14251 phosphate ABC transpo 100.0 1E-30 2.2E-35 225.7 15.9 170 76-253 3-192 (251)
175 PRK13541 cytochrome c biogenes 100.0 1.2E-30 2.6E-35 217.3 15.7 160 77-252 1-167 (195)
176 cd03300 ABC_PotA_N PotA is an 100.0 8.4E-31 1.8E-35 223.9 15.1 166 78-253 1-175 (232)
177 PRK14256 phosphate ABC transpo 100.0 1.5E-30 3.3E-35 224.9 16.8 171 76-253 3-193 (252)
178 COG4175 ProV ABC-type proline/ 100.0 1.2E-31 2.6E-36 231.5 9.7 171 75-251 2-207 (386)
179 TIGR03873 F420-0_ABC_ATP propo 100.0 6.5E-31 1.4E-35 227.7 14.2 166 78-253 2-182 (256)
180 PRK14254 phosphate ABC transpo 100.0 1.3E-30 2.7E-35 229.4 16.1 170 75-253 37-225 (285)
181 PRK14249 phosphate ABC transpo 100.0 1.8E-30 3.9E-35 224.3 16.6 167 76-253 3-192 (251)
182 PRK10253 iron-enterobactin tra 100.0 5.8E-31 1.3E-35 229.2 13.5 169 75-253 5-188 (265)
183 COG4608 AppF ABC-type oligopep 100.0 5.4E-31 1.2E-35 224.9 12.8 145 75-253 2-154 (268)
184 COG1123 ATPase components of v 100.0 9.4E-31 2E-35 242.6 15.4 178 76-253 4-199 (539)
185 PRK14260 phosphate ABC transpo 100.0 1.7E-30 3.7E-35 225.6 16.0 171 75-253 5-195 (259)
186 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-30 2.5E-35 223.8 14.6 166 78-253 1-175 (237)
187 PRK14272 phosphate ABC transpo 100.0 2.2E-30 4.8E-35 223.7 16.2 167 77-253 4-193 (252)
188 PRK14243 phosphate transporter 100.0 2.2E-30 4.7E-35 225.6 16.2 170 75-253 8-196 (264)
189 PRK09700 D-allose transporter 100.0 7.3E-31 1.6E-35 248.0 14.2 168 76-253 4-190 (510)
190 PRK14261 phosphate ABC transpo 100.0 2.2E-30 4.7E-35 224.0 15.9 172 74-253 3-194 (253)
191 PRK14265 phosphate ABC transpo 100.0 2.4E-30 5.3E-35 226.4 16.3 173 72-253 15-206 (274)
192 cd03299 ABC_ModC_like Archeal 100.0 1.7E-30 3.6E-35 222.5 14.8 165 78-253 1-174 (235)
193 PRK14248 phosphate ABC transpo 100.0 2.9E-30 6.4E-35 225.1 16.6 171 75-253 19-209 (268)
194 PRK10261 glutathione transport 100.0 1.6E-30 3.6E-35 250.8 16.5 175 75-253 311-508 (623)
195 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-30 3.3E-35 219.6 14.2 160 78-253 2-176 (214)
196 PRK11144 modC molybdate transp 100.0 1.7E-30 3.8E-35 234.8 15.3 158 77-253 1-173 (352)
197 PRK14246 phosphate ABC transpo 100.0 2.8E-30 6.2E-35 224.0 15.7 169 75-253 8-198 (257)
198 PRK15134 microcin C ABC transp 100.0 2.3E-30 4.9E-35 245.7 16.2 174 76-253 4-201 (529)
199 PRK15056 manganese/iron transp 100.0 1.9E-30 4E-35 226.9 14.3 170 77-253 6-187 (272)
200 PRK14255 phosphate ABC transpo 100.0 4.9E-30 1.1E-34 221.6 16.4 169 76-253 4-193 (252)
201 PRK14258 phosphate ABC transpo 100.0 4.9E-30 1.1E-34 222.9 16.5 168 75-253 5-195 (261)
202 PRK14275 phosphate ABC transpo 100.0 4.3E-30 9.3E-35 226.2 16.2 172 74-253 36-227 (286)
203 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-30 5.5E-35 244.9 15.6 167 78-253 1-213 (520)
204 PRK14236 phosphate transporter 100.0 5.4E-30 1.2E-34 224.0 16.6 172 74-253 22-213 (272)
205 TIGR02142 modC_ABC molybdenum 100.0 2.8E-30 6E-35 233.6 15.1 158 82-253 4-176 (354)
206 PRK13547 hmuV hemin importer A 100.0 2.3E-30 4.9E-35 226.3 13.7 167 77-253 1-199 (272)
207 PRK11288 araG L-arabinose tran 100.0 1.8E-30 4E-35 244.8 14.0 169 75-253 2-185 (501)
208 cd03233 ABC_PDR_domain1 The pl 100.0 5.3E-30 1.2E-34 214.7 14.7 154 76-253 2-163 (202)
209 PRK14271 phosphate ABC transpo 100.0 5.6E-30 1.2E-34 224.3 15.5 168 75-253 19-208 (276)
210 PRK14252 phosphate ABC transpo 100.0 1E-29 2.2E-34 221.4 16.5 170 73-253 12-206 (265)
211 COG4598 HisP ABC-type histidin 100.0 1.4E-30 3E-35 209.2 10.0 169 75-251 4-195 (256)
212 PRK14238 phosphate transporter 100.0 7.9E-30 1.7E-34 222.8 15.6 170 76-253 23-212 (271)
213 cd03223 ABCD_peroxisomal_ALDP 100.0 4.7E-30 1E-34 208.7 13.2 135 78-253 1-136 (166)
214 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-29 2.6E-34 219.2 16.4 170 75-253 5-196 (252)
215 PRK10938 putative molybdenum t 100.0 3.2E-30 6.9E-35 242.6 13.8 162 76-253 2-180 (490)
216 cd03230 ABC_DR_subfamily_A Thi 100.0 4.7E-30 1E-34 210.0 13.0 138 78-253 1-140 (173)
217 TIGR02770 nickel_nikD nickel i 100.0 5.1E-30 1.1E-34 218.8 13.5 154 96-253 1-170 (230)
218 cd03215 ABC_Carb_Monos_II This 100.0 8E-30 1.7E-34 210.2 14.2 136 76-253 3-149 (182)
219 PRK14263 phosphate ABC transpo 100.0 1.3E-29 2.7E-34 220.4 16.0 167 75-253 6-194 (261)
220 cd03213 ABCG_EPDR ABCG transpo 100.0 7.6E-30 1.7E-34 212.5 14.0 144 77-253 3-156 (194)
221 cd03229 ABC_Class3 This class 100.0 1.6E-30 3.5E-35 213.6 9.8 143 78-253 1-145 (178)
222 TIGR03269 met_CoM_red_A2 methy 100.0 7.8E-30 1.7E-34 241.5 15.9 171 75-252 277-471 (520)
223 cd03245 ABCC_bacteriocin_expor 100.0 5.2E-30 1.1E-34 217.1 12.9 161 78-253 3-185 (220)
224 TIGR02633 xylG D-xylose ABC tr 100.0 5.5E-30 1.2E-34 241.5 14.3 167 77-253 1-186 (500)
225 cd03248 ABCC_TAP TAP, the Tran 100.0 2.7E-30 5.9E-35 219.7 11.0 171 74-253 8-195 (226)
226 PRK15134 microcin C ABC transp 100.0 6E-30 1.3E-34 242.8 14.5 174 75-253 273-470 (529)
227 PRK14244 phosphate ABC transpo 100.0 1.2E-29 2.6E-34 219.2 15.1 168 78-253 6-194 (251)
228 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-30 3.9E-35 222.3 9.7 161 78-253 1-183 (237)
229 cd03244 ABCC_MRP_domain2 Domai 100.0 8.8E-30 1.9E-34 215.8 13.7 160 78-253 3-184 (221)
230 cd03234 ABCG_White The White s 100.0 2.2E-29 4.8E-34 214.3 15.5 174 77-253 3-188 (226)
231 COG4161 ArtP ABC-type arginine 100.0 7.2E-30 1.6E-34 201.9 11.5 166 78-253 3-186 (242)
232 cd03247 ABCC_cytochrome_bd The 100.0 5.9E-30 1.3E-34 210.2 11.5 142 78-253 1-143 (178)
233 PRK11819 putative ABC transpor 100.0 2.1E-29 4.6E-34 240.3 17.1 166 75-253 4-208 (556)
234 PRK14266 phosphate ABC transpo 100.0 2.4E-29 5.1E-34 217.1 15.8 170 76-253 2-191 (250)
235 TIGR01184 ntrCD nitrate transp 100.0 1.1E-29 2.4E-34 216.8 13.3 151 97-253 1-159 (230)
236 cd03246 ABCC_Protease_Secretio 100.0 1.1E-29 2.5E-34 207.6 12.7 140 78-253 1-141 (173)
237 PRK09580 sufC cysteine desulfu 100.0 3E-29 6.4E-34 216.1 15.9 166 77-252 1-189 (248)
238 cd03228 ABCC_MRP_Like The MRP 100.0 8.6E-30 1.9E-34 208.0 11.9 140 78-253 1-141 (171)
239 TIGR01257 rim_protein retinal- 100.0 1.2E-29 2.7E-34 264.7 15.7 170 76-253 1936-2115(2272)
240 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-29 4.2E-34 209.7 13.9 147 76-253 2-153 (192)
241 PRK13546 teichoic acids export 100.0 3.8E-29 8.2E-34 217.7 15.9 149 94-253 37-188 (264)
242 cd03216 ABC_Carb_Monos_I This 100.0 6.2E-30 1.3E-34 207.4 10.2 127 78-253 1-127 (163)
243 cd03214 ABC_Iron-Siderophores_ 100.0 7.4E-30 1.6E-34 210.1 10.7 139 79-253 1-142 (180)
244 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.3E-29 9.3E-34 209.7 15.5 157 76-253 5-170 (207)
245 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-30 1.1E-34 219.2 9.8 161 78-253 1-183 (234)
246 cd03250 ABCC_MRP_domain1 Domai 100.0 3.3E-29 7.2E-34 209.9 14.7 153 78-249 1-168 (204)
247 PRK14264 phosphate ABC transpo 100.0 6.8E-29 1.5E-33 220.4 17.2 172 74-253 42-245 (305)
248 PRK09700 D-allose transporter 100.0 1.5E-29 3.2E-34 239.2 13.8 167 76-253 264-454 (510)
249 PRK13549 xylose transporter AT 100.0 1.7E-29 3.6E-34 238.6 14.0 172 76-253 258-450 (506)
250 PRK10982 galactose/methyl gala 100.0 1.1E-29 2.5E-34 238.9 12.9 164 80-253 1-179 (491)
251 cd03254 ABCC_Glucan_exporter_l 100.0 2.5E-29 5.4E-34 214.1 13.6 161 77-253 2-184 (229)
252 PRK15064 ABC transporter ATP-b 100.0 3.8E-29 8.2E-34 237.4 16.1 164 77-253 1-200 (530)
253 PRK15064 ABC transporter ATP-b 100.0 3.6E-29 7.8E-34 237.6 15.9 162 76-253 318-483 (530)
254 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.7E-29 1E-33 237.8 15.6 164 76-253 321-488 (552)
255 PRK13545 tagH teichoic acids e 100.0 4.2E-29 9.1E-34 232.4 14.8 166 76-253 20-188 (549)
256 COG4133 CcmA ABC-type transpor 100.0 2.4E-29 5.3E-34 203.1 11.2 167 77-253 2-175 (209)
257 PRK10938 putative molybdenum t 100.0 2E-29 4.4E-34 237.1 12.5 171 75-253 258-446 (490)
258 PRK11819 putative ABC transpor 100.0 6.6E-29 1.4E-33 236.9 16.0 164 76-253 323-490 (556)
259 TIGR01257 rim_protein retinal- 100.0 6.2E-29 1.4E-33 259.5 16.6 171 75-253 926-1106(2272)
260 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-29 2.7E-34 217.3 9.4 162 78-253 1-184 (238)
261 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-28 2.8E-33 234.8 16.8 164 77-253 4-206 (552)
262 COG1129 MglA ABC-type sugar tr 100.0 4.4E-29 9.5E-34 230.1 13.1 170 75-253 6-190 (500)
263 TIGR02633 xylG D-xylose ABC tr 100.0 3.7E-29 7.9E-34 235.9 12.8 171 76-253 256-448 (500)
264 COG4619 ABC-type uncharacteriz 100.0 7.8E-30 1.7E-34 202.6 6.9 163 77-252 3-177 (223)
265 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.2E-29 6.9E-34 209.7 10.1 147 78-253 1-149 (200)
266 TIGR02868 CydC thiol reductant 100.0 8.9E-29 1.9E-33 234.7 14.4 161 77-253 334-515 (529)
267 PRK14257 phosphate ABC transpo 100.0 2.4E-28 5.3E-33 218.7 16.2 172 76-253 79-270 (329)
268 cd03253 ABCC_ATM1_transporter 100.0 1.6E-28 3.4E-33 210.1 14.2 160 78-253 1-182 (236)
269 PRK11147 ABC transporter ATPas 100.0 2.7E-28 5.8E-33 235.9 17.1 166 75-253 1-201 (635)
270 COG2274 SunT ABC-type bacterio 100.0 1.4E-28 3E-33 237.8 14.9 163 76-253 470-654 (709)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-28 2.4E-33 196.1 11.7 114 78-253 1-115 (144)
272 COG1119 ModF ABC-type molybden 100.0 4E-29 8.6E-34 209.8 9.4 172 74-253 28-216 (257)
273 cd03290 ABCC_SUR1_N The SUR do 100.0 2.8E-28 6E-33 206.4 14.6 154 79-249 2-181 (218)
274 KOG0058 Peptide exporter, ABC 100.0 1.4E-28 3.1E-33 231.8 13.9 164 76-253 464-649 (716)
275 PRK11147 ABC transporter ATPas 100.0 3.2E-28 7E-33 235.4 16.4 166 75-253 317-485 (635)
276 PRK03695 vitamin B12-transport 100.0 1.4E-28 3E-33 212.3 12.4 159 79-253 2-178 (248)
277 COG4586 ABC-type uncharacteriz 100.0 3.7E-29 7.9E-34 212.4 8.4 156 93-253 36-201 (325)
278 PRK10636 putative ABC transpor 100.0 3.5E-28 7.7E-33 235.0 16.4 163 77-253 1-194 (638)
279 COG1134 TagH ABC-type polysacc 100.0 1.5E-28 3.3E-33 206.4 12.0 151 92-253 38-192 (249)
280 COG4604 CeuD ABC-type enteroch 100.0 3.7E-29 8E-34 203.5 7.8 168 77-253 1-180 (252)
281 PRK10636 putative ABC transpor 100.0 2E-28 4.3E-33 236.8 14.3 162 75-253 310-475 (638)
282 COG4778 PhnL ABC-type phosphon 100.0 7.9E-29 1.7E-33 197.4 9.4 173 76-254 3-198 (235)
283 PRK10535 macrolide transporter 100.0 5.6E-28 1.2E-32 234.0 17.0 172 76-253 3-189 (648)
284 COG4172 ABC-type uncharacteriz 100.0 3.3E-28 7.2E-33 216.0 14.0 174 75-252 274-470 (534)
285 PRK13409 putative ATPase RIL; 100.0 4.2E-28 9E-33 232.1 15.8 158 75-253 338-498 (590)
286 COG3845 ABC-type uncharacteriz 100.0 2.1E-28 4.6E-33 222.1 12.6 168 75-252 2-184 (501)
287 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.2E-28 1.1E-32 236.0 15.9 161 77-253 451-633 (686)
288 PRK11176 lipid transporter ATP 100.0 5E-28 1.1E-32 232.0 14.8 163 77-253 341-525 (582)
289 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.3E-28 1.4E-32 211.0 14.0 159 78-253 3-183 (275)
290 cd03288 ABCC_SUR2 The SUR doma 100.0 1E-27 2.2E-32 207.9 15.0 164 74-253 16-201 (257)
291 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.5E-28 1.8E-32 207.2 14.2 143 97-253 10-160 (246)
292 PRK10982 galactose/methyl gala 100.0 4.7E-28 1E-32 228.0 13.5 167 76-253 249-436 (491)
293 COG4167 SapF ABC-type antimicr 100.0 2.7E-28 5.9E-33 196.5 10.0 175 75-252 2-193 (267)
294 PLN03211 ABC transporter G-25; 100.0 5.2E-28 1.1E-32 234.0 13.6 164 79-253 70-251 (659)
295 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.7E-28 1.7E-32 235.6 14.8 163 76-253 476-660 (710)
296 PRK10762 D-ribose transporter 100.0 6.8E-28 1.5E-32 227.4 13.9 164 76-253 256-440 (501)
297 COG4107 PhnK ABC-type phosphon 100.0 9.3E-28 2E-32 192.1 12.2 170 75-252 4-195 (258)
298 PRK11288 araG L-arabinose tran 100.0 7E-28 1.5E-32 227.3 13.3 166 76-253 256-441 (501)
299 TIGR02857 CydD thiol reductant 100.0 1.5E-27 3.4E-32 226.3 15.2 162 77-253 320-503 (529)
300 KOG0055 Multidrug/pheromone ex 99.9 2.2E-28 4.8E-33 241.9 9.3 164 76-253 349-534 (1228)
301 PRK15177 Vi polysaccharide exp 99.9 7.8E-28 1.7E-32 203.2 11.4 143 96-252 2-148 (213)
302 PRK11160 cysteine/glutathione 99.9 9.1E-28 2E-32 229.9 12.9 163 76-253 337-520 (574)
303 TIGR03771 anch_rpt_ABC anchore 99.9 2.2E-27 4.8E-32 201.7 13.3 148 102-253 1-158 (223)
304 PRK11174 cysteine/glutathione 99.9 2.1E-27 4.7E-32 227.9 14.9 160 77-253 349-530 (588)
305 TIGR01193 bacteriocin_ABC ABC- 99.9 2E-27 4.3E-32 232.7 14.6 161 77-252 473-655 (708)
306 PRK15439 autoinducer 2 ABC tra 99.9 2.1E-27 4.6E-32 224.5 14.2 164 76-253 267-448 (510)
307 TIGR03375 type_I_sec_LssB type 99.9 2.2E-27 4.8E-32 231.8 14.4 163 76-253 462-646 (694)
308 COG4559 ABC-type hemin transpo 99.9 1.7E-27 3.6E-32 195.8 11.3 166 77-252 1-185 (259)
309 cd03222 ABC_RNaseL_inhibitor T 99.9 1.6E-27 3.4E-32 195.6 11.2 112 81-253 4-116 (177)
310 TIGR02203 MsbA_lipidA lipid A 99.9 3.2E-27 6.8E-32 225.9 15.0 163 77-253 330-514 (571)
311 PRK10790 putative multidrug tr 99.9 3.1E-27 6.8E-32 227.0 14.9 159 77-252 340-520 (592)
312 TIGR00954 3a01203 Peroxysomal 99.9 3.6E-27 7.9E-32 228.7 14.5 165 76-253 450-627 (659)
313 TIGR00958 3a01208 Conjugate Tr 99.9 4.7E-27 1E-31 230.0 15.2 160 76-249 477-658 (711)
314 PLN03073 ABC transporter F fam 99.9 8.8E-27 1.9E-31 226.9 16.9 161 76-252 507-671 (718)
315 TIGR01842 type_I_sec_PrtD type 99.9 5.8E-27 1.3E-31 223.1 15.3 161 77-252 316-498 (544)
316 COG4172 ABC-type uncharacteriz 99.9 6.9E-27 1.5E-31 207.7 14.6 175 75-253 4-202 (534)
317 PRK10522 multidrug transporter 99.9 4.1E-27 8.9E-32 224.2 13.6 156 77-252 322-493 (547)
318 TIGR01192 chvA glucan exporter 99.9 9.7E-27 2.1E-31 223.3 15.6 162 76-253 333-516 (585)
319 PRK13657 cyclic beta-1,2-gluca 99.9 7.9E-27 1.7E-31 224.0 14.9 160 77-252 334-515 (588)
320 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.9E-26 6.4E-31 201.2 16.5 151 75-250 37-201 (282)
321 PRK10789 putative multidrug tr 99.9 1.5E-26 3.3E-31 221.3 14.8 162 77-253 313-496 (569)
322 TIGR01846 type_I_sec_HlyB type 99.9 1.2E-26 2.6E-31 226.7 14.2 163 76-253 454-638 (694)
323 KOG0057 Mitochondrial Fe/S clu 99.9 1E-26 2.2E-31 213.1 12.4 159 77-252 351-531 (591)
324 TIGR02204 MsbA_rel ABC transpo 99.9 2.1E-26 4.5E-31 220.6 14.7 163 76-252 336-520 (576)
325 COG0488 Uup ATPase components 99.9 4E-26 8.8E-31 214.4 15.7 165 75-252 1-197 (530)
326 COG4674 Uncharacterized ABC-ty 99.9 5.6E-27 1.2E-31 190.5 8.5 167 76-252 4-191 (249)
327 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.4E-26 5.2E-31 199.1 13.1 157 81-253 4-184 (255)
328 COG4988 CydD ABC-type transpor 99.9 3.8E-26 8.3E-31 211.5 14.9 159 78-252 321-500 (559)
329 TIGR01194 cyc_pep_trnsptr cycl 99.9 2.2E-26 4.9E-31 219.5 13.6 159 76-250 336-512 (555)
330 TIGR00956 3a01205 Pleiotropic 99.9 3.3E-26 7.2E-31 236.5 15.5 175 76-253 758-947 (1394)
331 COG1132 MdlB ABC-type multidru 99.9 5.1E-27 1.1E-31 224.5 8.8 161 76-252 327-509 (567)
332 COG4987 CydC ABC-type transpor 99.9 1.2E-26 2.7E-31 212.3 10.1 163 77-253 336-519 (573)
333 COG4148 ModC ABC-type molybdat 99.9 9.8E-27 2.1E-31 198.2 8.5 154 82-253 5-173 (352)
334 PTZ00265 multidrug resistance 99.9 6.6E-26 1.4E-30 234.8 14.6 163 77-253 1165-1403(1466)
335 PTZ00265 multidrug resistance 99.9 5.8E-26 1.3E-30 235.2 13.9 169 77-253 382-624 (1466)
336 cd00267 ABC_ATPase ABC (ATP-bi 99.9 4.6E-26 9.9E-31 183.3 10.2 123 80-253 2-125 (157)
337 PRK13409 putative ATPase RIL; 99.9 6E-26 1.3E-30 217.3 12.3 156 82-253 78-257 (590)
338 PLN03073 ABC transporter F fam 99.9 1.2E-25 2.5E-30 219.1 14.5 161 74-253 174-389 (718)
339 cd03238 ABC_UvrA The excision 99.9 1.3E-25 2.9E-30 184.0 12.1 120 96-253 10-134 (176)
340 COG4136 ABC-type uncharacteriz 99.9 6.1E-26 1.3E-30 177.6 9.4 167 77-251 2-177 (213)
341 KOG0055 Multidrug/pheromone ex 99.9 1.3E-25 2.9E-30 222.3 13.7 163 77-253 987-1171(1228)
342 COG0488 Uup ATPase components 99.9 2.8E-25 6.1E-30 208.7 14.5 162 75-252 319-483 (530)
343 KOG0059 Lipid exporter ABCA1 a 99.9 1.1E-25 2.4E-30 224.1 12.0 170 75-253 562-743 (885)
344 TIGR01187 potA spermidine/putr 99.9 1.8E-25 3.8E-30 200.2 11.7 136 112-253 1-145 (325)
345 COG0396 sufC Cysteine desulfur 99.9 9.6E-25 2.1E-29 181.6 14.1 173 75-252 1-188 (251)
346 PLN03232 ABC transporter C fam 99.9 5.1E-25 1.1E-29 229.4 15.4 161 77-253 1234-1416(1495)
347 TIGR00955 3a01204 The Eye Pigm 99.9 4E-25 8.6E-30 213.2 12.6 151 96-253 40-211 (617)
348 PLN03130 ABC transporter C fam 99.9 8.7E-25 1.9E-29 228.3 15.9 161 77-253 1237-1419(1622)
349 PTZ00243 ABC transporter; Prov 99.9 9.6E-25 2.1E-29 227.6 15.5 161 77-253 1308-1491(1560)
350 PF00005 ABC_tran: ABC transpo 99.9 6.3E-26 1.4E-30 177.9 4.9 122 97-237 1-137 (137)
351 COG1101 PhnK ABC-type uncharac 99.9 3E-25 6.5E-30 182.9 8.4 172 77-252 1-192 (263)
352 TIGR00957 MRP_assoc_pro multi 99.9 1.2E-24 2.7E-29 226.8 15.0 161 77-253 1284-1466(1522)
353 PLN03140 ABC transporter G fam 99.9 1.7E-24 3.6E-29 223.8 15.8 172 77-253 867-1064(1470)
354 TIGR01271 CFTR_protein cystic 99.9 3.5E-24 7.5E-29 223.0 14.5 160 77-253 1217-1398(1490)
355 TIGR00957 MRP_assoc_pro multi 99.9 1.2E-23 2.6E-28 219.5 15.5 154 77-251 636-803 (1522)
356 KOG0061 Transporter, ABC super 99.9 1.7E-23 3.7E-28 201.0 15.0 173 77-253 25-215 (613)
357 TIGR00956 3a01205 Pleiotropic 99.9 8.5E-24 1.8E-28 218.7 13.8 155 96-253 76-254 (1394)
358 cd03270 ABC_UvrA_I The excisio 99.9 2.4E-23 5.2E-28 177.4 14.1 154 95-253 9-184 (226)
359 COG4618 ArpD ABC-type protease 99.9 9.1E-24 2E-28 192.4 11.2 162 76-252 333-516 (580)
360 PLN03232 ABC transporter C fam 99.9 2.1E-23 4.5E-28 217.4 14.9 155 77-249 614-781 (1495)
361 PLN03140 ABC transporter G fam 99.9 1.7E-23 3.6E-28 216.5 13.9 153 95-253 179-381 (1470)
362 PLN03130 ABC transporter C fam 99.9 3E-23 6.5E-28 216.9 15.8 155 76-249 613-781 (1622)
363 KOG0056 Heavy metal exporter H 99.9 1.3E-23 2.8E-28 190.5 7.8 161 76-252 536-718 (790)
364 TIGR01271 CFTR_protein cystic 99.9 7E-23 1.5E-27 213.3 11.7 136 96-250 441-590 (1490)
365 KOG0927 Predicted transporter 99.9 2.4E-22 5.1E-27 184.1 10.9 164 75-253 387-554 (614)
366 PTZ00243 ABC transporter; Prov 99.9 1.2E-21 2.7E-26 204.5 14.1 136 96-249 675-823 (1560)
367 cd03278 ABC_SMC_barmotin Barmo 99.9 1.2E-21 2.6E-26 163.6 11.3 130 98-253 14-162 (197)
368 COG4178 ABC-type uncharacteriz 99.8 8.6E-21 1.9E-25 178.5 13.3 157 76-253 391-560 (604)
369 cd03272 ABC_SMC3_euk Eukaryoti 99.8 3.3E-21 7.1E-26 165.5 7.9 51 203-253 153-207 (243)
370 COG5265 ATM1 ABC-type transpor 99.8 2.2E-20 4.7E-25 167.1 11.4 161 77-253 262-444 (497)
371 KOG0062 ATPase component of AB 99.8 1.5E-20 3.3E-25 171.5 10.5 160 76-252 79-242 (582)
372 KOG0054 Multidrug resistance-a 99.8 2.1E-20 4.6E-25 189.0 11.9 162 76-253 1137-1320(1381)
373 COG4615 PvdE ABC-type sideroph 99.8 6.1E-20 1.3E-24 163.2 12.9 163 75-251 320-491 (546)
374 KOG0927 Predicted transporter 99.8 1.7E-20 3.6E-25 172.1 8.6 159 75-252 73-265 (614)
375 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2.8E-21 6.1E-26 163.1 2.7 156 77-253 5-176 (212)
376 cd03271 ABC_UvrA_II The excisi 99.8 2.6E-19 5.7E-24 155.2 13.6 65 189-253 147-217 (261)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.8 8.2E-20 1.8E-24 157.9 10.5 144 107-253 25-215 (251)
378 KOG0066 eIF2-interacting prote 99.8 1.1E-19 2.5E-24 163.3 10.8 162 75-253 584-749 (807)
379 COG1245 Predicted ATPase, RNas 99.8 1.4E-19 3.1E-24 163.2 11.2 156 76-252 341-499 (591)
380 KOG0054 Multidrug resistance-a 99.8 5.3E-19 1.1E-23 179.0 13.3 155 75-249 516-684 (1381)
381 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.6E-19 5.7E-24 151.1 9.1 151 77-253 5-178 (213)
382 KOG0065 Pleiotropic drug resis 99.8 1.4E-18 3.1E-23 173.0 11.5 172 77-252 787-974 (1391)
383 cd03240 ABC_Rad50 The catalyti 99.8 9.9E-19 2.2E-23 146.7 8.8 131 101-253 17-167 (204)
384 KOG0060 Long-chain acyl-CoA tr 99.8 4.1E-18 8.8E-23 157.6 13.0 166 76-253 432-615 (659)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.8 8.8E-18 1.9E-22 140.4 13.3 133 98-253 13-158 (198)
386 COG4170 SapD ABC-type antimicr 99.8 2.4E-18 5.3E-23 141.9 9.5 172 75-253 1-203 (330)
387 KOG2355 Predicted ABC-type tra 99.7 6.3E-18 1.4E-22 138.9 10.1 170 76-253 12-192 (291)
388 COG4138 BtuD ABC-type cobalami 99.7 2.2E-18 4.8E-23 138.4 5.1 156 77-252 3-176 (248)
389 COG1129 MglA ABC-type sugar tr 99.7 2.5E-17 5.5E-22 152.4 12.3 167 75-253 261-446 (500)
390 cd03275 ABC_SMC1_euk Eukaryoti 99.7 8.9E-18 1.9E-22 144.9 8.1 48 206-253 153-204 (247)
391 PRK00349 uvrA excinuclease ABC 99.7 1.4E-16 3E-21 158.6 14.6 64 190-253 809-878 (943)
392 PRK00635 excinuclease ABC subu 99.7 2.5E-16 5.4E-21 163.4 14.3 61 193-253 791-857 (1809)
393 TIGR00630 uvra excinuclease AB 99.7 5.7E-16 1.2E-20 154.0 14.5 64 190-253 807-876 (924)
394 KOG2702 Predicted panthothenat 99.6 2.4E-16 5.1E-21 131.4 6.3 145 104-254 116-262 (323)
395 COG1245 Predicted ATPase, RNas 99.6 3.7E-16 8E-21 141.4 7.0 160 82-253 79-258 (591)
396 cd03280 ABC_MutS2 MutS2 homolo 99.6 4.2E-16 9.1E-21 130.3 5.9 109 98-249 18-131 (200)
397 KOG0064 Peroxisomal long-chain 99.6 9E-16 2E-20 140.8 7.6 162 77-252 481-656 (728)
398 KOG0062 ATPase component of AB 99.6 3.2E-15 6.9E-20 136.9 10.2 163 75-252 360-526 (582)
399 COG2401 ABC-type ATPase fused 99.6 7E-15 1.5E-19 131.9 10.2 141 96-251 398-550 (593)
400 cd02025 PanK Pantothenate kina 99.6 6.9E-15 1.5E-19 124.8 7.6 129 109-253 1-131 (220)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.6 3.1E-14 6.8E-19 120.2 11.2 50 203-252 121-174 (213)
402 COG3845 ABC-type uncharacteriz 99.6 3.8E-14 8.2E-19 129.6 12.4 171 75-252 255-447 (501)
403 cd03227 ABC_Class2 ABC-type Cl 99.5 1.4E-14 3.1E-19 117.2 8.2 111 98-253 12-126 (162)
404 cd03239 ABC_SMC_head The struc 99.5 8.9E-15 1.9E-19 120.2 7.1 45 209-253 95-143 (178)
405 TIGR00554 panK_bact pantothena 99.5 1.6E-14 3.4E-19 126.9 6.8 133 105-253 60-199 (290)
406 cd03283 ABC_MutS-like MutS-lik 99.5 1.9E-14 4.2E-19 120.3 6.4 34 96-131 16-49 (199)
407 KOG0066 eIF2-interacting prote 99.5 6.8E-14 1.5E-18 126.4 9.3 150 77-243 264-447 (807)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.5 2.7E-14 5.9E-19 121.3 5.6 109 96-246 19-132 (222)
409 cd03243 ABC_MutS_homologs The 99.5 2.1E-14 4.6E-19 120.2 4.2 110 98-249 20-131 (202)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.5 5.4E-14 1.2E-18 118.0 5.8 109 96-246 18-128 (204)
411 KOG0065 Pleiotropic drug resis 99.5 2.6E-13 5.6E-18 136.0 10.8 156 94-252 128-304 (1391)
412 cd03241 ABC_RecN RecN ATPase i 99.5 2.7E-13 5.9E-18 118.8 9.4 46 208-253 170-219 (276)
413 COG1072 CoaA Panthothenate kin 99.4 1.1E-13 2.3E-18 118.8 6.0 133 105-253 80-213 (283)
414 cd02023 UMPK Uridine monophosp 99.4 8.5E-13 1.8E-17 109.9 8.3 111 109-241 1-113 (198)
415 PTZ00301 uridine kinase; Provi 99.4 9.5E-13 2.1E-17 110.8 8.5 126 108-253 4-129 (210)
416 COG0572 Udk Uridine kinase [Nu 99.4 1.3E-12 2.8E-17 109.3 8.9 124 106-253 7-130 (218)
417 KOG0063 RNAse L inhibitor, ABC 99.4 1.5E-12 3.2E-17 117.5 8.2 139 98-251 353-499 (592)
418 TIGR00235 udk uridine kinase. 99.4 1.8E-12 3.9E-17 108.9 7.4 117 105-241 4-120 (207)
419 PRK05439 pantothenate kinase; 99.3 1E-12 2.3E-17 116.3 5.7 132 106-253 85-219 (311)
420 PRK09270 nucleoside triphospha 99.3 3.4E-12 7.4E-17 108.9 7.2 131 104-252 30-162 (229)
421 PRK05480 uridine/cytidine kina 99.3 1.4E-11 3.1E-16 103.5 10.1 117 105-241 4-120 (209)
422 PRK00635 excinuclease ABC subu 99.3 4E-11 8.6E-16 125.3 13.9 66 188-253 1676-1747(1809)
423 PLN02796 D-glycerate 3-kinase 99.3 6.4E-12 1.4E-16 112.2 6.2 133 96-242 81-234 (347)
424 cd03242 ABC_RecF RecF is a rec 99.3 3.7E-11 7.9E-16 105.0 10.9 47 206-252 181-236 (270)
425 COG0178 UvrA Excinuclease ATPa 99.3 7.8E-11 1.7E-15 113.4 13.5 63 190-252 801-869 (935)
426 TIGR01069 mutS2 MutS2 family p 99.2 1.3E-11 2.9E-16 121.6 7.0 114 99-251 313-428 (771)
427 smart00534 MUTSac ATPase domai 99.2 5E-12 1.1E-16 104.4 1.9 45 203-248 56-100 (185)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.2 1.5E-10 3.3E-15 97.7 10.2 33 212-244 94-126 (213)
429 cd03284 ABC_MutS1 MutS1 homolo 99.2 3.6E-11 7.9E-16 101.8 6.0 35 96-131 20-54 (216)
430 PF00485 PRK: Phosphoribulokin 99.2 4.2E-12 9.1E-17 105.6 -0.4 127 109-253 1-129 (194)
431 cd02024 NRK1 Nicotinamide ribo 99.1 2.1E-10 4.5E-15 94.9 8.3 120 109-253 1-133 (187)
432 PTZ00132 GTP-binding nuclear p 99.1 1.5E-10 3.2E-15 97.5 7.4 47 207-253 149-202 (215)
433 PLN02318 phosphoribulokinase/u 99.1 1E-10 2.2E-15 110.5 6.9 115 107-253 65-179 (656)
434 PF02463 SMC_N: RecF/RecN/SMC 99.1 1.4E-10 3.1E-15 97.9 7.0 61 189-253 121-185 (220)
435 PLN03046 D-glycerate 3-kinase; 99.1 3.3E-10 7.2E-15 103.2 9.1 118 106-242 211-346 (460)
436 cd02026 PRK Phosphoribulokinas 99.1 6.9E-10 1.5E-14 97.2 9.1 106 109-241 1-110 (273)
437 PRK08533 flagellar accessory p 99.0 2.1E-09 4.7E-14 91.8 10.8 118 104-252 21-147 (230)
438 PLN02348 phosphoribulokinase 99.0 5.6E-10 1.2E-14 101.2 7.1 122 105-241 47-177 (395)
439 cd02028 UMPK_like Uridine mono 99.0 4.7E-10 1E-14 92.3 5.7 112 109-240 1-112 (179)
440 PRK00409 recombination and DNA 99.0 3.9E-10 8.5E-15 111.5 5.1 110 100-248 319-429 (782)
441 PRK06793 fliI flagellum-specif 99.0 2.2E-09 4.7E-14 99.0 9.5 135 76-252 129-270 (432)
442 cd03287 ABC_MSH3_euk MutS3 hom 99.0 8.8E-10 1.9E-14 93.6 6.2 36 96-131 20-55 (222)
443 cd00820 PEPCK_HprK Phosphoenol 99.0 6.5E-10 1.4E-14 83.4 4.2 33 96-128 4-36 (107)
444 KOG0063 RNAse L inhibitor, ABC 99.0 5E-10 1.1E-14 101.3 4.0 142 105-251 98-256 (592)
445 PRK07429 phosphoribulokinase; 98.9 4.9E-09 1.1E-13 93.9 9.6 109 106-241 7-119 (327)
446 TIGR02858 spore_III_AA stage I 98.9 5.2E-09 1.1E-13 91.3 9.5 30 108-140 112-141 (270)
447 cd02029 PRK_like Phosphoribulo 98.9 1.1E-08 2.4E-13 88.5 9.9 126 109-253 1-143 (277)
448 TIGR03238 dnd_assoc_3 dnd syst 98.9 1.3E-09 2.9E-14 100.7 4.2 39 96-139 21-59 (504)
449 PRK06995 flhF flagellar biosyn 98.9 6.9E-09 1.5E-13 97.0 8.8 129 96-241 245-381 (484)
450 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.8E-09 1E-13 88.9 5.8 36 96-131 19-54 (218)
451 TIGR00630 uvra excinuclease AB 98.8 1.1E-08 2.4E-13 102.5 7.1 61 193-253 469-534 (924)
452 PRK00349 uvrA excinuclease ABC 98.8 1.1E-08 2.4E-13 102.7 6.4 61 193-253 471-536 (943)
453 PRK15453 phosphoribulokinase; 98.7 1.4E-07 3E-12 82.4 10.7 120 106-239 4-136 (290)
454 COG4240 Predicted kinase [Gene 98.7 8.1E-08 1.8E-12 80.6 8.1 125 104-241 47-177 (300)
455 COG3910 Predicted ATPase [Gene 98.7 1.8E-07 4E-12 76.5 9.7 138 96-252 25-172 (233)
456 cd01128 rho_factor Transcripti 98.6 1.7E-07 3.7E-12 81.0 9.7 34 99-132 8-41 (249)
457 smart00382 AAA ATPases associa 98.6 2.2E-07 4.7E-12 70.9 8.8 99 107-248 2-100 (148)
458 PRK13695 putative NTPase; Prov 98.6 2.4E-08 5.2E-13 81.5 2.7 47 206-252 76-124 (174)
459 cd01124 KaiC KaiC is a circadi 98.6 5E-07 1.1E-11 73.9 10.4 50 203-252 66-124 (187)
460 cd01130 VirB11-like_ATPase Typ 98.5 2.1E-07 4.5E-12 76.9 7.0 40 98-140 16-55 (186)
461 PRK07667 uridine kinase; Provi 98.5 5.1E-07 1.1E-11 75.0 8.4 107 106-237 16-130 (193)
462 PRK06067 flagellar accessory p 98.5 4.1E-07 8.9E-12 77.7 7.9 118 103-249 21-143 (234)
463 PF13304 AAA_21: AAA domain; P 98.5 1.5E-07 3.3E-12 79.1 5.1 48 206-253 234-284 (303)
464 TIGR02788 VirB11 P-type DNA tr 98.5 3.3E-07 7.1E-12 81.7 6.9 33 100-132 137-169 (308)
465 cd01120 RecA-like_NTPases RecA 98.5 6.7E-07 1.5E-11 70.8 7.8 24 109-132 1-24 (165)
466 PF13555 AAA_29: P-loop contai 98.5 2.7E-07 5.9E-12 62.2 4.6 34 98-131 13-47 (62)
467 PRK14721 flhF flagellar biosyn 98.5 7E-07 1.5E-11 82.4 8.9 95 104-217 188-284 (420)
468 TIGR03015 pepcterm_ATPase puta 98.4 2.5E-06 5.5E-11 73.9 11.7 37 96-132 31-68 (269)
469 PRK06002 fliI flagellum-specif 98.4 3.4E-07 7.4E-12 84.8 5.7 60 74-140 136-195 (450)
470 PRK14722 flhF flagellar biosyn 98.4 2E-06 4.2E-11 78.3 10.3 71 96-183 126-196 (374)
471 PRK06696 uridine kinase; Valid 98.4 1.7E-06 3.6E-11 73.5 8.2 109 106-238 21-139 (223)
472 cd01131 PilT Pilus retraction 98.3 1.8E-06 3.9E-11 72.0 7.9 24 109-132 3-26 (198)
473 TIGR02903 spore_lon_C ATP-depe 98.3 4.1E-06 8.9E-11 81.3 10.9 116 106-253 174-291 (615)
474 TIGR00767 rho transcription te 98.3 1.1E-06 2.4E-11 80.2 5.8 54 76-132 129-193 (415)
475 PRK07196 fliI flagellum-specif 98.2 8E-07 1.7E-11 82.2 3.7 37 95-132 144-180 (434)
476 PRK09825 idnK D-gluconate kina 98.2 9.8E-07 2.1E-11 72.3 3.8 27 106-132 2-28 (176)
477 PRK14723 flhF flagellar biosyn 98.2 3.4E-06 7.3E-11 82.8 8.1 87 96-199 174-262 (767)
478 PRK09862 putative ATP-dependen 98.2 9.6E-07 2.1E-11 83.3 4.2 54 80-140 187-240 (506)
479 PHA02562 46 endonuclease subun 98.2 1.1E-06 2.5E-11 84.2 4.7 49 205-253 465-524 (562)
480 PRK10416 signal recognition pa 98.2 1.1E-05 2.4E-10 72.1 10.5 28 105-132 112-139 (318)
481 PRK10078 ribose 1,5-bisphospho 98.2 1E-06 2.2E-11 72.7 3.3 26 107-132 2-27 (186)
482 PRK08233 hypothetical protein; 98.2 1.1E-05 2.3E-10 65.7 9.0 26 106-131 2-27 (182)
483 PRK06731 flhF flagellar biosyn 98.2 2.7E-05 5.9E-10 68.0 11.9 36 97-132 58-100 (270)
484 cd01125 repA Hexameric Replica 98.2 7.2E-06 1.6E-10 70.3 8.0 25 107-131 1-25 (239)
485 PRK07594 type III secretion sy 98.1 2.2E-06 4.8E-11 79.3 4.7 58 76-140 128-185 (433)
486 TIGR01420 pilT_fam pilus retra 98.1 1.5E-05 3.2E-10 72.2 9.7 29 104-132 119-147 (343)
487 TIGR00618 sbcc exonuclease Sbc 98.1 2.6E-06 5.7E-11 87.4 5.3 52 202-253 944-1005(1042)
488 cd01136 ATPase_flagellum-secre 98.1 3.2E-06 6.9E-11 75.6 5.1 51 83-140 49-99 (326)
489 PRK10246 exonuclease subunit S 98.1 2.7E-06 5.8E-11 87.3 5.0 51 202-252 943-1001(1047)
490 TIGR00634 recN DNA repair prot 98.1 3.6E-06 7.7E-11 81.0 5.3 46 208-253 440-489 (563)
491 PRK00300 gmk guanylate kinase; 98.1 2.7E-06 5.8E-11 71.0 3.8 27 105-131 3-29 (205)
492 cd00009 AAA The AAA+ (ATPases 98.1 1.6E-05 3.5E-10 61.0 7.9 26 106-131 18-43 (151)
493 PRK10869 recombination and rep 98.1 4.1E-06 8.9E-11 80.3 5.0 46 208-253 430-479 (553)
494 PRK07721 fliI flagellum-specif 98.1 3.6E-06 7.8E-11 78.3 4.2 41 96-140 148-188 (438)
495 PRK08149 ATP synthase SpaL; Va 98.0 4.8E-06 1E-10 77.0 4.8 36 96-132 141-176 (428)
496 TIGR02322 phosphon_PhnN phosph 98.0 4.5E-06 9.7E-11 68.1 3.7 26 107-132 1-26 (179)
497 KOG2878 Predicted kinase [Gene 98.0 8.5E-06 1.9E-10 67.4 5.2 119 108-242 32-167 (282)
498 TIGR00606 rad50 rad50. This fa 98.0 5.9E-06 1.3E-10 86.7 5.4 19 109-127 30-48 (1311)
499 PRK05399 DNA mismatch repair p 98.0 8.1E-06 1.8E-10 82.0 6.0 33 98-131 599-631 (854)
500 TIGR03263 guanyl_kin guanylate 98.0 4.1E-06 8.9E-11 68.3 3.2 25 107-131 1-25 (180)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=271.47 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=142.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|+++||+|.||+.+ +|++||++|++||+++|+||||||||||||+|++|.. |++|+ .++|+..
T Consensus 1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL 73 (240)
T ss_pred CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence 3799999999999865 6799999999999999999999999999999999998 99999 6777422
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
+...|- + +..|.++.+ +|+.+|+..... ..+.+.+...+...++|+.+++. .+.|+.+|||||+|||+||||
T Consensus 74 ~~R~~vGm-V-FQ~fnLFPH-lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 74 KLRRKVGM-V-FQQFNLFPH-LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHhcCe-e-ccccccccc-chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 234564 3 334555544 799999987654 35667777778889999999987 678999999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|+.+|+++++||||++|||+...++.+.+.
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~ 180 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMK 180 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999988875
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=274.51 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=145.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV 151 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~ 151 (254)
.+++++++++.|+... +|+|+||+|.+||+++|+||||||||||||+|+|+.+ |++|+ .++|+.. .++.
T Consensus 2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI 74 (248)
T ss_pred ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence 5789999999999843 7799999999999999999999999999999999998 99999 6777542 4567
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
+. +.|+...++. +|+.+|+.+.....+...........++++.+++. .+.++.+|||||||||+||||++.+|+|
T Consensus 75 ~~-vFQ~~~LlPW--~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 75 GY-VFQEDALLPW--LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred EE-EeccCcccch--hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 76 5666554443 79999999988877766666667889999999986 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhh
Q 025366 230 VIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 230 lIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|+|||||+.||+..+..+.+.+.
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~ 174 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELL 174 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHH
Confidence 99999999999999998888764
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-38 Score=265.72 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=148.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
||+++||+|.|++.. |++++||+|++||+++++|||||||||+||||.+++. |++|+ .++|+..
T Consensus 1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL 73 (309)
T ss_pred CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence 589999999999755 7799999999999999999999999999999999998 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~ia~al 223 (254)
+..+|+++.+.|.+.. +|+.+|+.......++.+.....+..++++.+++. .++|+.+|||||+|||.+||||
T Consensus 74 Rr~IGYviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 74 RRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHhhhhhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 4567987777775443 79999999999888887777778899999999986 5789999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|+||++||||++|||..+.++.+.+.+
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 999999999999999999999999887753
No 4
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-38 Score=261.37 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=147.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
|++++++||++.|+.......++++|||++.+||++||+|+||||||||+|+|+|+.+ |+.|+ .++|+...
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 4689999999999886544457799999999999999999999999999999999998 99999 78884322
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~a 222 (254)
.....+|++|.+.-.++..++.+.+.......|+... ..+..++++.+++. .++++.+|||||+||++||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 2335678899887777777887777776666555432 34488999999997 578999999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|++||+||||++||...+.+|++++.+
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~ 186 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLE 186 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999854
No 5
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-37 Score=251.53 Aligned_cols=168 Identities=17% Similarity=0.116 Sum_probs=148.0
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC---------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------- 146 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~--------- 146 (254)
||+++||+|.|++.+ .||+||||+|++||++-|+||||||||||+|+|++..+ |++|+ .+.+..
T Consensus 1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence 588999999998852 37899999999999999999999999999999999998 99999 565522
Q ss_pred --CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 147 --~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
.+..+|. |.+|-..+.. .+++||..+..+..|.+......++.++|+.+++. ....+++||||++||++||||
T Consensus 75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence 1345675 6777666554 79999999999999998777788999999999987 456789999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||.||||..|||....+|+++|++
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-37 Score=275.11 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=146.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CC
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PP 149 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~ 149 (254)
|.+|+++||+|.||+.. +++++||+|+.||+++|+||||||||||||+|+|+.. |++|+ .++|... +.
T Consensus 1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999843 6699999999999999999999999999999999998 99999 6777432 22
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
+.+..+.++.|.++++ +++.+|+.+..+..+.+++....++.++.+.|++. .+.++.+|||||+|||++||||+.+|
T Consensus 74 ~R~iamVFQ~yALyPh-mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 74 KRGIAMVFQNYALYPH-MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred HCCEEEEeCCccccCC-CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 2222233445555544 89999999999999998888889999999999987 68889999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+++++|||++.||+..+..++..|.
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHH
Confidence 9999999999999999988887764
No 7
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.8e-37 Score=269.86 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=145.1
Q ss_pred cceEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
+.+++++||+|.|+ +.. +|+||||++++|+++||+||||||||||+|+|+|++. |++|+ .+.|...
T Consensus 2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 56789999999999 544 7799999999999999999999999999999999998 99999 5666322
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al 223 (254)
+...|+ +.++...+ +.+|+.|++.+....++.+...+...+.++++.+++.. +..+..||+|||||+.+|.||
T Consensus 75 ~~~~~igy-~~~~~~~~--~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 75 KVRRRIGY-VPQEPSLY--PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HHHhheEE-EccCCCCC--ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence 234676 55554432 33899999999988888755555678899999999986 677899999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|+++||||||+|||+..+.+++++|..
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999853
No 8
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.8e-37 Score=257.16 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=141.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
++++++|+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+ |++|+ .+.|...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 46789999999765444668899999999999999999999999999999999998 99999 6776211
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia 220 (254)
....|+ |.|+...++. +++.||+.......+............+++.+++.. +.++.+|||||+|||+||
T Consensus 78 ~~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 78 AKLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 345676 6666555544 899999988776666544334566778888888862 366889999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+.+|++|+.||||..||..+.+++.++|.+
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~ 187 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRE 187 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999854
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-37 Score=260.02 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=137.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----C
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----P 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~ 148 (254)
+++|+++|+++.|++.. +|+||||++++|++++|+||||||||||+|+|+|+++ |++|+ .+.+... .
T Consensus 2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR 74 (254)
T ss_pred CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence 67899999999999742 6799999999999999999999999999999999998 99999 5555321 1
Q ss_pred CCeEEEeeCCC-CCCCCcCCChhhcHHHHHH-HcCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 149 PDVATVLPMDG-FHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 149 ~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
..+|+ ++|.. ++... .+++.+-....+. ..++ +...+.+.+.++|+.+++. .+..+.+|||||+|||.+||
T Consensus 75 ~~IgY-VPQ~~~~d~~f-P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 75 LRIGY-VPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred CeEEE-cCcccccCCCC-CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 34666 66643 22222 2677766544321 1222 3344567889999999987 67889999999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+.+|++|+|||||+++|+..+..+.++|++
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-37 Score=263.94 Aligned_cols=171 Identities=16% Similarity=0.138 Sum_probs=147.7
Q ss_pred eEEEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
||++++|+|.|.. ....+.|++||||+|++|+|+||+|.||||||||+|+|.++.+ |++|+ .++|+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence 5899999999987 3334668999999999999999999999999999999999998 99999 6777322
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
+..+|- |++.-..+.. .|+.+|+.+..+..|+++.....++.++++.+++. .+.|+.+|||||||||+|||
T Consensus 78 Lr~~R~~IGM-IFQhFnLLss--rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 78 LRQLRQKIGM-IFQHFNLLSS--RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHHhhccE-Eecccccccc--chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 345564 5444333332 58999999999999988888888999999999987 57899999999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+.+|+||+.||+|+.|||...+.|.+++..
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~ 186 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKD 186 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999998864
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-37 Score=272.06 Aligned_cols=168 Identities=15% Similarity=0.186 Sum_probs=141.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
++.++++||+|.|++.. +++|+||+|++||+++|+||||||||||||+|+|+.. |++|+ .++|+..
T Consensus 3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE 75 (352)
T ss_pred CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 56899999999999754 7899999999999999999999999999999999997 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
+..+|. |.+ +|.++.+ +++.+|+.|..+..+. .......++.++++.+++. .++++.+|||||+|||++||||+
T Consensus 76 kR~ig~-VFQ-~YALFPH-ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 76 KRPIGM-VFQ-SYALFPH-MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred hcccce-eec-CcccCCC-CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 234454 444 4555544 8999999998884443 3344567889999988887 67899999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.+|+||+||||++.||...+.+++.-+.
T Consensus 153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred cCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 9999999999999999999888887664
No 12
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-36 Score=252.77 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=142.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
.++|++++|++.||++. +++|+||+|++||+++|+||||||||||+|+|.|+++ |++|+ .++|...
T Consensus 6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence 46899999999999954 5699999999999999999999999999999999998 99999 6676432
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (254)
....|. +.|.|-.+.. +++.||+.+..+.+. +++....+.+..-++.+++. .+.++.+|||||++|++
T Consensus 79 ~~~~ir~r~Gv-lFQ~gALFss--ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 79 ELYEIRKRMGV-LFQQGALFSS--LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHHhheeE-Eeeccccccc--cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 234675 6777765544 899999998776654 46655556667777778876 46899999999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|||++.+|++|++||||+||||.....+-++|.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~ 190 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRE 190 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999888888753
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-36 Score=244.52 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=141.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-------CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------KP 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-------~~ 148 (254)
|+++.+++|+|++. +.|++||||++++|+|+||+|||||||||+||+|++++. |++|+ .++|-. .+
T Consensus 1 Ml~v~~l~K~y~~~---v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGSK---VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred CeeeeehhhhccCH---HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence 58999999999983 338899999999999999999999999999999999998 99999 666611 13
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
..+|... ...-++ ..+|+.||+.+..+.+++.......+..++.+.|++. .+..+..||.||||||+|||||+++
T Consensus 75 r~IGVl~--~e~glY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 75 RKIGVLF--GERGLY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hhcceec--CCcChh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 4456432 222222 2389999999999999987666677788888888876 5788899999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|+++|+|||++|||...++.+.+++.
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~ 177 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIK 177 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999998875
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.9e-35 Score=252.88 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=134.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
+++++||++.|++.. +++|+||++++|++++|+||||||||||||+|+|+++ |.+|+ .++|...
T Consensus 2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel 74 (258)
T COG1120 2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL 74 (258)
T ss_pred eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence 689999999999743 5699999999999999999999999999999999998 99999 6777532
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCC---CCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +++.....+ .+++.|.+...+.- .+.+ ...|.+.+.++++.+++. .++.+.+||||||||+.||+
T Consensus 75 Ak~ia~-vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 75 AKKLAY-VPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred hhhEEE-eccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 224454 676653332 26777766654432 1222 233445677888888876 57789999999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+.+|++|+|||||+.||..++.++++++.+
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998853
No 15
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-35 Score=245.06 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=138.8
Q ss_pred ceEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 76 ~~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
.+|+++||++.| ++.. +|++|||+|++||+|+|+|+||||||||||+|+|+.. |+.|+ .++|...
T Consensus 2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence 479999999999 4433 7799999999999999999999999999999999997 99999 5555211
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHH--------HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG 212 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~--------~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G 212 (254)
+.+.|. |.+....+.+ +++.+|.... ...++++...+.....++|+.+++. ...+..+||||
T Consensus 75 ~lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 75 ELRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred HHHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 345675 6665544444 6788877543 3356666666777889999999987 34567899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+|||+|||||+.+|++|+.|||++.|||.+.+.++++|..
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~ 192 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998853
No 16
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.6e-35 Score=257.91 Aligned_cols=169 Identities=16% Similarity=0.121 Sum_probs=137.5
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
.++++++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence 35799999999998743 7799999999999999999999999999999999998 99999 6666422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....|+ +.++...+ +.+++.+++.+....++...........++++.+++. .+..+..||+||+||+++|+||+
T Consensus 78 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 78 ARQRVGV-VPQFDNLD--PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred HHhcEEE-EeccCcCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 234565 55554332 2378999988766555544333334567788888775 46778899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+.+++.+++++.+
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~ 183 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRS 183 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.5e-34 Score=259.79 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=136.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
+++|+++||+|.|++.. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL 111 (340)
T ss_pred ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence 56899999999998743 6799999999999999999999999999999999998 99999 6666422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....|+ +.++...+. .+++.+++.+....++...........++++.+++. .+.++..||+||+||+++|+||+
T Consensus 112 ~~~~ig~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 112 ARARIGV-VPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred HhccEEE-EeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 233565 555533222 378889887655555543222334556778888776 57788899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+..+++++++|.+
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~ 217 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRS 217 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999864
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=261.64 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=137.8
Q ss_pred cceEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
|.+|+++||++.| ++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 4579999999999 6532 6799999999999999999999999999999999997 99999 6776422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....|. +.++...++ .+++.+|+.+.....+.........+.++++.+++. .+.++.+|||||+|||+|||||+
T Consensus 74 ~~r~ig~-v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~ 150 (356)
T PRK11650 74 ADRDIAM-VFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV 150 (356)
T ss_pred HHCCEEE-EeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 123554 566543332 379999998876554443333345677888888876 56788999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+..++.+.+.+.+
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 151 REPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=246.56 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=145.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------- 146 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-------- 146 (254)
++++++++++.|++. ..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|..
T Consensus 2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~ 75 (235)
T COG1122 2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL 75 (235)
T ss_pred ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence 578999999999875 226799999999999999999999999999999999998 99999 566643
Q ss_pred -CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 147 -~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....+|.+++..+..+.. -++.+++.|...+.|++......++.++++.+++. .+..+..|||||+|||+||.+|
T Consensus 76 ~~~~~vG~VfQnpd~q~~~--~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 76 ELRQKVGLVFQNPDDQLFG--PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred HhhcceEEEEECccccccc--CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence 145578744444444443 48899999999999987766777889999998886 5788889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++|||||||++||+..++++.+++.+
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~ 183 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKK 183 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.7e-34 Score=258.04 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=137.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
||+++||++.|+.......+|+|+||++++|+++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence 48999999999632112336799999999999999999999999999999999998 99999 6676422
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
+...|. +.++...+. ..++.+|+.+.....+.+......++.++++.+++. .+.++.+|||||+||++||||
T Consensus 78 ~~~r~~Ig~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 78 TKARRQIGM-IFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HHHhcCEEE-EECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 123554 555543332 268899988766555544333455678889988886 467889999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|++||+||||++||+..+..+.+++.+
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKE 185 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 21
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=258.86 Aligned_cols=170 Identities=17% Similarity=0.181 Sum_probs=139.6
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
.|++|+++||++.|++.. +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence 367899999999998633 6799999999999999999999999999999999998 99999 6776432
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....|. +.++.. ++. .+++.+|+.+..+..+........++.++++.+++. .+.++.+|||||+||+++||||+
T Consensus 76 ~~r~ig~-vfQ~~~-lfp-~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 76 QQRDICM-VFQSYA-LFP-HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred HHCCEEE-EeCCcc-cCC-CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 134454 555543 332 279999998876555544333456778888888876 46788999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++||||||+++||+..++++.+.|.+
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 181 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRE 181 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.1e-34 Score=258.97 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=139.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|+..
T Consensus 2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 56899999999998743 6699999999999999999999999999999999997 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|. +.++. .++. .+++.+|+.+.....+.........+.++++.+++. .+.++.+|||||+||+++||||+.
T Consensus 75 ~r~ig~-v~Q~~-~lfp-~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 75 KRDYGI-VFQSY-ALFP-NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred HCCEEE-EeCCc-ccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123454 55554 3332 279999998876655544334456778899988886 477889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++||||||+++||+..++++++.+.+
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=249.63 Aligned_cols=166 Identities=17% Similarity=0.270 Sum_probs=139.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC---------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------- 146 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~--------- 146 (254)
+|.++++++.|++.. +++||+++|+.||.++|+||||||||||||+|+|++. |+.|. .++++.
T Consensus 2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74 (345)
T ss_pred ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence 488999999999976 8899999999999999999999999999999999998 99999 566651
Q ss_pred CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-C-CCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 147 ~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~-~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....+|. +.++ |.++.+ +++.+|+.|..+.... + ......++.++|+.+.+. .+.|+.+|||||+|||++|||
T Consensus 75 ~~R~VGf-vFQ~-YALF~H-mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 75 RDRKVGF-VFQH-YALFPH-MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hhcceeE-EEec-hhhccc-chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 1234665 4444 444444 8999999998765532 2 345566778888888877 689999999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|+.+|++|+||||+..||...++++...+.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr 181 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLR 181 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHH
Confidence 999999999999999999999999988774
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.5e-34 Score=241.38 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=132.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
|++++|+++.|++..+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~l~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQP--ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI 75 (216)
T ss_pred CeEEEEEEEEecCCCee--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence 47899999999652112 5699999999999999999999999999999999997 99999 6666422
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|
T Consensus 76 ~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 76 PFLRRHIGM-VFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHHhceE-EecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 112454 555543222 268888887654443432222345667888888875 356778999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||+||||++||+..++.+.+++.+
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998854
No 25
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-34 Score=234.42 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=134.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCce-ecCCCCC---
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK--- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p---~~G~-~~~~~~~--- 147 (254)
++.+++++|++.|++.+ ||++||+.|+++++++|+||||||||||||++..+.. +.| ..|+ .++|+..
T Consensus 5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCcCceEEEEEEECCeeccCC
Confidence 46799999999999866 8899999999999999999999999999999999875 112 2366 4565322
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
+..+|- +.+....++ +++++|+.+..+..|+....-.+.+++.|+...+. .+.....|||||+
T Consensus 80 ~~d~~~lRr~vGM-VFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 80 KVDVVELRRRVGM-VFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred CCCHHHHHHHhee-eccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 234564 555554443 79999999999998875433344455666655543 3456678999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||++|||||+.+|+||+|||||++|||.+..+|-+++.+
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~e 194 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999998865
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.8e-34 Score=258.70 Aligned_cols=171 Identities=19% Similarity=0.190 Sum_probs=138.9
Q ss_pred CCcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----
Q 025366 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---- 147 (254)
Q Consensus 73 ~~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---- 147 (254)
.++++|+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 10 ~~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 10 SLSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVP 82 (375)
T ss_pred cCCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCC
Confidence 3567899999999998733 6699999999999999999999999999999999997 99999 6777432
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....|. +.++...++ .+++.+|+.+.....+.+.......+.++++.+++. .+.++.+|||||+|||++||||
T Consensus 83 ~~~r~ig~-vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 83 AENRHVNT-VFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159 (375)
T ss_pred HHHCCEEE-EecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 123454 555543322 379999998866544443332345667888888876 4778899999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||||||+++||+..++.+.+.|.+
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 189 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKA 189 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988853
No 27
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-34 Score=257.76 Aligned_cols=169 Identities=14% Similarity=0.089 Sum_probs=136.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA 73 (369)
T ss_pred CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence 45799999999998633 6699999999999999999999999999999999997 99999 5666322
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....++ +.++...++ .+++.+++.+.....+.........+.++++.+++. .+.++.+||+||+||+++|+||+.
T Consensus 74 ~~~i~~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 74 ERGVGM-VFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred HCCEEE-EeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 123454 566543322 378999988765544443323345677888888886 467788999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|||||||++||+..++.+.++|.+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999888753
No 28
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-33 Score=250.80 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=132.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (254)
+++++||++.|++.. +++++||++++|+++||+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence 689999999998733 6799999999999999999999999999999999997 99999 5666322 2
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...|+ +.++...+ +.+++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|+|++.+
T Consensus 77 ~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 77 VAIGV-VPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred hcEEE-EeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 23454 55554322 2368888887544434432222233456778877775 3677889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++|||||||++||+..++.+.+++.+
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998854
No 29
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-34 Score=239.30 Aligned_cols=166 Identities=18% Similarity=0.240 Sum_probs=128.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ...
T Consensus 1 l~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGSV--R--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN 73 (213)
T ss_pred CeeeeeEEEeCCe--e--eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence 4688999999863 2 5699999999999999999999999999999999997 99999 5666422 122
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+. .+++.+++.+.....+.........+.++++.+++.. +..+..||+||+||+++|++|+.+|+
T Consensus 74 i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 74 IGM-VFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred EEE-EcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 343 555433222 2578888765443333222222345677888887753 56778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+.+++.+.+++.+
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998854
No 30
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.7e-34 Score=239.87 Aligned_cols=170 Identities=18% Similarity=0.184 Sum_probs=129.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------- 148 (254)
|+++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA 77 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence 4688999999752100126799999999999999999999999999999999997 99999 56663211
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|
T Consensus 78 ~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (218)
T cd03255 78 AFRRRHIGF-VFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA 154 (218)
T ss_pred HHHhhcEEE-EeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence 12444 455433222 257888877654333332212234567888888876 356778999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++|||||||++||+..++.+.+++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (218)
T cd03255 155 LANDPKIILADEPTGNLDSETGKEVMELLRE 185 (218)
T ss_pred HccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 31
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-33 Score=240.32 Aligned_cols=172 Identities=13% Similarity=0.073 Sum_probs=132.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence 479999999999752111226799999999999999999999999999999999997 99999 66663221
Q ss_pred ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
...++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|
T Consensus 81 ~~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 81 KAELRNQKLGF-IYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHHHHhccEEE-EecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 23454 555543222 268888887643323332222334567888888875 3566789999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGE 190 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998854
No 32
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-33 Score=239.44 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=131.1
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (254)
|+++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 1 i~~~~~~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDF--E--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR 73 (220)
T ss_pred CEEEEEEEEECCE--E--eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence 4789999999863 3 5699999999999999999999999999999999997 99999 5666322 11
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++ +.++.... +.+++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|+|++.+|
T Consensus 74 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 74 RIGI-VFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred cEEE-ecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2444 55554322 2368888887654444433222344667888888876 36678899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+..++.+.++|.+
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~ 176 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEK 176 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998854
No 33
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=239.01 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=130.9
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEE
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVAT 153 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~ 153 (254)
++++|+++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ....++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~ 77 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY 77 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence 4688999999752111126799999999999999999999999999999999997 99999 5666422 233454
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|++.+|++||
T Consensus 78 -v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 78 -VFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred -Eeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 555443222 267888876654433432222345567888888875 356778999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+.+++.+.+++.+
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~ 176 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLD 176 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 34
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-34 Score=230.54 Aligned_cols=170 Identities=13% Similarity=0.179 Sum_probs=147.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCC
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD 150 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~ 150 (254)
|+++.+++++..|+... ..+++|+|++|.+||.+.++||||||||||+++++|++. |+.|+ .+++... ..+
T Consensus 1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae 75 (259)
T COG4525 1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE 75 (259)
T ss_pred CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence 57889999999999854 447799999999999999999999999999999999998 99999 5665422 345
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.|. +.++.-.++. +++.+|..+..+..|+.+....+...+.+..+++. .+.++-+|||||+||+.+||||+.+|+
T Consensus 76 rgv-VFQ~~~LlPW--l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 RGV-VFQNEALLPW--LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cee-EeccCccchh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 676 5666555444 79999999999999998877778888889888886 577888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+|+||||+..||.-.++++.+++-
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 35
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.8e-33 Score=237.31 Aligned_cols=167 Identities=14% Similarity=0.146 Sum_probs=129.8
Q ss_pred eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
|++++|+++.|+ +. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~l~~~~l~~~~~~~~--~--il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 1 MIEFHNVSKAYPGGV--A--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred CEEEEeeeEEeCCCc--e--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence 478999999994 42 2 6699999999999999999999999999999999997 99999 5666321
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +.++...+. .+++.+++.+.....+.........+.++++.+++.. +..+..||+||+||+++|+
T Consensus 74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 74 LPLLRRRIGV-VFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHhheEE-EecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 112343 555543222 2678888766543333322222345678888888753 5567899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++.+|++|||||||++||+.++..+.+++.+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998864
No 36
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.4e-35 Score=237.07 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=136.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.++.++||.|+|+.+. ++++|||+|++||||||+|||||||||.+.++.|+++ |++|+ .+++...
T Consensus 2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 56899999999999854 6699999999999999999999999999999999998 99999 6666432
Q ss_pred -CC--CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC--CccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 148 -PP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 -~~--~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
+. -.|+ ++|..- ++ .++++.+|+........... .....++.++++.+.+. .+.+...||||+|+|+.||
T Consensus 75 ~RArlGigY-LpQE~S-IF-r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 75 KRARLGIGY-LPQEAS-IF-RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred HHhhcCccc-ccccch-Hh-hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 12 2343 344332 22 24899999988776655322 23445577899988876 5677789999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||+.+|++++|||||+|.||.+..+|.+++.
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~ 183 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHH
Confidence 99999999999999999999999999988875
No 37
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.9e-33 Score=236.89 Aligned_cols=173 Identities=17% Similarity=0.079 Sum_probs=132.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
.++|+++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence 4679999999999752111125699999999999999999999999999999999997 99999 56663221
Q ss_pred -------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 149 -------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
...++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++
T Consensus 81 ~~~~~~~~~i~~-~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 81 ARAKLRAKHVGF-VFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHHHHhheEEE-EEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence 12443 455433222 257888876543222322222345567888888875 356788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++|+.+|++|||||||++||+..++.+.+++.+
T Consensus 158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 191 (228)
T PRK10584 158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191 (228)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998853
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-33 Score=235.78 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=130.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCCeE
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDVA 152 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~~g 152 (254)
++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ....+
T Consensus 1 l~~~~l~~~~~~~--~--~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGRV--T--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG 73 (210)
T ss_pred CEEEEEEEEECCE--E--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence 4688999999763 3 5699999999999999999999999999999999997 99999 6676432 22344
Q ss_pred EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
+ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|++|
T Consensus 74 ~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 74 Y-LPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred E-eccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 555543222 268888877654444433233345567788888775 35667899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||||++||+..++.+.+++.+
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~ 173 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRE 173 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 39
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-33 Score=254.29 Aligned_cols=169 Identities=14% Similarity=0.104 Sum_probs=137.3
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
++++|+++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|+++ |+.|+ .++|+..
T Consensus 16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 456899999999998633 6799999999999999999999999999999999998 99999 6777432
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....|. +.++...++ .+++.+|+.+.....+........++.++++.+++. .+.++..|||||+||+++||||+
T Consensus 89 ~~r~ig~-vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 89 YQRPINM-MFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred HHCCEEE-EeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 124565 555543332 379999998876554443333345677888888876 47788899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.+|++||||||+++||...++.+.+.+.
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 193 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVV 193 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999988886653
No 40
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-33 Score=240.38 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=128.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (235)
T cd03261 1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY 73 (235)
T ss_pred CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence 46889999998632 6699999999999999999999999999999999997 99999 5666321
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++...+. .+++.+++.+..... +.........+.++++.+++. .+..+..||+||+||+++|+|
T Consensus 74 ~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 74 RLRRRMGM-LFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHhcceEE-EccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 112344 555443222 368888876643322 122112234567788888875 366778999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++|||||||++||+..++.+.+++.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 181 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS 181 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-33 Score=253.92 Aligned_cols=167 Identities=13% Similarity=0.173 Sum_probs=137.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC--ce-ecCCCCC------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQVK------ 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~--G~-~~~~~~~------ 147 (254)
.|++++|++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++ |+ .++|...
T Consensus 5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 589999999998633 6799999999999999999999999999999999997 999 99 6676432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+||+||+|||++||||+.
T Consensus 78 ~r~ig~-vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 78 KRGLAL-LFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred HCCEEE-EECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 123554 555543 33 2379999998876655544333445678888888886 577889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++||||||+++||+..++++.+.|.+
T Consensus 155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~ 182 (362)
T TIGR03258 155 EPDVLLLDEPLSALDANIRANMREEIAA 182 (362)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998853
No 42
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-33 Score=249.16 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=135.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCce-ecCCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVKP---- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~-~~p~~G~-~~~~~~~~---- 148 (254)
|.+|+++||++.|+.....+.+|+||||+|++||++||+|+||||||||+++|+|+++. ..|++|+ .++|....
T Consensus 1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 56799999999997633224478999999999999999999999999999999999851 1137898 66764221
Q ss_pred --------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC-----CCCCCCCCChhhh
Q 025366 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG 214 (254)
Q Consensus 149 --------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~ 214 (254)
...+. +.++.....++.+++.+++....... +.........+.++++.+++. .+.++.+|||||+
T Consensus 81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~ 159 (326)
T PRK11022 81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS 159 (326)
T ss_pred HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence 13454 67765433334456666554433322 222223345678889999885 3578899999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||++||+||+.+|+|||+||||++||+..+.++.++|.+
T Consensus 160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~ 198 (326)
T PRK11022 160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198 (326)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998854
No 43
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-33 Score=241.99 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=131.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeE
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA 152 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g 152 (254)
|++++|+++.|++. . +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ....+
T Consensus 1 ml~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 1 MLQISHLYADYGGK--P--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG 73 (255)
T ss_pred CEEEEEEEEEeCCe--e--eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence 47899999999863 2 5699999999999999999999999999999999997 99999 5666422 12345
Q ss_pred EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
+ +.++...+ +.+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|++|
T Consensus 74 ~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 74 V-VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred E-EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4 55554322 2257888876544333432222334567888888875 35677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||||++||+..++.+.++|.+
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999998853
No 44
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.2e-33 Score=247.72 Aligned_cols=167 Identities=16% Similarity=0.148 Sum_probs=135.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (254)
.++++|+++.|++.. +++|+||++++|+++||+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence 489999999998633 6799999999999999999999999999999999998 99999 6666432 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...|+ +.++...+ +.+++.+++.+....++.+.......+.++++.+++. .+.++..||+||+||+++|+|++.+
T Consensus 75 ~~ig~-~~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 75 RNIGY-LPEHNPLY--LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred hceEE-ecCCCCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 23454 45543322 2368889888766555544333345677888888876 4678889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++|||||||++||+..++.+++++.+
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 45
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.9e-33 Score=236.65 Aligned_cols=171 Identities=15% Similarity=0.122 Sum_probs=133.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (254)
+++++||++.|++..+...+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence 47899999999864111126699999999999999999999999999999999997 99999 5666322 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|++.+
T Consensus 78 ~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (218)
T cd03266 78 RRLGF-VSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD 154 (218)
T ss_pred hhEEE-ecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence 23444 555543222 268888887654444433222345667888888876 3667889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+..++.+.+++.+
T Consensus 155 p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 155 PPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 46
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-33 Score=251.42 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=134.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
||+++||++.|+.......+++++||++++|+++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence 48899999999721111226799999999999999999999999999999999997 99999 6666321
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+.++.+||+||+||+++|+|
T Consensus 78 ~~~~~~ig~-v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 78 RKARRQIGM-IFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred HHHhcCEEE-EeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 123454 555543222 268889887765544543323345667888888876 356788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|++|||||||++||+..+..+.++|.+
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~ 185 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKD 185 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 47
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.1e-33 Score=235.63 Aligned_cols=170 Identities=15% Similarity=0.079 Sum_probs=129.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER 77 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence 37899999999752111226699999999999999999999999999999999997 99999 56663210
Q ss_pred -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
...++ +.++...+. .+++.+++.+...............+.++++.+++. .+..+..||+||+||+++|+
T Consensus 78 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 78 AKLRNKKLGF-IYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HHHHHhcEEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 22444 555543222 267888876643322222212234567788888775 35677899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+++.+|++|||||||++||+.+++.+.+++.
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 185 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLML 185 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999885
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-33 Score=237.82 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=131.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
|++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence 47899999999763100126699999999999999999999999999999999998 99999 6666422
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 78 ~~~~~~i~~-~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 78 RKARRRIGM-IFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred HHHHhheEE-EccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence 112343 555543222 368888876654333332222234567788888875 356778999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++|||||||++||+.+++.+.+++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 185 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRD 185 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 49
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.2e-33 Score=236.02 Aligned_cols=168 Identities=18% Similarity=0.154 Sum_probs=130.5
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (254)
|+++||++.|++.... +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 1 l~~~~l~~~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGTKP--AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCCce--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence 4688999999752112 6799999999999999999999999999999999997 99999 5666432 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++ +.++...+. ..++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|
T Consensus 76 ~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 76 SLGY-CPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred hEEE-ecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 2444 555433222 267888877655444433222234567788888775 35677899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+..++.+.+++.+
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~ 178 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILE 178 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998854
No 50
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=236.09 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=142.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCCe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV 151 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~~ 151 (254)
++++++|+|+||+.. |++|+||++++|++.|++|+|||||||++|+|.|++. |+.|+ .++|... ...+
T Consensus 2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence 589999999999966 8899999999999999999999999999999999998 99999 5666432 2345
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
|++-.-.|.+ +.+++.+.+.+.....|++.......+..+++.+.+. ...++.+||.|++|++.+..+++++|++
T Consensus 75 GyLPEERGLy---~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 75 GYLPEERGLY---PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred ccChhhhccC---ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 5532233332 2389999999999999999888888899999999887 4567889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhh
Q 025366 230 VIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 230 lIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+||||||+||||.+.+-+.+.+-
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~ 174 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIF 174 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHH
Confidence 99999999999999998888764
No 51
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-33 Score=243.71 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=134.4
Q ss_pred eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
.|++++|++.|+.... ...+++++||++++|+++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence 4899999999975211 1126799999999999999999999999999999999997 99999 6666322
Q ss_pred ---CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhh
Q 025366 148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 ---~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~i 219 (254)
....|+ +.++. ..++. .++.+++.+.....++........+.++++.+++. .+.++..||+||+||++|
T Consensus 79 ~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 79 SDIRKKVGL-VFQYPEYQLFE--ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred HHHhhceEE-EecCchhcccc--ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 123454 55553 22222 58888887655444543322334567888888885 467788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+.+|++||+||||++||+..+.++.++|.+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998853
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.8e-33 Score=234.52 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=128.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ...
T Consensus 1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD 73 (213)
T ss_pred CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence 46899999998732 5699999999999999999999999999999999997 99999 5666321 112
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+ ...++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 74 IAM-VFQNYALY--PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred EEE-EecChhhc--cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 343 55544322 2267888876643333322222234566778887775 466778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+..++.+.+++.+
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998853
No 53
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-33 Score=237.66 Aligned_cols=167 Identities=16% Similarity=0.223 Sum_probs=129.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (254)
+++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 2 ~l~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGDF--V--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER 74 (239)
T ss_pred EEEEEeEEEEECCE--E--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 48999999999863 3 5699999999999999999999999999999999997 99999 5666321 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC----CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~----~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
..++ +.++...+. .+++.+++.+.....+. ........+..+++.+++. .+..+..||+||+||+++|+|+
T Consensus 75 ~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 75 NVGF-VFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred ceEE-EecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 2444 555543222 26788887654332222 1111123456778888775 3567789999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..++.+.+++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=8.2e-33 Score=236.86 Aligned_cols=167 Identities=18% Similarity=0.133 Sum_probs=129.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~l~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGAR--R--ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL 73 (236)
T ss_pred CEEEEeeEEEECCE--E--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence 47899999999863 2 5699999999999999999999999999999999997 99999 56663211
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...++ +.++....+ .+++.+++.......+.........+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 74 ~~i~~-~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 74 ARLGV-VFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhEEE-eCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 12343 455433222 267888776543333322222234567778887775 3567789999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+..++.+.+++.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998853
No 55
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.7e-33 Score=233.76 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=127.3
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------C
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------P 149 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------~ 149 (254)
+++|+++.|++..+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|.... .
T Consensus 1 ~~~~l~~~~~~~~~~--il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 1 ELKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred CceeEEEecCCCCee--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence 367899999762112 6699999999999999999999999999999999997 99999 56663221 1
Q ss_pred CeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 150 DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 150 ~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
..++ +.++.. .++ .+++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|+|++.+
T Consensus 76 ~i~~-~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 76 KVGL-VFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred hceE-EecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2344 555532 122 257888776543333322112234567788888775 3567889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+..++.+.+++.+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998853
No 56
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1e-32 Score=238.07 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=130.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL 73 (250)
T ss_pred CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence 35799999999998632 5699999999999999999999999999999999997 99999 5665321
Q ss_pred ----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhh
Q 025366 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~ 214 (254)
....++ +.++...++ ..++.+++.+.... .+.........+.++++.+++. .+..+..||+||+
T Consensus 74 ~~~~~~~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~ 150 (250)
T PRK11264 74 SQQKGLIRQLRQHVGF-VFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ 150 (250)
T ss_pred cchhhHHHHhhhhEEE-EecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence 112343 555543222 25788887653322 2222212234566778888775 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998753
No 57
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=246.15 Aligned_cols=175 Identities=15% Similarity=0.126 Sum_probs=136.7
Q ss_pred cceEEEecceeeccccc------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC
Q 025366 75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~ 147 (254)
+++|+++||++.|+... ..+.+++||||+|++|+++||+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 46899999999996321 12347899999999999999999999999999999999997 99999 6666321
Q ss_pred -----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC---CCCCCCCCChh
Q 025366 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (254)
Q Consensus 148 -----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (254)
....+. +.++.+...++.+++.+++.+..... +.........+.++++.+++. .+.++.+||||
T Consensus 80 ~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG 158 (327)
T PRK11308 80 LKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG 158 (327)
T ss_pred CcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence 223454 67775433334467766665433332 232223345678889998885 47788999999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||++||+||+.+|++||+||||++||...+.++.++|.+
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~ 199 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD 199 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998854
No 58
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.3e-33 Score=249.65 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=134.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (254)
+|+++||++.|++.. +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|... ..
T Consensus 2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR 74 (353)
T ss_pred EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence 488999999998733 6799999999999999999999999999999999997 99999 6777432 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHc----CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
..++ +.++...++ .+++.+|+.+..... +.........+.++++.+++. .+.++.+|||||+||+++|+||
T Consensus 75 ~i~~-v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 75 KVGF-VFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CEEE-EecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 3554 566543322 278999988765432 112222345677888888876 4678899999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..++++.++|.+
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988864
No 59
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.9e-33 Score=234.82 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=128.8
Q ss_pred eEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
|++++|+++.| ++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~l~~~~l~~~~~~~~--~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 1 MIRFEHVSKAYLGGR--Q--ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred CEEEEeeEEEecCCC--e--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 47899999999 542 2 5699999999999999999999999999999999997 99999 5666321
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +.++...++ ..++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+
T Consensus 74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 74 VPFLRRQIGM-IFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HHHHHhheEE-EecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 112344 555543222 257888776644333332222233456778887775 35677899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 60
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.7e-33 Score=253.04 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=133.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 45799999999998733 6699999999999999999999999999999999998 99999 6666321
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--CC--CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g~--~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
....|+ +.++....+. +++.+++.+.+..+ .+ ....+...+.++++.+++. .+.++.+||+|||||++|
T Consensus 74 ~~~~~ig~-v~q~~~l~~~--~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 74 AASRRVAS-VPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred HHhcceEE-EccCCCCCCC--CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 123555 5555433222 68888776543211 11 1223345678888888886 467788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+.+|++|||||||++||+..+.+++++|.+
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998864
No 61
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.2e-32 Score=240.37 Aligned_cols=169 Identities=14% Similarity=0.192 Sum_probs=131.0
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
+++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS 77 (269)
T ss_pred cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence 46899999999997632 5699999999999999999999999999999999997 99999 6666321
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
....++ +.++...+. .+++.+++.+..... +.........+.++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~~~~~~i~~-v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 78 RLYTVRKRMSM-LFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred hHHHHhhcEEE-EecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 112444 555543222 267888876543222 111111223456778888776 466788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++++.+|++|||||||++||+.+++.+.+++.+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998864
No 62
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.1e-33 Score=234.49 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=127.0
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEE
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATV 154 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~ 154 (254)
+++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ....++
T Consensus 1 ~~~~l~~~~~~~--~--~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~- 72 (213)
T cd03235 1 EVEDLTVSYGGH--P--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY- 72 (213)
T ss_pred CcccceeEECCE--E--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE-
Confidence 367999999863 2 5699999999999999999999999999999999997 99999 6666432 233454
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHc-CC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
+.++.........++.+++.+..... .. ........+.++++.+++. .+.++.+||+||+||+++|+|++.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 55543321111257888776532211 11 1112234567788887775 456788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+..++.+.+++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 63
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.2e-33 Score=231.68 Aligned_cols=161 Identities=17% Similarity=0.113 Sum_probs=127.2
Q ss_pred EEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCCe
Q 025366 79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDV 151 (254)
Q Consensus 79 ~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~ 151 (254)
+++||++.|++ .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ....
T Consensus 1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence 36799999976 33 6799999999999999999999999999999999997 99999 5666432 1234
Q ss_pred EEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 152 ATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 152 g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
++ +.++.. .++ ..++.+++.+.....+ .....+.++++.+++. .+..+..||+||+||+++|+|++.+|+
T Consensus 74 ~~-~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 74 GY-VMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EE-EecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 54 555532 222 2578887765432221 1235677888888876 466778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+..++.+.+++.+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~ 171 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRE 171 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.9e-33 Score=235.79 Aligned_cols=166 Identities=21% Similarity=0.234 Sum_probs=128.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA 73 (232)
T ss_pred CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence 46889999998633 6699999999999999999999999999999999997 99999 5666321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|++.
T Consensus 74 ~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 74 RLGIGY-LPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred hccEEE-ecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 112343 455443222 268888876644333322222234556788887775 356778999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|||||||++||+.+++.+.+++.+
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998854
No 65
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.4e-32 Score=246.27 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=136.6
Q ss_pred cceEEEecceeeccccc---------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC
Q 025366 75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~---------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~ 144 (254)
.++|+++||++.|+... ..+.+++|+||+|++||+++|+|+||||||||+++|+|++. |++|+ .++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G 82 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG 82 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence 46899999999996411 12347799999999999999999999999999999999997 99999 6776
Q ss_pred CCC-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--CCCCCccHHHHHHHHHhhccC---CCCCCCC
Q 025366 145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPS 208 (254)
Q Consensus 145 ~~~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g~~~~~~~~~~~~~l~~l~l~---~~~~~~~ 208 (254)
... ....+. +.++......+.+++.+++.+....+ +.........+.++++.+++. .+.++.+
T Consensus 83 ~~i~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 83 KDLLGMKDDEWRAVRSDIQM-IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred EECCcCCHHHHHHHhCceEE-EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 432 123444 67765321233368888877654433 222222334567888888884 4778899
Q ss_pred CChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 209 lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||+||++||+||+.+|++||+||||++||...+.++.++|.+
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 206 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ 206 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998864
No 66
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.8e-33 Score=231.68 Aligned_cols=164 Identities=11% Similarity=0.007 Sum_probs=128.2
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----------
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------- 147 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----------- 147 (254)
++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 i~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~ 73 (206)
T TIGR03608 1 LKNISKKFGDK--I--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF 73 (206)
T ss_pred CcceEEEECCE--E--EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence 46899999863 3 5699999999999999999999999999999999997 99999 5666431
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....++ +.++...+. ..++.+++.+.....+.........+.++++.+++. .+..+.+||+||+||+++|+||+
T Consensus 74 ~~~~i~~-~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 74 RREKLGY-LFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHhCeeE-Eecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 112443 444433222 268888877644333333223345667888888875 46677899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 179 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLE 179 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 67
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-32 Score=230.30 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=130.0
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (254)
+++++++++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... .
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence 478999999998632 5699999999999999999999999999999999997 99999 5666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...++ +.++... .+.+++.+++.+.....+. .+...+.++++.+++. .+.++..||+||+||+++|+|++.+
T Consensus 74 ~~~~~-~~~~~~~--~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 74 QDLLY-LGHQPGI--KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hheEE-eCCcccc--CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 22343 3433322 2236888888765433221 2345667888888875 4667889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+||||++||+..++.+.++|.+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 68
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-33 Score=230.96 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=135.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
+++++++||+..|+..+ +|++|||++++|||++|+|+||+|||||+|+|+|+.+ +.+|+ .++|+...
T Consensus 1 ~~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~ 73 (237)
T COG0410 1 APMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPH 73 (237)
T ss_pred CCceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHH
Confidence 36899999999999855 7799999999999999999999999999999999997 88999 67775331
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC--CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
...|....-.+..++. .+|+.||+........- .+..+.+.+.+++-+|..-.+.....|||||+|-++|||||+
T Consensus 74 ~r~r~Gi~~VPegR~iF~-~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 74 ERARLGIAYVPEGRRIFP-RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred HHHhCCeEeCcccccchh-hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 1223322333444443 38999998765433221 122225566677777777788899999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|+||||+.||-|...++|.+.|.+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-32 Score=232.16 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=128.9
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------- 148 (254)
++++|+++.|++. +. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNG-TA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCC-ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence 4688999999642 22 5699999999999999999999999999999999997 99999 56664221
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+++
T Consensus 75 ~~~~~i~~-v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 75 YLRRKIGV-VFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHheEE-EecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 12343 555443222 268888877654433332222234567788887775 3567789999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..++.+.+++.+
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 181 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK 181 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998854
No 70
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-32 Score=232.17 Aligned_cols=165 Identities=18% Similarity=0.144 Sum_probs=129.4
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (254)
++++++++.|++. . +++++||++++| +++|+||||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 1 i~~~~~~~~~~~~--~--~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGKK--R--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR 72 (211)
T ss_pred CEEEEEEEEECCE--E--EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence 4688999999763 2 569999999999 999999999999999999999997 99999 5666432 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|++.+|
T Consensus 73 ~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 73 RIGY-LPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred heEE-ecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2343 555543322 268888877654433332222234567788888775 36678899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+.+++.+.+++.+
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 71
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-32 Score=251.07 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=122.9
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------------CCCeEEEeeCCCCCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------PPDVATVLPMDGFHL 162 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------------~~~~g~~i~~~~~~~ 162 (254)
+++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|... ....++ +.++...+
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy-v~Q~~~l~ 118 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAM-VFQSFALM 118 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEE-EECCCcCC
Confidence 6799999999999999999999999999999999998 99999 6666421 123555 55554332
Q ss_pred CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD 240 (254)
+ .+++.+++.+.....+.........+.++++.+++. .+.++.+||+||+||+++|+||+.+|++|||||||++||
T Consensus 119 ~--~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 119 P--HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred C--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 2 268899988765544543333345677888888886 467788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 025366 241 GGVWKDVSSMFDE 253 (254)
Q Consensus 241 ~~~~~~l~~ll~~ 253 (254)
+..++.+.++|.+
T Consensus 197 ~~~r~~l~~~L~~ 209 (400)
T PRK10070 197 PLIRTEMQDELVK 209 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998853
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.5e-32 Score=230.81 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=128.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------CC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------PD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------~~ 150 (254)
++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|.... ..
T Consensus 1 l~~~~l~~~~~~~--~--~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGKK--R--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR 73 (208)
T ss_pred CEEEEEEEEECCe--E--eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence 4689999999763 2 6699999999999999999999999999999999997 99999 66664321 22
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...++ .+++.+++.+.....+. ....+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 74 IGA-LIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EEE-ecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 343 555443222 26888887665433321 345667788888775 356778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+..++.+.+++.+
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILS 171 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988864
No 73
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.2e-32 Score=232.01 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=128.1
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 l~~~~l~~~~~~~--~--~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (213)
T cd03262 1 IEIKNLHKSFGDF--H--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE 73 (213)
T ss_pred CEEEEEEEEECCe--E--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence 4688999999863 3 5699999999999999999999999999999999997 99999 6666422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....++ +.++...+. .+++.+++.+... ..+.........+.++++.+++. .+..+..||+||+||+++|+++
T Consensus 74 ~~~~i~~-~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 74 LRQKVGM-VFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHhcceE-EecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 112344 555443222 2578888765432 22222222234567778887775 3677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 180 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKD 180 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
No 74
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-32 Score=241.80 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=134.4
Q ss_pred eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
.++++||++.|++... ...+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4899999999975211 1226799999999999999999999999999999999997 99999 67774321
Q ss_pred ------CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 149 ------~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (254)
...|+ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+.++..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 79 KLKPLRKKVGI-VFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred hHHHHHhhEEE-EeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 23454 555532 2332 58888887665555543333334667888888885 36778999999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|+.+|++||+||||++||+..+..+.+++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~ 190 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-32 Score=240.06 Aligned_cols=169 Identities=17% Similarity=0.161 Sum_probs=132.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++||++.|+.. .. +++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 3 ~~l~~~~l~~~~~~~-~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW 76 (274)
T ss_pred ceEEEEEEEEEeCCC-Ce--eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence 479999999999632 22 6799999999999999999999999999999999997 99999 66664321
Q ss_pred --CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 --~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...++ +.++.. .++. .++.+++.+.....+.........+..+++.+++. .+..+..||+||+||+++|+||
T Consensus 77 ~~~~i~~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 77 VRSKVGL-VFQDPDDQVFS--STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHhhEEE-EecChhhhhcc--CcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 23454 555532 2222 58888887654433332222234567788887775 4667889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..+.++.+++.+
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998853
No 76
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.6e-32 Score=232.10 Aligned_cols=173 Identities=18% Similarity=0.202 Sum_probs=127.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence 47899999999763101125699999999999999999999999999999999997 99999 56663211
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCcc-HHH-HHHHHHhhccC---CCCCCCCCChhhhhhHhh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~-~~~-~~~~l~~l~l~---~~~~~~~lS~G~~qrv~i 219 (254)
...++ +.++........+++.+++.+.....+...... ... ..++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~~~~i~~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 78 KIRRKEIQM-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred HHhhccEEE-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 12444 555542112223678888765433332211111 112 23677777774 366788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++++.+|++|||||||++||+.+++.+.+++.+
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998853
No 77
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-32 Score=235.36 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=129.8
Q ss_pred EEEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+++++|++.|++ .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 468899999986 33 6799999999999999999999999999999999997 99999 56664221
Q ss_pred -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC----CCCCCCCChhhhhhHhhhhhh
Q 025366 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv~ia~al 223 (254)
...++ +.++...+. .+++.+++.+.....+.........+.++++.+++.. +..+.+||+||+||+++|+++
T Consensus 74 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 74 RRKIGY-VIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred hcceEE-EccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH
Confidence 12343 455433222 2688888876543333322223345678888888763 567789999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 180 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKR 180 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988754
No 78
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-32 Score=240.30 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=132.7
Q ss_pred eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
+++++||++.|++... ...+++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 6899999999974210 1126799999999999999999999999999999999998 99999 67774321
Q ss_pred ------CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366 149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 149 ------~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (254)
...++ +.++.. .++. +++.+++.+.....+.........+.++++.+++. .+..+..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 79 NLKKLRKKVSL-VFQFPEAQLFE--NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred hHHHHHhceEE-EEeChhhhhcc--chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence 12454 555531 2222 58888886644433332222334567888888885 36778899999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++++.+|++|||||||++||+..++.+.+++.+
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 190 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD 190 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 79
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-32 Score=242.54 Aligned_cols=171 Identities=12% Similarity=0.136 Sum_probs=135.0
Q ss_pred eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
+|+++||++.|++... ...+++++||+|++|++++|+|+||||||||+++|+|+++ |++|+ .+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence 5899999999975311 1126799999999999999999999999999999999998 99999 5554211
Q ss_pred -------------------------CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC
Q 025366 148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (254)
Q Consensus 148 -------------------------~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~ 201 (254)
....|+ +.++. ..++. .++.+++.+.....+.........+.++++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 155 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV-VFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD 155 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEE-EeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 112455 55543 22332 48888887765555554434455678889998885
Q ss_pred ---CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 202 ---~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+.++..||+||+||+++|++|+.+|++|||||||++||+..++.+.++|.+
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~ 210 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN 210 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999998853
No 80
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-32 Score=243.92 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=133.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCce-ecCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVK----- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~-~p~~G~-~~~~~~~----- 147 (254)
|++|+++||++.|+.......+++|+||+|++||++||+|+||||||||+++|+|+++.. .|++|+ .++|...
T Consensus 1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 468999999999953212233779999999999999999999999999999999998411 247899 6676422
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc---CC--CC-CccHHHHHHHHHhhccCC-----CCCCCCC
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSF 209 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~---g~--~~-~~~~~~~~~~l~~l~l~~-----~~~~~~l 209 (254)
....+. +.++.....++.+++.+++.+..... +. .. ......+.++++.+++.. +.++.+|
T Consensus 81 ~~~~~~~~~~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L 159 (330)
T PRK15093 81 RERRKLVGHNVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL 159 (330)
T ss_pred HHHHHHhCCCEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence 113454 67765433333456766665432211 10 01 122346788999998863 5788899
Q ss_pred ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||+||++||+||+.+|++||+||||++||+..+.++.++|.+
T Consensus 160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 203 (330)
T PRK15093 160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTR 203 (330)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999864
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-32 Score=232.17 Aligned_cols=165 Identities=16% Similarity=0.125 Sum_probs=128.6
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh-----cccCCCCce-ecCCCCC----
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQVK---- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll-----~~~~p~~G~-~~~~~~~---- 147 (254)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|++ + |++|+ .++|...
T Consensus 1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~ 73 (227)
T cd03260 1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD 73 (227)
T ss_pred CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence 46899999998743 679999999999999999999999999999999998 7 99999 5666421
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhccCC--CCC--CCCCChhhhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDP 216 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~~--~~~--~~~lS~G~~qr 216 (254)
....++ +.++... + .+++.+++.+.....+.... .....+.++++.+++.. +.. +..||+||+||
T Consensus 74 ~~~~~~~~~i~~-~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 74 VDVLELRRRVGM-VFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred hHHHHHHhhEEE-EecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 112444 5555432 2 26888887664433332211 12345677888888763 233 58999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 186 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAE 186 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 82
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4e-32 Score=243.32 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=134.9
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCC--
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~-- 147 (254)
.+++|+++||++.|+.....+.+++||||+|++||++||+|+||||||||+++|+|+++ |+ +|+ .++|...
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN 85 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence 46789999999999642222347799999999999999999999999999999999997 65 898 6776432
Q ss_pred ---------C-CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccCC-----CCCCCCCCh
Q 025366 148 ---------P-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (254)
Q Consensus 148 ---------~-~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~ 211 (254)
+ ..++. +.++.....++.+++.+++.+.....+ .........+.++++.+++.. +.++.+|||
T Consensus 86 ~~~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg 164 (330)
T PRK09473 86 LPEKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG 164 (330)
T ss_pred CCHHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence 1 23454 677754333444677776654333322 222222345677888887752 458889999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||++||+||+.+|++||+||||++||...+.++.++|.+
T Consensus 165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 206 (330)
T PRK09473 165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998853
No 83
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-32 Score=234.30 Aligned_cols=167 Identities=17% Similarity=0.140 Sum_probs=129.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
+++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~l~~~~l~~~~~~~--~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (242)
T PRK11124 2 SIQLNGINCFYGAH--Q--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred EEEEEeeEEEECCe--e--eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence 58999999999863 3 5699999999999999999999999999999999997 99999 6666421
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHH-HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ 218 (254)
....++ +.++...+. .+++.+++... ....+.........+.++++.+++. .+..+..||+||+||++
T Consensus 75 ~~~~~~~~~i~~-~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 75 KAIRELRRNVGM-VFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hhHHHHHhheEE-EecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 112343 555433222 25788877542 2223332222234567778888775 36677899999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=234.85 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=129.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.++++++|++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~~~l~~~~l~~~~~~~--~--~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 1 MATLTAKNLAKAYKGR--R--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred CceEEEeCcEEEeCCE--E--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 4579999999999863 2 6699999999999999999999999999999999997 99999 5666321
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +.++...+. .+++.+++.+.....+ .........+.++++.+++. .+..+..||+||+||+++|+
T Consensus 74 ~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (241)
T PRK10895 74 ARARRGIGY-LPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR 150 (241)
T ss_pred HHHHhCeEE-eccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence 122343 555433222 2577787765432111 11112234567778877765 35677899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++.+|++||+||||++||+..++.+.+++.+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999888753
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.5e-32 Score=236.03 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=127.5
Q ss_pred eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
+++++||++.|+ +. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~l~~~~l~~~~~~~~--~--il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 1 MLEVENLSKVYPNGK--Q--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK 73 (243)
T ss_pred CeEEEeeeeecCCCc--c--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence 478999999997 43 2 5699999999999999999999999999999999997 99999 6666321
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--------cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~ 213 (254)
....++ +.++...++ .+++.+++.+.... .+.........+.++++.+++. .+..+..||+||
T Consensus 74 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 74 LRKLRRRIGM-IFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHhheEE-EcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 112444 555433222 25777776542111 0111112234567788888775 366788999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|+|++.+|++||+||||++||+..++.+.++|.+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998853
No 86
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-32 Score=238.94 Aligned_cols=167 Identities=19% Similarity=0.175 Sum_probs=127.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
||+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence 488999999998633 6699999999999999999999999999999999997 99999 56664321
Q ss_pred ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 74 ~~~~~i~~-v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 74 ALRQQVAT-VFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred HHHhheEE-EeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 12344 555432 1221 35566665543333332222233456777777764 466788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|++|||||||++||+..+..+.++|.+
T Consensus 151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 181 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 87
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-32 Score=243.63 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=126.0
Q ss_pred eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CCCeEEEee
Q 025366 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLP 156 (254)
Q Consensus 85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~ 156 (254)
|.|++.. +++++||++++|+++||+||||||||||+|+|+|+++ |++|+ .++|... ....|+ +.
T Consensus 1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~ 72 (302)
T TIGR01188 1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VP 72 (302)
T ss_pred CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ec
Confidence 4576532 6799999999999999999999999999999999997 99999 6666422 123455 55
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE 234 (254)
++...+ +.+++.+++.+....++.........+.++++.+++. .+.++..||+||+||+++|+|++.+|++|||||
T Consensus 73 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 73 QYASVD--EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 544322 2378889887765555543222344577888888886 467788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhc
Q 025366 235 NYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 235 p~~~lD~~~~~~l~~ll~~ 253 (254)
||++||+..++.+.+++.+
T Consensus 151 Pt~gLD~~~~~~l~~~l~~ 169 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRA 169 (302)
T ss_pred CCcCCCHHHHHHHHHHHHH
Confidence 9999999999999998864
No 88
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-32 Score=237.99 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=132.1
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
|++++++||++.|++. .. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~~~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCYSYSGS-KE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEEEeCCC-Cc--eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 5689999999999642 12 6799999999999999999999999999999999997 99999 66664221
Q ss_pred ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|
T Consensus 75 ~~~~~i~~-v~q~~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 75 EVRKFVGL-VFQNPDDQIFS--PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHhheEE-EecCccccccc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 12454 555532 2222 57888876544333332222234567788887775 466788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|++||+||||++||+.+++.+.+++.+
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998853
No 89
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-32 Score=239.40 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=134.5
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++||++.|++.. ...+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD 78 (279)
T ss_pred ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 4799999999997421 1126799999999999999999999999999999999998 99999 67764321
Q ss_pred --CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 --~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...+. +.++.. .+.. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|+
T Consensus 79 ~~~~i~~-v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral 155 (279)
T PRK13650 79 IRHKIGM-VFQNPDNQFVG--ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV 155 (279)
T ss_pred HHhhceE-EEcChHHhccc--ccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 23454 555532 2222 57888887655444443323345677888888886 4677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..++.+.+++.+
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 90
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.7e-32 Score=228.50 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=127.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PD 150 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----~~ 150 (254)
+++++||++.|++.. +++++||+|++|++++|+|+||||||||+++|+|+++ |++|+ .++|.... ..
T Consensus 2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 74 (207)
T PRK13539 2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA 74 (207)
T ss_pred EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence 589999999998633 6799999999999999999999999999999999997 99999 56664211 12
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+ ...++.+++.+.....+ .....+.++++.+++.. +.++..||+||+||+++|++++.+|+
T Consensus 75 ~~~-~~~~~~~~--~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 75 CHY-LGHRNAMK--PALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cEE-ecCCCcCC--CCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 343 33332221 22577787765433222 12245678888887753 66778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+..++++.++|.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 91
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-32 Score=233.80 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=128.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------- 148 (254)
++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 l~~~~l~~~~~~~--~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (236)
T cd03219 1 LEVRGLTKRFGGL--V--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA 73 (236)
T ss_pred CeeeeeEEEECCE--E--EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence 4688999999863 2 5699999999999999999999999999999999997 99999 56663221
Q ss_pred -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC----------CCccHHHHHHHHHhhccC--CCCCCCCCChhhhh
Q 025366 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~----------~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~q 215 (254)
...++ +.++...+. .+++.+++.+.....+.. .......+.++++.+++. .+..+.+||+||+|
T Consensus 74 ~~~i~~-v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 74 RLGIGR-TFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred hcCEEE-Eeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 12343 455433222 268888876654332211 111233567788888775 35677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 188 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998853
No 92
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-32 Score=240.18 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=134.4
Q ss_pred eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
||+++||++.|+.... ...+++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4889999999974211 1126799999999999999999999999999999999997 99999 6776432
Q ss_pred -----CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366 148 -----PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 148 -----~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (254)
....|+ +.++. ..++. .++.+++.+.....+.+.......+.++++.+++. .+..+..||+||+||++
T Consensus 78 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 78 EIKPVRKKVGV-VFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred cHHHHHhhEEE-EecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence 123454 55553 22332 48888887766555543333345567888888874 36778899999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|+.+|++|||||||++||+.+++.+.+++.+
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~ 189 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES 189 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998853
No 93
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-32 Score=233.05 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=127.0
Q ss_pred EEEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
++++||++.|++ .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence 468899999975 32 6799999999999999999999999999999999997 99999 66664221
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--------cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG 214 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~ 214 (254)
...++ +.++...+. .+++.+++.+.... .+.........+.++++.+++. .+..+.+||+||+
T Consensus 74 ~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 74 RQLRRQIGM-IFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred HHHHhccEE-EcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 12343 555433222 25777777543211 1111122334567788888775 3667889999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|+||||||||++||+..++.+.++|.+
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998854
No 94
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=233.84 Aligned_cols=172 Identities=17% Similarity=0.083 Sum_probs=131.0
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~---- 147 (254)
|++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++. ..|++|+ .++|...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 56899999999998632 66999999999999999999999999999999999851 0136999 5666422
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC--CCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++...+. .+++.+++.+.....+.. .......+.++++.+++. .+..+.+||+||+|
T Consensus 77 ~~~~~~~i~~-v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 77 VIELRRRVQM-VFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred HHHHhccEEE-EeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 123454 555543222 268888887643322221 111234567788888763 35677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|++||+||||++||+..++.+.++|.+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 95
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.6e-32 Score=233.37 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=129.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+++++|+++.|++. . +++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~l~~~~l~~~~~~~--~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 1 MIEFKNVSKHFGPT--Q--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred CEEEEeEEEEECCe--E--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 47899999999863 2 5699999999999999999999999999999999997 99999 66663221
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++...++ .+++.+++.+... ..+.........+.++++.+++. .+..+..||+||+||+++|++
T Consensus 74 ~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 74 LIRQEAGM-VFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HHhhceEE-EecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 12344 555433222 2578887765332 12222222334567788888775 356778999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998853
No 96
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.98 E-value=3.3e-32 Score=230.75 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=125.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (222)
T cd03224 1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA 73 (222)
T ss_pred CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence 46899999998632 6699999999999999999999999999999999997 99999 6666321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhh-ccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....++ +.++...+ +.+++.+++.+.....+ ..........+++.+ .+. .+..+.+||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~~~--~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 74 RAGIGY-VPEGRRIF--PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred hcCeEE-eccccccC--CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 112444 45544322 23678888766443222 111223344556655 233 46778899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++||+||||++||+..++.+.+++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 97
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.98 E-value=5.4e-32 Score=233.30 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=129.7
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCCC--
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVKP-- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~~-- 148 (254)
+++++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |+ +|+ .++|....
T Consensus 1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~ 73 (247)
T TIGR00972 1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK 73 (247)
T ss_pred CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence 478999999998632 6699999999999999999999999999999999997 88 999 56664321
Q ss_pred --------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366 149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (254)
Q Consensus 149 --------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (254)
...++ +.++.. ++. .++.+++.+.....+. ...........+++.+++. .+.++..||+||
T Consensus 74 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 74 KIDVVELRRRVGM-VFQKPN-PFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred ccchHHHHhheEE-EecCcc-cCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 12444 555433 222 5788887654433332 2222234567788888875 356778999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 98
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.98 E-value=4.3e-32 Score=235.35 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=128.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV 151 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~ 151 (254)
++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++... ....
T Consensus 11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT 83 (257)
T ss_pred CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence 6799999999998633 5699999999999999999999999999999999997 99999 5555321 2334
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
++ +.++...+. .+++.+++.+.. .. .....+.++++.+++. .+..+..||+||+||+++|++++.+|++
T Consensus 84 ~~-v~q~~~l~~--~~tv~enl~~~~-----~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RL-MFQDARLLP--WKKVIDNVGLGL-----KG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EE-EecCccCCC--CCcHHHHHHhcc-----cc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 54 555543222 257777765421 11 1234567788888875 3667889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 230 lIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||||++||+..++.+.++|.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999888753
No 99
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=7.8e-33 Score=231.96 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=134.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CC--
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP-- 149 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~-- 149 (254)
+++++++|+|+||+.. |++||||++++||+++|+||||||||||+++|+|+++ |++|+ .++|+.. ++
T Consensus 3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence 6789999999999976 8899999999999999999999999999999999998 99999 6777532 11
Q ss_pred --CeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-------CCC-----CCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (254)
Q Consensus 150 --~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-------g~~-----~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~ 213 (254)
..|..=.++--.++ +.+|+.||+....... +.+ +....++..++++.+++. .+....+||+|+
T Consensus 76 iar~Gi~RTFQ~~rlF-~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 76 IARLGIARTFQITRLF-PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ 154 (250)
T ss_pred HHhccceeeccccccc-CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence 22322122222222 3489999987653311 111 122345668888888887 466778999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+.||+||+.+|++|+||||.+|+.+....++.++|.+
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~ 194 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988864
No 100
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.4e-32 Score=233.55 Aligned_cols=170 Identities=14% Similarity=0.072 Sum_probs=129.6
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~ 147 (254)
|+++|+++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|+++ | ++|+ .++|...
T Consensus 1 ~~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 1 MKFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNI 73 (253)
T ss_pred CcceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEc
Confidence 356899999999998633 6699999999999999999999999999999999986 5 4899 5666422
Q ss_pred C----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC--CCCccHHHHHHHHHhhccC------CCCCCCCC
Q 025366 148 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSF 209 (254)
Q Consensus 148 ~----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~------~~~~~~~l 209 (254)
. ...++ +.++...+. .+++.+++.+.....+. ........+.++++.+++. .+..+..|
T Consensus 74 ~~~~~~~~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 150 (253)
T PRK14267 74 YSPDVDPIEVRREVGM-VFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNL 150 (253)
T ss_pred cccccChHHHhhceeE-EecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhC
Confidence 1 12343 555543222 26788887654332222 1111223456777777653 35677899
Q ss_pred ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864
No 101
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.98 E-value=8e-32 Score=233.71 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=128.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-----CC-
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-----~~- 148 (254)
++++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|.. ..
T Consensus 5 ~~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 5 PLLSVRGLTKLYGPR--K--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA 77 (258)
T ss_pred ceEEEeeeEEEcCCc--e--eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence 579999999999863 2 5699999999999999999999999999999999997 99999 666643 11
Q ss_pred -----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC---CCCCCCCCChhh
Q 025366 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (254)
Q Consensus 149 -----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (254)
...++ +.++........++..+++.+.....+.. .........++++.+++. .+..+..||+||
T Consensus 78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 78 LSEAERRRLLRTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred CCHHHHHHHhhcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 12444 55554211222245555654322222211 111234556788888875 256788999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+||+++|+|++.+|+|||+||||++||+.+++.+.+++.
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 195 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5.7e-32 Score=237.75 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=133.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|+++||++.|++. .. +++++||++++||+++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 4 ~~l~~~~l~~~~~~~-~~--~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 4 YILKVEELNYNYSDG-TH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL 77 (283)
T ss_pred ceEEEEeEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence 479999999999631 22 6699999999999999999999999999999999997 99999 6676432
Q ss_pred ---CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ---~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....|+ +.++.. .++. .++.+++.+.....+++.......+..+++.+++. .+.++..||+||+||+++|+
T Consensus 78 ~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 78 MKLRESVGM-VFQDPDNQLFS--ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred HHHHhhEEE-EecCcchhhcc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 123454 555532 2222 57888887654444443333335567788888876 46788899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+.+|++||+||||++||+..+..+.+++.+
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~ 186 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988753
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5.8e-32 Score=237.21 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=133.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++++++||++.|++..+. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 4 ~~l~~~~l~~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 4 EIIRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred ceEEEEEEEEEeCCCCcc--ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence 479999999999752222 6799999999999999999999999999999999998 99999 6777432
Q ss_pred -CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....++ +.++.. .+.. .++.+++.+.....+.........+..+++.+++. .+..+..||+||+||+++|+++
T Consensus 79 ~~~~i~~-~~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 79 VRRQVGM-VFQNPDNQFVG--ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred HhhheEE-EEeCHHHhccc--ccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 123454 555531 2222 57888886654444433222234567788877775 4567889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..+..+.++|.+
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998853
No 104
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.7e-32 Score=233.84 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=130.3
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC---
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~--- 147 (254)
.+++++++|+++.|++.. +++|+||++++|++++|+|+||||||||+++|+|+++.. +|++|+ .++|...
T Consensus 9 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred cceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 367899999999998632 569999999999999999999999999999999998510 137999 5666321
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++.. ++. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+
T Consensus 85 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 85 DVDVVELRKNVGM-VFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ 160 (258)
T ss_pred cchHHHHhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence 112344 454433 222 58888887654333332211223456677777652 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|+||+.+|++||+||||++||+.++..+.++|.+
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 199 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 105
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.98 E-value=4.3e-32 Score=251.48 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=147.6
Q ss_pred CcceEEEecceeecccc-------cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC
Q 025366 74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~-------~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~ 145 (254)
..++++++||+|.|... ...+.|++||||++.+||++||+|+||||||||+|+|+|++. |++|+ .++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 35789999999999841 234678999999999999999999999999999999999998 99999 66664
Q ss_pred CC---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC---CCCCCCCCChh
Q 025366 146 VK---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (254)
Q Consensus 146 ~~---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (254)
.. ......++.+|.+.-.++.+++.+.+.......+. .......++.++++.+++. .++++++||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 31 01234568888887777778998888777665543 2233345678889999987 57899999999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||++|||||+.+|++||+|||++.||+..+..+.++|.+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864
No 106
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.98 E-value=1.3e-31 Score=228.05 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=129.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence 4799999999998633 6699999999999999999999999999999999987 99999 5666321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al 223 (254)
....++ +.++.. ++. .++.+++.+.....+. ......+.++++.+++. .+.++..||+||+||+++|+++
T Consensus 79 ~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 79 YRQQVSY-CAQTPT-LFG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred HHhccEE-Eecccc-ccc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 122343 555533 232 3777877653322221 12234567888888884 3678889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+..++.+.++|.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 107
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5.1e-32 Score=237.01 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=130.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
|++++||++.|++. .. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ml~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 1 MIRLENVSYSYPDG-TP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred CEEEEEEEEEcCCC-Cc--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence 47899999999632 22 6699999999999999999999999999999999997 99999 56664221
Q ss_pred --CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 --~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...++ +.++.. .+.. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|+
T Consensus 75 ~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 75 IRKLVGI-VFQNPETQFVG--RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred HHhheEE-EEEChhhhccc--chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 12444 455432 1222 57888876654444433222234567778888775 4677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|+|||+||||++||+.++..+.+++.+
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 181 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKK 181 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998853
No 108
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.98 E-value=7.1e-32 Score=234.13 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=128.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
+++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~ 74 (258)
T PRK13548 2 MLEARNLSVRLGGR--T--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL 74 (258)
T ss_pred eEEEEeEEEEeCCe--e--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence 58999999999863 2 5699999999999999999999999999999999997 99999 5666321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc-
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG- 224 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~- 224 (254)
....++ +.++....+ .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+||+
T Consensus 75 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 75 ARRRAV-LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hhheEE-EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 122343 555433222 257777776533222211112234567788887775 36788899999999999999999
Q ss_pred -----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 -----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 -----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+..++.+.++|.+
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 59999999999999999999999998853
No 109
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=5e-32 Score=235.74 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=141.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQV------- 146 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~------- 146 (254)
+++++||+..|......+.|++||||++++||++||+|.|||||||+.+.|+|+++. ..-.+|+ .|+|+.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 378999999998754456789999999999999999999999999999999999941 1124577 577741
Q ss_pred ----CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-C-CCCccHHHHHHHHHhhccC-----CCCCCCCCChhhhh
Q 025366 147 ----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD 215 (254)
Q Consensus 147 ----~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~q 215 (254)
.+.....+|.|+...-.++.+++.+.+........ . .......+..++++.+++. .+.|+.+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 13334445888877666666677666655554332 2 2334566788999999987 36899999999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||.||.|++.+|++||.||||++||...+.+|.++|++
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~ 198 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.98 E-value=1.1e-31 Score=230.64 Aligned_cols=168 Identities=15% Similarity=0.194 Sum_probs=129.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~~i~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 1 PILYLEGLSVSFDGF--K--ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred CeEEEEeeEEEcCCe--E--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence 368999999999863 2 6699999999999999999999999999999999997 99999 66664221
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-C-------CCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g-------~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~q 215 (254)
...++ +.++...+. .+++.+++.+..... . .........+.++++.+++.. +..+..||+||+|
T Consensus 74 ~~~~~i~~-~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q 150 (242)
T TIGR03411 74 IARAGIGR-KFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ 150 (242)
T ss_pred HHhcCeeE-eccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 12343 444433222 268888776543211 0 011112345677888887763 5678899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus 151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 111
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.98 E-value=9.5e-32 Score=234.18 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=131.3
Q ss_pred eEEEecceeeccccc-----ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---
Q 025366 77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~-----~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--- 147 (254)
+++++||++.|++.. ....+++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence 589999999996310 01226799999999999999999999999999999999997 99999 6666321
Q ss_pred --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhh
Q 025366 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (254)
....++ +.++......+.+++.+++.+..... ++........+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q 157 (265)
T TIGR02769 79 DRKQRRAFRRDVQL-VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ 157 (265)
T ss_pred CHHHHHHHhhceEE-EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 113454 55554211222367777765543322 222223345677888888874 36678899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 195 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988854
No 112
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.98 E-value=9.7e-32 Score=224.36 Aligned_cols=162 Identities=16% Similarity=0.115 Sum_probs=126.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (254)
++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR 73 (198)
T ss_pred CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence 46889999998733 6699999999999999999999999999999999997 99999 5666421 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++ +.++... + +.+++.+++.+.....+ .....+.++++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 74 NILY-LGHLPGL-K-PELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred heEE-eccCccc-c-cCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 2343 4443222 2 22678888766443322 1133567778877775 45678899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+..++.+.+++.+
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~ 172 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRA 172 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 113
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.6e-32 Score=236.70 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=129.1
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC---------
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------- 148 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------- 148 (254)
.++++++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~ 98 (269)
T cd03294 26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE 98 (269)
T ss_pred hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence 5679999998743 5699999999999999999999999999999999997 99999 66663211
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...++ +.++...++ .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|+
T Consensus 99 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 99 LRRKKISM-VFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhcCcEEE-EecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 12444 555433222 268888877654333332222234567788888875 4677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++|||||||++||+..++.+.++|.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~ 205 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLR 205 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 114
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.98 E-value=9.4e-32 Score=234.49 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=129.1
Q ss_pred ceEEEecceeeccccc-----ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-
Q 025366 76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~-----~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~- 148 (254)
++|+++||++.|+... ....+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence 4699999999996310 01236799999999999999999999999999999999997 99999 56663221
Q ss_pred -------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (254)
Q Consensus 149 -------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv 217 (254)
...++ +.++......+.+++.+++.+..... +.........+.++++.+++. .+..+..||+||+||+
T Consensus 80 ~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 158 (267)
T PRK15112 80 GDYSYRSQRIRM-IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL 158 (267)
T ss_pred CchhhHhccEEE-EecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence 12343 55543211122245666655433222 222222234567888888874 3556789999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|++++.+|+||||||||++||+.+++.+.++|.+
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 194 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998864
No 115
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.98 E-value=1e-31 Score=232.94 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=131.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++++++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 76 (257)
T PRK10619 4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD 76 (257)
T ss_pred ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence 4689999999998633 5699999999999999999999999999999999997 99999 5666321
Q ss_pred --------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccCC---CCCCCCC
Q 025366 148 --------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF 209 (254)
Q Consensus 148 --------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~l 209 (254)
....++ +.++...+. .+++.+++.+... ..+.........+.++++.+++.. +.++..|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~-v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 77 GQLKVADKNQLRLLRTRLTM-VFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred cccccccchHHHHHhhceEE-EecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 112344 555543222 2678888765332 222222223445678888888853 5677899
Q ss_pred ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+||+++|+||+.+|++||+||||++||+.+++.+.+++.+
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 116
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.98 E-value=1.7e-31 Score=226.88 Aligned_cols=171 Identities=19% Similarity=0.187 Sum_probs=129.3
Q ss_pred eEEEecceeecccc---cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC--CC--CC-
Q 025366 77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--VK- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~---~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~--~~--~~- 147 (254)
|++++||++.|+.. .....+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++ |. ..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence 47899999999631 011226799999999999999999999999999999999997 99999 565 32 11
Q ss_pred -----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChhh
Q 025366 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (254)
Q Consensus 148 -----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~ 213 (254)
....++ +.++.... ..+++.+++.+.....+...........++++.+++.. +.++.+||+||
T Consensus 78 ~~~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 78 QASPREVLEVRRKTIGY-VSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE 154 (224)
T ss_pred hcCHHHHHHHHhcceEE-EecccccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence 012344 55554322 23677777765433334322222345677888888753 46788999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 117
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=2.3e-31 Score=224.74 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=129.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----C
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----P 149 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----~ 149 (254)
++++++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|.... .
T Consensus 10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence 5799999999998633 5699999999999999999999999999999999997 99999 66664321 1
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++ +.++... + ..+++.+++.+.....+. .......++++.+++. .+..+..||+||+||+++|++++.+|
T Consensus 83 ~i~~-~~q~~~~-~-~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 83 FMAY-LGHLPGL-K-ADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ceEE-eecCccc-c-cCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2343 4444322 2 225788877664432221 1234456777777765 46777899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+..++.+.+++.+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISA 182 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998853
No 118
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.5e-32 Score=235.99 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=132.0
Q ss_pred ceEEEecceeecccccc--eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~--~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
++++++||++.|++... ...+++++||+|++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence 57999999999974210 1126799999999999999999999999999999999997 99999 6666332
Q ss_pred ----CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 ----~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
....++ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|
T Consensus 80 ~~~~~~~i~~-v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 80 LWDIRNKAGM-VFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred HHHHhhheEE-EecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 112344 555432 2221 36677776544444433222344567788888775 4677899999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++++.+|++||+||||++||+..+..+.++|.+
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 189 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998864
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.98 E-value=7.8e-32 Score=229.80 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=124.1
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
|+++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (230)
T TIGR03410 1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA 73 (230)
T ss_pred CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence 46899999998632 6699999999999999999999999999999999997 99999 5666321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc-c--CCCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-N--QGSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l--~~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....++ +.++...+ +.+++.+++.+.....+.. .......+++.++ + ..+.++..||+||+||+++|++++
T Consensus 74 ~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 74 RAGIAY-VPQGREIF--PRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred HhCeEE-eccCCccc--CCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 112343 55554322 2357888776543332211 1222344555543 2 356778899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++||+||||++||+.+++.+.++|.+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998854
No 120
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=9.2e-32 Score=236.77 Aligned_cols=171 Identities=11% Similarity=0.065 Sum_probs=132.6
Q ss_pred eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
.++++||++.|++... ...+|+|+||+|++|++++|+|+||||||||+++|+|++. |+.|+ .++|...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3889999999974211 1126799999999999999999999999999999999998 99999 6676422
Q ss_pred -----CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366 148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 148 -----~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ 218 (254)
....|+ +.++.. .++. .++.+++.+.....++........+.++++.+++. .+..+..||+||+||++
T Consensus 79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 79 YIRPVRKRIGM-VFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred hHHHHHhheEE-EecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 113454 555531 2222 37788887654444443323345567888888885 24678899999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|+.+|++||+||||++||+..+..+.+++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 190 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998863
No 121
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=231.76 Aligned_cols=171 Identities=12% Similarity=0.102 Sum_probs=128.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~----- 147 (254)
++++++|+++.|++.. +|+++||++++|++++|+||||||||||+++|+|+++. .+|++|+ .++|...
T Consensus 3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 4689999999998633 67999999999999999999999999999999999851 0126999 5666321
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++...+. .+++.+++.+.....+. ........+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 79 DPVAVRRTIGM-VFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred ChHHHhcceEE-EccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 122444 454433222 26888887664433332 1112223456677777652 35677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 122
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-31 Score=230.46 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=129.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
.|+|+++||++.|++. . +++++||++++|++++|+||||||||||+++|+|++... .|++|+ .++|...
T Consensus 4 ~~~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 4 PPKMEARGLSFFYGDF--Q--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CcEEEEeeeEEEECCe--e--eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 3689999999999863 2 669999999999999999999999999999999986311 147899 5666322
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++.. ++. .++.+++.+.....+.. .......+.++++.+++. .+..+..||+||+
T Consensus 80 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 80 VDVVELRRRVGM-VFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ 155 (253)
T ss_pred cCHHHHhhcEEE-EecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 122444 555543 222 37888876654333331 112234566777777763 2566789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 123
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=230.16 Aligned_cols=164 Identities=14% Similarity=0.092 Sum_probs=127.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence 45689999999997632 5699999999999999999999999999999999997 99999 5666321
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++... +. .++.+++.+..... ......+.++++.+++. .+..+..||+||+||+++|+|
T Consensus 74 ~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 74 DLRRKIGM-VFQQPHL-FE--GTVKDNIEYGPMLK----GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred HhhhcEEE-EecCchh-ch--hhHHHHHhcchhhc----CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 122343 5555432 22 36666654322111 12234567788888875 356788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||+||||++||+..++.+.++|.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
No 124
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=230.86 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=129.1
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (254)
.++++++++++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ | ++|+ .++|...
T Consensus 5 ~~~l~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 5 EAIIETENLNLFYTDF--K--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred CceEEEeeeEEEeCCc--e--eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence 4579999999999863 3 5699999999999999999999999999999999996 5 4898 5666321
Q ss_pred ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCCh
Q 025366 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (254)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (254)
....++ +.++...+ . .++.+++.+.....+... ......+.++++.+++. .+..+..||+
T Consensus 78 ~~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 153 (254)
T PRK14273 78 SNNFDILELRRKIGM-VFQTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153 (254)
T ss_pred cccccHHHHhhceEE-Eeeccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence 122444 55554332 2 688888876543333211 11234456667766652 4667889999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 125
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.6e-31 Score=222.16 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=127.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
|++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 478999999998633 5699999999999999999999999999999999997 99999 66764321
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...++ +.++.... +..++.+++.+.... . .....+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 74 ~~i~~-~~q~~~~~--~~~tv~~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 74 KQLCF-VGHRSGIN--PYLTLRENCLYDIHF---S--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred hheEE-eccccccC--cCCCHHHHHHHHHhc---C--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 23343 44443222 226788877653211 1 1224567788877765 3566779999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+.+++.+.++|.+
T Consensus 146 p~~lilDEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 146 AKLWLLDEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 126
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=1.5e-31 Score=223.86 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=125.3
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP 149 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~ 149 (254)
++++||++.|++.. +++++||+|++|+++||+|+||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence 46899999998733 5699999999999999999999999999999999997 99999 5665332 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++ +.++.. ++ ..+++.+++.+... ......+.++++.+++. .+.++..||+||+||+++|++++.+|
T Consensus 74 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 74 GLLY-LGHAPG-IK-TTLSVLENLRFWHA------DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred heEE-eccccc-cC-CCcCHHHHHHhhcc------cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2343 443322 21 12577777654321 11345667788888775 45677899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+..++.+.++|.+
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998853
No 127
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=233.38 Aligned_cols=170 Identities=13% Similarity=0.159 Sum_probs=131.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++++++|+++.|++..+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 6 ~~l~~~nl~~~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 6 VMIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE 80 (271)
T ss_pred eEEEEEeEEEEcCCCCcc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence 579999999999632122 5699999999999999999999999999999999997 99999 5666322
Q ss_pred -CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....++ +.++.. .+. ..++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+||
T Consensus 81 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (271)
T PRK13632 81 IRKKIGI-IFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL 157 (271)
T ss_pred HhcceEE-EEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 122344 555532 222 258888876643333322222233467788888775 4677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++|||||||++||+..++.+.+++.+
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998864
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.97 E-value=1e-31 Score=242.87 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=128.1
Q ss_pred eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------------CCCe
Q 025366 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------PPDV 151 (254)
Q Consensus 85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------------~~~~ 151 (254)
|.|++.. +++|+||+|++||+++|+||||||||||+++|+|+++ |++|+ .++|... ....
T Consensus 1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i 73 (363)
T TIGR01186 1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI 73 (363)
T ss_pred CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence 4566633 6799999999999999999999999999999999998 99999 6777422 1245
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
++ +.++...++ .+++.+|+.+.....+.........+.++++.+++. .+.++.+|||||+||+++||||+.+|+|
T Consensus 74 ~~-v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 74 GM-VFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EE-EECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 55 555433332 268999998876655554333456678888888886 4678889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhh
Q 025366 230 VIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 230 lIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||||||++||+..++.+.+++.
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~ 173 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELK 173 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999875
No 129
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=2.4e-31 Score=229.95 Aligned_cols=170 Identities=14% Similarity=0.155 Sum_probs=126.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-----CC-
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-----~~- 148 (254)
++++++||++.|++.. +++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ 74 (253)
T ss_pred ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence 4699999999998633 5699999999999999999999999999999999998 99999 566532 10
Q ss_pred -----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC---CCCCCCCCChhh
Q 025366 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (254)
Q Consensus 149 -----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (254)
...++ +.++........+++.+++.+....... ........+.++++.+++. .+..+..||+||
T Consensus 75 ~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 75 LSEAERRRLMRTEWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred CCHHHHHHhhhcceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence 12343 5555422112223455555432211221 1112234567788888874 356778999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|+||+.+|++||+||||++||+.+++.+.+++.+
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~ 193 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 193 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 130
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-31 Score=237.18 Aligned_cols=172 Identities=15% Similarity=0.089 Sum_probs=132.4
Q ss_pred cceEEEecceeeccccc-ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~-~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
-++|+++||++.|+... ....+|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccccc
Confidence 36899999999997521 11226799999999999999999999999999999999998 99999 5665211
Q ss_pred -------------------CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCC
Q 025366 148 -------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV 204 (254)
Q Consensus 148 -------------------~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~ 204 (254)
....+. +.++. ..++. .++.+++.+.....+.........+.++++.+++. .+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSM-VFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccccchHHHHHhcEEE-EEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 122454 55553 22332 37788876644333332222334567788888885 466
Q ss_pred CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.+..||+||+||++||+||+.+|++|||||||++||+.++..+.++|.
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~ 220 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLIL 220 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999885
No 131
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-31 Score=229.45 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=128.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
|++|+++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++.. .|++|+ .++|...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 45799999999998633 669999999999999999999999999999999998510 027899 5666321
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++... +. .++.+++.+.....+.. .......+.+.++.+++. .+..+..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 77 LDVTEYRKKVGM-VFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred hhHHHhhhhEEE-EecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence 122443 5554432 22 57788876544333321 111223456667776663 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|+|++.+|++||+||||++||+.++..+.++|.+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE 191 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 132
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-31 Score=231.32 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=128.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
+++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (255)
T PRK11231 2 TLRTENLTVGYGTK--R--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL 74 (255)
T ss_pred EEEEEeEEEEECCE--E--EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence 58999999999863 3 5699999999999999999999999999999999997 99999 5666321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH----HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~----~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +.++.... ..+++.+++.+... .++.........+..+++.+++. .+..+..||+||+||+++|+
T Consensus 75 ~~~i~~-~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 75 ARRLAL-LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred hhheEE-ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 112444 55554322 22577777654311 11111122234566777777775 46778899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++.+|++||+||||++||+.+++.+.+++.+
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998853
No 133
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=231.07 Aligned_cols=171 Identities=15% Similarity=0.113 Sum_probs=129.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
+++|+++||++.|++. . +++|+||+|++|++++|+|+||||||||+++|+|+++.. .|++|+ .++|...
T Consensus 17 ~~~l~~~nl~~~~~~~--~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--Q--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CceEEEEeEEEEECCE--E--EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4589999999999863 3 569999999999999999999999999999999998500 138999 6666322
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC--CCccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (254)
....++ +.++.. ++. .++.+++.+.....+.. .......+..+++.+++. .+..+..||+||
T Consensus 93 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 93 LDVVELRARVGM-VFQKPN-PFP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred cchHHHhhceEE-EecCCC-CCC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 122344 455433 222 37788876544333321 111234456778877774 245678999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++|+.+|++|||||||++||+..++.+.++|.+
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 134
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=2.7e-31 Score=231.70 Aligned_cols=173 Identities=17% Similarity=0.135 Sum_probs=129.7
Q ss_pred cceEEEecceeecccc-------cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~-------~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~ 146 (254)
|++|+++||++.|++. .+. +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|..
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~ 75 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQT--VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEP 75 (268)
T ss_pred CceEEEeceEEEecCCccccccCcee--eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence 5689999999999731 122 5699999999999999999999999999999999997 99999 666642
Q ss_pred C-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366 147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (254)
Q Consensus 147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~ 211 (254)
. ....++ +.++.........++.+++.+.... .+.........+.++++.+++. .+..+..||+
T Consensus 76 ~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 154 (268)
T PRK10419 76 LAKLNRAQRKAFRRDIQM-VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG 154 (268)
T ss_pred ccccChhHHHHHHhcEEE-EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence 2 123444 5555421111225666665432221 1221222234567888888875 3567889999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 196 (268)
T PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK 196 (268)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988853
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=1.7e-31 Score=230.85 Aligned_cols=166 Identities=15% Similarity=0.132 Sum_probs=127.1
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~ 73 (252)
T TIGR03005 1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP 73 (252)
T ss_pred CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence 46899999998633 6699999999999999999999999999999999997 99999 5666322
Q ss_pred ------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChh
Q 025366 148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG 212 (254)
Q Consensus 148 ------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G 212 (254)
....++ +.++...+. ..++.+++.+... ..+.........+.++++.+++. .+..+..||+|
T Consensus 74 ~~~~~~~~~~~~~~~i~~-v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 74 LVPADEKHLRQMRNKIGM-VFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred ccccchhHHHHHhhCeEE-EecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 112343 455433222 2578887765322 12222222234567778887775 35667899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR 191 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988853
No 136
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-31 Score=224.75 Aligned_cols=164 Identities=14% Similarity=0.106 Sum_probs=125.6
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
++++|+++.|++.. .++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ...
T Consensus 1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence 46889999997621 39999999999999999999999999999999997 99999 6666322 112
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+. .+++.+++.+...............+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 72 i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 72 VSM-LFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred EEE-EecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 454 555544322 257777775432211011112334567788888775 456778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+||||++||+..++.+.+++.+
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998853
No 137
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-31 Score=233.30 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=129.3
Q ss_pred EEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
++++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNKD 79 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccC
Confidence 789999999975210 0126799999999999999999999999999999999997 99999 56663211
Q ss_pred -----CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhh
Q 025366 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 149 -----~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~i 219 (254)
...++ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++
T Consensus 80 ~~~~~~~i~~-~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 156 (280)
T PRK13649 80 IKQIRKKVGL-VFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI 156 (280)
T ss_pred HHHHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 12344 555531 2222 47888876544333332212233456777887775 366788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (280)
T PRK13649 157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753
No 138
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.9e-31 Score=228.42 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=129.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (254)
-++++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|+.+ | ++|+ .++|...
T Consensus 2 ~~~l~~~~l~~~~~~~--~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 2 KIKMESKNLNLWYGEK--Q--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred ccEEEEEEeEEEECCe--e--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence 3689999999999863 2 6699999999999999999999999999999999985 4 7899 6666432
Q ss_pred ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCCh
Q 025366 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (254)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (254)
....++ +.++...+ . .++.+++.+.....+.. .......+.++++.+++. .+..+..||+
T Consensus 75 ~~~~~~~~~~~~i~~-~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGM-VFQKPNPF-P--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEE-EecCCCcC-C--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 112444 55554332 2 57888887654333331 112223456677777653 3567789999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+++|++++.+|+|||+||||++||+.++..+.+++.+
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~ 192 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE 192 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 139
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=3.6e-31 Score=223.35 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=125.9
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
++++||++.|+. .+.++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ...
T Consensus 1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 368999999974 3479999999999999999999999999999999997 99999 6666422 122
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+. .+++.+++.+...............+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 72 i~~-v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 72 VSM-LFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred eEE-EeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 443 555533222 257888876532211111112234567788888775 356778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+||||++||+.+++.+.++|.+
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 140
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-31 Score=232.72 Aligned_cols=168 Identities=16% Similarity=0.147 Sum_probs=130.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
+++++||++.|++. .. +++++||++++||+++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 1 ILETRDLKYSYPDG-TE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred CEEEEEEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence 47899999999742 22 5699999999999999999999999999999999997 99999 6666432
Q ss_pred --CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 --~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+.++.+||+||+||+++|++
T Consensus 75 ~~~~~i~~-v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara 151 (275)
T PRK13639 75 EVRKTVGI-VFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI 151 (275)
T ss_pred HHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 112344 566532 2222 47888876543333322222234567788888875 467788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||+||||++||+.++..+.+++.+
T Consensus 152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 182 (275)
T PRK13639 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYD 182 (275)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 141
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-31 Score=229.57 Aligned_cols=171 Identities=14% Similarity=0.082 Sum_probs=129.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
.++++++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++.. .|++|+ .++|...
T Consensus 18 ~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 18 EIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 45799999999997633 669999999999999999999999999999999998410 147999 5666322
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++...+ . .++.+++.+.....+.. .......+.++++.+++. .+..+..||+||+
T Consensus 94 ~~~~~~~~~i~~-v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 94 INVYEMRKHIGM-VFQRPNPF-A--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred CChHHHhcceEE-EecCCccc-c--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 112344 55554332 2 47888887644333331 112234456677777663 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++|||||||++||+..+..+.+++.+
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 208 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 142
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=6.3e-31 Score=227.63 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=126.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCce-ecCCCCC----
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK---- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p----~~G~-~~~~~~~---- 147 (254)
+++++||++.| +. . +++++||++++|++++|+|+||||||||+++|+|+++ | ++|+ .++|...
T Consensus 4 ~l~~~~l~~~~-~~--~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 4 QIELRNIALQA-AQ--P--LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEEeCeEEEe-cc--c--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence 68999999999 32 2 5699999999999999999999999999999999997 7 8999 5666432
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-----CCCCCCCChhhhhhHhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~G~~qrv~ia 220 (254)
....++ +.++....+.+..++.++..+.....+.. .....+.++++.+++.. +..+..||+||+||+++|
T Consensus 76 ~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 76 LRGRKIAT-IMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred cccceEEE-EecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 122443 55554211222245555544332233322 22356778888888764 567889999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++.+|++|||||||++||+.+++.+.+++.+
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 185 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLES 185 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-31 Score=231.59 Aligned_cols=168 Identities=18% Similarity=0.117 Sum_probs=128.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 10 ~~l~i~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 10 TTFALRNVSFRVPGR--T--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred ceEEEeeEEEEECCE--E--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence 579999999999763 2 6699999999999999999999999999999999997 99999 5666321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cC---CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
....++ +.++...++ .+++.+++.+.... .+ .........+.++++.+++. .+.++..||+||+||+++|
T Consensus 83 ~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 83 FARKVAY-LPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HhhheEE-eccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 123444 454432222 25777776542211 11 11112234567788887775 4667889999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++++.+|+||||||||++||+.+++.+.++|.+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998854
No 144
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.97 E-value=3.1e-31 Score=240.88 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=128.0
Q ss_pred cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC-----CC--------
Q 025366 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VK-------- 147 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~-----~~-------- 147 (254)
++.+.|+.. .+++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|+ ..
T Consensus 29 ~~~~~~g~~----~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~ 101 (382)
T TIGR03415 29 EILDETGLV----VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR 101 (382)
T ss_pred HHHHhhCCE----EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence 344555543 37799999999999999999999999999999999998 99999 67763 11
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....+. +.++...++ .+++.+|+.+.....+...........++++.+++. .+.++.+||+||+||+++|+|
T Consensus 102 ~~r~~~i~~-vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA 178 (382)
T TIGR03415 102 RLRTHRVSM-VFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA 178 (382)
T ss_pred HHhcCCEEE-EECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 023454 555543332 268899988765555544333445678889988886 467888999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|+|||+||||++||+..+.++.++|.+
T Consensus 179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 179 FAMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998753
No 145
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=229.36 Aligned_cols=171 Identities=12% Similarity=0.074 Sum_probs=129.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~---- 147 (254)
..+++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|++. ...|++|+ .++|...
T Consensus 11 ~~~l~~~~l~~~~~~~--~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF--H--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred CceEEEEEEEEEeCCe--E--EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4679999999999863 2 5699999999999999999999999999999999984 11147899 5666321
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++.. ++. .++.+++.+..... +.........+.++++.+++. .+..+..||+||+
T Consensus 87 ~~~~~~~~~i~~-~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 87 QDIALLRAKVGM-VFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred cchHHHhcceEE-EecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence 122444 555433 222 57778776543322 222222234566778877763 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 146
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=229.29 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=127.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ 76 (255)
T ss_pred ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence 3699999999998632 6699999999999999999999999999999999997 99999 66664221
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-------CCCC------C--ccHHHHHHHHHhhccC--CCCCCCC
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAPW------T--FNPLLLLNCLKNLRNQ--GSVYAPS 208 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-------g~~~------~--~~~~~~~~~l~~l~l~--~~~~~~~ 208 (254)
...++ +.++...+ +.+++.+++.+..... +... . .....+.++++.+++. .+.++..
T Consensus 77 ~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (255)
T PRK11300 77 IARMGVVR-TFQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN 153 (255)
T ss_pred HHhcCeEE-eccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence 11232 44443322 2368888876542210 1100 0 1123456677777775 4677889
Q ss_pred CChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 209 lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+||+++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998853
No 147
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.2e-31 Score=230.60 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=130.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
.++++++|+++.|++.. ..+++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 5 ~~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence 35799999999997522 125699999999999999999999999999999999997 99999 66664321
Q ss_pred ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++.. .++. .++.++..+.....+.........+..+++.+++. .+..+..||+||+||+++|+|
T Consensus 80 ~~~~~i~~-v~q~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 156 (269)
T PRK13648 80 KLRKHIGI-VFQNPDNQFVG--SIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV 156 (269)
T ss_pred HHHhheeE-EEeChHHhccc--ccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 12444 555532 2221 45566665543333332222234566778888775 456788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||+||||++||+..++.+.+++.+
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998853
No 148
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.4e-31 Score=255.54 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=136.0
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
.+++|+++||++.|+.......+++|+||++++|+++||+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence 46789999999999642112236799999999999999999999999999999999997 89998 4444200
Q ss_pred -----------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC-----CCC
Q 025366 148 -----------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSV 204 (254)
Q Consensus 148 -----------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~-----~~~ 204 (254)
...+|. +.++......+.+++.+++.+..... ++.......++.++++.+++. .+.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 164 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR 164 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence 123555 55553111122368889887755432 433222345677889999884 367
Q ss_pred CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|||||+|||+||+||+.+|+|||+||||++||+..++++.+++++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV 213 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998864
No 149
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.9e-31 Score=228.37 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=128.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~---- 147 (254)
.++++++|+++.|++.. +++++||+|++|++++|+|+||||||||+++|+|+++ ..++++|+ .++|...
T Consensus 10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 46899999999998632 6699999999999999999999999999999999984 00126899 5666422
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++...+ . .++.+++.+.....+... ......+.++++.+++. .+..+..||+||+
T Consensus 86 ~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 86 VDLVELRKNIGM-VFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred cCHHHHhhceEE-EecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 122444 55554332 2 377888765443333211 11223456677777663 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 200 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 150
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=4.9e-31 Score=228.03 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=122.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++. ...++
T Consensus 3 ~~l~~~~l~~~~~~~--~--vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~- 71 (251)
T PRK09544 3 SLVSLENVSVSFGQR--R--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGY- 71 (251)
T ss_pred cEEEEeceEEEECCc--e--EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEE-
Confidence 579999999999863 3 5699999999999999999999999999999999997 99999 45542 23454
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl 232 (254)
+.++......-..++.++.. +........+..+++.+++. .+.++..||+||+||+++|++++.+|++||+
T Consensus 72 v~q~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLR-------LRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred eccccccccccChhHHHHHh-------ccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55543221110012222211 11112234567788888775 3567889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhh
Q 025366 233 DGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 233 DEp~~~lD~~~~~~l~~ll~ 252 (254)
||||++||+.+++.+.++|.
T Consensus 145 DEPt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLID 164 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999998875
No 151
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=227.78 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=127.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCce-ecCCCCC----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK---- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p---~~G~-~~~~~~~---- 147 (254)
++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+.. ..| ++|+ .++|...
T Consensus 4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND-LNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc-cCCCCCccceEEECCEECcCcc
Confidence 4799999999998632 5699999999999999999999999999999999842 015 4899 5666321
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++... +. .++.+++.+.....+... ......+.++++.+++. .+..+..||+||+
T Consensus 79 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 79 TDTVDLRKEIGM-VFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred cchHhhhhcEEE-EecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 122444 5555432 22 578888876543333321 11234456677777653 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 152
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.2e-31 Score=228.09 Aligned_cols=167 Identities=15% Similarity=0.113 Sum_probs=125.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence 46899999999998633 6699999999999999999999999999999999997 99999 6666422
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhh-ccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +.++...+. .+++.+++....... ........+..+++.+ ++. .+.++..||+||+||+++|+
T Consensus 76 ~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 76 KIMREAVAI-VPEGRRVFS--RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHhCEEE-eccCcccCC--CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 112343 454433222 257777775532111 1111122344455554 232 35677899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++.+|++||+||||++||+..++.+.+++.+
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 182 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998753
No 153
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=2.6e-31 Score=220.29 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=117.7
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----------CCCeEEEeeCCCC-CCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------PPDVATVLPMDGF-HLY 163 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----------~~~~g~~i~~~~~-~~~ 163 (254)
+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ....++ +.++.. .++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~ 82 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGL-VFQDPDDQLF 82 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEE-EecChhhccc
Confidence 6699999999999999999999999999999999997 99999 5666321 112344 555532 222
Q ss_pred CcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 164 ~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
. .++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|++.+|++||+||||++||+
T Consensus 83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 2 47888876643333332222234567778877775 4667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 025366 242 GVWKDVSSMFDE 253 (254)
Q Consensus 242 ~~~~~l~~ll~~ 253 (254)
..++.+.++|.+
T Consensus 161 ~~~~~~~~~l~~ 172 (190)
T TIGR01166 161 AGREQMLAILRR 172 (190)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 154
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.1e-31 Score=232.92 Aligned_cols=172 Identities=12% Similarity=0.036 Sum_probs=129.2
Q ss_pred ceEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
..|+++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~ 81 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK 81 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence 46899999999976321 1125699999999999999999999999999999999997 99999 5665321
Q ss_pred -------CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhh
Q 025366 148 -------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 216 (254)
Q Consensus 148 -------~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qr 216 (254)
....++ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+.++..||+||+||
T Consensus 82 ~~~~~~~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 82 IKEVKRLRKEIGL-VFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cccHHHHhccEEE-EEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 112344 555532 2222 47777776543333322111223456777877773 366788999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|+|++.+|++|||||||++||+.+++.+.++|.+
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 195 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER 195 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988753
No 155
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.7e-31 Score=226.47 Aligned_cols=170 Identities=17% Similarity=0.118 Sum_probs=127.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCCC----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVKP---- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~~---- 148 (254)
++++++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+.....| ++|+ .++|....
T Consensus 2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14245 2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77 (250)
T ss_pred cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence 5799999999998732 56999999999999999999999999999999997310113 5899 66664321
Q ss_pred ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
...++ +.++...+ . .++.+++.+.....+... ......+.++++.+++. .+..+..||+||+|
T Consensus 78 ~~~~~~~~i~~-v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 78 QVDELRKNVGM-VFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred cHHHHhhheEE-EecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 12444 55554322 2 377888765443333221 12234566778877763 24567799999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 156
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=5.7e-31 Score=223.52 Aligned_cols=162 Identities=20% Similarity=0.222 Sum_probs=127.4
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC----CCeE
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDVA 152 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----~~~g 152 (254)
++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++.... ...+
T Consensus 1 l~l~~v~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQ--T--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG 73 (223)
T ss_pred CEEEeEEEEECCE--E--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence 4689999999863 2 5699999999999999999999999999999999997 99999 56664221 1234
Q ss_pred EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
+ +.++...+. .+++.+++.+.....+. ....+.++++.+++. .+..+..||+||+||+++|++++.+|++|
T Consensus 74 ~-~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 74 S-LIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred E-EcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3 444433222 25788887654433331 235667788888776 35667899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||||++||+.+++.+.+++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~ 169 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRS 169 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999998854
No 157
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=3.1e-31 Score=227.22 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=116.5
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CCCeEEEeeCCCCCCCCcCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQL 167 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~l 167 (254)
+|+++||++++|++++|+|+||||||||+++|+|+++ |++|+ .+++... ....++ +..+...++ ..+
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~-~~~ 110 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGV-VFGQKTQLW-WDL 110 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEE-EcCCccccC-CCC
Confidence 6799999999999999999999999999999999997 99999 5665321 112343 332221222 226
Q ss_pred ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHH
Q 025366 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (254)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~ 245 (254)
++.+++.+.....+.........+..+++.+++. .+.++..||+||+||+++|++++.+|++||+||||++||+..++
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 7878776654433432222234456677777765 36677899999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 025366 246 DVSSMFDE 253 (254)
Q Consensus 246 ~l~~ll~~ 253 (254)
.+.++|.+
T Consensus 191 ~l~~~l~~ 198 (236)
T cd03267 191 NIRNFLKE 198 (236)
T ss_pred HHHHHHHH
Confidence 99998864
No 158
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.2e-31 Score=226.47 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=126.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (254)
|++++++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .++|...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~ 73 (249)
T PRK14253 1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY 73 (249)
T ss_pred CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence 46799999999998632 6699999999999999999999999999999999985 5 5898 5665321
Q ss_pred --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (254)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (254)
....++ +.++.. ++. .++.+++.+.....+.. +......+.+.++.+++. .+..+..||+|
T Consensus 74 ~~~~~~~~~~~i~~-~~q~~~-~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 74 GNIDVADLRIKVGM-VFQKPN-PFP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG 149 (249)
T ss_pred cccchHHHHhheeE-EecCCC-cCc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence 112344 555433 222 47778776543333321 111223445566666542 34567899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|++++.+|+|||+||||++||+.++..+.+++.+
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 190 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 159
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.6e-31 Score=225.46 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=126.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------~ 149 (254)
+++++||++.|++. ..++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|.... .
T Consensus 1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 47899999999752 148999999999999999999999999999999997 99999 66664321 2
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
..++ +.++...+. .+++.+++.+.... .. ........+.++++.+++. .+..+..||+||+||+++|++++.+
T Consensus 72 ~i~~-~~q~~~~~~--~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 147 (232)
T PRK10771 72 PVSM-LFQENNLFS--HLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE 147 (232)
T ss_pred cEEE-Eeccccccc--CCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 2444 455433222 25777776543211 11 1112334567788888775 4677889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+.+++.+.+++.+
T Consensus 148 p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 148 QPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998853
No 160
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=4.6e-31 Score=229.40 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=128.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCCC---
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVKP--- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~~--- 148 (254)
++|+++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |+ +|+ .++|....
T Consensus 3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence 5799999999998633 5699999999999999999999999999999999996 65 488 56664221
Q ss_pred ----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--------cCCCCCccHHHHHHHHHhhccC--CCCCCCC
Q 025366 149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS 208 (254)
Q Consensus 149 ----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~ 208 (254)
...++ +.++...++ .+++.+++.+.... .+.........+.++++.+++. .+..+..
T Consensus 76 ~~~~~~~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 76 RLARDIRKSRANTGY-IFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred ccchhHHHHHhheEE-Ecccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 12344 555433222 36788877543211 0111112234567788888875 4677889
Q ss_pred CChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 209 lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+||+++|+|++.+|+|||+||||++||+..++.+.++|.+
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 197 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998864
No 161
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.3e-31 Score=226.18 Aligned_cols=171 Identities=14% Similarity=0.126 Sum_probs=127.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~---- 147 (254)
|..++++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|+++. ..|++|+ .++|...
T Consensus 1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34689999999998633 66999999999999999999999999999999998741 0126899 6666422
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++.. ++. .++.+++.+.....+.. .......+.++++.+++. .+.++..||+||+
T Consensus 77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 77 IDVNQLRKRVGM-VFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred cchHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 112344 455432 222 57888887654433331 111234456666666552 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 191 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE 191 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998854
No 162
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=5e-31 Score=226.40 Aligned_cols=166 Identities=19% Similarity=0.083 Sum_probs=123.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~------ 148 (254)
|+++||++.|++.. +++|+||++++|++++|+||||||||||+++|+|++ + |++|+ .++|....
T Consensus 1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR01978 1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE 73 (243)
T ss_pred CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence 46899999998632 569999999999999999999999999999999994 4 89999 56664211
Q ss_pred -CC--eEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-C------CCCccHHHHHHHHHhhccC---CCCCCC-CCChhhh
Q 025366 149 -PD--VATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 214 (254)
Q Consensus 149 -~~--~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~------~~~~~~~~~~~~l~~l~l~---~~~~~~-~lS~G~~ 214 (254)
.. .++ +.++...+ +.+++.+++.+...... . ........+.++++.+++. .+..+. .||+||+
T Consensus 74 ~~~~~i~~-v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 74 RARAGLFL-AFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred hhccceEe-eecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 11 233 44443322 23577777665432211 1 0011124567788888875 244555 4999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=2.4e-31 Score=250.87 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=130.5
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++++++||++.|++.. +++|+||++++|+++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS 75 (501)
T ss_pred ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999999998632 5699999999999999999999999999999999997 99999 5666322
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc---C-CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~---g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
....++ +.++...+. .+++.+++.+..... + .........+.++++.+++. .+.++.+||+||+||+++
T Consensus 76 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 152 (501)
T PRK10762 76 SQEAGIGI-IHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI 152 (501)
T ss_pred HHhCCEEE-EEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 123454 555543222 368888776532211 1 11111224567788888876 356788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+.+|++|||||||++||+..++.+.+++.+
T Consensus 153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988754
No 164
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6e-31 Score=230.59 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=130.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|+++||++.|++.. ...+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 3 ~~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 3 KILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN 78 (277)
T ss_pred ceEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence 3799999999997521 1226799999999999999999999999999999999998 99999 6666432
Q ss_pred -CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 -~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....|+ +.++.. .+.. .++.+++.+.....+.........+..+++.+++. .+..+..||+||+||+++|+++
T Consensus 79 ~~~~i~~-v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 79 LRRKIGM-VFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII 155 (277)
T ss_pred HhcceEE-EEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 122454 555532 2222 57888886543333332211223456777777764 4567789999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++||+||||++||+.+++.+.++|.+
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998853
No 165
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=1.4e-31 Score=215.13 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=128.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCCe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV 151 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~~ 151 (254)
++.+++|.+.|+... -..+++|+.||+++|+||||||||||+++|+|+.. |.+|+ ++.|... +...
T Consensus 1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 367889999998854 56889999999999999999999999999999997 99999 6666432 1111
Q ss_pred -EEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 152 -ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 152 -g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..++.++.. ++.+ +++.+|+..... -+. -...+.+++..++..+++. .++.+.+|||||||||++||+++++.
T Consensus 72 PVSmlFQEnN-LFaH-LtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENN-LFAH-LTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred Chhhhhhccc-cchh-hhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence 233444443 3322 777777644221 111 2345667788899999887 57788999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+|++|||||+.|||.-+.++..++.
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~ 173 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVS 173 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHH
Confidence 9999999999999999999988874
No 166
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.9e-31 Score=229.29 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=127.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~----- 147 (254)
.+++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++. .+|++|+ .++|...
T Consensus 12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 4799999999998633 66999999999999999999999999999999999741 1258999 5666321
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP 216 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qr 216 (254)
....++ +.++.. ++. .++.+++.+.....+.. ........++++.+++. .+.++..||+||+||
T Consensus 88 ~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 88 DPVEVRRRIGM-VFQQPN-PFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred CHHHHhhceEE-EccCCc-cch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 123444 555443 222 37778776544333322 11233455667766552 356778999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 199 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE 199 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 167
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=1.7e-31 Score=227.21 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=125.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (254)
.+.++++++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|..... .
T Consensus 22 ~l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~-----~ 89 (224)
T cd03220 22 KLGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSL-----L 89 (224)
T ss_pred hhhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchh-----h
Confidence 378899999999843 6699999999999999999999999999999999997 99999 566542110 0
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD 233 (254)
. .+..+ .+.+++.+++.+.....+...........++++.+++. .+..+..||+||+||+++|++++.+|++||+|
T Consensus 90 ~-~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 167 (224)
T cd03220 90 G-LGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167 (224)
T ss_pred c-ccccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0 01111 12368888876654433332222233456677777665 35677899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhc
Q 025366 234 GNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 234 Ep~~~lD~~~~~~l~~ll~~ 253 (254)
|||++||+.+++.+.+++.+
T Consensus 168 EP~~gLD~~~~~~~~~~l~~ 187 (224)
T cd03220 168 EVLAVGDAAFQEKCQRRLRE 187 (224)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999999999988854
No 168
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-31 Score=250.36 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=131.1
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~---- 147 (254)
+++++++||++.|++. . +++++||++++|++++|+||||||||||+|+|+|+++ | ++|+ .++|...
T Consensus 3 ~~~l~~~nl~~~~~~~--~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 3 EYLLEMKNITKTFGGV--K--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred CceEEEeeeEEEeCCe--E--eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence 3579999999999863 2 6699999999999999999999999999999999985 5 7999 5666322
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--CC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhH
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv 217 (254)
....++ +.++...+. .+++.+++.+..... +. ........+.++++.+++. .+.++..||+||+||+
T Consensus 76 ~~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 76 IRDTERAGIAI-IHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV 152 (506)
T ss_pred HHHHHHCCeEE-EEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 123454 555543222 368888776543211 11 1112234567888888875 4667889999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+||+.+|++|||||||++||+..+..+.++|.+
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998854
No 169
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9e-31 Score=225.59 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=129.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
+++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|++....|++|+ .++|...
T Consensus 2 ~~~~~~l~~~~~~~--~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~ 77 (246)
T PRK14269 2 IAKTTNLNLFYGKK--Q--ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77 (246)
T ss_pred ceeeeeeEEEECCE--e--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence 47899999999863 2 569999999999999999999999999999999997421268999 6666422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC--CccHHHHHHHHHhhccC------CCCCCCCCChhhhhhHhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qrv~i 219 (254)
....++ +.++... +. .++.+++.+.....+... ......+.++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~i~~-~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 78 RKNVGM-VFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred hhhEEE-EecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 123454 5555433 32 478888765433333211 12234567788888874 345678999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998854
No 170
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-31 Score=230.96 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=131.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---ce-ecCCCCC-----
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVK----- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~---G~-~~~~~~~----- 147 (254)
+|+++|+++.|++.... +++++||++++|++++|+||||||||||+++|+|++. |+. |+ .++|...
T Consensus 5 ~l~i~~l~~~~~~~~~~--~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred eEEEEEEEEEcCCCCcc--ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence 69999999999752222 6799999999999999999999999999999999997 887 78 5666432
Q ss_pred ---CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ---~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....|+ +.++.. .++. .++.+++.+.....+.........+.++++.+++. .+.++..||+||+||+++|+
T Consensus 80 ~~~~~~ig~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 80 WDIREKVGI-VFQNPDNQFVG--ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred HHHHhheEE-EEECHHHhhcc--CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 123454 555532 2222 58888887644444432222234567788888876 46778899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++.+|++||+||||++||+..++.+.++|.+
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 188 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRK 188 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998853
No 171
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=6.4e-31 Score=222.85 Aligned_cols=171 Identities=19% Similarity=0.134 Sum_probs=129.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+++++|+++.|++..+...+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence 37889999999752111226799999999999999999999999999999999997 99999 66664321
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
...++ +.++...+. .+++.+++.+...... .........+.++++.+++. .+..+..||+||+||+++|+
T Consensus 78 ~~~~~~i~~-~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 78 VQLRRNIGY-IFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred HHHHhheEE-EcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 22343 444432222 2578887776443222 11112234567888888876 35677899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++.+|++||+|||+++||+.+++.+.++|.+
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 186 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQK 186 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998854
No 172
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=5.8e-31 Score=209.69 Aligned_cols=170 Identities=19% Similarity=0.174 Sum_probs=141.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|++++++|..+.....+.+|++|+|.|++||-++|+||||||||||+-+++|+.. |++|+ .+.|+..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDA 81 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHH
Confidence 479999999999887777888899999999999999999999999999999999998 99999 5555321
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia 220 (254)
...+|. +++ .|++-. .++..||........|-............++.++++. .-|+.+||||++|||+||
T Consensus 82 rA~~R~~~vGf-VFQ-SF~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 82 RAALRARHVGF-VFQ-SFHLIP-NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHhhccceeE-EEE-eeeccc-cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 234564 333 344322 2889999888777766433344556788999999984 568899999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
||++..|+||+.||||..||...-++|.+++
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl 189 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLL 189 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence 9999999999999999999999999999886
No 173
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=5.1e-31 Score=249.09 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=131.3
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---- 148 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~---- 148 (254)
++++++++||++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP 80 (510)
T ss_pred CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 456899999999998733 5699999999999999999999999999999999997 99999 56663221
Q ss_pred -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
...++ +.++...+. .+++.+++.+... ........+.++++.+++. .+.++..||+||+||+++|+
T Consensus 81 ~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 153 (510)
T PRK15439 81 AKAHQLGIYL-VPQEPLLFP--NLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR 153 (510)
T ss_pred HHHHhCCEEE-EeccCccCC--CCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence 12454 555543222 2677777654211 1112235567788888875 46778899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|+.+|++|||||||++||+..++.+.++|.+
T Consensus 154 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 154 GLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998854
No 174
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=225.72 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=127.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~----- 147 (254)
++++++|+++.|+.. . +++++||++++|++++|+|+||||||||+++|+|+++ ...|++|+ .++|...
T Consensus 3 ~~l~~~~l~~~~~~~--~--~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 3 NIISAKDVHLSYGNY--E--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred ceEEEEeeEEEECCe--e--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 478999999999863 2 6699999999999999999999999999999999984 00137899 5666421
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++... +. .++.+++.+.....+... ......+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 79 DLVELRKEVGM-VFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred hHHHhhccEEE-EecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 112343 4554432 22 578888765443333321 11223456677777662 35677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 175
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.2e-30 Score=217.33 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=123.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC----CCe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDV 151 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----~~~ 151 (254)
+++++|+++.|++ +. +++ +||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|.... ...
T Consensus 1 ~l~~~~l~~~~~~--~~--l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KN--LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred CeEEEEeeEEECC--cE--EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 3789999999975 22 335 999999999999999999999999999999997 99999 66664321 123
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
++ +.+....++ ..++.+++.+.....+ ......++++.+++. .+..+..||+||+||+++|++++.+|++
T Consensus 73 ~~-~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 73 TY-IGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred Ee-ccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 33 443332222 2678888765433221 234556677777765 4567789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhh
Q 025366 230 VIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 230 lIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+|+||||++||+..++.+.+++.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~ 167 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIV 167 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999885
No 176
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.4e-31 Score=223.92 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=129.1
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
|+++++++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |+.|+ .++|... ...
T Consensus 1 l~~~~l~~~~~~~--~--il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (232)
T cd03300 1 IELENVSKFYGGF--V--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP 73 (232)
T ss_pred CEEEeEEEEeCCe--e--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence 4688999999873 2 5699999999999999999999999999999999997 99999 6666422 123
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+. .+++.+++.+.....+.........+..+++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 74 VNT-VFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred eEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 444 555543322 257777776544333322222234566778877776 466778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+||||++||+..++.+.+++.+
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~ 175 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKR 175 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988853
No 177
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=224.88 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=127.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~----- 147 (254)
..++++|+++.|++.. +++|+||+|++|++++|+|+||||||||+++|+|+++ ...|++|+ .++|...
T Consensus 3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 4689999999998632 6699999999999999999999999999999999973 00136899 6666322
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++...+. .+++.+++.+.....+.. .......+.++++.+++. .+..+..||+||+|
T Consensus 79 ~~~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 79 DPVSIRRRVGM-VFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred ChHHhhccEEE-EecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 112343 555543222 257788776543332321 112234456777777763 24567899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+.+++.+.++|++
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 193 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 178
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=231.54 Aligned_cols=171 Identities=16% Similarity=0.219 Sum_probs=142.9
Q ss_pred cceEEEecceeecccccc--------------------eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc
Q 025366 75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI 134 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~--------------------~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~ 134 (254)
+..|+++||.|.||.... .++.++|+||+|++|||..|+|-||||||||+|+|++++.
T Consensus 2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-- 79 (386)
T COG4175 2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-- 79 (386)
T ss_pred CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence 467899999999986421 3557789999999999999999999999999999999998
Q ss_pred CCCCce-ecCCCCC------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC
Q 025366 135 WPQKAS-SFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 201 (254)
Q Consensus 135 ~p~~G~-~~~~~~~------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~ 201 (254)
|++|+ .++|... +.+.. ++++ .|-+.++ .++.+|..|.....|++.....++..+.++.+++.
T Consensus 80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~s-MVFQ-~FaLlPh-rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~ 155 (386)
T COG4175 80 -PTRGEILVDGKDIAKLSAAELRELRRKKIS-MVFQ-SFALLPH-RTVLENVAFGLEVQGVPKAEREERALEALELVGLE 155 (386)
T ss_pred -CCCceEEECCcchhcCCHHHHHHHHhhhhh-hhhh-hhccccc-hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence 99999 6777432 12223 2333 2222222 68999999999999998888888899999999987
Q ss_pred --CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 202 --~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
.+.|+.+|||||+|||.+||||+.+|+||++||||+.|||--+.++.+.+
T Consensus 156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999888887765
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=6.5e-31 Score=227.73 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=127.7
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
|+++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... .
T Consensus 2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 74 (256)
T TIGR03873 2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA 74 (256)
T ss_pred ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence 57899999998733 6699999999999999999999999999999999997 99999 6666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHH-H---cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++..... .+++.+++.+... . ++.........+.++++.+++. .+..+..||+||+||+++|+|
T Consensus 75 ~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 75 RRVAL-VEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hheEE-ecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 12343 444432111 2578887765321 1 1111112334567788887775 366788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|+++|+||||++||+..+..+.++|.+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 180
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=229.43 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=129.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
.++|++++|++.|++. . +++++||+|++|++++|+|+||||||||+++|+|+++.. .|++|+ .++|...
T Consensus 37 ~~~l~i~~l~~~~~~~--~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 37 ETVIEARDLNVFYGDE--Q--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CceEEEEEEEEEECCE--e--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 4679999999999863 2 669999999999999999999999999999999998410 147999 5665321
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++... +. .++.+++.+.....+... .....+.++++.+++. .+.++..||+||+|
T Consensus 113 ~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 113 VDPVALRRRIGM-VFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred cchHhhhccEEE-EecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 112343 5555432 22 377787765443333322 2234567778777763 35678899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++|+.+|+||||||||++||+..++.+.++|.+
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~ 225 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE 225 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 181
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=224.29 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=126.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCC--
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK-- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~-- 147 (254)
++++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |+ .|+ .++|...
T Consensus 3 ~~l~~~~l~~~~~~~--~--il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 3 PKIKIRGVNFFYHKH--Q--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred ceEEEEEEEEEECCe--e--EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence 579999999999863 2 5699999999999999999999999999999999996 76 588 5665321
Q ss_pred --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (254)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (254)
....++ +.++...+ . .++.+++.+.....+... ......+..+++.+++. .+..+..||+|
T Consensus 76 ~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 76 PNLDVVNLRKRVGM-VFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred cccChHHhhceEEE-EecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 122444 55554332 2 377888765443333221 11123345556655542 35678899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 192 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988853
No 182
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.8e-31 Score=229.22 Aligned_cols=169 Identities=13% Similarity=0.163 Sum_probs=128.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
..+|+++||++.|++.. +++++||++.+|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 5 ~~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 5 VARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred ccEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence 35799999999998632 6699999999999999999999999999999999997 99999 6666421
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
....++ +.++...+. ..++.+++.+... ..+. ........+.++++.+++. .+..+..||+||+||+++
T Consensus 78 ~~~~~i~~-v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 78 EVARRIGL-LAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred HHhhheEE-eeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHH
Confidence 123454 555543322 2567666644211 0111 0111233566788877775 467888999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998853
No 183
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.4e-31 Score=224.85 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=119.6
Q ss_pred cceEEEecceeecccccc-----eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCC
Q 025366 75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~-----~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~ 149 (254)
+++++++||+|.|..... .+.|++||||+|++||++||+|+||||||||.|+|.|+++ |++|+
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~--------- 69 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGE--------- 69 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCce---------
Confidence 568999999999975321 3578999999999999999999999999999999999996 66654
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
|.++|.++.. +. .....+++.++++.+++. ..+++++|||||+||++|||||+.+
T Consensus 70 -----i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 70 -----ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred -----EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 4455543211 11 112345678888888876 5789999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|||+++||...+.++.+++.+
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHH
Confidence 999999999999999999999999853
No 184
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=9.4e-31 Score=242.61 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=144.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCce-ecCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVK------ 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~-~p~~G~-~~~~~~~------ 147 (254)
++|+++||++.|......+.+++||||++++||++||+|.|||||||+++.|.|+++.. ...+|+ .++|...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 48999999999987655566889999999999999999999999999999999999621 113688 6776321
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccCC----CCCCCCCChhhhhhH
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV 217 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv 217 (254)
+.....++.|+.....++.+++.+.+.......+ ........+..++++.+++.. +.|+++|||||+||+
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 2233345889888877777777777766665554 234455677889999998862 358999999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.||+||+.+|++||+||||++||+..+.+|.++|++
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~ 199 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD 199 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864
No 185
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=225.56 Aligned_cols=171 Identities=15% Similarity=0.157 Sum_probs=128.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~---- 147 (254)
+++++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++...| ++|+ .++|...
T Consensus 5 ~~~l~~~~l~~~~~~~--~--il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 5 IPAIKVKDLSFYYNTS--K--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred cceEEEEEEEEEECCe--E--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 5689999999999863 2 56999999999999999999999999999999999851001 4898 5665321
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++... +. .++.+++.+.....+. ++........++++.+++. .+..+..||+||+
T Consensus 81 ~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 81 ININRLRRQIGM-VFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ 156 (259)
T ss_pred cchHhhhhheEE-Eeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence 123444 5555432 22 5888887654333321 2222233456677776652 4567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|+|++.+|++|||||||++||+.++..+.++|.+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 195 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS 195 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 186
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=1.1e-30 Score=223.83 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=128.4
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
++++++++.|++. . +++++||++.+|++++|+|+||||||||+++|+|+++ |++|+ .++|... ...
T Consensus 1 i~i~~l~~~~~~~--~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGSF--Q--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK 73 (237)
T ss_pred CEEEEEEEEECCe--e--eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence 4689999999873 3 5699999999999999999999999999999999997 99999 5666322 122
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.++ +.++...+. ..++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+
T Consensus 74 i~~-~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 74 IGF-VFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred EEE-EecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 343 454433222 257788876544333322222334567788887765 356678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+|||+++||+.+++.+.+++.+
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~ 175 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRK 175 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 187
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=223.69 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=124.0
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCC---
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~--- 147 (254)
+++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |+ +|+ .++|...
T Consensus 4 ~l~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 4 LLSAQDVNIYYGDK--Q--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEeeeEEEECCE--E--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence 68999999999863 2 5699999999999999999999999999999999985 53 798 5666321
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhcc------CCCCCCCCCChhh
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV 213 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l------~~~~~~~~lS~G~ 213 (254)
....++ +.++...+. .+++.+++.+.....+.... .......+.++.+++ ..+..+..||+||
T Consensus 77 ~~~~~~~~~~i~~-~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 77 RVDPVAMRRRVGM-VFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred ccCHHHhhceeEE-EeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 112443 555543322 25788887654332222111 112233444444443 1356788999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD 193 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 188
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=225.55 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=124.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
.++|+++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|++... .|++|+ .++|...
T Consensus 8 ~~~l~i~~v~~~~~~~--~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 8 ETVLRTENLNVYYGSF--L--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred ceEEEEeeeEEEECCE--E--EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 3579999999999863 2 569999999999999999999999999999999997410 137899 5666322
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++.. ++. .++.+++.+.....+.. .........+++.+++. .+..+..||+||+|
T Consensus 84 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGM-VFQKPN-PFP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEE-EccCCc-ccc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence 112444 455433 222 36777776543322221 11123344555555542 35677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|++||+||||++||+..++.+.+++.+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 196 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 189
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.3e-31 Score=248.04 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=129.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++.|++.. +++|+||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL 76 (510)
T ss_pred ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence 5799999999998633 5699999999999999999999999999999999997 99999 56663221
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHH----HcCCC---CCccHHHHHHHHHhhccC--CCCCCCCCChhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~----~~g~~---~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr 216 (254)
...++ +.++...+. .+++.+++.+... .++.. .......+.++++.+++. .+.++.+|||||+||
T Consensus 77 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 77 AAQLGIGI-IYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHHCCeEE-EeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 23454 555433222 2677777654221 01111 011234567788888875 466788999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|++|+.+|++|||||||++||+..+..+.++|.+
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 190
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=224.05 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=127.8
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC---
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~--- 147 (254)
+.++|+++|+++.|++.. +|+|+||++++|++++|+||||||||||+++|+|++... ++++|+ .++|...
T Consensus 3 ~~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ccceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 356899999999998633 669999999999999999999999999999999987410 124898 5665321
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (254)
....++ +.++... +. .++.+++.+.....+... ......+.++++.+++. .+..+..||+||
T Consensus 79 ~~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 79 GADVVALRRKIGM-VFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ 154 (253)
T ss_pred ccchhhhhceEEE-EecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence 112343 4554432 22 378888876544333211 11123455666666552 356778999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|+++|+||||++||+.+++.+.++|++
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 194 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 191
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=226.42 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=126.6
Q ss_pred cCCcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC-
Q 025366 72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK- 147 (254)
Q Consensus 72 ~~~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~- 147 (254)
|...++|+++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|++... .|++|+ .++|...
T Consensus 15 ~~~~~~l~~~nl~~~~~~~--~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 15 NPDHSVFEVEGVKVFYGGF--L--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred CCCCceEEEeeEEEEeCCe--E--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 4446789999999999863 2 669999999999999999999999999999999997410 125898 5666321
Q ss_pred ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (254)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (254)
....++ +.++...+ . .++.+++.+.....+... .......+.++.+++. .+.++..||+|
T Consensus 91 ~~~~~~~~~~~~i~~-v~q~~~l~-~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 91 DSQINSVKLRRQVGM-VFQRPNPF-P--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred cccchhHHHhhcEEE-EccCCccc-c--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 122343 55554322 2 367777765432222211 1123344555655542 35677899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|+|++.+|++||+||||++||+..++.+.++|.+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 206 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 192
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.7e-30 Score=222.53 Aligned_cols=165 Identities=13% Similarity=0.146 Sum_probs=128.2
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD 150 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~ 150 (254)
|+++++++.|++ . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... ...
T Consensus 1 l~~~~l~~~~~~--~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE--F---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD 72 (235)
T ss_pred CeeEeEEEEeCC--c---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence 468899999975 2 5699999999999999999999999999999999997 99999 6666322 123
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
.+. +.++...+. .+++.+++.+.....+.........+.++++.+++. .+..+..||+||+||+++|+|++.+|+
T Consensus 73 i~~-~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 73 ISY-VPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred EEE-EeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 444 555443222 267888876544333322222234556788888776 456778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+||||++||+.+++.+.+++.+
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~ 174 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKK 174 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999988753
No 193
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=225.10 Aligned_cols=171 Identities=13% Similarity=0.135 Sum_probs=126.0
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---- 147 (254)
.++++++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|+.... .|++|+ .++|...
T Consensus 19 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 19 EHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 35799999999998633 569999999999999999999999999999999986200 158999 5665321
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++... +. .++.+++.+.....+... ........+.++.+++. .+..+..||+||+
T Consensus 95 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 95 INVVNLRREIGM-VFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred ccHHHHhccEEE-EecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence 112344 5554432 22 367777765432222111 11123345666666653 3567889999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++|||||||++||+.+++.+.+++.+
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 209 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998853
No 194
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=250.75 Aligned_cols=175 Identities=16% Similarity=0.177 Sum_probs=135.4
Q ss_pred cceEEEecceeeccccc-------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~-------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~ 146 (254)
.++|+++||++.|+... ....+++++||+|++|+++||+|+||||||||+++|+|+++ |++|+ .++|..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~ 387 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR 387 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence 36899999999996210 01236799999999999999999999999999999999997 99999 666632
Q ss_pred C-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366 147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (254)
Q Consensus 147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---~~~~~~~lS~ 211 (254)
. ...+++ +.++.+....+.+++.+++.+.....+.. .......+.++++.+++. .+.++.+|||
T Consensus 388 i~~~~~~~~~~~~~~i~~-v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg 466 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQF-IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG 466 (623)
T ss_pred CCcCCHHHHHHhcCCeEE-EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence 1 123454 66665322223368888876644333321 112234667888988884 4678899999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+||+.+|+|||+||||++||+..+.++.++|.+
T Consensus 467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999853
No 195
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-30 Score=219.59 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=122.7
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
+.+ +|+|.|++.. + |+||++++ ++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 70 (214)
T cd03297 2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL 70 (214)
T ss_pred cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence 344 8999998832 3 99999999 9999999999999999999999997 99999 5666321
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~a 222 (254)
....++ +.++...+. .+++.+++.+..... ........+.++++.+++.. +..+..||+||+||+++|++
T Consensus 71 ~~~~~~i~~-~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 71 PPQQRKIGL-VFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARA 145 (214)
T ss_pred hhHhhcEEE-EecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHH
Confidence 112443 455433222 257777776543221 11122345677888888763 56788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++||+||||++||+.+++.+.+++.+
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQ 176 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998853
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=234.77 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=125.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
||++ ||+|.|++.. .++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ~l~~-~l~k~~~~~~------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 1 MLEL-NFKQQLGDLC------LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred CeEE-EEEEEeCCEE------EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 4777 9999998621 38999999999999999999999999999999997 99999 5665321
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....++ +.++...++ .+++.+++.+... ......+.++++.+++. .+.++..||+||+||+++|+
T Consensus 71 ~~~~~~~i~~-v~q~~~l~~--~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 71 LPPEKRRIGY-VFQDARLFP--HYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred cchhhCCEEE-EcCCcccCC--CCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 123444 555443222 3688888765321 12345677888888876 46788899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+.+|++|||||||++||+..++.+.++|.+
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999988853
No 197
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.8e-30 Score=224.00 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=129.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC------CCC
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS------QVK 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~------~~~ 147 (254)
.++++++++++.|++.. +++|+||++.+|++++|+|+||||||||+++|+|++. |++|+ .++| ...
T Consensus 8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI 80 (257)
T ss_pred hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence 46899999999998743 6699999999999999999999999999999999997 89876 3333 211
Q ss_pred --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (254)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (254)
....++ +.++...++ .+++.+++.+.....+.. .......+.++++.+++. .+..+..||+|
T Consensus 81 ~~~~~~~~~~~i~~-~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 81 FQIDAIKLRKEVGM-VFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred ccCCHHHHhcceEE-EccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 122344 555543322 257888876653332321 112224456777877774 24577899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|++++.+|+++|+||||++||..+++.+.++|.+
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~ 198 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 198
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=2.3e-30 Score=245.70 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=130.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCCC-
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVKP- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~~- 148 (254)
++++++||++.|++......+++++||++++||+++|+||||||||||+|+|+|+++ | ++|+ .++|....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence 579999999999631111126799999999999999999999999999999999996 4 7899 56663210
Q ss_pred -----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccCC-----CCCCCCCCh
Q 025366 149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH 211 (254)
Q Consensus 149 -----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~ 211 (254)
...|+ +.++......+.+++.++....... .+.........+.++++.+++.. +.++.+|||
T Consensus 81 ~~~~~~~~~~~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 81 ASEQTLRGVRGNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred CCHHHHHHHhcCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 23454 5665421111224566655433221 23332223456778888888853 668899999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||++||+||+.+|++|||||||++||+..++.+.+++.+
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998854
No 199
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=226.89 Aligned_cols=170 Identities=15% Similarity=0.062 Sum_probs=123.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----C-CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-PD 150 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~-~~ 150 (254)
+++++||++.|++. +. +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... . ..
T Consensus 6 ~l~~~~l~~~~~~~-~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEEEecCC-cE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence 58999999999631 22 5699999999999999999999999999999999997 99999 5666422 1 12
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
.++ +.++.........++.+++.... ...+. ..........++++.+++. .+.++..||+||+||+++|+|++
T Consensus 80 i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~ 158 (272)
T PRK15056 80 VAY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158 (272)
T ss_pred EEE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 443 44443211110122333332110 00111 1111233456777877775 46778899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++||+||||++||+.+++.+.++|.+
T Consensus 159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~ 187 (272)
T PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRE 187 (272)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998853
No 200
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=221.64 Aligned_cols=169 Identities=18% Similarity=0.145 Sum_probs=125.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCce-ecCCCCC----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK---- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p---~~G~-~~~~~~~---- 147 (254)
++++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|+.+. .| ++|+ .++|...
T Consensus 4 ~~l~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYGKF--E--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEECCe--e--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence 469999999999863 3 56999999999999999999999999999999998620 03 5898 5666422
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~ 214 (254)
....++ +.++... +. .++.+++.+.....+.... .......+.++.+++. .+..+..||+||+
T Consensus 79 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 79 EDVVQLRKQVGM-VFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred ccHHHhcCeEEE-EECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 122444 5554332 22 4778887664433332211 1123445566666542 3567789999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 201
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=222.92 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=126.5
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~- 147 (254)
.++|+++|+++.|++.. +++|+||++++|++++|+|+||||||||+++|+|+++ |+ .|+ .++|...
T Consensus 5 ~~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred cceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhh
Confidence 45799999999998632 6699999999999999999999999999999999996 64 677 4555321
Q ss_pred ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCCh
Q 025366 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 211 (254)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~ 211 (254)
....++ +.++.. ++. .++.+++.+.....+. +.......+.++++.+++. .+..+..||+
T Consensus 78 ~~~~~~~~~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSM-VHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 112333 444433 222 5777877654333332 1111234456777777663 3566789999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+++|++++.+|++|||||||++||+..++.+.+++.+
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~ 195 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 202
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=226.17 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=128.5
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC---
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK--- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~--- 147 (254)
..++|++++|++.|++. . +++|+||+|++|++++|+||||||||||+++|+|+.. ..+|++|+ .++|...
T Consensus 36 ~~~~l~~~~l~~~~~~~--~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF--E--AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred CceEEEEeeeEEEECCE--E--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 35689999999999863 2 5699999999999999999999999999999999852 11148999 5666321
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (254)
....++ +.++... +. .++.+++.+.....+... ......+.++++.+++. .+..+..||+||
T Consensus 112 ~~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 112 FTDEVLLRKKIGM-VFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred ccchHHhhhcEEE-ECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 112343 5555432 22 378888876543333321 11123455666666552 356778999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|++|||||||++||+..++.+.+++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 227 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE 227 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998853
No 203
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=2.5e-30 Score=244.91 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=128.3
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecC-----------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFD----------- 143 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~----------- 143 (254)
|+++|+++.|++. . +++++||++++|++++|+||||||||||+|+|+|++ + |++|+ .++
T Consensus 1 l~~~~l~~~~~~~--~--~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~ 73 (520)
T TIGR03269 1 IEVKNLTKKFDGK--E--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE 73 (520)
T ss_pred CEEEEEEEEECCe--E--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence 4789999999763 2 669999999999999999999999999999999996 5 89999 454
Q ss_pred ------------CCCC------------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH
Q 025366 144 ------------SQVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN 193 (254)
Q Consensus 144 ------------~~~~------------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~ 193 (254)
|... ....++ +.++...++. .+++.+++.+.....+........++.+
T Consensus 74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI-MLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred cccccccccccccccccccchhhhccCHHHHHHhhhcEEE-EeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1100 112344 5554222221 2578888876544444432223356778
Q ss_pred HHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 194 CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 194 ~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++.+++. .+.++.+|||||+||+++|+||+.+|++|||||||++||+..++.+.+++.+
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 88888885 3567899999999999999999999999999999999999999999888753
No 204
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-30 Score=223.96 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=127.8
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC---
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK--- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~--- 147 (254)
..++++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++. ..|++|+ .++|...
T Consensus 22 ~~~~l~~~nl~~~~~~~--~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 22 EQTALEVRNLNLFYGDK--Q--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CCcEEEEEEEEEEECCe--e--EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 34689999999999863 3 56999999999999999999999999999999999851 0137999 5666321
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 213 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~ 213 (254)
....++ +.++.. ++. .++.+++.+.....+... ......+.++++.+++. .+..+..||+||
T Consensus 98 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 98 KVDVAELRRRVGM-VFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ 173 (272)
T ss_pred ccCHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence 122343 455433 222 377777765433333211 11123456667766663 346678999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 213 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE 213 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 205
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.97 E-value=2.8e-30 Score=233.65 Aligned_cols=158 Identities=9% Similarity=0.079 Sum_probs=123.7
Q ss_pred cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------------C
Q 025366 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------P 148 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------------~ 148 (254)
||++.|++. .+ ++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 4 ~l~~~~~~~-----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~ 74 (354)
T TIGR02142 4 RFSKRLGDF-----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK 74 (354)
T ss_pred EEEEEECCE-----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence 789999863 23 8999999999999999999999999999999997 99999 5666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...+. +.++...++ .+++.+++.+..... ........+.++++.+++. .+.++.+||+||+||+++|+||+.+
T Consensus 75 ~~i~~-v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 75 RRIGY-VFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred CCeEE-EecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 22444 555433222 368888887643321 1112234567888888876 4677889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++|||||||++||+..++.+.++|.+
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~ 176 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLER 176 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 206
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-30 Score=226.31 Aligned_cols=167 Identities=15% Similarity=0.090 Sum_probs=126.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--------Cce-ecCCCCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQVK 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~--------~G~-~~~~~~~ 147 (254)
||+++|+++.|++.. +++++||++++|++++|+||||||||||+++|+|+++ |+ +|+ .++|...
T Consensus 1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~ 73 (272)
T PRK13547 1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL 73 (272)
T ss_pred CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence 488999999998633 5699999999999999999999999999999999997 77 898 5666422
Q ss_pred C--------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc----CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366 148 P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (254)
Q Consensus 148 ~--------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~ 213 (254)
. ...++ +.++...++. +++.+++.+..... +...........++++.+++. .+.++..||+||
T Consensus 74 ~~~~~~~~~~~~~~-v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 74 AAIDAPRLARLRAV-LPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred ccCCHHHHHhhcEE-ecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 1 11343 5555432222 57777765432111 111112234566788888775 456788999999
Q ss_pred hhhHhhhhhhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~---------~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++ .+|++|||||||++||+..++.+.+++.+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 199 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR 199 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999 59999999999999999999999998853
No 207
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=244.84 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=130.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
+++++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~~~l~~~~l~~~~~~~--~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 2 SPYLSFDGIGKTFPGV--K--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred CceEEEeeeEEEECCE--E--EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 3579999999999863 2 5699999999999999999999999999999999997 99999 5665322
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH--HcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~--~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
....++ +.++...+. .+++.+++.+... ..+. ........+.++++.+++. .+.++..|||||+||+++
T Consensus 75 ~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (501)
T PRK11288 75 AALAAGVAI-IYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEI 151 (501)
T ss_pred HHHhCCEEE-EEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHH
Confidence 123454 555433222 2678887765321 1121 1112234567888888875 356788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++++.+|++|||||||++||+..++.+.++|.+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998863
No 208
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5.3e-30 Score=214.69 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=114.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..+.++||++.|+.......+++++||++++|++++|+||||||||||+++|+|+++...|++|+ .++|...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred ceEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 35789999999976422233679999999999999999999999999999999998411146887 5555321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
....++ +.++...++ .+++.+++.+.... ..+..+..||+||+||+++|+|++.+|
T Consensus 82 ~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~---------------------~~~~~~~~LS~Ge~qrl~laral~~~p 137 (202)
T cd03233 82 PGEIIY-VSEEDVHFP--TLTVRETLDFALRC---------------------KGNEFVRGISGGERKRVSIAEALVSRA 137 (202)
T ss_pred cceEEE-EecccccCC--CCcHHHHHhhhhhh---------------------ccccchhhCCHHHHHHHHHHHHHhhCC
Confidence 112333 344332222 24666655432110 045667899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||+||||++||+..++.+.+++.+
T Consensus 138 ~llllDEPt~~LD~~~~~~~~~~l~~ 163 (202)
T cd03233 138 SVLCWDNSTRGLDSSTALEILKCIRT 163 (202)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 209
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.6e-30 Score=224.33 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=125.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (254)
.++|+++||++.|++. . +++|+||++++|++++|+|+||||||||+++|+|+++ | ++|+ .++|...
T Consensus 19 ~~~l~i~nl~~~~~~~--~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 19 APAMAAVNLTLGFAGK--T--VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred CcEEEEeeEEEEECCE--E--EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEcc
Confidence 4589999999999863 3 5699999999999999999999999999999999985 5 6898 5666321
Q ss_pred --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366 148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG 212 (254)
Q Consensus 148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G 212 (254)
....++ +.++.. ++. .++.+++.+....... ..........++++.+++. .+..+..||+|
T Consensus 92 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGM-LFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEE-eccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 112343 555433 222 4777777654322211 1111112345666777664 24567899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 208 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 210
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-29 Score=221.38 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=127.0
Q ss_pred CCcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCC
Q 025366 73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQV 146 (254)
Q Consensus 73 ~~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~ 146 (254)
....+|+++|+++.|++.. +++++||++++|++++|+|+||||||||+++|+|++. | ++|+ .++|..
T Consensus 12 ~~~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDN 84 (265)
T ss_pred CCCceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCcc
Confidence 3456799999999998632 6699999999999999999999999999999999985 4 6898 566532
Q ss_pred C------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCC
Q 025366 147 K------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAP 207 (254)
Q Consensus 147 ~------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~ 207 (254)
. ....++ +.++...+ . .++.+++.+.....+... ........++++.+++. .+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~-~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 160 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISM-VFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAF 160 (265)
T ss_pred ccccccccCHHHHhccEEE-EccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc
Confidence 1 112343 45443322 2 367777765433333221 11224455666666542 245678
Q ss_pred CCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 208 ~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.||+||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 206 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998863
No 211
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=209.18 Aligned_cols=169 Identities=16% Similarity=0.197 Sum_probs=127.5
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCC
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD 150 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~ 150 (254)
++.++++|+.|+||... +|++||++.++|++|.|+|.|||||||++|||.-+.+ |+.|. .+.|+.. +..
T Consensus 4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence 56799999999999965 6799999999999999999999999999999999987 99999 5555321 111
Q ss_pred eEEEee----------------CCCCCCCCcCCChhhcHHHH-HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCCh
Q 025366 151 VATVLP----------------MDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDH 211 (254)
Q Consensus 151 ~g~~i~----------------~~~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~ 211 (254)
.|..+. +..|.++.+ +++.+|.... ....|.+.....++...++..+++. .+.|+..|||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsH-mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSG 155 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSH-MTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSG 155 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHH-HHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCc
Confidence 122222 222333322 4455544332 2234555555556666677777665 4678899999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
||+||++|||||+.+|+++++||||+.|||+..-++.+.+
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~ 195 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVM 195 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877765
No 212
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.9e-30 Score=222.83 Aligned_cols=170 Identities=13% Similarity=0.114 Sum_probs=125.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~----- 147 (254)
++++++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ ...|++|+ .++|...
T Consensus 23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 4799999999998633 6699999999999999999999999999999999984 11258999 5666322
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhcc------CCCCCCCCCChhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 215 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l------~~~~~~~~lS~G~~q 215 (254)
....++ +.++... +. .++.+++.+.....+.... .....+.+.++.+++ ..+..+..||+||+|
T Consensus 99 ~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 99 SVEELRTNVGM-VFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred cHHHHhhhEEE-EecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 122444 5555432 22 3777887654332232111 112223444544432 135677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 212 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998853
No 213
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=4.7e-30 Score=208.68 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=107.2
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (254)
++++++++.|++. +. +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .+++. ...++ +.
T Consensus 1 i~~~~~~~~~~~~-~~--~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~-~~ 70 (166)
T cd03223 1 IELENLSLATPDG-RV--LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLF-LP 70 (166)
T ss_pred CEEEEEEEEcCCC-Ce--eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEE-EC
Confidence 4688999999642 22 5699999999999999999999999999999999997 88998 45442 23343 44
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~ 236 (254)
++... + ..++.+++.+ . .+..||+||+||+++|++++.+|+++|+||||
T Consensus 71 q~~~~-~--~~tv~~nl~~-------------------------~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIY-------------------------P---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhc-------------------------c---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 44321 1 1344444321 0 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhc
Q 025366 237 LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 237 ~~lD~~~~~~l~~ll~~ 253 (254)
++||+..++.+.+++.+
T Consensus 120 ~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 120 SALDEESEDRLYQLLKE 136 (166)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999998864
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=1.2e-29 Score=219.18 Aligned_cols=170 Identities=17% Similarity=0.140 Sum_probs=122.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCce-ecCCCCCC---
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKP--- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~-~~~~~~~~--- 148 (254)
.+++++++|++.|++.. +++++||++++|++++|+|+||||||||+++|+|+ ++ |++|+ .++|....
T Consensus 5 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 5 KPILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLE 77 (252)
T ss_pred CceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCC
Confidence 34799999999998632 67999999999999999999999999999999997 34 89999 56663211
Q ss_pred ----CCeE-EEeeCCCCCCCCcCCChhhcHHHHHHHc----CCCC-C--ccHHHHHHHHHhhccC---CCCCCC-CCChh
Q 025366 149 ----PDVA-TVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPW-T--FNPLLLLNCLKNLRNQ---GSVYAP-SFDHG 212 (254)
Q Consensus 149 ----~~~g-~~i~~~~~~~~~~~l~~~e~~~~~~~~~----g~~~-~--~~~~~~~~~l~~l~l~---~~~~~~-~lS~G 212 (254)
...+ .++.++...+ +.++..++..+..... +... . .....+.++++.+++. .+..+. .||+|
T Consensus 78 ~~~~~~~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG 155 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGG 155 (252)
T ss_pred hhhhheeeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHH
Confidence 1112 1233433222 1245555554322111 1111 0 0123456778887775 245555 59999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|+|++.+|+|||+||||++||+.+++.+.++|.+
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 196 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864
No 215
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3.2e-30 Score=242.56 Aligned_cols=162 Identities=10% Similarity=-0.018 Sum_probs=121.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
.+|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 2 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 2 SSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred ceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence 4799999999998633 6699999999999999999999999999999999997 99999 45553211
Q ss_pred --CCeEEEeeCCCCC-CCCc-----CCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHh
Q 025366 149 --PDVATVLPMDGFH-LYLS-----QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 149 --~~~g~~i~~~~~~-~~~~-----~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ 218 (254)
...+. +.++... +... .+++.++.. .. .....++.++++.+++. .+.++.+|||||+||++
T Consensus 75 ~~~~i~~-~~q~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 75 LQKLVSD-EWQRNNTDMLSPGEDDTGRTTAEIIQ-------DE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL 145 (490)
T ss_pred HHHHhce-eccCcchhhcccchhhccccHHHhcc-------cc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence 11333 3332110 0000 122222211 01 11234567888888875 46788899999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 180 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLAS 180 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 216
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.7e-30 Score=209.96 Aligned_cols=138 Identities=21% Similarity=0.252 Sum_probs=100.7
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (254)
++++++++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 l~~~~l~~~~~~~--~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~--------- 64 (173)
T cd03230 1 IEVRNLSKRYGKK--T--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDI--------- 64 (173)
T ss_pred CEEEEEEEEECCe--e--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc---------
Confidence 4688999999763 2 5699999999999999999999999999999999986 77776 3444211
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp 235 (254)
.. .. .......++ ++........++.+++. ||+||+||+++|++++.+|++||+|||
T Consensus 65 ------~~--~~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEP 122 (173)
T cd03230 65 ------KK--EP-----EEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEP 122 (173)
T ss_pred ------cc--ch-----HhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00 00 000111121 22111111112333322 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhc
Q 025366 236 YLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 236 ~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+..++.+.++|.+
T Consensus 123 t~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 123 TSGLDPESRREFWELLRE 140 (173)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999998864
No 217
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=5.1e-30 Score=218.81 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=117.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCce-ecCCCCC------CCCeEEEeeCCCCCCCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK------PPDVATVLPMDGFHLYL 164 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p----~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~ 164 (254)
+++|+||++++|++++|+||||||||||+++|+|+++ | ++|+ .++|... ....++ +.++......
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~ 76 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIAT-IMQNPRTAFN 76 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEE-EecCchhhcC
Confidence 4689999999999999999999999999999999997 7 8999 5666432 123444 5555421222
Q ss_pred cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-----CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCC
Q 025366 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (254)
Q Consensus 165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~l 239 (254)
..+++.++..+.....+.........+.++++.+++. .+..+..||+||+||+++|++++.+|+||||||||++|
T Consensus 77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 2356666665433333332222344577888888876 35677899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhc
Q 025366 240 DGGVWKDVSSMFDE 253 (254)
Q Consensus 240 D~~~~~~l~~ll~~ 253 (254)
|...+..+.+++.+
T Consensus 157 D~~~~~~l~~~l~~ 170 (230)
T TIGR02770 157 DVVNQARVLKLLRE 170 (230)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 218
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=8e-30 Score=210.19 Aligned_cols=136 Identities=22% Similarity=0.280 Sum_probs=101.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++.| +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD 71 (182)
T ss_pred cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence 469999999998 4599999999999999999999999999999999996 78877 44442110
Q ss_pred ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc
Q 025366 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
...++ +.++.. ......+++.+ ++.+... ||+||+||+++|+|++
T Consensus 72 ~~~~~i~~-~~q~~~~~~~~~~~t~~e-------------------------~l~~~~~-----LS~G~~qrl~la~al~ 120 (182)
T cd03215 72 AIRAGIAY-VPEDRKREGLVLDLSVAE-------------------------NIALSSL-----LSGGNQQKVVLARWLA 120 (182)
T ss_pred HHhCCeEE-ecCCcccCcccCCCcHHH-------------------------HHHHHhh-----cCHHHHHHHHHHHHHc
Confidence 11222 222210 00001122322 2222111 9999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++||+|||+++||+..++.+.+++.+
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998853
No 219
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=220.44 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=129.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~- 147 (254)
.+.+.++++++.|++.. +++++||++++|++++|+|+||||||||+++|+|+++ | ++|+ .++|...
T Consensus 6 ~~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred CceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEecc
Confidence 45789999999998733 6699999999999999999999999999999999986 5 6898 5666422
Q ss_pred ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC------CCCCCCCChh
Q 025366 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHG 212 (254)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~------~~~~~~lS~G 212 (254)
....++ +.++...+ . +++.+++.+.....+. .......+.++++.+++.. +.++..||+|
T Consensus 79 ~~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 79 GKGVDPVVVRRYIGM-VFQQPNPF-S--MSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred ccccchHhhhhceEE-EecCCccc-c--ccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 112344 55554332 2 6888888665433322 1122345677788777642 3456789999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+++|+|++.+|++||+||||++||+..+.++.++|.+
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~ 194 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864
No 220
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.97 E-value=7.6e-30 Score=212.47 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=108.3
Q ss_pred eEEEecceeeccccc--ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC---
Q 025366 77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP--- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~--~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~--- 148 (254)
.+++++|++.|++.. ....+++++||++++|++++|+||||||||||+++|+|++ + |++|+ .++|....
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence 478999999997520 0112679999999999999999999999999999999998 7 88998 56654321
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...++ +.++...+. .+++.+++.+... + ..||+||+||+++|+|++.+
T Consensus 80 ~~~~i~~-~~q~~~~~~--~~t~~~~i~~~~~-------------------~--------~~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 80 FRKIIGY-VPQDDILHP--TLTVRETLMFAAK-------------------L--------RGLSGGERKRVSIALELVSN 129 (194)
T ss_pred hhheEEE-ccCcccCCC--CCcHHHHHHHHHH-------------------h--------ccCCHHHHHHHHHHHHHHcC
Confidence 12232 333322111 1344444432110 0 18999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+..++.+.+++.+
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~ 156 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRR 156 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 221
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.6e-30 Score=213.61 Aligned_cols=143 Identities=22% Similarity=0.291 Sum_probs=101.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (254)
++++|+++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|
T Consensus 1 i~~~~l~~~~~~~--~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g------------ 61 (178)
T cd03229 1 LELKNVSKRYGQK--T--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDG------------ 61 (178)
T ss_pred CEEEEEEEEECCe--E--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECC------------
Confidence 4688999999863 3 5699999999999999999999999999999999986 66666 3333
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp 235 (254)
..+.. .+ +.........++ ++........++.+++.+. ||+||+||+++|++++.+|+++|+|||
T Consensus 62 ---~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 62 ---EDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred ---EEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 21110 00 000011111221 2211111112334443332 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhc
Q 025366 236 YLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 236 ~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+.++..+.+++.+
T Consensus 128 ~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 128 TSALDPITRREVRALLKS 145 (178)
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 999999999999998853
No 222
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=7.8e-30 Score=241.54 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=129.9
Q ss_pred cceEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC-CCC----C
Q 025366 75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQV----K 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~-~~~----~ 147 (254)
.++++++||++.|++. .....+++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .++ +.. .
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence 3579999999999531 011125699999999999999999999999999999999997 99999 553 321 0
Q ss_pred ----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-------CCCCCCCC
Q 025366 148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFD 210 (254)
Q Consensus 148 ----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------~~~~~~lS 210 (254)
....++ +.++... + +.+++.+++.+... .+.+.......+.++++.+++.. +.++.+||
T Consensus 354 ~~~~~~~~~~~~~i~~-v~q~~~l-~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGI-LHQEYDL-Y-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred ccchhhHHHHhhhEEE-EccCccc-C-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 112454 5555332 2 23688888765322 12222112345677888888853 57888999
Q ss_pred hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||+||+++|+||+.+|++||+||||++||+..++.+.++|.
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~ 471 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999884
No 223
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.97 E-value=5.2e-30 Score=217.05 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=118.7
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++++|+++.|++... .+++|+||++++|++++|+||||||||||+++|+|+.+ |++|+ .++|... .
T Consensus 3 l~~~~l~~~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 3 IEFRNVSFSYPNQEI--PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred EEEEEEEEEcCCCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence 789999999975211 26799999999999999999999999999999999997 99999 5666422 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--C-----------CCCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~-----------~~~~~lS~G~~q 215 (254)
...++ +.++... +. .++.+++.+. .. ......+.++++.+++.. + ..+..||+||+|
T Consensus 78 ~~i~~-~~q~~~~-~~--~tv~e~l~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 78 RNIGY-VPQDVTL-FY--GTLRDNITLG-----AP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred hhEEE-eCCCCcc-cc--chHHHHhhcC-----CC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 12343 4554432 22 3555554321 11 112234445555555431 1 134699999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ 185 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.5e-30 Score=241.54 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=127.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCC------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK------ 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~------ 147 (254)
+++++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ | ++|+ .++|...
T Consensus 1 ~l~i~~l~~~~~~~--~--il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~ 73 (500)
T TIGR02633 1 LLEMKGIVKTFGGV--K--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR 73 (500)
T ss_pred CEEEEeEEEEeCCe--E--eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence 47899999999863 2 5699999999999999999999999999999999985 5 7999 5666322
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--C--CCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhH
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 217 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv 217 (254)
....++ +.++...+. .+++.+++.+..... + .........+.++++.+++.. +.++.+|||||+||+
T Consensus 74 ~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 74 DTERAGIVI-IHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHhCCEEE-EeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 123454 555543222 367888775532211 1 111112345677888888753 356789999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998754
No 225
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=2.7e-30 Score=219.70 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=122.8
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
..++++++++++.|++... ..+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH 83 (226)
T ss_pred cCceEEEEEEEEEeCCCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence 4568999999999975211 126799999999999999999999999999999999997 99999 5666422
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCcc----HHHHHHHHHhh--ccC--CCCCCCCCChhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN----PLLLLNCLKNL--RNQ--GSVYAPSFDHGVGDP 216 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~----~~~~~~~l~~l--~l~--~~~~~~~lS~G~~qr 216 (254)
....++ +.++... +. .++.+++.+....... .... ...+.+.++.+ ++. .+.++.+||+||+||
T Consensus 84 ~~~~~~i~~-~~q~~~l-~~--~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qr 158 (226)
T cd03248 84 KYLHSKVSL-VGQEPVL-FA--RSLQDNIAYGLQSCSF-ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQR 158 (226)
T ss_pred HHHHhhEEE-EecccHH-Hh--hhHHHHhccccCCCCH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 122444 4544332 21 3555555331110000 0000 00123455555 333 355678999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 195 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 226
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=6e-30 Score=242.78 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=131.3
Q ss_pred cceEEEecceeeccccc-------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366 75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~-------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~ 146 (254)
.++++++||++.|+... ....+++++||++++|++++|+||||||||||+|+|+|++ |++|+ .++|..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~ 348 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP 348 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence 35799999999996210 0112679999999999999999999999999999999998 78999 566632
Q ss_pred C-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC--CCCCccHHHHHHHHHhhccC---CCCCCCCCC
Q 025366 147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (254)
Q Consensus 147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g--~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS 210 (254)
. ....++ +.++......+.+++.+++.+.....+ .........+.++++.+++. .+.++.+||
T Consensus 349 i~~~~~~~~~~~~~~i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 349 LHNLNRRQLLPVRHRIQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred ccccchhhHHHhhhceEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 1 123454 566532111223688888866432221 22222234567888888885 367889999
Q ss_pred hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 470 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998863
No 227
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=219.18 Aligned_cols=168 Identities=12% Similarity=0.079 Sum_probs=124.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~------- 147 (254)
-+++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|+.. ...|+.|+ .++|...
T Consensus 6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 46889999997632 5699999999999999999999999999999999973 11146899 5666321
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC--ccHHHHHHHHHhhccCC------CCCCCCCChhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP 216 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~~------~~~~~~lS~G~~qr 216 (254)
....++ +.++...+. .++.+++.+.....+.... .....+.++++.+++.. +..+..||+||+||
T Consensus 82 ~~~~~~i~~-v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 82 VLLRAKVGM-VFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred HHHhhhEEE-EecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 112344 555543222 2677777654322232111 12234567788887742 35678999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 194 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 228
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=1.8e-30 Score=222.34 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=117.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++++|+++.|++.... +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... .
T Consensus 1 i~~~~l~~~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~ 75 (237)
T cd03252 1 ITFEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred CEEEEEEEecCCCCcc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence 4688999999742222 6699999999999999999999999999999999997 99999 6666432 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHH---------HHHHHhh--ccC--CCCCCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~q 215 (254)
...++ +.++... +. .++.+++.+.. .+ .....+ .+.++.+ ++. .+.++.+||+||+|
T Consensus 76 ~~i~~-~~q~~~~-~~--~tv~~nl~~~~--~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q 145 (237)
T cd03252 76 RQVGV-VLQENVL-FN--RSIRDNIALAD--PG----MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ 145 (237)
T ss_pred hcEEE-EcCCchh-cc--chHHHHhhccC--CC----CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence 22444 5555432 22 46666654311 01 111111 2223333 111 24567899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 229
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=8.8e-30 Score=215.80 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=119.5
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++++|+++.|+...+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred EEEEEEEEecCCCCcc--cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence 6899999999753222 5699999999999999999999999999999999997 99999 5666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~q 215 (254)
...++ +.++.. ++. .++.+++... .......+.+.++.+++. ...++..||+||+|
T Consensus 78 ~~i~~-~~q~~~-l~~--~tv~enl~~~-------~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 78 SRISI-IPQDPV-LFS--GTIRSNLDPF-------GEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred hhEEE-ECCCCc-ccc--chHHHHhCcC-------CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 23443 555543 222 3555554321 111233344444444332 13467899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 184 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 230
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=2.2e-29 Score=214.27 Aligned_cols=174 Identities=17% Similarity=0.119 Sum_probs=126.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~ 150 (254)
.+.++||+++|.+......+++|+||++++|++++|+||||||||||+++|+|+++.-.|++|+ .++|... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4678999999965310123679999999999999999999999999999999998311148898 5666422 223
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC---CCccHHHHHH-HHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~---~~~~~~~~~~-~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
.++ +.++...+. .+++.+++.+........ .......... .++.+++. .+..+..||+||+||+++|++++
T Consensus 83 i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAY-VRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEE-eCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 443 555443222 368888887654322211 1111122333 66666665 35677899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|+++|+||||++||+.++..+.+++.+
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~ 188 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQ 188 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998864
No 231
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=7.2e-30 Score=201.92 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=137.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------- 147 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------- 147 (254)
|+++++++.||... +|.|++|+-++|+.+.|+||+|+|||||+|.|.-+.- |.+|+ .+-++..
T Consensus 3 irv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 3 IQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred eEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccHH
Confidence 78999999999966 7899999999999999999999999999999998886 99999 3333211
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
+.+.|- +. ..|+++.+ +++.+|+.... +..|+++.....+..++++.+.+. .+.++-.|||||+|||+|
T Consensus 76 ~i~~lr~~vgm-vf-qqy~lwph-ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 76 AIRDLRRNVGM-VF-QQYNLWPH-LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHHHhhhh-hh-hhhccCch-hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 234453 33 33455443 78888875544 457777777778889999998886 678888999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||+.+|++|++||||+.|||+...++.++|+|
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iike 186 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998875
No 232
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=5.9e-30 Score=210.21 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=105.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (254)
++++++++.|++.... +++++||++++|++++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 i~~~~~~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~ 61 (178)
T cd03247 1 LSINNVSFSYPEQEQQ--VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGE--------------ITL 61 (178)
T ss_pred CEEEEEEEEeCCCCcc--ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCE--------------EEE
Confidence 4688999999763112 5699999999999999999999999999999999985 66664 333
Q ss_pred CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (254)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~ 236 (254)
+|..+. .. ........++ ++...... .++.+++ +..||+||+||+++|++++.+|++||+||||
T Consensus 62 ~g~~~~-----~~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 62 DGVPVS-----DL--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred CCEEHH-----HH--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 332110 00 0111222332 33222211 2444444 7899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhc
Q 025366 237 LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 237 ~~lD~~~~~~l~~ll~~ 253 (254)
++||+..++.+.+++.+
T Consensus 127 ~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 127 VGLDPITERQLLSLIFE 143 (178)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 233
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=2.1e-29 Score=240.27 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=127.8
Q ss_pred cceEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeE
Q 025366 75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA 152 (254)
Q Consensus 75 ~~~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g 152 (254)
+++|+++||++.|+ +. . +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+.+. ...|
T Consensus 4 ~~~l~i~~l~~~y~~~~--~--il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~ 73 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKK--Q--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG 73 (556)
T ss_pred cEEEEEeeEEEEeCCCC--e--eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE
Confidence 35899999999998 53 2 6699999999999999999999999999999999997 99999 44432 2355
Q ss_pred EEeeCCCCCCCCcCCChhhcHHHHHHH--------------cCCCCC---------------------c-cHHHHHHHHH
Q 025366 153 TVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------F-NPLLLLNCLK 196 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~---------------------~-~~~~~~~~l~ 196 (254)
+ +.++..... .+++.+++.+.... .+.... + ....+.++++
T Consensus 74 ~-v~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (556)
T PRK11819 74 Y-LPQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMD 150 (556)
T ss_pred E-EecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 4 566543222 36888887653210 011100 0 1234566777
Q ss_pred hhccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 197 ~l~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+++. .+.++.+|||||+||+++|++++.+|++|||||||++||+.++..+.++|.+
T Consensus 151 ~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 151 ALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence 77764 4667889999999999999999999999999999999999999999998864
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=217.13 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=126.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----- 147 (254)
-+++++||++.|++. . +++++||++++|++++|+|+||||||||+++|+|++... .|++|+ .++|...
T Consensus 2 ~~l~~~~v~~~~~~~--~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 2 YRIEVENLNTYFDDA--H--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred cEEEEEeEEEEeCCe--E--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 468999999999863 2 569999999999999999999999999999999986311 138899 5666432
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ +.++... +. .++.+++.+.....+... ......+.+.++.+++. .+..+..||+||+|
T Consensus 78 ~~~~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 78 DVVELRKKVGM-VFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred cHHHHhhheEE-EecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 112444 5555432 22 367777765433222211 11223455667766652 35667899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 191 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK 191 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 235
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=1.1e-29 Score=216.83 Aligned_cols=151 Identities=15% Similarity=0.138 Sum_probs=115.9
Q ss_pred ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEEeeCCCCCCCCcCCChhhc
Q 025366 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMED 172 (254)
Q Consensus 97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~e~ 172 (254)
++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... .+..+. +.++...+. .+++.++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~-v~q~~~l~~--~~tv~e~ 74 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMV-VFQNYSLLP--WLTVREN 74 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheE-EecCcccCC--CCCHHHH
Confidence 479999999999999999999999999999999997 99999 5666432 122343 555543222 2688888
Q ss_pred HHHHHHH-c-CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366 173 PKEAHAR-R-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (254)
Q Consensus 173 ~~~~~~~-~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~ 248 (254)
+.+.... . +.........+.++++.+++. .+.++..||+||+||+++|++++.+|++||+||||++||+..++.+.
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 7664321 1 111112233467788887775 35678899999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 025366 249 SMFDE 253 (254)
Q Consensus 249 ~ll~~ 253 (254)
++|.+
T Consensus 155 ~~l~~ 159 (230)
T TIGR01184 155 EELMQ 159 (230)
T ss_pred HHHHH
Confidence 98853
No 236
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=1.1e-29 Score=207.65 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=102.6
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (254)
++++|+++.|++... .+++++||++++|++++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 i~~~~l~~~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~ 61 (173)
T cd03246 1 LEVENVSFRYPGAEP--PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGR--------------VRL 61 (173)
T ss_pred CEEEEEEEEcCCCCC--cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCe--------------EEE
Confidence 468899999975221 26799999999999999999999999999999999996 66665 233
Q ss_pred CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (254)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~ 236 (254)
+|..+.. .+. .......++ ++...... .++.+++ ||+||+||+++|++++.+|++||+||||
T Consensus 62 ~g~~~~~--~~~----~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 62 DGADISQ--WDP----NELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred CCEEccc--CCH----HHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 3322110 010 011122222 33222111 2444544 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhc
Q 025366 237 LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 237 ~~lD~~~~~~l~~ll~~ 253 (254)
++||+..++.+.+++.+
T Consensus 125 ~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 125 SHLDVEGERALNQAIAA 141 (173)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999999999998853
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=3e-29 Score=216.11 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=116.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC-----
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~----- 148 (254)
+++++||++.|++.. +++++||++++|++++|+|+||||||||+++|+|++ + |++|+ .++|....
T Consensus 1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence 478999999998633 669999999999999999999999999999999994 4 89999 56664221
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH---cCCCCCcc----HHHHHHHHHhhccC---CCCCCC-CCChhh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGV 213 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~---~g~~~~~~----~~~~~~~l~~l~l~---~~~~~~-~lS~G~ 213 (254)
...++ +.++..... .++..+........ .......+ ...+.+.++.+++. ....+. .||+||
T Consensus 74 ~~~~~~i~~-~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 74 DRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred HHhhcceEE-EecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 12333 444432211 12222222111111 00000011 22345666766663 233343 799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+||+++|+|++.+|++||+||||++||+.+++.+.++|.
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~ 189 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998775
No 238
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=8.6e-30 Score=207.99 Aligned_cols=140 Identities=18% Similarity=0.196 Sum_probs=102.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (254)
++++++++.|++.... +++++||++++|++++|+||||||||||+++|+|+++ |++|+ +.+
T Consensus 1 l~~~~l~~~~~~~~~~--~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~--------------i~~ 61 (171)
T cd03228 1 IEFKNVSFSYPGRPKP--VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGE--------------ILI 61 (171)
T ss_pred CEEEEEEEEcCCCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCE--------------EEE
Confidence 4688999999863112 6799999999999999999999999999999999996 66665 233
Q ss_pred CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (254)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~ 236 (254)
+|..+.. ... .......++ ++...... .++.+++ ||+||+||+++|++++.+|++||+||||
T Consensus 62 ~g~~~~~--~~~----~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 62 DGVDLRD--LDL----ESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred CCEEhhh--cCH----HHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 3322110 000 111122332 33222221 2444444 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhc
Q 025366 237 LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 237 ~~lD~~~~~~l~~ll~~ 253 (254)
++||+..++++.+++.+
T Consensus 125 ~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 125 SALDPETEALILEALRA 141 (171)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999998854
No 239
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=1.2e-29 Score=264.67 Aligned_cols=170 Identities=15% Similarity=0.079 Sum_probs=138.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
.+|+++||+|.|++. ...|++|+||+|++||++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence 479999999999852 1227799999999999999999999999999999999998 99999 6666332
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|+ +.++..... .+++.|++.+....+|.+.......+.++++.+++. .+.++..||||||||+++|+||+.
T Consensus 2011 r~~IGy-~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2011 HQNMGY-CPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred hhhEEE-EeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 234565 555543332 379999988766666765433344566788888875 467889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|+||||||||++||+..++.++++|.+
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 240
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.9e-29 Score=209.67 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=106.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCC
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD 150 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~ 150 (254)
.+++++++++.|++......+++++||++++|++++|+||||||||||+++|+|+.. ..|++|+ .+++... ...
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~~~~~~~~ 80 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPLDKNFQRS 80 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEehHHHhhhc
Confidence 368999999999752101125699999999999999999999999999999999752 0167777 4555321 122
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
.++ +.++...+. .+++.+++.+... + ..||+||+||+++|+|++.+|++|
T Consensus 81 i~~-~~q~~~~~~--~~tv~~~l~~~~~-------------------~--------~~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 81 TGY-VEQQDVHSP--NLTVREALRFSAL-------------------L--------RGLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred eEE-ecccCcccc--CCcHHHHHHHHHH-------------------H--------hcCCHHHhHHHHHHHHHhcCCcEE
Confidence 232 333222111 1344444432110 0 089999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+|||+++||+..++.+.+++.+
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~ 153 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKK 153 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 241
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=3.8e-29 Score=217.70 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=111.0
Q ss_pred eccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhc
Q 025366 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (254)
Q Consensus 94 vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~ 172 (254)
..+++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|+. +. +.+... + ...+++.++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~-----~~-~~~~~~-~-~~~~tv~en 105 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGEV-----SV-IAISAG-L-SGQLTGIEN 105 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEE-----eE-EecccC-C-CCCCcHHHH
Confidence 346799999999999999999999999999999999997 99998 555531 11 222211 1 123577777
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366 173 PKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (254)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~l 250 (254)
+.+.....+............+++.+++. .+..+..||+||+||+++|++++.+|++|||||||++||+..++.+.++
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~ 185 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 76543333332111122334556655554 3557789999999999999999999999999999999999999999988
Q ss_pred hhc
Q 025366 251 FDE 253 (254)
Q Consensus 251 l~~ 253 (254)
+.+
T Consensus 186 L~~ 188 (264)
T PRK13546 186 IYE 188 (264)
T ss_pred HHH
Confidence 753
No 242
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=6.2e-30 Score=207.41 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=98.1
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (254)
++++||++.|++. . +++++||++++||+++|+||||||||||+++|+|+++ |++| . +.+
T Consensus 1 l~~~~l~~~~~~~--~--vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G-------------~-v~~ 59 (163)
T cd03216 1 LELRGITKRFGGV--K--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSG-------------E-ILV 59 (163)
T ss_pred CEEEEEEEEECCe--E--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCe-------------E-EEE
Confidence 4688999999863 3 5699999999999999999999999999999999985 5554 4 444
Q ss_pred CCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~ 237 (254)
++..+.. .+.. .......++ +++||+||+||+++|++++.+|++||+||||+
T Consensus 60 ~g~~~~~--~~~~---~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~ 111 (163)
T cd03216 60 DGKEVSF--ASPR---DARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA 111 (163)
T ss_pred CCEECCc--CCHH---HHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 4432211 0100 111111221 11299999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhc
Q 025366 238 FLDGGVWKDVSSMFDE 253 (254)
Q Consensus 238 ~lD~~~~~~l~~ll~~ 253 (254)
+||+..++.+.+++.+
T Consensus 112 ~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 112 ALTPAEVERLFKVIRR 127 (163)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998854
No 243
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=7.4e-30 Score=210.06 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=106.5
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCC
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~ 158 (254)
+++||++.|++. . +++++||++++|++++|+||||||||||+++|+|+++ |++| . |.++
T Consensus 1 ~~~~l~~~~~~~--~--~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G-------------~-v~~~ 59 (180)
T cd03214 1 EVENLSVGYGGR--T--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSG-------------E-ILLD 59 (180)
T ss_pred CeeEEEEEECCe--e--eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCc-------------E-EEEC
Confidence 468999999863 2 6699999999999999999999999999999999985 5555 3 3444
Q ss_pred CCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366 159 GFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (254)
Q Consensus 159 ~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp 235 (254)
+..+.. ... .......++ ++ +++.+++. .+..+..||+||+||+++|++++.+|+++|+|||
T Consensus 60 g~~~~~--~~~----~~~~~~i~~~~q---------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 60 GKDLAS--LSP----KELARKIAYVPQ---------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred CEECCc--CCH----HHHHHHHhHHHH---------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 433211 111 111112222 11 56666654 3466789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhc
Q 025366 236 YLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 236 ~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+..++.+.+++.+
T Consensus 125 ~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 125 TSHLDIAHQIELLELLRR 142 (180)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 999999999999998853
No 244
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=4.3e-29 Score=209.72 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=120.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++++++.|++... .+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 5 ~~l~~~~l~~~~~~~~~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 79 (207)
T cd03369 5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED 79 (207)
T ss_pred CeEEEEEEEEEeCCCCc--ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence 46899999999975211 26799999999999999999999999999999999997 99999 5666321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
....++ +.++.. ++. .++.+++.+. .......+.+.++ .+.++..||+||+||+++|++++.+
T Consensus 80 ~~~~i~~-v~q~~~-~~~--~tv~~~l~~~-------~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 80 LRSSLTI-IPQDPT-LFS--GTIRSNLDPF-------DEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HHhhEEE-EecCCc-ccC--ccHHHHhccc-------CCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 123454 555543 222 3666655321 1122233333333 3567889999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||||++||+..++.+.++|.+
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~ 170 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIRE 170 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998864
No 245
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=4.9e-30 Score=219.16 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=117.9
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++++|+++.|++.... +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 1 i~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 75 (234)
T cd03251 1 VEFKNVTFRYPGDGPP--VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR 75 (234)
T ss_pred CEEEEEEEEeCCCCcc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence 4689999999763112 5699999999999999999999999999999999997 99999 6666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHH---------HHHHHHhh--ccC--CCCCCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNL--RNQ--GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~---------~~~~l~~l--~l~--~~~~~~~lS~G~~q 215 (254)
...++ +.++... +. .++.+++.+... . ..... +.+.++.+ ++. .+..+..||+||+|
T Consensus 76 ~~i~~-~~q~~~~-~~--~tv~enl~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q 145 (234)
T cd03251 76 RQIGL-VSQDVFL-FN--DTVAENIAYGRP-----G-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ 145 (234)
T ss_pred hhEEE-eCCCCee-cc--ccHHHHhhccCC-----C-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence 12343 5554332 22 466666543211 0 11111 12333333 222 34567899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 246
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=3.3e-29 Score=209.93 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=113.0
Q ss_pred EEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366 78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (254)
Q Consensus 78 l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (254)
++++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+.+ |++|+ .++| ..++ +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~-~ 71 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAY-V 71 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEE-E
Confidence 468999999976310 0126699999999999999999999999999999999997 99999 5665 3454 5
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhhhhhHhhhhh
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~qrv~ia~a 222 (254)
.++...+ . .++.+++.+.. ........+.++.+++ + ....+..||+||+||+++|++
T Consensus 72 ~q~~~l~-~--~t~~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara 141 (204)
T cd03250 72 SQEPWIQ-N--GTIRENILFGK-------PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA 141 (204)
T ss_pred ecCchhc-c--CcHHHHhccCC-------CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 5554332 2 46666654311 1111222222222221 1 234567899999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
++.+|+++|+|||+++||+..++.+.+
T Consensus 142 l~~~p~llllDEP~~~LD~~~~~~l~~ 168 (204)
T cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFE 168 (204)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 999999999999999999999998877
No 247
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.8e-29 Score=220.41 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=127.7
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC---
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~--- 147 (254)
+.++|+++||++.|++.. +|+++||++++|++++|+|+||||||||+++|+|+++.. +|++|+ .++|...
T Consensus 42 ~~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~ 117 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117 (305)
T ss_pred CCceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 345799999999998733 679999999999999999999999999999999998411 258999 5666321
Q ss_pred -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC------------CC-CCccHHHHHHHHHhhccC------
Q 025366 148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------AP-WTFNPLLLLNCLKNLRNQ------ 201 (254)
Q Consensus 148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g------------~~-~~~~~~~~~~~l~~l~l~------ 201 (254)
....++ +.++.. ++. .++.+++.+.....+ .. .......+.++++.+++.
T Consensus 118 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 118 GVNLVELRKRVGM-VFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred cccHHHHhhceEE-EccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 112343 455433 222 477887765432211 10 011123456677777653
Q ss_pred CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 202 ~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+.++..||+||+||+++|+||+.+|+||||||||++||+.++..+.++|.+
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~ 245 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE 245 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2566789999999999999999999999999999999999999999998864
No 248
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.5e-29 Score=239.18 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=127.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++.|+. +++|+||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence 47999999997642 6799999999999999999999999999999999997 99999 66663221
Q ss_pred ---CCeEEEeeCCC--CCCCCcCCChhhcHHHHHHH----c----CC-CCCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366 149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEAHAR----R----GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (254)
Q Consensus 149 ---~~~g~~i~~~~--~~~~~~~l~~~e~~~~~~~~----~----g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~ 211 (254)
...++ +.++. ..++ +.+++.+++.+.... . +. ........+.++++.+++. .+.++.+|||
T Consensus 335 ~~~~~i~~-v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 335 AVKKGMAY-ITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHCCcEE-ccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 13454 55542 1122 236777776542211 0 11 0111223457888888884 4677889999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||+++|++|+.+|+||||||||++||+.+++.+.++|.+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 454 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ 454 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999863
No 249
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=238.60 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=128.7
Q ss_pred ceEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~~~~----- 147 (254)
++|+++||++.|+.. ... +++++||++++|++++|+|+||||||||+|+|+|+++ | ++|+ .++|...
T Consensus 258 ~~l~~~~l~~~~~~~~~~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIK--RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccccccc--cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence 479999999999421 122 6799999999999999999999999999999999985 5 8999 5665321
Q ss_pred ----CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHH-Hc-C---CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhh
Q 025366 148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ----~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~-~~-g---~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~ 214 (254)
....++ +.++.. ......+++.+++.+... .+ + .........+.++++.+++. .+.++.+||||||
T Consensus 333 ~~~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 333 QQAIAQGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQ 411 (506)
T ss_pred HHHHHCCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHH
Confidence 122454 555532 111223688887764321 11 1 01111234567888888874 3677889999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++|||||||++||+.+++.+.++|.+
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998763
No 250
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=238.87 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=125.4
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------CC
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------PP 149 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------~~ 149 (254)
++||++.|++. . +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... ..
T Consensus 1 ~~nl~~~~~~~--~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~ 73 (491)
T PRK10982 1 MSNISKSFPGV--K--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN 73 (491)
T ss_pred CCceEEEeCCE--E--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence 36899999863 2 6699999999999999999999999999999999997 99999 6676432 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCC--CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~--~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
..++ +.++...+. .+++.+++.+.... .+. ........+.++++.+++. .+.++.+|||||+||+++|++++
T Consensus 74 ~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 74 GISM-VHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred CEEE-Eeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 3454 555543222 26787777543211 111 1111223567778888775 45678899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+..++.+.+++.+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998854
No 251
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.5e-29 Score=214.11 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=115.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++|+++.|++. .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 2 ~l~~~~l~~~~~~~-~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 2 EIEFENVNFSYDEK-KP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred eEEEEEEEEecCCC-Cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence 37899999999742 12 5699999999999999999999999999999999997 99999 5665321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc-----------C--CCCCCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-----------Q--GSVYAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~lS~G~~ 214 (254)
....++ +.++.. ++. .++.+++.+. ... .....+...++.+++ . ....+..||+||+
T Consensus 76 ~~~i~~-~~q~~~-~~~--~tv~~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 76 RSMIGV-VLQDTF-LFS--GTIMENIRLG-----RPN-ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred hhhEEE-ecCCch-hhh--hHHHHHHhcc-----CCC-CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 122343 444432 221 2455544321 111 112223333332221 1 2345689999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++|+.+|++||+||||++||+..++.+.+++.+
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 184 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK 184 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 252
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.8e-29 Score=237.41 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=125.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (254)
||+++||++.|++.. +++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .+++. ...++ +
T Consensus 1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~-~ 69 (530)
T PRK15064 1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGK-L 69 (530)
T ss_pred CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence 488999999998633 5699999999999999999999999999999999997 99999 55542 23454 5
Q ss_pred eCCCCCCCCcCCChhhcHHHHHH-----------HcCCCC---------------------CccHHHHHHHHHhhccCC-
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG- 202 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~-----------~~g~~~---------------------~~~~~~~~~~l~~l~l~~- 202 (254)
.++...+ ..+++.+++.+... ..+.+. .....++.++++.+++..
T Consensus 70 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 70 RQDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred eccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 5544322 22577776653210 001000 011235667888888753
Q ss_pred --CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 203 --SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 203 --~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..+..||+||+||+++|++|+.+|+||||||||++||+..+..+.+++.+
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence 356789999999999999999999999999999999999999999998853
No 253
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.6e-29 Score=237.55 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=127.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. ...|+
T Consensus 318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~- 386 (530)
T PRK15064 318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGY- 386 (530)
T ss_pred ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence 4799999999998733 5699999999999999999999999999999999997 99999 55542 23454
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++........+++.+++... .. .......+.++++.+++. .+.++..|||||+||+++|++++.+|++||
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~----~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll 461 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQW----RQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461 (530)
T ss_pred EcccccccCCCCCcHHHHHHHh----cc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554321122225666655321 11 112345677888888873 467889999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+.+++.+.++|.+
T Consensus 462 LDEPt~~LD~~~~~~l~~~l~~ 483 (530)
T PRK15064 462 MDEPTNHMDMESIESLNMALEK 483 (530)
T ss_pred EcCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 254
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=4.7e-29 Score=237.80 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=128.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. ...++
T Consensus 321 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~- 389 (552)
T TIGR03719 321 KVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY- 389 (552)
T ss_pred eEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE-
Confidence 5799999999998733 6699999999999999999999999999999999997 99999 44322 23555
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++...++ ..+++.+++.+.....+... .......+++.+++. .+.++..|||||+||+++|++++.+|++||
T Consensus 390 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 390 VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 566532122 23688887765332122211 122345678888874 366789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+.+++.+.++|.+
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~ 488 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLE 488 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 255
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=4.2e-29 Score=232.41 Aligned_cols=166 Identities=15% Similarity=0.121 Sum_probs=125.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++||++.|++... ..+|+++||++++|+++||+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 20 ~mL~lknL~~~~~~~~~-~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~- 89 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEY-HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L- 89 (549)
T ss_pred ceeEEEEEEEecCCCcc-ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e-
Confidence 46999999999987421 126799999999999999999999999999999999997 99999 5565321 1
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl 232 (254)
+.+... ....+++.+++.+.....+............+++.+++. .+..+..||+||+||+++|+||+.+|++|||
T Consensus 90 i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 90 IAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred EEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 111111 112367888776533323322212223455677777775 4677889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhhc
Q 025366 233 DGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 233 DEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||++||+..++.+.++|.+
T Consensus 168 DEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999988853
No 256
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-29 Score=203.07 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=132.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeE---
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA--- 152 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g--- 152 (254)
++++++++..-+... .+.+++|++.+||++-|.||||||||||+|+|+|++. |++|+ .+.+........
T Consensus 2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH 74 (209)
T ss_pred cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence 477888988888743 5699999999999999999999999999999999998 99999 555432211111
Q ss_pred EEeeCCCCC-CCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366 153 TVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 153 ~~i~~~~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
..+.+-|.. --...+|+.||+.|.....+. .+...+.+.++.+++. .+.++.+||-||++|+++|+-++..+++
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 001111111 112348999999998887664 3456678889999887 6788889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 230 VIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 230 lIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||||||++||+.....+..++.+
T Consensus 152 WiLDEP~taLDk~g~a~l~~l~~~ 175 (209)
T COG4133 152 WILDEPFTALDKEGVALLTALMAA 175 (209)
T ss_pred eeecCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999888764
No 257
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=2e-29 Score=237.10 Aligned_cols=171 Identities=16% Similarity=0.021 Sum_probs=123.1
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK----- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~~~~----- 147 (254)
.++++++|+++.|++.. +++++||++++|++++|+||||||||||+|+|+|+.+ + ++|+ .++|...
T Consensus 258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence 46799999999998633 5699999999999999999999999999999999873 4 5899 5665321
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCC---CCccHHHHHHHHHhhccCC---CCCCCCCChhhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP 216 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qr 216 (254)
....++ +.++.........++.+........ .+.. .......+.++++.+++.. +.++..||+||+||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence 112344 4443211111112333322211100 0111 1112345678888888753 56778999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~ 446 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDV 446 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998864
No 258
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=6.6e-29 Score=236.90 Aligned_cols=164 Identities=16% Similarity=0.132 Sum_probs=128.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++||++.|++.. +++++||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. ...|+
T Consensus 323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~- 391 (556)
T PRK11819 323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY- 391 (556)
T ss_pred eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence 4799999999998733 6699999999999999999999999999999999997 99999 44322 23555
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++...++ ..+++.+++.+.....+... .......+++.+++. .+..+..|||||+||+++|++++.+|++||
T Consensus 392 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 392 VDQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred EeCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 565531222 23688887765432222211 123345678888874 367789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+.+++.+.++|.+
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLE 490 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 259
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=6.2e-29 Score=259.47 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=139.0
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
.+.|+++||+|.|++..+. +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 926 ~~~L~I~nLsK~y~~~~k~--aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred CceEEEEeEEEEecCCCce--EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence 3579999999999631122 6799999999999999999999999999999999998 99999 6666432
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
+...|. +.++...+ +.+++.|++.+..+..+.........+.++++.+++. .+.++.+||||||||+++|+|++
T Consensus 1001 ~r~~IG~-~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1001 VRQSLGM-CPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred HhhcEEE-EecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 233565 56654332 2379999998876666654333345677888988886 46778899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|+||||||||++||+..++.++++|.+
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999864
No 260
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=1.2e-29 Score=217.31 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=115.4
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++++|+++.|++..+ ..+++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... .
T Consensus 1 l~i~~l~~~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRPD-VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCCC-ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence 468999999975211 126699999999999999999999999999999999997 99999 5666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHH---------HHHHhh--cc--CCCCCCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNL--RN--QGSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l--~l--~~~~~~~~lS~G~~q 215 (254)
...++ +.++... +. .++.+++.+.. .. ....... +.++.+ ++ .....+..||+||+|
T Consensus 77 ~~i~~-~~q~~~~-~~--~tv~e~l~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 146 (238)
T cd03249 77 SQIGL-VSQEPVL-FD--GTIAENIRYGK-----PD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ 146 (238)
T ss_pred hhEEE-ECCchhh-hh--hhHHHHhhccC-----CC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence 22443 4444322 21 35555543311 11 0111111 222222 11 134567899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus 147 rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~ 184 (238)
T cd03249 147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184 (238)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 261
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=1.3e-28 Score=234.80 Aligned_cols=164 Identities=16% Similarity=0.053 Sum_probs=124.5
Q ss_pred eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
+++++||++.|+ +. . +++|+||+|++|++++|+||||||||||+++|+|+++ |++|+ .+++. ...|+
T Consensus 4 ~i~~~nls~~~~~~~--~--il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~- 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKK--E--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKVGY- 72 (552)
T ss_pred EEEEeeEEEecCCCC--e--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-
Confidence 699999999997 42 2 5699999999999999999999999999999999997 99999 44432 23554
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHH--------------cCCCCCc----------------------cHHHHHHHHHhh
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNL 198 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~l 198 (254)
+.++..... .+++.+++.+.... ++..... ....+.++++.+
T Consensus 73 v~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 73 LPQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EeccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 566543222 26888887652211 0111110 012334556666
Q ss_pred ccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 199 RNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 199 ~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++. .+.++..|||||+||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus 151 ~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 151 RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred CCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence 653 3567889999999999999999999999999999999999999999998864
No 262
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.4e-29 Score=230.06 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=135.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
+++++++|++|+|++-+ ||++|||++++||+++|+|.||||||||+|+|+|.++ |++|+ .++|+...
T Consensus 6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence 56899999999999854 8899999999999999999999999999999999998 99999 67875432
Q ss_pred --CCeEE-EeeCCCCCCCCcCCChhhcHHHHHHH---cCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 149 --PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHAR---RGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 149 --~~~g~-~i~~~~~~~~~~~l~~~e~~~~~~~~---~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
...|. +|.|+--..+ ++++.||+-..+.. +++ .+........++++.+++. .+..+.+||.||||-|+|
T Consensus 79 ~A~~~GI~~V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence 11222 2555544333 38999988654332 232 2233344567788877764 667788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+|+..+++||||||||+.|+....+.+.+++.+
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888753
No 263
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=3.7e-29 Score=235.92 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=127.3
Q ss_pred ceEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~~~~----- 147 (254)
++++++|+++.|+.. ... +++++||++++|++++|+||||||||||+|+|+|+++ | ++|+ .++|...
T Consensus 256 ~~l~~~~l~~~~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRK--RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccccccc--ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence 379999999999421 112 6799999999999999999999999999999999985 6 7999 5666322
Q ss_pred ----CCCeEEEeeCCCC--CCCCcCCChhhcHHHHHH-Hc-C---CCCCccHHHHHHHHHhhccC---CCCCCCCCChhh
Q 025366 148 ----PPDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 213 (254)
Q Consensus 148 ----~~~~g~~i~~~~~--~~~~~~l~~~e~~~~~~~-~~-g---~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~ 213 (254)
....++ +.++.. .++ +.+++.+++.+... .. . .........+.++++.+++. .+.++..|||||
T Consensus 331 ~~~~~~~i~~-v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 408 (500)
T TIGR02633 331 AQAIRAGIAM-VPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN 408 (500)
T ss_pred HHHHhCCCEE-cCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence 123454 555421 111 23677777654321 11 1 11111234567888888884 367788999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|++++.+|++|||||||++||+..++.+.+++.+
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 448 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ 448 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988754
No 264
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=7.8e-30 Score=202.64 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=127.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
.++++++.+.-++. . +|+++||.+.+||+++|.||||||||||+|+++-++. |++|+ .|.|+...
T Consensus 3 lle~kq~~y~a~~a--~--il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~ 75 (223)
T COG4619 3 LLELKQVGYLAGDA--K--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY 75 (223)
T ss_pred chHHHHHHhhcCCC--e--eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence 45666665555553 3 5699999999999999999999999999999999998 99999 78876431
Q ss_pred -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhc
Q 025366 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
..+.+ +.+..-.+. -++.+|+.+....+. ..++......+++.++++ ....+..||||++||++++|.|.
T Consensus 76 Rq~VsY-~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 76 RQQVSY-CAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred HHHHHH-HHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 11111 222222222 367777766444332 334678888999999987 46678899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
--|+||+|||||+.||+.+++.+-++|.
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~ 177 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIH 177 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHH
Confidence 9999999999999999999999999875
No 265
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=3.2e-29 Score=209.65 Aligned_cols=147 Identities=17% Similarity=0.099 Sum_probs=100.9
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP 156 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~ 156 (254)
++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|+.. ..|++|+ .++|+.
T Consensus 1 l~~~~l~~~~~~~--~--~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~p~~G~i~~~g~~---------- 65 (200)
T cd03217 1 LEIKDLHVSVGGK--E--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGED---------- 65 (200)
T ss_pred CeEEEEEEEeCCE--E--eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCccEEEECCEE----------
Confidence 4688999999863 2 6699999999999999999999999999999999941 1167776 444421
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp 235 (254)
+.. .... .......++ ++.........+.+.+ ......||+||+||+++|++++.+|++||+|||
T Consensus 66 -----~~~--~~~~---~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 66 -----ITD--LPPE---ERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred -----CCc--CCHH---HHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 110 0000 000001111 1111111111111111 122358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhhc
Q 025366 236 YLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 236 ~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+.++..+.+++.+
T Consensus 132 t~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 132 DSGLDIDALRLVAEVINK 149 (200)
T ss_pred CccCCHHHHHHHHHHHHH
Confidence 999999999999998853
No 266
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.96 E-value=8.9e-29 Score=234.74 Aligned_cols=161 Identities=14% Similarity=0.167 Sum_probs=127.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~ 148 (254)
.++++||++.|++.. . +|+|+||++++|+.++|+||||||||||+++|+|+++ |++|+ .++|... +
T Consensus 334 ~I~~~~vsf~Y~~~~-~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGSP-P--VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred eEEEEEEEEecCCCC-c--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence 599999999997632 2 5699999999999999999999999999999999998 99999 6776322 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~q 215 (254)
...++ ++++.+.+. -|+.+|+.+. .+ +.+.+++.++++..++. .+.. -..|||||||
T Consensus 408 ~~i~~-V~Q~~~lF~---~TI~eNI~~g-----~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 408 RRISV-FAQDAHLFD---TTVRDNLRLG-----RP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hheEE-EccCccccc---ccHHHHHhcc-----CC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 24454 788876554 3777776542 22 23455666666665543 2332 2469999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|||++.+|+|+||||||++||+.+.+.+.+.+.+
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888753
No 267
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=218.73 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=127.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----- 147 (254)
.+|+++|+++.|.+.... +|+|+||+|++|+++||+|+||||||||+++|+|+.... .|++|+ .++|...
T Consensus 79 ~~i~~~nls~~y~~~~~~--~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred ceEEEEeeEEEecCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 479999999999642222 569999999999999999999999999999999998411 156899 6666432
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q 215 (254)
....++ ++++...+ . .++.+|+.+.....+.... ........+++.+++. .......||+||+|
T Consensus 157 ~~~~lr~~i~~-v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 157 SSLELRTRIGM-VFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred chHhhhccEEE-EecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 123444 56654433 2 5888888764332222111 1112345666766652 34677899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|||++.+|+||||||||++||+.+.+.+.++|.+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~ 270 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE 270 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888753
No 268
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-28 Score=210.14 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=115.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++++|+++.|++. .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|... .
T Consensus 1 l~~~~l~~~~~~~-~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTFAYDPG-RP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEEEeCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence 4688999999631 22 5699999999999999999999999999999999997 99999 5666321 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH---------HHHhhccC----CCCCCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQ----GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~l~----~~~~~~~lS~G~~q 215 (254)
...++ +.++... +. .++.+++.+.. .. ........ .++.+..+ ...++..||+||+|
T Consensus 75 ~~i~~-~~q~~~~-~~--~tv~~nl~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 75 RAIGV-VPQDTVL-FN--DTIGYNIRYGR-----PD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred hhEEE-ECCCChh-hc--chHHHHHhhcC-----CC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 22444 4444332 22 46666554321 11 11111222 22222111 23456799999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998853
No 269
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=2.7e-28 Score=235.91 Aligned_cols=166 Identities=14% Similarity=0.041 Sum_probs=121.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
|.+|+++||++.|++.. +++|+||+|++|+++||+||||||||||+|+|+|++. |++|+ .++++. ..+.
T Consensus 1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~ 70 (635)
T PRK11147 1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR 70 (635)
T ss_pred CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence 45899999999998733 5699999999999999999999999999999999987 99999 455421 1222
Q ss_pred EeeCCCCCCCCcCCChhhcH------------------------------HHHHH---HcC-CCCCccHHHHHHHHHhhc
Q 025366 154 VLPMDGFHLYLSQLDAMEDP------------------------------KEAHA---RRG-APWTFNPLLLLNCLKNLR 199 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~------------------------------~~~~~---~~g-~~~~~~~~~~~~~l~~l~ 199 (254)
+.+.... ....++.+.. ..... .+. .........+.++++.++
T Consensus 71 -l~q~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 147 (635)
T PRK11147 71 -LQQDPPR--NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG 147 (635)
T ss_pred -eccCCCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence 2221110 0001111111 00000 000 001112345678888888
Q ss_pred cCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 200 l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..+.++..|||||+|||++|++|+.+|+||||||||++||+.+++.+.++|.+
T Consensus 148 l~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 148 LDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred CCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence 877888899999999999999999999999999999999999999999998853
No 270
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=1.4e-28 Score=237.79 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=128.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
.-++++||+++|+.... .+|+|+||+|++||.+||+|+||||||||+|+|+|++. |+.|+ .+||...
T Consensus 470 g~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~ 544 (709)
T COG2274 470 GEIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544 (709)
T ss_pred ceEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHH
Confidence 35899999999988533 35699999999999999999999999999999999998 99999 7787321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc---------cCCCCCC----CCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~~~~~----~~lS~G~ 213 (254)
+...|+ +.++++.+.. ++.||+.. +.|.. +.+.+.++++.-+ ++.+..+ ..|||||
T Consensus 545 lR~~ig~-V~Q~~~Lf~g---SI~eNi~l-----~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 545 LRRQVGY-VLQDPFLFSG---SIRENIAL-----GNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred HHhheeE-EcccchhhcC---cHHHHHhc-----CCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 455675 8888876653 67776643 33332 2344444444333 3333333 4699999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||+..+|+||||||||++||+.+.+.+.+.+++
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=1.1e-28 Score=196.13 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=95.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (254)
++++|+++.|++. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ |.+
T Consensus 1 l~~~~l~~~~~~~--~--~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~ 59 (144)
T cd03221 1 IELENLSKTYGGK--L--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGI--------------VTW 59 (144)
T ss_pred CEEEEEEEEECCc--e--EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceE--------------EEE
Confidence 4688999999863 2 6699999999999999999999999999999999995 55554 333
Q ss_pred CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366 158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 236 (254)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~ 236 (254)
++.. ..++ ++ ||+||+||+++|++++.+|+++|+|||+
T Consensus 60 ~~~~-----------------~i~~~~~------------------------lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 60 GSTV-----------------KIGYFEQ------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCeE-----------------EEEEEcc------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3210 0111 11 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhc
Q 025366 237 LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 237 ~~lD~~~~~~l~~ll~~ 253 (254)
++||+..+..+.+++.+
T Consensus 99 ~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 99 NHLDLESIEALEEALKE 115 (144)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999998864
No 272
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4e-29 Score=209.78 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=123.5
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
++++|+++||+..|+++. +|+|+|++|++||-++|+||||||||||+++++|... |++|. .+.|+..
T Consensus 28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET 100 (257)
T ss_pred CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence 457899999999999954 5699999999999999999999999999999999995 88877 3333211
Q ss_pred ----CCCeEEEeeCCCCCCCCcCCChhhcHHH-HHHHcCCCC-C---ccHHHHHHHHHhhccC--CCCCCCCCChhhhhh
Q 025366 148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPW-T---FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP 216 (254)
Q Consensus 148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~-~~~~~g~~~-~---~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr 216 (254)
+..+|. +.-.-...+....++.+-+.- .....|+.+ . .+......+++.+++. .+++...||-||+||
T Consensus 101 ~~elrk~IG~-vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 101 IFELRKRIGL-VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hHHHHHHhCc-cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 122232 110000000111122221100 111233332 2 2345567778877776 678889999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.||||++.+|++||||||+.|||...++.+.+.|++
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~ 216 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE 216 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998865
No 273
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=2.8e-28 Score=206.36 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=112.6
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC---------
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------- 148 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------- 148 (254)
.+.++.+.|+.. .. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .+++....
T Consensus 2 ~~~~~~~~~~~~-~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 75 (218)
T cd03290 2 QVTNGYFSWGSG-LA--TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS 75 (218)
T ss_pred eeeeeEEecCCC-Cc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence 467899999753 22 6699999999999999999999999999999999997 99999 56653210
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG 212 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G 212 (254)
...++ +.++... +. .++.+++.... . ........+++.+++. ...++..||+|
T Consensus 76 ~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G 144 (218)
T cd03290 76 RNRYSVAY-AAQKPWL-LN--ATVEENITFGS-----P--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG 144 (218)
T ss_pred hhcceEEE-EcCCCcc-cc--ccHHHHHhhcC-----c--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence 12333 4444432 22 46666654321 1 1122223344433321 13467899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
|+||+++|++++.+|++||+||||++||+..++.+.+
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence 9999999999999999999999999999999998877
No 274
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-28 Score=231.84 Aligned_cols=164 Identities=18% Similarity=0.168 Sum_probs=128.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
-.|+++||++.|+.++ .+.+++|+||+|++||++||+||||+||||++++|..++. |++|+ .+||...
T Consensus 464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY 539 (716)
T ss_pred ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence 4699999999999864 4557899999999999999999999999999999999998 99999 7888532
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHH---------hhccCCCCC----CCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~~----~~~lS~G~ 213 (254)
+..+|. |.|+.-.+. -++.||+.+ |.+ ..+.+++..+.+ ++-.+.+.. -.+|||||
T Consensus 540 lr~~Ig~-V~QEPvLFs---~sI~eNI~Y-----G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 540 LRRKIGL-VGQEPVLFS---GSIRENIAY-----GLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHHHeee-eeccceeec---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 234564 677665443 377888754 443 333444443333 333333333 34899999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+||||||+.+|.||||||.|+.||.++...+.+.++.
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999888863
No 275
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3.2e-28 Score=235.37 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=128.0
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (254)
-.+|+++||++.|++.. +++++||+|++|+++||+||||||||||+++|+|+++ |++|++..+. ....|+
T Consensus 317 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--~~~i~y- 386 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGT--KLEVAY- 386 (635)
T ss_pred CceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECC--CcEEEE-
Confidence 35799999999998733 5699999999999999999999999999999999997 9999943243 123555
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++...+ .+.+++.+++..... ..........+.++++.+++. .+.++..||||||||+++|++++.+|++||
T Consensus 387 ~~q~~~~l-~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 387 FDQHRAEL-DPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred EeCccccc-CCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55543222 223677777654221 111011134567788887774 367788999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+.+++.+.+++.+
T Consensus 464 LDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 276
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.96 E-value=1.4e-28 Score=212.31 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=118.7
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------C
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------P 149 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------~ 149 (254)
+++||++. . +|+++||++++|++++|+|+||||||||+++|+|++ |.+|+ .++|.... .
T Consensus 2 ~~~~l~~~--~------~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~ 69 (248)
T PRK03695 2 QLNDVAVS--T------RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR 69 (248)
T ss_pred cccccchh--c------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence 46677764 1 569999999999999999999999999999999998 56899 66664321 1
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC--
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL-- 225 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~-- 225 (254)
..++ +.++...+. .+++.+++.+... .+.........+.++++.+++. .+..+..||+||+||+++|+|++.
T Consensus 70 ~i~~-v~q~~~~~~--~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~ 145 (248)
T PRK03695 70 HRAY-LSQQQTPPF--AMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145 (248)
T ss_pred heEE-ecccCccCC--CccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 2344 455432222 2577776654311 1111112234567888888775 366788999999999999999986
Q ss_pred -----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 -----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 -----~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++||+||||++||+..++.+.+++.+
T Consensus 146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~ 178 (248)
T PRK03695 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178 (248)
T ss_pred cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 6799999999999999999999998864
No 277
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.7e-29 Score=212.36 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=122.8
Q ss_pred eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------CCeEEEeeCCCCCCCC
Q 025366 93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------PDVATVLPMDGFHLYL 164 (254)
Q Consensus 93 ~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------~~~g~~i~~~~~~~~~ 164 (254)
.+.|+.|+||+|++|+++|++|+|||||||++|+|+|++. |++|. .+.|.... .+.+.+..+.-..++
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~W- 111 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWW- 111 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeee-
Confidence 4668899999999999999999999999999999999997 99998 55553221 112221111111111
Q ss_pred cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~ 242 (254)
++++.+........+.++.+.-.++...+.+.|++. .+.++..||-|||.|+.+|.+|+++|+||+|||||.+||..
T Consensus 112 -dlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~ 190 (325)
T COG4586 112 -DLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN 190 (325)
T ss_pred -echhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence 245666666666677777665566777788888887 67788899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 025366 243 VWKDVSSMFDE 253 (254)
Q Consensus 243 ~~~~l~~ll~~ 253 (254)
.+..+++++.+
T Consensus 191 aq~~ir~Flke 201 (325)
T COG4586 191 AQANIREFLKE 201 (325)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 278
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-28 Score=234.97 Aligned_cols=163 Identities=16% Similarity=0.071 Sum_probs=120.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (254)
||.++||++.|++.. +|+++||+|++|+++||+||||||||||+|+|+|++. |++|+ .+.+.. ..++ +
T Consensus 1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~-~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAW-V 69 (638)
T ss_pred CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEE-E
Confidence 488999999998743 5699999999999999999999999999999999987 99999 455431 2333 3
Q ss_pred eCCCCCCCCcCCChhhcHHH-----------------------HH---HHcC-CCCCccHHHHHHHHHhhccC---CCCC
Q 025366 156 PMDGFHLYLSQLDAMEDPKE-----------------------AH---ARRG-APWTFNPLLLLNCLKNLRNQ---GSVY 205 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~-----------------------~~---~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~ 205 (254)
.++..... .+..+.+.. .. .... .........+..+++.+++. .+.+
T Consensus 70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 43321111 121111100 00 0000 00111234567888888884 3678
Q ss_pred CCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 206 ~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..|||||+||+++|++|+.+|+||||||||++||+.+...+.++|.+
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999988854
No 279
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.5e-28 Score=206.36 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=125.9
Q ss_pred ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCC-CCCCCCcCCCh
Q 025366 92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMD-GFHLYLSQLDA 169 (254)
Q Consensus 92 ~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~-~~~~~~~~l~~ 169 (254)
..+.||+||||++++||.+||+|+||||||||+|+|+|.++ |++|+ .+.|++... +.+. |+ ++++|.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l-----i~lg~Gf---~pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL-----IELGAGF---DPELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh-----hhcccCC---Ccccch
Confidence 34668999999999999999999999999999999999998 99999 566654321 1111 22 233899
Q ss_pred hhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHH
Q 025366 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (254)
Q Consensus 170 ~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l 247 (254)
.+|+.+.....|+......+...++.+.-.++ .+.++..||.||+-|++++.|...+|++||+||..+..|+..+++.
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 99999998899987666777777777755554 6888999999999999999999999999999999999999998888
Q ss_pred HHHhhc
Q 025366 248 SSMFDE 253 (254)
Q Consensus 248 ~~ll~~ 253 (254)
.+.+.+
T Consensus 187 ~~rl~e 192 (249)
T COG1134 187 LERLNE 192 (249)
T ss_pred HHHHHH
Confidence 777654
No 280
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.7e-29 Score=203.48 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=129.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCC-----
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD----- 150 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~----- 150 (254)
|++++||+|.|++.. +++++|+++++|.+.+|+|||||||||||.+++.+++ +++|+ .++|......
T Consensus 1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence 588999999999844 6699999999999999999999999999999999997 88888 5666322110
Q ss_pred --eEEEeeCCCCCCCCcCCChhhcHHHHHH--HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 151 --VATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 151 --~g~~i~~~~~~~~~~~l~~~e~~~~~~~--~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
.-.++.+.... +..+|+.+...|.+- ..|-+...+...+.+.++.+.+. .+++..+|||||+||..+|..++
T Consensus 74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 11112222221 122566665554321 12223455667788899988887 67899999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+.|.++||||.+.||.....++++++.+
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHH
Confidence 99999999999999999999888887753
No 281
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-28 Score=236.76 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=123.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
.++|+++||++.|++.. +++++||+|.+|+++||+||||||||||+++|+|+++ |++|+ .+++. ...|+
T Consensus 310 ~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~igy 379 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLGY 379 (638)
T ss_pred CceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEEE
Confidence 35799999999998733 5699999999999999999999999999999999997 99999 44422 23454
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
+.++.........++.+++. ..........+.++++.+++. .+.++..|||||+||+++|++++.+|+||
T Consensus 380 -~~Q~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 380 -FAQHQLEFLRADESPLQHLA------RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred -ecCcchhhCCccchHHHHHH------HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 45432111111122222211 111122345677888888884 35678899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||||++||+.+++.+.++|.+
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~ 475 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALID 475 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998864
No 282
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.9e-29 Score=197.35 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=135.4
Q ss_pred ceEEEecceeeccccc---ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-e--cCCCCC--
Q 025366 76 PVVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S--FDSQVK-- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~---~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~--~~~~~~-- 147 (254)
..+.++|++|.|--.. -...+++++||+++.||+++|-||||+|||||+|+|.+.+. |++|+ . ..|+..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence 3588999999983211 23456799999999999999999999999999999999998 99999 2 333221
Q ss_pred ------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChh
Q 025366 148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHG 212 (254)
Q Consensus 148 ------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G 212 (254)
..+.|+ +++.-..+++ ....+-........|++......+...++..|.+.. ...+..||||
T Consensus 80 ~~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGG 156 (235)
T COG4778 80 VTAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG 156 (235)
T ss_pred hccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCc
Confidence 233454 4444333332 445555555555677776666677888999998874 5678899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhcC
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~~ 254 (254)
++|||.|||.++.+.+||+|||||+.||..++.-+.++|.++
T Consensus 157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
No 283
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=5.6e-28 Score=234.05 Aligned_cols=172 Identities=15% Similarity=0.132 Sum_probs=133.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++.|++......+++++||++++||+++|+|+||||||||+++|+|+++ |++|+ .++|....
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence 479999999999642111225699999999999999999999999999999999998 99999 67774321
Q ss_pred ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
...++ +.++...+. .+++.+++.+.....+...........++++.+++. .+..+..||+||+||+++|
T Consensus 80 ~~~~~~~~i~~-v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 80 LAQLRREHFGF-IFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HHHHHhccEEE-EeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence 23444 555543222 257788776644333433333344567888888776 3567789999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++++.+|++||+|||+.+||+.+++.+.+++.+
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~ 189 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQ 189 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 284
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=216.01 Aligned_cols=174 Identities=17% Similarity=0.216 Sum_probs=145.1
Q ss_pred cceEEEecceeecccc-------cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366 75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~-------~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~ 146 (254)
-+++++++|...|.-+ ...+.|++++||++++|+.+||+|.||||||||-+.|.+++ +..|+ .|+|+.
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~ 349 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD 349 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence 4689999999998432 22366889999999999999999999999999999999999 67799 677753
Q ss_pred CC----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC--CCCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366 147 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 211 (254)
Q Consensus 147 ~~----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~ 211 (254)
.. ...-.++++|.|--.++.+++.+-+.+.....+- .......++.++++.+++. .++|+++|||
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 21 1224568899887777778888877777766552 3344556778889999987 5789999999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||||++||||++.+|++++|||||+.||...+.++.+++.
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr 470 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR 470 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985
No 285
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=4.2e-28 Score=232.07 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=125.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
.++++++|+++.|++. .|+++||++++||+++|+||||||||||+|+|+|+++ |++|+ .++ ...++
T Consensus 338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y 404 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY 404 (590)
T ss_pred ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence 3579999999999762 3599999999999999999999999999999999997 99998 343 13444
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++.... ..+++.+++......++ ......++++.+++. .+.++.+|||||+|||++|++|+.+|++||
T Consensus 405 -~~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL 476 (590)
T PRK13409 405 -KPQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL 476 (590)
T ss_pred -ecccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45543222 23678877665322111 123456788888775 467889999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+.++..+.++|.+
T Consensus 477 LDEPt~~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 477 LDEPSAHLDVEQRLAVAKAIRR 498 (590)
T ss_pred EeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999998863
No 286
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.1e-28 Score=222.12 Aligned_cols=168 Identities=15% Similarity=0.122 Sum_probs=133.5
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
++.+++++++|.|++.. |+++|||+|++|||.+|+|.||||||||+++|.|+++ |++|+ .++|+...
T Consensus 2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR 74 (501)
T ss_pred CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence 46799999999999754 8999999999999999999999999999999999998 99999 67885432
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-C--CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g--~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
.-+|- +.|.-..++ .+|+.||+....... + +.......++.++.+..++. .+.++.+||-|+||||.|
T Consensus 75 dA~~~GIGM-VhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 75 DAIRLGIGM-VHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHcCCcE-Eeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 22342 444332223 279999886644321 1 12223345567777777765 677889999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.++|..++++|||||||+-|-|...+++.+++.
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~ 184 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILR 184 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999888775
No 287
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=5.2e-28 Score=236.01 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=127.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++||++.|++..+. +|+|+||++++|+.++|+|+||||||||+|+|+|++. |++|+ .++|...
T Consensus 451 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred eEEEEEEEEEcCCCCcc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence 58999999999643223 5699999999999999999999999999999999998 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (254)
+...+. +.++.+.+. -|+.||+.. +.+ .+.+++.++++..++. .+.. ...||||||
T Consensus 526 r~~i~~-v~Q~~~lf~---gTI~eNi~~-----~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 526 RRQLGV-VLQNGRLMS---GSIFENIAG-----GAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred HhccEE-EccCCccCc---ccHHHHHhc-----CCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 234565 788876554 377777654 222 3456666666665543 2222 347999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|++|||||||++||+.+.+++.+.+..
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988753
No 288
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=5e-28 Score=231.98 Aligned_cols=163 Identities=14% Similarity=0.105 Sum_probs=126.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++||++.|++..+. +++|+||++++|+.++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 341 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred eEEEEEEEEecCCCCCc--cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence 59999999999753222 5699999999999999999999999999999999998 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (254)
....++ ++++.+.+. -|+.+|+.+ +.+...+.+++.++++..++. .+.. ...|||||+
T Consensus 416 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 416 RNQVAL-VSQNVHLFN---DTIANNIAY-----ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred HhhceE-EccCceeec---chHHHHHhc-----CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 123454 788776554 367676643 223334556666666655432 2332 256999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||+..+|+|||+||||++||+.+...+.+.+.+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887753
No 289
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=6.3e-28 Score=211.05 Aligned_cols=159 Identities=14% Similarity=0.191 Sum_probs=119.4
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
|+++||++.|.+.... +|+++||+|++|++++|+|+||||||||+++|+|++ +++|+ .++|... +
T Consensus 3 i~~~nls~~~~~~~~~--~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred EEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence 7899999999532122 679999999999999999999999999999999998 67899 6676322 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCC-----------CCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~-----------~~lS~G~~q 215 (254)
...++ +.++...+ . .++.+|+.. ++ ....+.+.++++.+++.. +..+ ..||+||+|
T Consensus 77 ~~i~~-v~q~~~lf-~--~tv~~nl~~----~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 77 KAFGV-IPQKVFIF-S--GTFRKNLDP----YG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred hhEEE-ECCCcccc-h--hhHHHHhhh----cc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 23443 55554322 2 255555532 11 123455667777776642 2222 249999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+|++.+|+|||+||||++||+..++.+.++|.+
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~ 183 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ 183 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988864
No 290
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=1e-27 Score=207.93 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=116.8
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
.+..++++++++.|++.... +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKP--VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPL 90 (257)
T ss_pred CCceEEEEEEEEEeCCCCCc--ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCH
Confidence 35679999999999762112 6799999999999999999999999999999999997 99999 6666322
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHH---------HHhh--ccC--CCCCCCCCCh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNL--RNQ--GSVYAPSFDH 211 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---------l~~l--~l~--~~~~~~~lS~ 211 (254)
....++ +.++.. ++. .++.++.. .........+... ++.+ ++. .......||+
T Consensus 91 ~~~~~~i~~-v~q~~~-l~~--~tv~~nl~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~ 159 (257)
T cd03288 91 HTLRSRLSI-ILQDPI-LFS--GSIRFNLD-------PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV 159 (257)
T ss_pred HHHhhhEEE-ECCCCc-ccc--cHHHHhcC-------cCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH
Confidence 122343 444432 221 24433321 1111111122222 2222 111 2234578999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+++|+|++.+|++||+||||++||+..++.+.+++++
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 201 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT 201 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864
No 291
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=8.5e-28 Score=207.19 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=106.6
Q ss_pred ccceeeee-----CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChh
Q 025366 97 TSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170 (254)
Q Consensus 97 l~~vsl~i-----~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~ 170 (254)
+.+++|++ ++|++++|+||||||||||+++|+|+++ |++|+ .+++. ..++ +.++....+ ..++.
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~-~~q~~~~~~--~~tv~ 79 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSY-KPQYIKADY--EGTVR 79 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEE-ecccccCCC--CCCHH
Confidence 35566655 4799999999999999999999999997 99999 55553 2343 444322111 25777
Q ss_pred hcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (254)
Q Consensus 171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~ 248 (254)
+++.......+ .......++++.+++. .+..+..||+||+||+++|++|+.+|+++|+||||++||+..+..+.
T Consensus 80 e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~ 155 (246)
T cd03237 80 DLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155 (246)
T ss_pred HHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 76644322111 1122345677777765 45678899999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 025366 249 SMFDE 253 (254)
Q Consensus 249 ~ll~~ 253 (254)
++|.+
T Consensus 156 ~~l~~ 160 (246)
T cd03237 156 KVIRR 160 (246)
T ss_pred HHHHH
Confidence 88754
No 292
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.7e-28 Score=227.96 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=121.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++|+++||++.|. . +++++||++++|+++||+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 249 ~~i~~~~l~~~~~----~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 249 VILEVRNLTSLRQ----P--SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE 319 (491)
T ss_pred cEEEEeCcccccC----c--ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence 4799999999852 2 6799999999999999999999999999999999997 99999 56663221
Q ss_pred ---CCeEEEeeCCCC--CCCCcCCChhhc-----HHHHHHHcCC-CCCccHHHHHHHHHhhccC---CCCCCCCCChhhh
Q 025366 149 ---PDVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (254)
Q Consensus 149 ---~~~g~~i~~~~~--~~~~~~l~~~e~-----~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~ 214 (254)
...++ +.++.. .++ +.++..++ +......++. ..........++++.+++. .+.++.+|||||+
T Consensus 320 ~~~~~i~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 320 AINHGFAL-VTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHCCCEE-cCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 11333 444321 111 12343333 1111111121 1111234456778877773 4678889999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|+||||||||++||+.+++.+.+++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~ 436 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE 436 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998853
No 293
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.7e-28 Score=196.49 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=133.4
Q ss_pred cceEEEecceeeccccc-----ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-
Q 025366 75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~-----~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~- 147 (254)
|++++++|++|.|.... ..+.|++.|||++++|+.++|+|.||||||||.|+|+|.+. |++|+ .++++..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 67899999999985521 34568899999999999999999999999999999999998 99999 6776532
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv 217 (254)
+.....+|.+|...-.++.+.+..-+....+..- +.......++.+.+..+++. .+.++..+|-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 2334456777766555444443332222222211 22222234556667777765 5788999999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
++||||+.+|+|||.||..++||...+-++.+++-
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L 193 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLML 193 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 294
>PLN03211 ABC transporter G-25; Provisional
Probab=99.95 E-value=5.2e-28 Score=234.03 Aligned_cols=164 Identities=14% Similarity=0.100 Sum_probs=127.6
Q ss_pred EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Cce-ecCCCCC----CCCe
Q 025366 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQVK----PPDV 151 (254)
Q Consensus 79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~--~G~-~~~~~~~----~~~~ 151 (254)
.++++++.|+++. +|+|+|+++++||++||+||||||||||+++|+|+++ |+ +|+ .++|... ....
T Consensus 70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 3567889998743 6699999999999999999999999999999999986 64 899 6777432 2234
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC----ccHHHHHHHHHhhccCC-------CCCCCCCChhhhhhHhhh
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~----~~~~~~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~ia 220 (254)
++ +.+++.... .+++.|++.+.... ..+.. .....+.++++.+++.. +..+..||||||||+++|
T Consensus 143 ~y-v~Q~~~l~~--~lTV~E~l~~~a~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 143 GF-VTQDDILYP--HLTVRETLVFCSLL-RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred EE-ECcccccCC--cCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 54 666654433 27899988775432 22211 12244677888888753 335678999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+.+|+|||+||||++||...+..+.+++.+
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~ 251 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGS 251 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998863
No 295
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=7.7e-28 Score=235.62 Aligned_cols=163 Identities=20% Similarity=0.165 Sum_probs=127.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..|+++||++.|++..+. +|+|+||++++|+.++|+|+||||||||+++|+|++. |++|+ .++|...
T Consensus 476 ~~I~~~~vsf~y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~ 550 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREV 550 (710)
T ss_pred CeEEEEEEEEecCCCCCC--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHH
Confidence 358999999999863233 5699999999999999999999999999999999998 99999 6777422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~ 213 (254)
+...++ +.++.+.+. -++.+|+.. +.+ ..+.+++.++++..++. .+. ....|||||
T Consensus 551 lr~~i~~-v~Q~~~lf~---gTi~eNi~l-----~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 551 LANSVAM-VDQDIFLFE---GTVRDNLTL-----WDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred HHhheeE-EecCChhhh---ccHHHHhhC-----CCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 234565 788876554 377776643 212 23456666666655442 222 235799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||++.+|++|||||||++||+...+++.+.+.+
T Consensus 621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
No 296
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=6.8e-28 Score=227.37 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=125.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++++++||++ . +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~ 323 (501)
T PRK10762 256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD 323 (501)
T ss_pred cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence 5799999984 1 5699999999999999999999999999999999997 99999 5666321
Q ss_pred --CCCeEEEeeCCCC--CCCCcCCChhhcHHHHHH-Hc----C-CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhh
Q 025366 148 --PPDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 214 (254)
Q Consensus 148 --~~~~g~~i~~~~~--~~~~~~l~~~e~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~ 214 (254)
....++ +.++.. .+. ..+++.+++.+... .. + .........+.++++.+++. .+.++..|||||+
T Consensus 324 ~~~~~i~~-v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 324 GLANGIVY-ISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHCCCEE-ecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 123455 555531 121 23677777754321 11 1 11111234567888888883 4677889999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 440 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864
No 297
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.3e-28 Score=192.05 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=129.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC---CCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD---SQV---- 146 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~---~~~---- 146 (254)
.|++++.+++|.|+... ..++|||++.+||+.||+|.||||||||+++|++.+. |+.|+ .+. ++.
T Consensus 4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence 46899999999999865 6799999999999999999999999999999999998 99999 332 221
Q ss_pred ----------CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCC---CCCCCCCChh
Q 025366 147 ----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHG 212 (254)
Q Consensus 147 ----------~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G 212 (254)
.+.++|. +.++..+-.+...++-.|+-+.....|. -.........+.++.+.+.. +-.+..||||
T Consensus 77 ~msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 77 TMSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hhchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 1345665 5655443333223444444443333332 11123455677888887763 4567899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|+||+.||+.++..|+++++||||.|||...+..+.+++.
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllr 195 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999998874
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7e-28 Score=227.31 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=123.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
+.+++++++.. . +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|+...
T Consensus 256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD 324 (501)
T ss_pred cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence 46899999732 1 5699999999999999999999999999999999997 99999 56664221
Q ss_pred ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHc----CC--CCCccHHHHHHHHHhhccC---CCCCCCCCChhhhh
Q 025366 149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (254)
Q Consensus 149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (254)
...++ +.++.. ......+++.+++.+..... +. ..........++++.+++. .+.++..|||||||
T Consensus 325 ~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 325 AIRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHhCCCEE-cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 22343 455421 01112257777765422111 10 1111224567888888873 46778899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|++++.+|+||||||||++||+.+++++.++|++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 441 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 299
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.95 E-value=1.5e-27 Score=226.25 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=125.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++||++.|++..+. +++|+||++++|+.++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 320 ~i~~~~v~f~y~~~~~~--il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred eEEEEEEEEECCCCCcc--cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence 59999999999763223 5699999999999999999999999999999999998 99999 6676432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (254)
+...+. +.++.+.+. .++.+|+.+. .+ ....+.+.++++..++. .+. ....||||||
T Consensus 395 r~~i~~-v~Q~~~lf~---~ti~~Ni~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~ 464 (529)
T TIGR02857 395 RDQIAW-VPQHPFLFA---GTIAENIRLA-----RP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQA 464 (529)
T ss_pred HhheEE-EcCCCcccC---cCHHHHHhcc-----CC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHH
Confidence 123454 777765443 4777776542 12 12345555666555442 222 3457999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|+++|+||||++||+...+.+.+.+.+
T Consensus 465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754
No 300
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2.2e-28 Score=241.86 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=127.5
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||.++|+.++ .+.+|+++||.|++|+.++|+|||||||||++++|.+++. |++|+ .+||...
T Consensus 349 g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred cceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHH
Confidence 3699999999999864 4557899999999999999999999999999999999998 99999 6787542
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHH---------hhccCCCC----CCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----YAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~----~~~~lS~G~ 213 (254)
+..+|. |.+....+. .++.||+.+ |-+. ...+++.++.+ .+-.+.+. .-.+|||||
T Consensus 425 lr~~igl-V~QePvlF~---~tI~eNI~~-----G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ 494 (1228)
T KOG0055|consen 425 LRSQIGL-VSQEPVLFA---TTIRENIRY-----GKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ 494 (1228)
T ss_pred HHhhcCe-eeechhhhc---ccHHHHHhc-----CCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence 345665 677663332 577887754 3322 22333333332 22222222 234699999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||++|||||+.+|+||||||||++||+.+.+.+.+.||.
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~ 534 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK 534 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 301
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=7.8e-28 Score=203.20 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=106.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-e-cCCCCCCCCeEEEeeCCCCCCCCcCCChhhcH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP 173 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~-~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~ 173 (254)
+++|+||++++|++++|+||||||||||+++|+|+++ |++|+ . +++.... +..... ..+.+++.+++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~~------~~~~~~--l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDALP------LGANSF--ILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCceec------cccccc--cCCcCcHHHHH
Confidence 5799999999999999999999999999999999997 99998 3 4443211 111111 12236888888
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
.+....++.... .....+.+.+++. .+..+..||+||+||+++|++++.+|+++|+|||++++|+..++.+.+++
T Consensus 71 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l 147 (213)
T PRK15177 71 RMMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL 147 (213)
T ss_pred HHHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence 776554443211 1111222323332 46678899999999999999999999999999999999999999988866
Q ss_pred h
Q 025366 252 D 252 (254)
Q Consensus 252 ~ 252 (254)
.
T Consensus 148 ~ 148 (213)
T PRK15177 148 A 148 (213)
T ss_pred H
Confidence 3
No 302
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=9.1e-28 Score=229.91 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=127.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++..+. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 337 ~~i~~~~v~f~y~~~~~~--il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~ 411 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA 411 (574)
T ss_pred CeEEEEEEEEECCCCCCc--ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence 359999999999753223 5699999999999999999999999999999999998 99999 6776422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--------CC----CCCCCChhhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG 214 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--------~~----~~~~lS~G~~ 214 (254)
+...+. +.++.+.+. -+..+|+.+. .+ ..+.+.+.++++..++.. +. ....||||||
T Consensus 412 ~r~~i~~-v~Q~~~lf~---~ti~~Ni~~~-----~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 412 LRQAISV-VSQRVHLFS---ATLRDNLLLA-----AP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHhheeE-Ecccchhhc---ccHHHHhhcC-----CC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 123454 777765443 3666666432 22 234566777777766542 11 2357999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|++||+||||++||+.+.+.+.+.+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988753
No 303
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.95 E-value=2.2e-27 Score=201.73 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=110.3
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~ 177 (254)
|++++|++++|+|+||||||||+++|+|+++ |++|+ .++|... ....++ +.++........+++.+++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGY-VPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEE-ecccccccCCCCccHHHHHHhcc
Confidence 5788999999999999999999999999997 99999 6777532 223454 55543322211246666664421
Q ss_pred HH-cCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 178 AR-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 178 ~~-~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
.. .+. ........+.++++.+++. .+..+..||+||+||+++|++++.+|++||+||||++||+.+++.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11 111 1112234567788888776 35677899999999999999999999999999999999999999999988
Q ss_pred hc
Q 025366 252 DE 253 (254)
Q Consensus 252 ~~ 253 (254)
.+
T Consensus 157 ~~ 158 (223)
T TIGR03771 157 IE 158 (223)
T ss_pred HH
Confidence 63
No 304
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=2.1e-27 Score=227.91 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=123.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
-++++||++.|.+. +. +|+|+||++++|+.++|+|+||||||||+++|+|++ |++|+ .++|...
T Consensus 349 ~i~~~~vsf~~~~~-~~--vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 349 TIEAEDLEILSPDG-KT--LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred eEEEEeeEEeccCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence 49999999766432 23 569999999999999999999999999999999998 88999 6777322
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCC----CCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~ 214 (254)
+...++ ++++.+.+. -|+.+|+.+. .+ +.+.+++.++++..++ +.+.. -..||||||
T Consensus 422 r~~i~~-v~Q~~~LF~---~TI~eNI~~g-----~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 422 RKHLSW-VGQNPQLPH---GTLRDNVLLG-----NP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HhheEE-ecCCCcCCC---cCHHHHhhcC-----CC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 223454 788876554 4777777542 12 2345556555555443 23333 346999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|+||||||||++||..+.+.+.+.+.+
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887753
No 305
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=2e-27 Score=232.66 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=125.0
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||++.|++. +. +|+|+||++++|+.++|+|+||||||||+++|+|++. |++|+ .++|...
T Consensus 473 ~I~~~~vsf~y~~~-~~--iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 473 DIVINDVSYSYGYG-SN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred cEEEEEEEEEcCCC-Cc--ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence 58999999999742 23 5699999999999999999999999999999999998 99999 6777321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (254)
+...++ +.++.+.+. -|+.+|+.+. .....+.+++.++++..++ +.+. ....||||||
T Consensus 547 r~~i~~-v~Q~~~lf~---gTI~eNi~l~-----~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 547 RQFINY-LPQEPYIFS---GSILENLLLG-----AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHheEE-EecCceehh---HHHHHHHhcc-----CCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 234565 788876544 3677776542 1112344555555554443 2232 2357999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||+++|||++.+|++|||||||++||+.+.+.+.+.+.
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~ 655 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL 655 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988775
No 306
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=2.1e-27 Score=224.46 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=121.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++|+++ . +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .+++....
T Consensus 267 ~~l~~~~l~~---~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 267 PVLTVEDLTG---E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred ceEEEeCCCC---C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence 4799999983 1 4699999999999999999999999999999999997 99999 56664221
Q ss_pred ---CCeEEEeeCCC--CCCCCcCCChhhcHHHHH-HHcCC--CCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366 149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEAH-ARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV 217 (254)
Q Consensus 149 ---~~~g~~i~~~~--~~~~~~~l~~~e~~~~~~-~~~g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv 217 (254)
...++ +.++. ..++ ..+++.++..... ..... ........+.++++.+++. .+.++..||||||||+
T Consensus 335 ~~~~~i~~-v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 335 RLARGLVY-LPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred HHhCCcEE-CCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence 12343 44432 1122 1246666653211 11111 1111223467888888874 3677889999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|++++.+|+||||||||++||+.+++.+.++|.+
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence 999999999999999999999999999999998864
No 307
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.95 E-value=2.2e-27 Score=231.82 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=126.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..|+++||++.|++..+. +|+|+||++++|+.++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 462 ~~I~~~~vsf~Y~~~~~~--vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~ 536 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPAD 536 (694)
T ss_pred ceEEEEEEEEEeCCCCcc--ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence 358999999999753223 5699999999999999999999999999999999998 99999 6776322
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~ 213 (254)
+...++ +.++.+.+. -|+.+|+.+. .+ ..+.+++.++++..++. .+. ....|||||
T Consensus 537 lr~~i~~-v~Q~~~lf~---~TI~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 537 LRRNIGY-VPQDPRLFY---GTLRDNIALG-----AP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred HHhccEE-ECCChhhhh---hhHHHHHhCC-----CC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 234554 777776543 3677766432 12 23455666666655432 222 234799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||++.+|+++||||||++||+.+.+++.+.+.+
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888753
No 308
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=195.83 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=119.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---C----
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---P---- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~---- 148 (254)
||+++||++...++. ++++++|++.+||+++|+||||||||||+|.|+|.+. |++|+ .++|... +
T Consensus 1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence 588999999998844 5699999999999999999999999999999999997 99999 5565322 1
Q ss_pred -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC--ccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...+. ..++...-+. .++.|-+...+.-.+.... .+..-...++...++. ..+....||||++|||.+||.|
T Consensus 74 A~~raV-lpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 74 ARHRAV-LPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHhhh-cccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 11232 4444322222 3666655544332222222 2222356666666554 4566789999999999999998
Q ss_pred c------CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 224 G------LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 224 ~------~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+ .++++|+|||||+.||...+..+.++..
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 4 2335899999999999999988877653
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.6e-27 Score=195.56 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=90.2
Q ss_pred ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCC
Q 025366 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (254)
Q Consensus 81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~ 160 (254)
.||++.|++.. +++++ |++++|++++|+||||||||||+|+|+|+++ |++|+ |.+++.
T Consensus 4 ~~l~~~~~~~~----~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~--------------i~~~g~ 61 (177)
T cd03222 4 PDCVKRYGVFF----LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDN--------------DEWDGI 61 (177)
T ss_pred CCeEEEECCEE----EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcE--------------EEECCE
Confidence 58899998743 45774 9999999999999999999999999999996 66665 222221
Q ss_pred CCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCC
Q 025366 161 HLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (254)
Q Consensus 161 ~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~l 239 (254)
.+ ++ ++... ||+||+||+++|++++.+|+++|+||||++|
T Consensus 62 ~i------------------~~~~q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 62 TP------------------VYKPQYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred EE------------------EEEcccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 00 00 11000 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhc
Q 025366 240 DGGVWKDVSSMFDE 253 (254)
Q Consensus 240 D~~~~~~l~~ll~~ 253 (254)
|+..++.+.+++.+
T Consensus 103 D~~~~~~l~~~l~~ 116 (177)
T cd03222 103 DIEQRLNAARAIRR 116 (177)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888753
No 310
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.95 E-value=3.2e-27 Score=225.90 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=125.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
-++++||++.|++..+. +++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 330 ~i~~~~v~f~y~~~~~~--il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRP--ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred eEEEEEEEEEcCCCCCc--cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence 58999999999763233 5699999999999999999999999999999999998 99999 6666321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (254)
....++ ++++.+.+. -+..+|+.. +.+.+.+.+++.++++.+++. .+.. -..||||||
T Consensus 405 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 405 RRQVAL-VSQDVVLFN---DTIANNIAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HhhceE-EccCccccc---ccHHHHHhc-----CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 123444 777776543 366666543 212234556666666665542 2222 246999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++||+++.+|+|+||||||++||+.+.+.+.+.|..
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887753
No 311
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=3.1e-27 Score=226.96 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=125.7
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++++++.|++. +. +++|+||++++|+.++|+|+||||||||+++|+|++. |++|+ .++|...
T Consensus 340 ~i~~~~v~f~y~~~-~~--il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NL--VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred eEEEEEEEEEeCCC-Cc--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence 48999999999752 22 5699999999999999999999999999999999998 99999 6777422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (254)
....+. ++++.+.+. -|+.+|+.+.. ..+.+++.++++.+++. .+. ....|||||+
T Consensus 414 ~~~i~~-v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 414 RQGVAM-VQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred HhheEE-EccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 233454 788876554 37777775421 23455666666665543 222 2346999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||+++|||++.+|+|||+||||++||+.+.+.+.+.+.
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~ 520 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA 520 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988775
No 312
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.95 E-value=3.6e-27 Score=228.71 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=124.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
.+++++||++.|++. +. +++++||++++|++++|+||||||||||+++|+|+++ |+.|+ .+++ ....+.
T Consensus 450 ~~i~~~nv~~~~~~~-~~--il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~- 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNG-DV--LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY- 519 (659)
T ss_pred CeEEEEeeEEECCCC-Ce--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE-
Confidence 469999999999642 22 5699999999999999999999999999999999987 88898 4432 233454
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCC--C---------CCCCCChhhhhhHhhhhh
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGS--V---------YAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~--~---------~~~~lS~G~~qrv~ia~a 222 (254)
+.++.+... .++.+++.+.....+. ......+.+.++++.+++... . +...||||||||+++||+
T Consensus 520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa 596 (659)
T TIGR00954 520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL 596 (659)
T ss_pred ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence 666654332 3777776542211111 112234566777877776421 1 236899999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|+++||||||++||+...+.+.+++.+
T Consensus 597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
No 313
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=4.7e-27 Score=229.98 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=123.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++..+ ..+|+|+||++++|+.++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 477 ~~I~~~nVsf~Y~~~~~-~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPD-VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CeEEEEEEEEECCCCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 35999999999975321 225699999999999999999999999999999999998 99999 6777432
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~ 213 (254)
....+. +.++.+.+. -++.+|+.+ +.+ ..+.+++.++++..++. .+.. ...|||||
T Consensus 553 lr~~i~~-v~Q~~~lF~---gTIreNI~~-----g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 622 (711)
T TIGR00958 553 LHRQVAL-VGQEPVLFS---GSVRENIAY-----GLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622 (711)
T ss_pred HHhhceE-EecCccccc---cCHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence 234454 788876554 477777643 222 22345566666655432 2222 34799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
|||+++|||++.+|+|+||||||++||+...+.+.+
T Consensus 623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence 999999999999999999999999999999888877
No 314
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=8.8e-27 Score=226.95 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=122.5
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee-cCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~~ 154 (254)
++++++||++.|++. .. +++++||+|++|++++|+||||||||||+|+|+|+++ |++|++ +.+ ....|+
T Consensus 507 ~~L~~~~ls~~y~~~-~~--il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy- 576 (718)
T PLN03073 507 PIISFSDASFGYPGG-PL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV- 576 (718)
T ss_pred ceEEEEeeEEEeCCC-Ce--eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE-
Confidence 579999999999642 12 5699999999999999999999999999999999997 999994 433 223454
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++... .++..++....... ..+ ......+.++++.+++. ...++..|||||+||+++|++++.+|++||
T Consensus 577 v~Q~~~~----~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL 650 (718)
T PLN03073 577 FSQHHVD----GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL 650 (718)
T ss_pred Eeccccc----cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 5554211 12333332211111 111 12345677889988885 356788999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhh
Q 025366 232 VDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||||++||+.+++.+.+.+.
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~ 671 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLV 671 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999988775
No 315
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=5.8e-27 Score=223.10 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=120.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++|+++.|++..+. +++|+||++++|+.++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 316 ~i~~~~v~~~y~~~~~~--~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKP--TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred eEEEEEEEEEcCCCCcc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence 59999999999753223 5699999999999999999999999999999999997 99999 6676322
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHH---------hhccCCC----CCCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~----~~~~~lS~G~~ 214 (254)
+...++ +.++.+.+. -+..+|+... . ...+.+.+.+.++ .+..+.+ .....|||||+
T Consensus 391 ~~~i~~-v~q~~~lf~---~ti~~Ni~~~----~--~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 391 GKHIGY-LPQDVELFP---GTVAENIARF----G--ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred hhheEE-ecCCccccc---ccHHHHHhcc----C--CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 123444 667655433 3666665421 1 1123334433333 3322222 23567999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||+++|||++.+|++||+||||++||+...+.+.+.+.
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988775
No 316
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.95 E-value=6.9e-27 Score=207.65 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=139.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC------Cce-ecCCCCC
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ------KAS-SFDSQVK 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~------~G~-~~~~~~~ 147 (254)
+++++++||+..|+.....+.++++|||++++||.++|+|.||||||-.++.|++++ |. +|+ .|+|...
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhh
Confidence 678999999999986556677889999999999999999999999999999999999 55 345 5666421
Q ss_pred -----------CCCeEEEeeCCCCCCCCcCCChhhcHHH-HHHHcCCCCCccHHHHHHHHHhhccC-----CCCCCCCCC
Q 025366 148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFD 210 (254)
Q Consensus 148 -----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~-~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS 210 (254)
+.....+|++....-.++-.++...+.+ .....|+.......+..++++.+++. .+.|+++||
T Consensus 80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 2333445666654433333344333333 23345666666778889999999986 467999999
Q ss_pred hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+|||.||.|++.+|++||.||||+.||...+.+|.+++.+
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~ 202 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE 202 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999864
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.94 E-value=4.1e-27 Score=224.24 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=118.9
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++||++.|++. +. +++|+||++++|+.++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 322 ~i~~~~v~f~y~~~-~~--~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 322 TLELRNVTFAYQDN-GF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred eEEEEEEEEEeCCC-Ce--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence 59999999999752 22 5699999999999999999999999999999999998 99999 6666432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCC-------CCCCChhhhhhHhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVGDPVEDD 220 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~-------~~~lS~G~~qrv~ia 220 (254)
+...+. +.++.+.+. .+..++ + ...+.+.+.+.++.+++..... ...|||||+||+++|
T Consensus 396 ~~~i~~-v~q~~~lf~---~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 396 RKLFSA-VFTDFHLFD---QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL 461 (547)
T ss_pred hhheEE-EecChhHHH---Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence 123343 566554322 122222 1 1233455667777776654321 347999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||++.+|++||+||||++||+...+.+.+.+.
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998877653
No 318
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=9.7e-27 Score=223.27 Aligned_cols=162 Identities=16% Similarity=0.105 Sum_probs=121.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++. +. +++|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 333 ~~i~~~~v~~~y~~~-~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 333 GAVEFRHITFEFANS-SQ--GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRES 406 (585)
T ss_pred CeEEEEEEEEECCCC-Cc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHH
Confidence 359999999999752 22 5699999999999999999999999999999999998 99999 6666321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CC----CCCCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~----~~~~~~lS~G~ 213 (254)
+...+. +.++.+.+. .+..+|+.+. .+. ...+++.+.++..++ +. ......|||||
T Consensus 407 ~~~~i~~-v~q~~~lf~---~ti~~Ni~~~-----~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq 476 (585)
T TIGR01192 407 LRKSIAT-VFQDAGLFN---RSIRENIRLG-----REG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476 (585)
T ss_pred HHhheEE-EccCCccCc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHH
Confidence 123444 677765443 4677766432 121 223333333332221 11 23356799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||++.+|++||+||||++||+.+.+.+.+.+++
T Consensus 477 ~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~ 516 (585)
T TIGR01192 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516 (585)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 319
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=7.9e-27 Score=224.04 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=123.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++||++.|++. +. +++|+||++++|++++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence 58999999999752 22 5699999999999999999999999999999999998 99999 6776321
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (254)
+...++ ++++.+.+. -|..+|+.+. .+ ..+.+++..+++.+++ +.+. ....|||||+
T Consensus 408 r~~i~~-v~Q~~~lf~---~Ti~~Ni~~~-----~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 408 RRNIAV-VFQDAGLFN---RSIEDNIRVG-----RP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred HhheEE-EecCccccc---ccHHHHHhcC-----CC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 233454 778776543 3677766432 12 2234445555554433 2222 2346999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||+++|||++.+|+|+||||||++||+...+.+.+.+.
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~ 515 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988775
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=2.9e-26 Score=201.21 Aligned_cols=151 Identities=10% Similarity=0.069 Sum_probs=109.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
.+.|+++|+++. .. . +++++||++++|++++|+|+||||||||+++|+|+++ |++|+ .++| ..++
T Consensus 37 ~~~l~i~nls~~--~~--~--vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y 102 (282)
T cd03291 37 DNNLFFSNLCLV--GA--P--VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF 102 (282)
T ss_pred CCeEEEEEEEEe--cc--c--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence 457999999985 22 2 6799999999999999999999999999999999997 99999 5554 2444
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhhhhhHhhh
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~qrv~ia 220 (254)
+.++.+. +. .++.+++.+.. .. ........++.+++ . ....+..||+||+||+++|
T Consensus 103 -v~q~~~l-~~--~tv~enl~~~~-----~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA 171 (282)
T cd03291 103 -SSQFSWI-MP--GTIKENIIFGV-----SY--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171 (282)
T ss_pred -EeCcccc-cc--cCHHHHhhccc-----cc--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence 5555432 22 25656554311 00 01111222222211 1 1123568999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~l 250 (254)
++++.+|++||+||||++||+..++.+.+.
T Consensus 172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 999999999999999999999999988764
No 321
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=1.5e-26 Score=221.32 Aligned_cols=162 Identities=14% Similarity=0.181 Sum_probs=122.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++++++.|+...+. +++++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 313 ~I~~~~v~~~y~~~~~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHP--ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred cEEEEEEEEECCCCCCc--cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence 48999999999753222 5699999999999999999999999999999999998 99999 6666422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CC----CCCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~ 214 (254)
+...+. +.++.+.+. -++.+|+.+ +.+ ....+.+..+++..++. .+ .....|||||+
T Consensus 388 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~ 457 (569)
T PRK10789 388 RSRLAV-VSQTPFLFS---DTVANNIAL-----GRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457 (569)
T ss_pred HhheEE-EccCCeecc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 123444 666654433 366676643 212 23344555555544332 12 23457999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|+++|+||||++||+...+.+.+.+..
T Consensus 458 qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~ 496 (569)
T PRK10789 458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496 (569)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753
No 322
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=1.2e-26 Score=226.68 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=124.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++..+. +++|+||++++|+.++|+|+||||||||+++|+|++. |++|+ .++|...
T Consensus 454 ~~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHH
Confidence 359999999999753223 5699999999999999999999999999999999998 99999 6777432
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~ 213 (254)
+...++ +.++.+.+. -++.+|+.. +.+ ..+.+.+.++++..++ +.+. ....|||||
T Consensus 529 ~r~~i~~-v~q~~~lf~---~ti~eNi~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 529 LRRQMGV-VLQENVLFS---RSIRDNIAL-----CNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred HHHhCeE-EccCCeehh---hhHHHHHhc-----CCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 223454 777765443 366676643 212 2334455555554432 2222 345799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|||++.+|++||+||||++||+.+.+++.+.+.+
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 323
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-26 Score=213.14 Aligned_cols=159 Identities=16% Similarity=0.156 Sum_probs=127.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||++.|++.. ++ |+++||+|++||-|||+|+|||||||++|+|.++. -++|+ .++|...
T Consensus 351 ~I~F~dV~f~y~~k~-~i--L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKR-KV--LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred cEEEEeeEEEeCCCC-ce--ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence 399999999999742 34 59999999999999999999999999999999999 79999 7888432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---------C----CCCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---------~----~~~~~lS~G~~ 214 (254)
+..+|. ++||...+. -|+..|+. +|.+.. ..+++.+..++.+++. . -.-..||||||
T Consensus 424 R~~Ig~-VPQd~~LFn---dTIl~NI~-----YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 424 RQSIGV-VPQDSVLFN---DTILYNIK-----YGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred hhheeE-eCCcccccc---hhHHHHhh-----cCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 344565 899886554 26666653 454432 3566777777776641 1 12347999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||++++||++.+|+|+++||||+.||.+.-+++.+++.
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~ 531 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM 531 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999988874
No 324
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=2.1e-26 Score=220.56 Aligned_cols=163 Identities=20% Similarity=0.192 Sum_probs=123.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|+.... ..+++|+||++++||.++|+|+||||||||+++|+|+++ |++|+ .++|...
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence 45899999999975211 125699999999999999999999999999999999998 99999 6676321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~ 213 (254)
....++ ++++.+.+. -+..+|+.+ +.+. .+.+++.++++..++. .+. ....|||||
T Consensus 412 ~~~~i~~-~~Q~~~lf~---~Ti~~Ni~~-----~~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 412 LRARMAL-VPQDPVLFA---ASVMENIRY-----GRPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred HHHhceE-EccCCcccc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 123454 777766544 367776643 2222 2345565666655432 222 234699999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+||+++|||+..+|+++|+||||++||+...+.+.+.+.
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887764
No 325
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=4e-26 Score=214.39 Aligned_cols=165 Identities=15% Similarity=0.060 Sum_probs=120.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
|.+|.++++++.|+++. +++++||++.+|+.|||+|+||||||||||+|+|.+. |+.|+ ...+. ...++
T Consensus 1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 56899999999998844 5699999999999999999999999999999999997 99998 33321 23444
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHH-----------HH------------------cC-CCCCccHHHHHHHHHhhccCC-
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAH-----------AR------------------RG-APWTFNPLLLLNCLKNLRNQG- 202 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~-----------~~------------------~g-~~~~~~~~~~~~~l~~l~l~~- 202 (254)
+.++...... .++.+.+.... .. +. +.......++..++..+++..
T Consensus 71 -l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 71 -LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred -eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 5555432211 23322111100 00 00 000011234566666676665
Q ss_pred CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+.++..||||||.|+++|++|..+||+|||||||+.||..+..-+.++|.
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~ 197 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK 197 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 68889999999999999999999999999999999999999888888774
No 326
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.6e-27 Score=190.48 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=130.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
+++++++|++.|+++. |++++||++.+||.-+|+|||||||||++.+|+|..+ |+.|+ .+++...
T Consensus 4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence 5799999999999976 8999999999999999999999999999999999997 99999 6777321
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-C-------CCCccHHHHHHHHHhhccCC--CCCCCCCChhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-------PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG 214 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~-------~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~ 214 (254)
+.-+|.-++-. .++ ..+++++|++....... + .......++.++|+.+++.. +.....||+|||
T Consensus 77 ~IAr~GIGRKFQ~P--tVf-e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 77 RIARAGIGRKFQKP--TVF-ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHHhccCccccCC--eeh-hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 11123211111 112 23789999877653211 1 12233457788999888874 556678999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|++.|+..++.+|++|++|||++|+-....++..++|.
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~ 191 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999888888777764
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=2.4e-26 Score=199.08 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=111.3
Q ss_pred ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------------cCCCCCC
Q 025366 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP 148 (254)
Q Consensus 81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------------~~~~~~~ 148 (254)
.+|+++|++.. .+++++++ +++|++++|+||||||||||+++|+|+++ |++|++ ++|....
T Consensus 4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence 47899997531 26799995 99999999999999999999999999997 999984 3342210
Q ss_pred C----------CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhh
Q 025366 149 P----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP 216 (254)
Q Consensus 149 ~----------~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qr 216 (254)
. ..+. +.+. .... + .+..+++... +..........++++.+++.. +..+..||+||+||
T Consensus 77 ~~~~~~~~~~~~i~~-~~~~-~~~~-~-~~~~~~i~~~-----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 77 NYFTKLLEGDVKVIV-KPQY-VDLI-P-KAVKGKVGEL-----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147 (255)
T ss_pred hhhHHhhhcccceee-ecch-hccC-c-hHHHHHHHHH-----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 0 0111 1111 0100 0 1122222211 111122355678888887753 56777999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~ 184 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888753
No 328
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.8e-26 Score=211.52 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=124.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~ 148 (254)
++.+++++.|++.. + ++.|+||++++|+.++|+|+||||||||+++|+|+.+ |+.|+ .++|... .
T Consensus 321 i~~~~l~~~y~~g~-~--~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 321 ISLENLSFRYPDGK-P--ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred eeecceEEecCCCC-c--ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence 45569999998853 2 6799999999999999999999999999999999997 89999 5666322 1
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--------CCCCCC----CCChhhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSVYAP----SFDHGVGDP 216 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--------~~~~~~----~lS~G~~qr 216 (254)
.+.. +|.++++.+.. +..||+.+.. + +...+.+.++++..++. .+..+. .+||||+||
T Consensus 395 k~i~-~v~Q~p~lf~g---TireNi~l~~-----~-~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 395 KQIS-WVSQNPYLFAG---TIRENILLAR-----P-DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred hHee-eeCCCCccccc---cHHHHhhccC-----C-cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence 2334 47888776553 6677664422 2 23456666777766553 233333 499999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+++|||+..+++++|+||||+.||.++.+.|.+.+.
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~ 500 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQ 500 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence 999999999999999999999999999998888764
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.94 E-value=2.2e-26 Score=219.53 Aligned_cols=159 Identities=14% Similarity=-0.002 Sum_probs=118.1
Q ss_pred ceEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
..++++||++.|++... ...+|+|+||++++|++++|+||||||||||+++|+|++. |++|+ .++|....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 35899999999976310 1125699999999999999999999999999999999997 99999 66664321
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCC--------CCCCCChhhhhhH
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV--------YAPSFDHGVGDPV 217 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~--------~~~~lS~G~~qrv 217 (254)
...+. +.++.+.+. -+..+|. ......+.+.++++.+++.... ....||||||||+
T Consensus 413 ~~~~~i~~-v~q~~~lf~---~ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 413 DYRDLFSA-IFADFHLFD---DLIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred HHHhhCcE-EccChhhhh---hhhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 22333 555543222 1222221 1123445667777777665321 1357999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~l 250 (254)
++|||++.+|+++|+||||++||+...+.+.+.
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~ 512 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEE 512 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 999999999999999999999999999998763
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=3.3e-26 Score=236.48 Aligned_cols=175 Identities=12% Similarity=0.088 Sum_probs=131.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCC
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD 150 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~ 150 (254)
.+++++||++.|+.......+|+|||+++++|++++|+||||||||||+++|+|+++...|++|+ .++|... +..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 36899999999963212223679999999999999999999999999999999998422257799 6777432 233
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcC---CCCCccHHHHHHHHHhhccC--CCCCCC----CCChhhhhhHhhhh
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDI 221 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~----~lS~G~~qrv~ia~ 221 (254)
.++ +.+++..+. .+++.|++.+...... .........+.++++.+++. .+..+. .||+|||||++||+
T Consensus 838 i~y-v~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 838 IGY-VQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred eee-ecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 455 666654333 3799999887554331 11112234567888888775 344444 79999999999999
Q ss_pred hhcCCCc-EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~-vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|+.+|+ ||+|||||++||......+.+++.+
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~ 947 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK 947 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 9999997 9999999999999999999998864
No 331
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=5.1e-27 Score=224.46 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=124.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
.-++++||++.|++. +. +++|+||++++|+.+||+||||||||||+++|++++. |++|+ .+||...
T Consensus 327 ~~I~f~~vsf~y~~~-~~--vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 327 GSIEFENVSFSYPGK-KP--VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CeEEEEEEEEEcCCC-Cc--cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 349999999999841 22 6699999999999999999999999999999999998 99999 5677322
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc---------cCCCCCC----CCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~~~~~----~~lS~G~ 213 (254)
+...+ +++|+.+.+. -|+.+|+.+ |.++ ...+++.++++... .+.+..+ ..|||||
T Consensus 401 lr~~I~-~V~Qd~~LF~---~TI~~NI~~-----g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ 470 (567)
T COG1132 401 LRKRIG-IVSQDPLLFS---GTIRENIAL-----GRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470 (567)
T ss_pred HHHhcc-EEcccceeec---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence 34456 4787776554 377777654 3222 23344444444332 1233333 4799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||+++|||++.+|++|||||||+.+|..+...+.+.++
T Consensus 471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 999999999999999999999999999999999988875
No 332
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=212.35 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=123.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CC---
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP--- 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~--- 149 (254)
.++++||+++|++.. ..+|+|+||++++||.++|+|++|||||||+.+|+|... |++|+ .+.|... ++
T Consensus 336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence 799999999999844 336699999999999999999999999999999999997 99999 4554221 11
Q ss_pred -CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---------C----CCCCCCChhhhh
Q 025366 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVGD 215 (254)
Q Consensus 150 -~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---------~----~~~~~lS~G~~q 215 (254)
+...++.+....+. -|..+|+.. +.+. ...+.+.++++.+++.. + -.-..|||||+|
T Consensus 411 ~e~i~vl~Qr~hlF~---~Tlr~NL~l-----A~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 411 RETISVLTQRVHLFS---GTLRDNLRL-----ANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHhhhccchHHHH---HHHHHHHhh-----cCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 01112333332221 244444422 2233 45677788888887641 1 223479999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++||++.++.+++||||||.|||+...+++.+++.+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999865
No 333
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.8e-27 Score=198.19 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=125.6
Q ss_pred cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC------------CC
Q 025366 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------------KP 148 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~------------~~ 148 (254)
|+.+.+|++. -+++|..+..-+++|.|+||||||||+|+|+|+++ |+.|. .++|.+ .+
T Consensus 5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~ 75 (352)
T COG4148 5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK 75 (352)
T ss_pred ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence 5666777643 57899998778999999999999999999999998 99999 555532 13
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ 226 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~ 226 (254)
...|+ +++|...++. +++..|+.+..... ....+..+.+.|+++ .++++..||||+||||+|+|||...
T Consensus 76 RriGY-VFQDARLFpH--~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~ 146 (352)
T COG4148 76 RRIGY-VFQDARLFPH--YTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred heeee-Eeeccccccc--eEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence 45676 7777765544 78888886644321 445677888888887 6889999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 227 HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 227 p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++|++|||.+.||.+-+++++-+++.
T Consensus 147 P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 147 PELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred CCeeeecCchhhcccchhhHHHHHHHH
Confidence 999999999999999999999988753
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=6.6e-26 Score=234.77 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=124.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--------------------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-------------------- 136 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-------------------- 136 (254)
-|+++||++.|++... ..+|+|+||++++|+.+||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~~-~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPN-VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred eEEEEEEEEECCCCCC-CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence 5999999999975321 226799999999999999999999999999999999997 6
Q ss_pred ----------------------------------CCce-ecCCCCC--------CCCeEEEeeCCCCCCCCcCCChhhcH
Q 025366 137 ----------------------------------QKAS-SFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP 173 (254)
Q Consensus 137 ----------------------------------~~G~-~~~~~~~--------~~~~g~~i~~~~~~~~~~~l~~~e~~ 173 (254)
++|+ .++|... +...+. |.|+.+.+. .|+.||+
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~-V~Qep~LF~---gTIreNI 1316 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI-VSQEPMLFN---MSIYENI 1316 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE-eCCCCcccc---ccHHHHH
Confidence 5788 5666321 233454 777766543 4778877
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCCC----CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 174 KEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD 240 (254)
.+. .+ ....+.+.++++..++ +.+..+ ..||||||||++|||||+.+|+||||||||+.||
T Consensus 1317 ~~g-----~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1317 KFG-----KE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred hcC-----CC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 553 22 2234555555554433 233333 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 025366 241 GGVWKDVSSMFDE 253 (254)
Q Consensus 241 ~~~~~~l~~ll~~ 253 (254)
..+.+.|.+.|+.
T Consensus 1391 ~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1391 SNSEKLIEKTIVD 1403 (1466)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888753
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=5.8e-26 Score=235.17 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=126.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ec-CCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~-~~~~~------- 147 (254)
.|+++||++.|+... ...+|+|+||++++|++++|+||||||||||+++|+|++. |++|+ .+ ++...
T Consensus 382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence 599999999998632 1236799999999999999999999999999999999998 99999 56 44321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-C-------C------------------------------------
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------A------------------------------------ 182 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g-------~------------------------------------ 182 (254)
+...|. +.++...+. .++.+|+.+..... + .
T Consensus 458 lr~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 458 WRSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 123454 677654432 47888886632100 0 0
Q ss_pred -------CCCccHHHHHHHHHhhccC---------C----CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366 183 -------PWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 183 -------~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~ 242 (254)
......+.+.++++.+++. . ......||||||||++||||++.+|+||||||||++||+.
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 0012234556666555432 1 2345689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 025366 243 VWKDVSSMFDE 253 (254)
Q Consensus 243 ~~~~l~~ll~~ 253 (254)
..+.+.+.|++
T Consensus 614 se~~i~~~L~~ 624 (1466)
T PTZ00265 614 SEYLVQKTINN 624 (1466)
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.6e-26 Score=183.30 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=95.2
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCC
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~ 159 (254)
++++++.|.+. . +++++||++++|++++|+|+||||||||+++|+|+++ |+. |. +.+++
T Consensus 2 ~~~~~~~~~~~--~--~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~-------------G~-i~~~~ 60 (157)
T cd00267 2 IENLSFRYGGR--T--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTS-------------GE-ILIDG 60 (157)
T ss_pred eEEEEEEeCCe--e--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCc-------------cE-EEECC
Confidence 57889999763 2 6699999999999999999999999999999999985 444 44 44444
Q ss_pred CCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCC
Q 025366 160 FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238 (254)
Q Consensus 160 ~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~ 238 (254)
..... ... .......++ ++ ||+||+||++++++++.+|+++|+||||++
T Consensus 61 ~~~~~-----~~~-~~~~~~i~~~~q------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 61 KDIAK-----LPL-EELRRRIGYVPQ------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred EEccc-----CCH-HHHHhceEEEee------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 32210 000 111112222 21 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhc
Q 025366 239 LDGGVWKDVSSMFDE 253 (254)
Q Consensus 239 lD~~~~~~l~~ll~~ 253 (254)
||..++..+.+++.+
T Consensus 111 lD~~~~~~l~~~l~~ 125 (157)
T cd00267 111 LDPASRERLLELLRE 125 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988753
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=6e-26 Score=217.26 Aligned_cols=156 Identities=15% Similarity=0.049 Sum_probs=112.6
Q ss_pred cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------------cCCCCCC-
Q 025366 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP- 148 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------------~~~~~~~- 148 (254)
+++++|+.. . .+|++++ .+++|+++||+||||||||||+|+|+|+++ |+.|++ ++|....
T Consensus 78 ~~~~~yg~~--~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~ 150 (590)
T PRK13409 78 EPVHRYGVN--G-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN 150 (590)
T ss_pred CceEEecCC--c-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence 389999862 1 2679999 899999999999999999999999999997 999984 4443210
Q ss_pred ---------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhH
Q 025366 149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV 217 (254)
Q Consensus 149 ---------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv 217 (254)
...+..+............++.+++.. ......+.++++.+++. .+..+..|||||+||+
T Consensus 151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---------VDERGKLDEVVERLGLENILDRDISELSGGELQRV 221 (590)
T ss_pred HHHHHhccCcceeecccchhhhhhhhcchHHHHHHh---------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 011110100000000000133333221 01234567788888875 4778899999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||++++.+|++|||||||++||+..+..+.++|.+
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~ 257 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE 257 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998864
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=1.2e-25 Score=219.09 Aligned_cols=161 Identities=13% Similarity=0.040 Sum_probs=112.2
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeE
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA 152 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g 152 (254)
.+.+|+++|+++.|++.. +|+|+||+|.+|+++||+|+||||||||||+|+|......|..|+ .+..+...
T Consensus 174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~---- 245 (718)
T PLN03073 174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV---- 245 (718)
T ss_pred CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC----
Confidence 456899999999998643 569999999999999999999999999999999964111266665 22111000
Q ss_pred EEeeCCCCCCCCcCCChhh--------------------------------------------------cHHHHHHHcCC
Q 025366 153 TVLPMDGFHLYLSQLDAME--------------------------------------------------DPKEAHARRGA 182 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e--------------------------------------------------~~~~~~~~~g~ 182 (254)
+ ...++.+ ........++.
T Consensus 246 ------g-----~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 314 (718)
T PLN03073 246 ------G-----DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLEL 314 (718)
T ss_pred ------C-----CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHh
Confidence 0 0011100 00011111111
Q ss_pred CCC-ccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 183 PWT-FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 183 ~~~-~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
... ....++..++..+++. .+.++..|||||+||++||++|+.+|++|||||||++||+..+..+.++|.+
T Consensus 315 ~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred cCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 111 1123445566666664 3567889999999999999999999999999999999999999999998864
No 339
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=1.3e-25 Score=183.97 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=90.4
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+++++||++++|++++|+||||||||||+|+|.+ ++|+ +.+.+.. +...
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~--------------v~~~~~~------~~~~---- 58 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGK--------------ARLISFL------PKFS---- 58 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCc--------------EEECCcc------cccc----
Confidence 6799999999999999999999999999998842 3443 1122210 0000
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC--CcEEEEeCCCCCCCHHHHHHHHHH
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSM 250 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~--p~vlIlDEp~~~lD~~~~~~l~~l 250 (254)
.....+.. . .++++.+++. .+.++..||+||+||+++|++++.+ |+++|+|||+++||+..++.+.++
T Consensus 59 -~~~~~~~~----q--~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~ 131 (176)
T cd03238 59 -RNKLIFID----Q--LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV 131 (176)
T ss_pred -cccEEEEh----H--HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00011100 0 4567777764 4567889999999999999999999 999999999999999999999988
Q ss_pred hhc
Q 025366 251 FDE 253 (254)
Q Consensus 251 l~~ 253 (254)
+.+
T Consensus 132 l~~ 134 (176)
T cd03238 132 IKG 134 (176)
T ss_pred HHH
Confidence 753
No 340
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=6.1e-26 Score=177.56 Aligned_cols=167 Identities=14% Similarity=0.066 Sum_probs=130.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (254)
++.++||+.+.++.. .|.++||+|.+|||+.|+||||||||||+..+.|.+...+...|+ .++++.. ..
T Consensus 2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 467889998888754 569999999999999999999999999999999999866777898 5555321 34
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..|. +.+|...++. +++.+|+.+.... .+............++..++. ....+.++|||||.|+++-|+++.+|
T Consensus 78 q~Gi-LFQD~lLFph--lsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P 153 (213)
T COG4136 78 QIGI-LFQDALLFPH--LSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP 153 (213)
T ss_pred heee-eecccccccc--cccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence 4564 6777655443 7888887553211 011112334567788888876 46778899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
+.+++||||+-||...+.+++++.
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999888865
No 341
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=1.3e-25 Score=222.31 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=129.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
-|+++||++.|+.+ ..+.+++|+||++++|+.+||+|||||||||.+.+|-.++. |+.|. .+||...
T Consensus 987 ~I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 48999999999976 46778899999999999999999999999999999999998 99999 7787532
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHh---------hccCCCCCC----CCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~l~~~~~~----~~lS~G~~ 214 (254)
+...+. |.|..-.+. -|..||+.+. ... ...+++.+.++. |-.+.+..+ .+||||||
T Consensus 1063 R~~i~l-VsQEP~LF~---~TIrENI~YG-----~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1063 RKQIGL-VSQEPVLFN---GTIRENIAYG-----SEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred HHhcce-eccCchhhc---ccHHHHHhcc-----CCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 334554 666654433 4788888664 111 233444444443 333445444 48999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||++||||++++|+||||||.|+.||.++-+.+.+.||.
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999885
No 342
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=208.73 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=127.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (254)
-.+++++|+++.|++. +. +++++||.|.+|+.|||+||||+|||||+|+|+|.+. |.+|++..|. ....|+
T Consensus 319 ~~vl~~~~~~~~y~~~-~~--l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~--~v~igy- 389 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGE--TVKIGY- 389 (530)
T ss_pred CeeEEEeccccccCCC-ce--eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCC--ceEEEE-
Confidence 4689999999999774 23 4599999999999999999999999999999999997 8899854443 233455
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++...+. ...++.+.+.. .. + ......+...+..+++. ...++..||||||.|+.+|+.+..+|.|||
T Consensus 390 f~Q~~~~l~-~~~t~~d~l~~---~~--~-~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi 462 (530)
T COG0488 390 FDQHRDELD-PDKTVLEELSE---GF--P-DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL 462 (530)
T ss_pred EEehhhhcC-ccCcHHHHHHh---hC--c-cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence 565553332 22344443322 11 1 12257788999999987 356788999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhh
Q 025366 232 VDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||||+.||..+.+.+.+.|.
T Consensus 463 LDEPTNhLDi~s~~aLe~aL~ 483 (530)
T COG0488 463 LDEPTNHLDIESLEALEEALL 483 (530)
T ss_pred EcCCCccCCHHHHHHHHHHHH
Confidence 999999999999999988875
No 343
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=224.14 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=144.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
...+.+++++|.|+.... |++++++.|++||+.|++|+|||||||++++|+|..+ |++|+ .+.|...
T Consensus 562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF 635 (885)
T ss_pred cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence 467899999999998543 7899999999999999999999999999999999998 99999 5555322
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....|+ .++.+-... .+|..|+..+..+..|+++......+..+++.+++. .+..++.||||+|+|+.+|.|
T Consensus 636 ~~~~~~iGy-CPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 636 QQVRKQLGY-CPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred hhhhhhccc-CCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence 223565 555544333 489999999999999998766666688899988886 567789999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|++++||||++|+||..++.+++++.+
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~ 743 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIAR 743 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999864
No 344
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=1.8e-25 Score=200.16 Aligned_cols=136 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred EECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366 112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (254)
Q Consensus 112 LiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (254)
|+||||||||||+++|+|+++ |++|+ .++|... ....+. +.++...++ .+++.+++.+.....+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~-v~q~~~l~~--~~tv~enl~~~~~~~~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINM-VFQSYALFP--HMTVEENVAFGLKMRKVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEE-EecCccccC--CCcHHHHHHHHHhhcCCCH
Confidence 689999999999999999997 99999 6666432 123454 555543222 3688898877654333322
Q ss_pred CccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 185 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 185 ~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
......+.++++.+++. .+.++.+||+||+||+++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~ 145 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT 145 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 22234567788888776 4677889999999999999999999999999999999999999999988854
No 345
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.6e-25 Score=181.61 Aligned_cols=173 Identities=20% Similarity=0.141 Sum_probs=122.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+++++||...-++. +. +|++|||+|++||+.+|+||||||||||.++|+|.-. --.++|+ .++|+..
T Consensus 1 m~~L~I~dLhv~v~~~-ke--ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 1 MMMLEIKDLHVEVEGK-KE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred CceeEEeeeEEEecCc-hh--hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCHh
Confidence 5689999999999874 13 5699999999999999999999999999999999852 2267898 7787542
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCC--CccHHHHHHHHHhhccCC---CCCCC-CCChhhhhhHhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPW--TFNPLLLLNCLKNLRNQG---SVYAP-SFDHGVGDPVED 219 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~--~~~~~~~~~~l~~l~l~~---~~~~~-~lS~G~~qrv~i 219 (254)
+...|.++.++.. ..-+.++..+.+..... ..+... ......+.+.++.+++.. ++++. -||||+|+|..+
T Consensus 77 ERAr~GifLafQ~P-~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYP-VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCC-ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 2344544433321 11122333333332221 122111 122345567777777763 44444 699999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+..++.+|++.|||||-+|||..+-+.+.+.+.
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~ 188 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence 999999999999999999999998888877664
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=5.1e-25 Score=229.40 Aligned_cols=161 Identities=15% Similarity=0.094 Sum_probs=126.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||+++|++..+. +|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+ .++|...
T Consensus 1234 ~I~f~nVsf~Y~~~~~~--vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred cEEEEEEEEEECCCCCc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence 59999999999653223 5699999999999999999999999999999999998 99999 6787432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~ 214 (254)
+...+ +|+|+.+.+. -|+.+|+.. ....+.+++.++++..++. .+.. ...||||||
T Consensus 1309 R~~i~-iVpQdp~LF~---gTIr~NL~~-------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1309 RRVLS-IIPQSPVLFS---GTVRFNIDP-------FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred HhhcE-EECCCCeeeC---ccHHHHcCC-------CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 23345 4888876554 366666532 1234456666666655442 2222 347999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|+||||||||+.+|....+.|.+.+++
T Consensus 1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754
No 347
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.92 E-value=4e-25 Score=213.19 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=118.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCC-----CCCeEEEeeCCCCCCCCcC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ 166 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~ 166 (254)
+|+|+|+++++||+++|+||||||||||+++|+|... +. +|+ .++|... +...++ +.+++..+. .
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~y-v~Q~~~~~~--~ 113 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAY-VQQDDLFIP--T 113 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhcee-eccccccCc--c
Confidence 6699999999999999999999999999999999985 53 688 5676432 223465 677665443 3
Q ss_pred CChhhcHHHHHHHcCCCC----CccHHHHHHHHHhhccC--CCCCCC------CCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366 167 LDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG 234 (254)
Q Consensus 167 l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~~------~lS~G~~qrv~ia~al~~~p~vlIlDE 234 (254)
+|+.|++.+..... .+. ......+.++++.+++. .+..+. .+|||||||+.+|++|+.+|+++++||
T Consensus 114 lTV~e~l~f~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 79999998765432 222 22234578888888875 344443 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhc
Q 025366 235 NYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 235 p~~~lD~~~~~~l~~ll~~ 253 (254)
||++||+.....+.+.+++
T Consensus 193 PtsgLD~~~~~~l~~~L~~ 211 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKG 211 (617)
T ss_pred CCcchhHHHHHHHHHHHHH
Confidence 9999999999999988864
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=8.7e-25 Score=228.33 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=127.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||+++|++..+. +|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+ .+||...
T Consensus 1237 ~I~f~nVsf~Y~~~~~~--VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPP--VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred cEEEEEEEEEeCCCCCc--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence 59999999999753223 5699999999999999999999999999999999998 99999 6787422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCCC----CCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~ 214 (254)
+...+. |+|+.+.+. -|+.+|+... .....+.+.++++..++ +.+..+ ..||+|||
T Consensus 1312 R~~Isi-VpQdp~LF~---GTIreNLd~~-------~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1312 RKVLGI-IPQAPVLFS---GTVRFNLDPF-------NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred HhccEE-ECCCCcccc---ccHHHHhCcC-------CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 234454 888876554 3677766431 23345666666665544 233332 47999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++||||+.+|+||||||||+.+|....+.|.+.|++
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888764
No 349
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=9.6e-25 Score=227.56 Aligned_cols=161 Identities=11% Similarity=0.095 Sum_probs=127.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||+++|++... .+|+|+||+|++||.|||+|++|||||||+++|.|++. |++|+ .++|...
T Consensus 1308 ~I~f~nVsf~Y~~~~~--~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP--LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred eEEEEEEEEEeCCCCC--ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence 5999999999976322 25699999999999999999999999999999999998 99999 6787422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~ 214 (254)
+...+. |+++.+.+. -|+.+|+.. ....+.+.+.++++..++. .+..+ ..||+|||
T Consensus 1383 R~~I~i-VpQdp~LF~---gTIreNIdp-------~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1383 RRQFSM-IPQDPVLFD---GTVRQNVDP-------FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred HhcceE-ECCCCcccc---ccHHHHhCc-------ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 234454 888876554 367776632 1234556777777776653 22222 47999999
Q ss_pred hhHhhhhhhcCC-CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~-p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||++|||||+.+ |+||||||||+.+|....+.|.+.|++
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 999999999985 899999999999999999999888753
No 350
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.92 E-value=6.3e-26 Score=177.93 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=88.8
Q ss_pred ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------CCCeEEEeeCCCCCCCCcCC
Q 025366 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------PPDVATVLPMDGFHLYLSQL 167 (254)
Q Consensus 97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~~~~g~~i~~~~~~~~~~~l 167 (254)
|+|+||++++|++++|+|+||||||||+++|+|+.+ |++|+ .+++... ....++ +.++...... +
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~--~ 74 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGY-VPQDPQLFPG--L 74 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEE-EESSHCHHTT--S
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccc-cccccccccc--c
Confidence 589999999999999999999999999999999997 77777 4554221 122333 4444221111 2
Q ss_pred ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCC----CCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~----~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~ 237 (254)
++.++ ........+++.+++.. ... ...||+||+||+++|++++.+|++||+||||+
T Consensus 75 tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 75 TVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp BHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33332 22345666777766542 333 38999999999999999999999999999996
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3e-25 Score=182.93 Aligned_cols=172 Identities=17% Similarity=0.099 Sum_probs=129.2
Q ss_pred eEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
|+++.|+.+.|... .....++++++++|.+|+++.|+|.||||||||++.|+|.+. |++|+ .++|..+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence 35677888887542 223347799999999999999999999999999999999998 99999 66774321
Q ss_pred -C-CeEEEeeCCCCCCCCcCCChhhcHHHHHHH---cCCCCC---ccHHHHHHHHHhhccC----CCCCCCCCChhhhhh
Q 025366 149 -P-DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT---FNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDP 216 (254)
Q Consensus 149 -~-~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~---~g~~~~---~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qr 216 (254)
. .... |.+|...-..+.+|+.||+.....+ +|+... .....+.+-+..++++ ...++.-|||||||-
T Consensus 78 RA~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQa 156 (263)
T COG1101 78 RANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA 156 (263)
T ss_pred HhhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHH
Confidence 1 1122 5566554445568999998766543 333221 1223345566666665 456778899999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+.++.|...+|+||+|||.|+.|||...+.++++-+
T Consensus 157 lsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~ 192 (263)
T COG1101 157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTA 192 (263)
T ss_pred HHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHH
Confidence 999999999999999999999999999888887643
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=1.2e-24 Score=226.80 Aligned_cols=161 Identities=15% Similarity=0.059 Sum_probs=127.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||+++|+...+. +|+|+||+|++||.+||+|++|||||||+++|.|++. |++|+ .++|...
T Consensus 1284 ~I~f~nVsf~Y~~~~~~--vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDL--VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred cEEEEEEEEEeCCCCcc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence 59999999999763222 6799999999999999999999999999999999998 99999 6787422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~ 214 (254)
+...+. |+|+.+.+. -|+.+|+.. + .....+.+.++++..++. .+..+ ..||+|||
T Consensus 1359 R~~i~i-VpQdp~LF~---gTIr~NLdp----~---~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1359 RFKITI-IPQDPVLFS---GSLRMNLDP----F---SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred HhcCeE-ECCCCcccC---ccHHHHcCc----c---cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 234454 888876654 266666532 1 134456666777765542 23333 46999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|+||||||||+.+|....+.|.+.|++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.92 E-value=1.7e-24 Score=223.85 Aligned_cols=172 Identities=13% Similarity=0.054 Sum_probs=128.0
Q ss_pred eEEEecceeeccccc---------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366 77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV 146 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~---------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~ 146 (254)
.+..+||++..+... ....+|+|+|+.+++|++++|+||||||||||+++|+|+.. ..+.+|+ .++|..
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence 488999988874210 12236799999999999999999999999999999999863 1125788 566643
Q ss_pred CC-----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC----ccHHHHHHHHHhhccCC--CCCC-----CCCC
Q 025366 147 KP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG--SVYA-----PSFD 210 (254)
Q Consensus 147 ~~-----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~----~~~~~~~~~l~~l~l~~--~~~~-----~~lS 210 (254)
.. ...|+ +.+++...+ .+|+.|++.+..... .+.. .....+.++++.+++.. +..+ ..||
T Consensus 946 ~~~~~~~~~igy-v~Q~d~~~~--~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 946 KKQETFARISGY-CEQNDIHSP--QVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CChHHhhhheEE-EccccccCC--CCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 21 23455 666654433 379999988754322 2221 12234677888888752 3333 5899
Q ss_pred hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||||+.||++|+.+|+||+|||||++||+.....+.+++.+
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998854
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=3.5e-24 Score=223.00 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=126.7
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||+++|+...+. +|+|+||+|++|+.+||+|++|||||||+++|+|++ +.+|+ .++|...
T Consensus 1217 ~I~f~nVs~~Y~~~~~~--vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRA--VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred eEEEEEEEEEeCCCCcc--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence 59999999999753223 669999999999999999999999999999999998 57899 6777322
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~ 214 (254)
+...+ +|+++.+.+. -|+.+|+.. ......+.+.++++.+++. .+..+ ..||+|||
T Consensus 1291 R~~is-~IpQdp~LF~---GTIR~NLdp-------~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1291 RKAFG-VIPQKVFIFS---GTFRKNLDP-------YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HhceE-EEeCCCccCc---cCHHHHhCc-------ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 23345 4888887654 367776632 1234567777888876653 22222 36999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++||||+.+|+||||||||+++|....+.|.+.|.+
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=1.2e-23 Score=219.51 Aligned_cols=154 Identities=13% Similarity=0.113 Sum_probs=117.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL 155 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i 155 (254)
.++++|+++.|++..+. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++| ..++ +
T Consensus 636 ~i~~~~~~~~~~~~~~~--~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~y-v 704 (1522)
T TIGR00957 636 SITVHNATFTWARDLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAY-V 704 (1522)
T ss_pred cEEEEEeEEEcCCCCCc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEE-E
Confidence 69999999999753222 5699999999999999999999999999999999997 99999 4554 2454 6
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc------c---CC----CCCCCCCChhhhhhHhhhhh
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------N---QG----SVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~------l---~~----~~~~~~lS~G~~qrv~ia~a 222 (254)
.++.... + .++.+|+.+. .+ ++.+...++++... . +. ......||||||||+++|||
T Consensus 705 ~Q~~~l~-~--~Ti~eNI~~g-----~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 705 PQQAWIQ-N--DSLRENILFG-----KA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred cCCcccc-C--CcHHHHhhcC-----Cc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 6765432 2 4777776542 11 22233333333222 1 11 23456899999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
+..+|+++||||||++||+...+.+.+.+
T Consensus 775 l~~~~~illLDEp~saLD~~~~~~i~~~l 803 (1522)
T TIGR00957 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHV 803 (1522)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999998776
No 356
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.7e-23 Score=200.97 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=133.2
Q ss_pred eEEEecceeeccccc-ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CC
Q 025366 77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~-~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~ 149 (254)
.+..++++....+.. ....+|++|+..+++||+.||+||+|||||||+++|+|....-...+|+ .++|+.. +.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 356667666665431 1122569999999999999999999999999999999998521246788 6777332 33
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC----CccHHHHHHHHHhhccC--CCCCC-----CCCChhhhhhHh
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVE 218 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~-----~~lS~G~~qrv~ 218 (254)
..|+ +.||+..++. +|+.|.+.+.... ..+. ....+++.++++.+++. .+..+ ..+|||||+||+
T Consensus 105 ~s~y-V~QdD~l~~~--LTV~EtL~f~A~l-rlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 105 ISGY-VQQDDVLLPT--LTVRETLRFSALL-RLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred eeEE-Eccccccccc--ccHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence 4565 8888876655 8999998876543 3444 34456778899998886 34444 469999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|..++.+|.||++||||+|||.....++.+++++
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~ 215 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKR 215 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999988864
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.90 E-value=8.5e-24 Score=218.72 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=116.5
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCce-ecCCCCC-------CCCeEEEeeCCCCCCCCcC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQ 166 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~-~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~ 166 (254)
+|+|+|+.+++||+++|+||||||||||+|+|+|+... ..|++|+ .++|... +...++ +.+++..++ .
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y-v~Q~d~~~~--~ 152 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY-NAETDVHFP--H 152 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE-eccccccCC--C
Confidence 67999999999999999999999999999999998621 1268999 6666421 122454 666654443 3
Q ss_pred CChhhcHHHHHHHcCC---CCCcc----HHH-HHHHHHhhccCC-------CCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 167 LDAMEDPKEAHARRGA---PWTFN----PLL-LLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 167 l~~~e~~~~~~~~~g~---~~~~~----~~~-~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+++.|++.+......- ..... ... ...+++.+++.. +..+..+||||||||.||++|+.+|+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 8999998876543210 00111 112 245678787753 22456899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||||++||+....++.++|.+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~ 254 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKT 254 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 358
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2.4e-23 Score=177.38 Aligned_cols=154 Identities=14% Similarity=0.032 Sum_probs=93.0
Q ss_pred ccccceeeeeCCCeEEEEECCCCCcHHHHH-HHHHHhhc-----ccCCCCceecCCCCCCC--------CeEEEeeCCCC
Q 025366 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRIN-----KIWPQKASSFDSQVKPP--------DVATVLPMDGF 160 (254)
Q Consensus 95 lal~~vsl~i~~GeivgLiGpNGsGKSTLl-k~L~Gll~-----~~~p~~G~~~~~~~~~~--------~~g~~i~~~~~ 160 (254)
.+++++||++++||++||+|+||||||||+ ..|...-+ ..-+..+.. .+....+ .... ..++..
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 86 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQF-LGQMDKPDVDSIEGLSPAI-AIDQKT 86 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhh-hcccCccccccccCCCceE-EecCCC
Confidence 377999999999999999999999999996 33331100 000000000 0000000 1111 112221
Q ss_pred CCCCcCCChh---hcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEE
Q 025366 161 HLYLSQLDAM---EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIV 232 (254)
Q Consensus 161 ~~~~~~l~~~---e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIl 232 (254)
....+..++. +...+... +..........+.++.+++. .+.++.+||+||+||+++|++++.+| ++||+
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRL---LFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1111111211 11111111 11111122335678888775 46688899999999999999999998 59999
Q ss_pred eCCCCCCCHHHHHHHHHHhhc
Q 025366 233 DGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 233 DEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||++||+..+..+.++|.+
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~ 184 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKR 184 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999998853
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.90 E-value=9.1e-24 Score=192.35 Aligned_cols=162 Identities=16% Similarity=0.115 Sum_probs=121.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------- 146 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-------- 146 (254)
..+.++++...=.+.++. +++++||++.+|+.+||+||||||||||.|+|.|..+ |.+|. .+||-.
T Consensus 333 g~L~Ve~l~~~PPg~~~p--il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 333 GALSVERLTAAPPGQKKP--ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred ceeeEeeeeecCCCCCCc--ceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHH
Confidence 368999999877664434 5599999999999999999999999999999999997 99999 677722
Q ss_pred CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHH---------HHHHHhhccCCCCCCC----CCChhh
Q 025366 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAP----SFDHGV 213 (254)
Q Consensus 147 ~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~l~~~~~~~----~lS~G~ 213 (254)
....+|+ .++|=..+. =|+.||+.. ++ ++.+.+.+ .+++-.+-.+.+..+. .|||||
T Consensus 408 lG~hiGY-LPQdVeLF~---GTIaeNIaR----f~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ 477 (580)
T COG4618 408 LGRHIGY-LPQDVELFD---GTIAENIAR----FG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 (580)
T ss_pred hccccCc-CcccceecC---CcHHHHHHh----cc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence 1234554 555544333 366666643 22 12233333 3444444445555544 799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||+++|||+..+|.+++||||-+.||......+.+.|.
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~ 516 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL 516 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence 999999999999999999999999999998888877664
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=2.1e-23 Score=217.41 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=118.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (254)
.++++|+++.|+...+ ..+|+|+||++++|+.++|+||+|||||||+++|.|++. |++|.... .+...++ +.
T Consensus 614 ~I~~~~vsF~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~---~~~~Iay-v~ 685 (1495)
T PLN03232 614 AISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV---IRGSVAY-VP 685 (1495)
T ss_pred cEEEEeeEEEcCCCCC-CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE---ecCcEEE-Ec
Confidence 5899999999975211 125699999999999999999999999999999999997 88886211 1233454 77
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhhhhHhhhhhh
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDILV 223 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~ia~al 223 (254)
|+...+. -|+.||+.+. . .++.+++.++++..++. .+.. -..||||||||+++|||+
T Consensus 686 Q~p~Lf~---gTIreNI~fg-----~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 686 QVSWIFN---ATVRENILFG-----S--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred Ccccccc---ccHHHHhhcC-----C--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 7765543 4788877543 2 23556666666655542 2222 236999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
..+|+|+||||||++||+...+++.+
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~ 781 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFD 781 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHH
Confidence 99999999999999999998877754
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=1.7e-23 Score=216.50 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=118.5
Q ss_pred ccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCC-----CCCeEEEeeCCCCCCCCc
Q 025366 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLS 165 (254)
Q Consensus 95 lal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~ 165 (254)
.+|+|+|+.+++|++++|+||||||||||||+|+|++. |+ +|+ .++|... +...++ +.+++.++.
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~y-v~Q~d~~~~-- 252 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHVG-- 252 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEE-ecccccCCC--
Confidence 36799999999999999999999999999999999997 77 899 6676432 233454 667655444
Q ss_pred CCChhhcHHHHHHHcCCCC----------C---------ccH---------------HHHHHHHHhhccCC-------CC
Q 025366 166 QLDAMEDPKEAHARRGAPW----------T---------FNP---------------LLLLNCLKNLRNQG-------SV 204 (254)
Q Consensus 166 ~l~~~e~~~~~~~~~g~~~----------~---------~~~---------------~~~~~~l~~l~l~~-------~~ 204 (254)
.+|+.|++.+.....+... . .+. .....+++.+++.. +.
T Consensus 253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~ 332 (1470)
T PLN03140 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE 332 (1470)
T ss_pred cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence 3899999988654432110 0 000 11345777787752 44
Q ss_pred CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+..+||||||||.+|++++.+|+++++||||+|||.....++.+.+.+
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~ 381 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999988753
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=3e-23 Score=216.89 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=119.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ceecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~~~~~~~~~~~~g~~ 154 (254)
..++++|+++.|+.... ..+|+|+||++++|+.++|+||+|||||||+++|.|.+. |++ |++.. ....++
T Consensus 613 ~~I~~~nvsf~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~Iay- 683 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGTVAY- 683 (1622)
T ss_pred CceEEEeeEEEccCCCC-CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCeEEE-
Confidence 35999999999975211 125699999999999999999999999999999999997 898 88321 233454
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhhhhHhhhh
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDI 221 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~ia~ 221 (254)
+.++...+. -|+.+|+.+. . .++.+++.++++..++. .+.. -..||||||||+++||
T Consensus 684 v~Q~p~Lfn---gTIreNI~fg-----~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 684 VPQVSWIFN---ATVRDNILFG-----S--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred EcCccccCC---CCHHHHHhCC-----C--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 777765544 4788877542 2 23556667776665542 2222 3469999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
|+..+|+|+||||||++||+...+++.+
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 9999999999999999999988777643
No 363
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-23 Score=190.54 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=118.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
-.++++||++.|+... . +|+||||++.+|+.++|+||||+||||++|+|..+.. -.+|. .+||+..
T Consensus 536 G~i~fsnvtF~Y~p~k-~--vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~S 609 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGK-P--VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSS 609 (790)
T ss_pred CeEEEEEeEEecCCCC-c--eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHH
Confidence 4699999999998742 3 5699999999999999999999999999999999997 88999 6888543
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhh-------ccC--CCC----CCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-------RNQ--GSV----YAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-------~l~--~~~----~~~~lS~G~ 213 (254)
+..+|. +++|.-.+. -+...|+++ +-+.+.+ +++.+..+.- .+. .+. +--.||||+
T Consensus 610 LRs~IGV-VPQDtvLFN---dTI~yNIry-----ak~~Asn-eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 610 LRSSIGV-VPQDTVLFN---DTILYNIRY-----AKPSASN-EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred HHHhcCc-ccCcceeec---ceeeeheee-----cCCCCCh-HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 344564 677764333 244444433 2233222 2222222211 221 122 223799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||||++||++...|.+++|||.|+.||....+.|...+.
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~ 718 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA 718 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence 999999999999999999999999999999888877664
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=7e-23 Score=213.29 Aligned_cols=136 Identities=11% Similarity=0.159 Sum_probs=103.7
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~ 174 (254)
+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++| ..++ +.++...+. .++.+|+.
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iay-v~Q~~~l~~---~Ti~eNI~ 508 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISF-SPQTSWIMP---GTIKDNII 508 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEE-EeCCCccCC---ccHHHHHH
Confidence 6799999999999999999999999999999999998 99999 5554 2454 666654332 47888876
Q ss_pred HHHHHcCCCCCccHHHHH---------HHHHhhccCC----CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 175 EAHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~---------~~l~~l~l~~----~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
+... ++..... +.++.+..+. ......||||||||+++|||++.+|+++|||||+++||+
T Consensus 509 ~g~~-------~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGLS-------YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hccc-------cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 5321 1111122 2222222222 123568999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 025366 242 GVWKDVSSM 250 (254)
Q Consensus 242 ~~~~~l~~l 250 (254)
...+.+.+.
T Consensus 582 ~~~~~i~~~ 590 (1490)
T TIGR01271 582 VTEKEIFES 590 (1490)
T ss_pred HHHHHHHHH
Confidence 999999874
No 365
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=2.4e-22 Score=184.15 Aligned_cols=164 Identities=18% Similarity=0.127 Sum_probs=122.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceec-CCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~-~~~~~~~~~g~ 153 (254)
-|.+.+.|+++.|.+.. . .+++++|.++.++.++++||||||||||+|+++|.+. |..|.+. ..+..-+ .
T Consensus 387 ~pvi~~~nv~F~y~~~~-~--iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~---~ 457 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-M--IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLP---R 457 (614)
T ss_pred CCeEEEeccccCCCCcc-h--hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccch---h
Confidence 57899999999998743 2 5699999999999999999999999999999999997 8888732 2111111 0
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
+.+.-.....-..+.. ++....+ +.....+.+..++..+++. ...++.+||.|||.||.+|+.++.+|.+|
T Consensus 458 -y~Qh~~e~ldl~~s~l---e~~~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 458 -YNQHLAEQLDLDKSSL---EFMMPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred -hhhhhHhhcCcchhHH---HHHHHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 1111000000001111 2222222 2245567889999999987 45677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||||++||.+....+.+.|.+
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe 554 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINE 554 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhc
Confidence 99999999999999999998875
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.87 E-value=1.2e-21 Score=204.45 Aligned_cols=136 Identities=16% Similarity=0.111 Sum_probs=101.8
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+|+|+||++++|++++|+||||||||||+++|+|+++ |++|++.. ....++ +.++... +. .++.+|+.+
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~----~~~i~y-v~Q~~~l-~~--~Tv~enI~~ 743 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWA----ERSIAY-VPQQAWI-MN--ATVRGNILF 743 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE----CCeEEE-EeCCCcc-CC--CcHHHHHHc
Confidence 5699999999999999999999999999999999997 99998322 123554 6666543 22 577787755
Q ss_pred HHHHcCCCCCccHHHH---------HHHHHhh--ccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366 176 AHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~ 242 (254)
.. + .+.... .+.++.+ ++. .......||||||||+++|||++.+|+++|||||+++||+.
T Consensus 744 ~~-----~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 744 FD-----E--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred CC-----h--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 21 1 111112 2233333 121 23456789999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 025366 243 VWKDVSS 249 (254)
Q Consensus 243 ~~~~l~~ 249 (254)
..+.+.+
T Consensus 817 ~~~~i~~ 823 (1560)
T PTZ00243 817 VGERVVE 823 (1560)
T ss_pred HHHHHHH
Confidence 8877765
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.86 E-value=1.2e-21 Score=163.57 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=91.3
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc---------e-ecCCCCC-----CCCeEEEeeCCCCCC
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA---------S-SFDSQVK-----PPDVATVLPMDGFHL 162 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G---------~-~~~~~~~-----~~~~g~~i~~~~~~~ 162 (254)
+++++++++| +++|+||||||||||+++|+|++. +..| + .+.+... ...++. +.++....
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL-TFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEE-EEEcCCCc
Confidence 6789999999 999999999999999999999985 4433 2 2222211 111222 33322111
Q ss_pred CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCC
Q 025366 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLF 238 (254)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~ 238 (254)
++.. ....+.++++. .-..+..+..||+||+||+++|++++ .+|+++|+|||+++
T Consensus 89 -----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 -----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred -----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 1100 12344555555 22356678899999999999999986 46799999999999
Q ss_pred CCHHHHHHHHHHhhc
Q 025366 239 LDGGVWKDVSSMFDE 253 (254)
Q Consensus 239 lD~~~~~~l~~ll~~ 253 (254)
||+..+..+.+++.+
T Consensus 148 LD~~~~~~l~~~l~~ 162 (197)
T cd03278 148 LDDANVERFARLLKE 162 (197)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998864
No 368
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.85 E-value=8.6e-21 Score=178.47 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=119.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ceecCCCCCCCCe-EE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDV-AT 153 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~~~~~~~~~~~~-g~ 153 (254)
..|.++||+..-++.. + .+++.+|++++|+-+.|.|+||||||||+|.|+|+- |.. |++.- +.+. -.
T Consensus 391 ~~i~~~nl~l~~p~~~--~-ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I~~----P~~~~~l 459 (604)
T COG4178 391 HGITLENLSLRTPDGQ--T-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW----PWGSGRISM----PADSALL 459 (604)
T ss_pred ceeEEeeeeEECCCCC--e-eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCceec----CCCCceE
Confidence 6799999999998843 3 469999999999999999999999999999999986 543 33110 1111 12
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCC---CccHHHHHHHHHhhccC--------CCCCCCCCChhhhhhHhhhhh
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~---~~~~~~~~~~l~~l~l~--------~~~~~~~lS~G~~qrv~ia~a 222 (254)
++++..|... -+.. ...-+|. .+..+.+.++|..++++ .+.+-..||+|||||+++||.
T Consensus 460 flpQ~PY~p~---GtLr-------e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 460 FLPQRPYLPQ---GTLR-------EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred EecCCCCCCC---ccHH-------HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 3444444221 1221 2222332 36678888999998886 345667899999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.++|++++|||-|++||+.....+.+++++
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
No 369
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=3.3e-21 Score=165.50 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=45.8
Q ss_pred CCCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..+..||+||+||+++|++++ .+|+++|+|||+++||+..++.+.+.+.+
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 4677899999999999999996 35899999999999999999999988754
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.2e-20 Score=167.11 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=113.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.+.+.+|++.|+... + .|+++||+++.|+.++++|++|+||||++++|..++. +.+|. .++|+..
T Consensus 262 ~v~F~~V~F~y~~~r-~--iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 262 AVAFINVSFAYDPRR-P--ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eEEEEEEEeeccccc-h--hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence 478899999998742 3 5599999999999999999999999999999999997 88887 5666432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCCCC----CCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYAP----SFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~~----~lS~G~~ 214 (254)
+..+|. +++|--.+. -+...| ..+|-+..- .+......+...+ +.+..+. .+|||+|
T Consensus 336 R~aIg~-VPQDtvLFN---Dti~yn-----i~ygr~~at-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek 405 (497)
T COG5265 336 RRAIGI-VPQDTVLFN---DTIAYN-----IKYGRPDAT-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405 (497)
T ss_pred HHHhCc-Ccccceehh---hhHHHH-----HhccCcccc-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence 122332 455432211 122222 223323222 2333333333322 2233332 6899999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||++||+++.+|+|+++||.|+.||....+++...+++
T Consensus 406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~ 444 (497)
T COG5265 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444 (497)
T ss_pred HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999998887764
No 371
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.5e-20 Score=171.47 Aligned_cols=160 Identities=12% Similarity=-0.003 Sum_probs=105.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
.-|.+.+++..||++. .|.+.++++..|..+||+|+||+|||||||+|+.-.-..+|..-+ -.|..+
T Consensus 79 ~Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE---------~~g~~t 145 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQE---------VRGDDT 145 (582)
T ss_pred cceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhh---------eeccch
Confidence 3477889999999844 569999999999999999999999999999998722100111100 001111
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH-HHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~-~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
...- .... +-.+...+..+...+........+.. +|.-+++. ...+...||||.|.|+++||||..+||||+
T Consensus 146 ~~~~-~~l~---~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL 221 (582)
T KOG0062|consen 146 EALQ-SVLE---SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL 221 (582)
T ss_pred HHHh-hhhh---ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe
Confidence 1000 0000 00111122222211111112333333 77777776 356788999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhh
Q 025366 232 VDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||||+.||..+..-+-+.|.
T Consensus 222 LDEPTNhLDv~av~WLe~yL~ 242 (582)
T KOG0062|consen 222 LDEPTNHLDVVAVAWLENYLQ 242 (582)
T ss_pred ecCCcccchhHHHHHHHHHHh
Confidence 999999999988777766653
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.1e-20 Score=189.01 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=126.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------- 146 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-------- 146 (254)
-.|+++|++.+|...... +|+|+||+|++||.|||+|..|||||||+..|.++.. |.+|+ .+||-.
T Consensus 1137 G~I~f~~~~~RYrp~lp~--VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred CeEEEEEeEEEeCCCCcc--hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHH
Confidence 369999999999875333 5699999999999999999999999999999999997 89999 678732
Q ss_pred CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhh
Q 025366 147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGV 213 (254)
Q Consensus 147 ~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~ 213 (254)
.+...+ +|+||...+.. |+..|+ .-..++.++.+.+++++..+. .+..+ ..||-||
T Consensus 1212 LRsrls-IIPQdPvLFsG---TvR~NL-------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1212 LRSRLS-IIPQDPVLFSG---TVRFNL-------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHhcCe-eeCCCCceecC---cccccc-------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 133344 47888765442 333332 223445667777777776653 22222 3799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||-+++||||+++.+||||||.|+..|+..-..|.+.|.+
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888777754
No 373
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=6.1e-20 Score=163.20 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=114.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
-.-++++|+.+.|.+.. +-+..||++|++||+|.|+|.||||||||+++|.|+.+ |++|+ .++|+.+.++.
T Consensus 320 ~~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~-- 391 (546)
T COG4615 320 WKTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQ-- 391 (546)
T ss_pred ccceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCC--
Confidence 34699999999998742 24689999999999999999999999999999999997 88887 45554332210
Q ss_pred EeeCCCCC-CCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 154 VLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 154 ~i~~~~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
.++|. ++. .+..+.-......|-........+...++.+.+. .+...-.||.|||+|+++..|++.
T Consensus 392 ---ledYR~LfS---avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 392 ---LEDYRKLFS---AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred ---HHHHHHHHH---HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 00000 000 0000111111122222224456667777777664 334455799999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
+.+|+++||.-+-.||..++.+.+.+
T Consensus 466 eR~Ilv~DEWAADQDPaFRR~FY~~l 491 (546)
T COG4615 466 ERDILVLDEWAADQDPAFRREFYQVL 491 (546)
T ss_pred hCCeEEeehhhccCChHHHHHHHHHH
Confidence 99999999999999999988876543
No 374
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=1.7e-20 Score=172.09 Aligned_cols=159 Identities=14% Similarity=0.044 Sum_probs=103.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (254)
..-+.++++++.|.+.. .++|+.|++.+|+.+||+|+|||||||+|++|+|... |. ++....+
T Consensus 73 s~dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~----------p~~~d~y 135 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PI----------PEHIDFY 135 (614)
T ss_pred cccceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CC----------Ccccchh
Confidence 34689999999998743 6699999999999999999999999999999999885 32 1122211
Q ss_pred eeCCCCCCCCcCCCh-----------hhcHHHHHHHcCCC-CCccHHHHHH-------------------HHHhhccC--
Q 025366 155 LPMDGFHLYLSQLDA-----------MEDPKEAHARRGAP-WTFNPLLLLN-------------------CLKNLRNQ-- 201 (254)
Q Consensus 155 i~~~~~~~~~~~l~~-----------~e~~~~~~~~~g~~-~~~~~~~~~~-------------------~l~~l~l~-- 201 (254)
.......+.. .+. ...+++....+... ++.+.+.... ++..+++.
T Consensus 136 -~ls~e~~ps~-~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~ 213 (614)
T KOG0927|consen 136 -LLSREIEPSE-KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE 213 (614)
T ss_pred -hhcccCCCch-HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence 1111000000 000 01111111111110 1111222221 22222222
Q ss_pred -CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 202 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 202 -~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
...++..||||++.|+++|++|..+|++|+|||||++||..+..-+.+.+.
T Consensus 214 m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~ 265 (614)
T KOG0927|consen 214 MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA 265 (614)
T ss_pred HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999998887777664
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=2.8e-21 Score=163.09 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=91.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (254)
-|+++|.. .|++.. +++++++ +++||+||||||||||+++|.-... .+.... . ....+.++
T Consensus 5 ~l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~-~----~~~i~~~~- 65 (212)
T cd03274 5 KLVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM-R----QKKLSDLI- 65 (212)
T ss_pred EEEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh-h----hhhHHHHh-
Confidence 46777876 777643 5588877 8999999999999999999985432 000000 0 00111111
Q ss_pred CCCCCCCCcCCChhhcHHH--------HHHHcCCCCCccHH--HHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 157 MDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPL--LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~--------~~~~~g~~~~~~~~--~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
..+...+ .++..+...+ .....++....... ...++++.+++. .+..+..||+||+||+++|++++
T Consensus 66 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 66 HNSAGHP--NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred cCCCCCC--CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 1110000 0111111100 01112221110000 012222333333 45567899999999999999996
Q ss_pred C----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 L----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
. +|+++|+|||+++||+..+..+.+++.+
T Consensus 144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~ 176 (212)
T cd03274 144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKE 176 (212)
T ss_pred hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 3 5799999999999999999999998864
No 376
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=2.6e-19 Score=155.19 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=56.2
Q ss_pred HHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 189 ~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~---p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
....++++.+++. ....+..||+||+||+++|++|+.+ |+++|+||||++||+..+..+.++|.+
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~ 217 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR 217 (261)
T ss_pred HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 4456677778775 3677889999999999999999886 799999999999999999999998864
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.81 E-value=8.2e-20 Score=157.87 Aligned_cols=144 Identities=9% Similarity=0.055 Sum_probs=92.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-e-ecCCC--------C--CCCCeEEEeeCCCCC-------CCCcCC
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ--------V--KPPDVATVLPMDGFH-------LYLSQL 167 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G-~-~~~~~--------~--~~~~~g~~i~~~~~~-------~~~~~l 167 (254)
..+++|+||||||||||+++|++++. +..| + ...+. . .......++.++... -..+.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 56999999999999999999999985 5533 3 22221 0 011112223333210 011123
Q ss_pred ChhhcHHHHHHHcC-C-CCCccHHHHHHHHHhhccCC----------------------CCCCCCCChhhhhhHhhhhhh
Q 025366 168 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 168 ~~~e~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~l~~----------------------~~~~~~lS~G~~qrv~ia~al 223 (254)
++.+++........ + ........+.+.++.+++.. +.++..||+||+||+++|+++
T Consensus 102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 44433322111111 1 11223466777888877652 256789999999999999999
Q ss_pred c----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 G----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+ .+|+++|+|||+++||+..++.+.+++.+
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~ 215 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKT 215 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 7 57899999999999999999999998864
No 378
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.1e-19 Score=163.31 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=121.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (254)
-|++-+.+|++.|.+. +. .+.+++|-|.--..|+|+||||.||||||++|.|-+. |..|+...++ +-.+|.
T Consensus 584 PPvLGlH~VtFgy~gq-kp--LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh--rL~iG~- 654 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQ-KP--LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH--RLRIGW- 654 (807)
T ss_pred CCeeecccccccCCCC-Cc--hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc--eeeeec-
Confidence 4789999999999663 23 4599999999999999999999999999999999997 9999843322 222332
Q ss_pred eeCCCCCCCCcCCChhhcH-HHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 155 LPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
.+++.. ..++..+.+ ++..+.+.++ .......|..+++.. -+.+..|||||+.||++|-.-+..||||
T Consensus 655 ---FdQh~~-E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl 726 (807)
T KOG0066|consen 655 ---FDQHAN-EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL 726 (807)
T ss_pred ---hhhhhH-HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence 222211 113444433 3333344333 456677888888763 3578899999999999998888999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||||..||..+...+.+.|.+
T Consensus 727 ILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHh
Confidence 99999999999999888887754
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=1.4e-19 Score=163.23 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=107.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
.+++..+++|.|+++. |.=-.=++..||++|++||||-|||||.++|+|.++ |++|+ ..+ .-+
T Consensus 341 ~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~--~~~-------~~v 403 (591)
T COG1245 341 TLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS--EED-------LKV 403 (591)
T ss_pred eeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC--Ccc-------ceE
Confidence 4678889999998753 222334577899999999999999999999999998 99985 110 113
Q ss_pred eCCCCCCCC-cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366 156 PMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (254)
Q Consensus 156 ~~~~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl 232 (254)
++..+++.. .+.++.+.+...... .+.. ..-..++++-|.+. .+..+..||||+.|||+||.+|..++|+.+|
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~-~~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll 479 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRS-AFGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL 479 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhh-hccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence 333333321 113444333221111 0111 11223455555554 5778899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhh
Q 025366 233 DGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 233 DEp~~~lD~~~~~~l~~ll~ 252 (254)
|||.+.||.+.+-.+...|.
T Consensus 480 DEPSA~LDvEqR~~vakvIR 499 (591)
T COG1245 480 DEPSAYLDVEQRIIVAKVIR 499 (591)
T ss_pred cCchhhccHHHHHHHHHHHH
Confidence 99999999998877766654
No 380
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=5.3e-19 Score=178.98 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=121.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
.+.++++|.++..+.. .....|+|+||+|++|+.+||+|+-|||||+|+..|.|.++ ..+|+ .+.|. .++
T Consensus 516 ~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----iaY 586 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VAY 586 (1381)
T ss_pred CceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EEE
Confidence 3468999999998762 23336799999999999999999999999999999999997 78887 44443 333
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCC-------------CCCCCChhhhhhHhhh
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------------YAPSFDHGVGDPVEDD 220 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~-------------~~~~lS~G~~qrv~ia 220 (254)
++|...-.. -|+.||+-| | ..++.++..++++...+..+. +--.||||||||+++|
T Consensus 587 -v~Q~pWI~n---gTvreNILF-----G--~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA 655 (1381)
T KOG0054|consen 587 -VPQQPWIQN---GTVRENILF-----G--SPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA 655 (1381)
T ss_pred -eccccHhhC---CcHHHhhhc-----C--ccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence 555544332 366776643 3 446788888888887765321 2347999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
||+..++||++||-|++.+|...-+++.+
T Consensus 656 RAVY~~adIYLLDDplSAVDahvg~~if~ 684 (1381)
T KOG0054|consen 656 RAVYQDADIYLLDDPLSAVDAHVGKHIFE 684 (1381)
T ss_pred HHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence 99999999999999999999988777665
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.79 E-value=2.6e-19 Score=151.12 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=91.7
Q ss_pred eEEEecceeecccccceeccccceeeeeC-CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC-------CCCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-------SQVK 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~-~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~-------~~~~ 147 (254)
.|+++|+. .|.+. .+++|... +|++++|+||||||||||+++|++.+-. +..+. ... ....
T Consensus 5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence 47888988 65441 45666654 5899999999999999999999965421 22222 110 0000
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH--HHHhhcc--CCCCCCCCCChhhhhhHhhhhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~--~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al 223 (254)
...++. +.++....+ .+... .++ +...+.+ .++...+ ..+..+..||+||+||+++|+++
T Consensus 75 ~~~v~~-~f~~~~~~~----~~~r~-------~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 75 TAEVSF-TFQLGGKKY----RVERS-------RGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred cEEEEE-EEEECCeEE----EEEEe-------cCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 111222 222211110 11110 111 1111111 1111111 13567789999999999999999
Q ss_pred cC----------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~----------~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+. +|+++|+|||+++||+..++.+.+++.+
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~ 178 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 74 5789999999999999999999888753
No 382
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.4e-18 Score=172.96 Aligned_cols=172 Identities=12% Similarity=-0.013 Sum_probs=125.3
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~ 150 (254)
+.-..|+.+.-.....+...|+||+=-+.+|.+.||+|+|||||||||++|+|... ..--+|+ .++|... +..
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCchhhhccc
Confidence 34455555444111122335699999999999999999999999999999999852 1123455 4666432 344
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC---CCCccHHHHHHHHHhhccC--CCCCCCC----CChhhhhhHhhhh
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPS----FDHGVGDPVEDDI 221 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~----lS~G~~qrv~ia~ 221 (254)
.|+ +.+++.+... +|+.|-+.+....+-- +.....+.++++++.|++. .+.-+.. ||.+||+|+.||.
T Consensus 866 ~GY-vqQ~DiH~~~--~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 866 SGY-VEQQDIHSPE--LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred cce-eecccccCcc--cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence 676 7888877754 8999988876654422 2222224567888888887 4444444 9999999999999
Q ss_pred hhcCCC-cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 222 LVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 222 al~~~p-~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.|+.+| .||.|||||+|||..+..-+.++++
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr 974 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLR 974 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence 999999 8999999999999999888888765
No 383
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.77 E-value=9.9e-19 Score=146.72 Aligned_cols=131 Identities=13% Similarity=0.050 Sum_probs=82.1
Q ss_pred eeeeCCCeEEEEECCCCCcHHHHHHHHH----HhhcccCCCCce-e-----cCCCCCCCCeEEEeeCCC--CCCC-CcCC
Q 025366 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKAS-S-----FDSQVKPPDVATVLPMDG--FHLY-LSQL 167 (254)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLlk~L~----Gll~~~~p~~G~-~-----~~~~~~~~~~g~~i~~~~--~~~~-~~~l 167 (254)
++++.+| +++|+||||||||||+++|. |... |+.|. . +.........+. +..+. ..+. ...+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~-~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKL-AFENANGKKYTITRSL 91 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEE-EEEeCCCCEEEEEEEh
Confidence 3456566 99999999999999999996 5553 55553 1 111111122232 22221 1100 0011
Q ss_pred ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhh------HhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr------v~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
++.+++.+ .+ .....+.+ +..+..||+||+|| ++++++++.+|+++|+|||+++||+
T Consensus 92 ~~~~~~~~------~~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~ 154 (204)
T cd03240 92 AILENVIF------CH----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154 (204)
T ss_pred hHhhceee------ec----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence 22222211 01 11122222 55678999999996 6889999999999999999999999
Q ss_pred HHHH-HHHHHhhc
Q 025366 242 GVWK-DVSSMFDE 253 (254)
Q Consensus 242 ~~~~-~l~~ll~~ 253 (254)
..++ .+.+++.+
T Consensus 155 ~~~~~~l~~~l~~ 167 (204)
T cd03240 155 ENIEESLAEIIEE 167 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 9999 89888854
No 384
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.77 E-value=4.1e-18 Score=157.57 Aligned_cols=166 Identities=15% Similarity=0.064 Sum_probs=119.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-e--cCCCCCCCCe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-S--FDSQVKPPDV 151 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~--~~~~~~~~~~ 151 (254)
+++++++|+..-++. ..+ +++++||+|++|+-+.|.||||||||.|+|+|+|+- | .+|+ . .++. + .-
T Consensus 432 n~i~~e~v~l~tPt~-g~~-lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW----p~~~G~l~k~~~~~--~-~~ 502 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTN-GDL-LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW----PSTGGKLTKPTDGG--P-KD 502 (659)
T ss_pred ceEEeeeeeecCCCC-Cce-eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc----ccCCCeEEecccCC--C-Cc
Confidence 689999999998874 233 458999999999999999999999999999999985 6 6776 2 2221 1 11
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC--------C-----CCCCCCCChhhhhhH
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--------G-----SVYAPSFDHGVGDPV 217 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--------~-----~~~~~~lS~G~~qrv 217 (254)
..++++..|.... |..+.+-+..... ......+.+.+...|++++++ . .-+...||+||+||+
T Consensus 503 lfflPQrPYmt~G---TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 503 LFFLPQRPYMTLG---TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred eEEecCCCCcccc---chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 2335555543221 2223222221111 112334567778888888764 1 124568999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++||.+.++|++-||||-|+++|++.-..+.+.+.+
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 999999999999999999999999988888777654
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=8.8e-18 Score=140.35 Aligned_cols=133 Identities=11% Similarity=0.118 Sum_probs=85.7
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-----ce----ecCCCCCCCCeEEEeeCCCCCCCCcCCC
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQLD 168 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-----G~----~~~~~~~~~~~g~~i~~~~~~~~~~~l~ 168 (254)
+++++++.+| +.+|+||||||||||+..|...+. ... |. .+.......... +.++....+
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~--~~~~~~~~~----- 81 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKIT--VTLKNQGLD----- 81 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEE--EEEEcCCcc-----
Confidence 5677777776 889999999999999999986553 221 21 010000011111 111111111
Q ss_pred hhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHH
Q 025366 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVW 244 (254)
Q Consensus 169 ~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~ 244 (254)
++ .........+.++++. .-..+.++..||+||+||+++|+++ +.+|+++|+|||+++||...+
T Consensus 82 --~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 82 --AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred --CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 00 0011112344455554 3335677889999999999999999 589999999999999999999
Q ss_pred HHHHHHhhc
Q 025366 245 KDVSSMFDE 253 (254)
Q Consensus 245 ~~l~~ll~~ 253 (254)
..+.++|.+
T Consensus 150 ~~~~~~l~~ 158 (198)
T cd03276 150 KISTDLLVK 158 (198)
T ss_pred HHHHHHHHH
Confidence 999887754
No 386
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=2.4e-18 Score=141.92 Aligned_cols=172 Identities=16% Similarity=0.267 Sum_probs=120.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce--ecCC-CCC--C-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDS-QVK--P- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~--~~~~-~~~--~- 148 (254)
|+++.++|++..+......+.+++++|+++++|||-||+|.+|||||-.+|.|+|..+.-|--... .|+. +.. .
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 678999999999987777788999999999999999999999999999999999998633332222 1221 000 0
Q ss_pred ----CCeEE---EeeCCCCCCCCcCCChhhcHHHH-HHHc-CCC-C----------CccHHHHHHHHHhhccCC-----C
Q 025366 149 ----PDVAT---VLPMDGFHLYLSQLDAMEDPKEA-HARR-GAP-W----------TFNPLLLLNCLKNLRNQG-----S 203 (254)
Q Consensus 149 ----~~~g~---~i~~~~~~~~~~~l~~~e~~~~~-~~~~-g~~-~----------~~~~~~~~~~l~~l~l~~-----~ 203 (254)
.-+|. +|.++.. +-.+..+.. +..+ .+| + .+...+..+++..+++.. .
T Consensus 81 r~RRk~ig~~isMIFQeP~-------sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQ-------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred HHhhhhhccchhhhhcCch-------hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 01111 2222221 111111111 1111 011 1 123345667788887763 3
Q ss_pred CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 204 ~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
-|+.++--|+.|+|.||.|++.+|++||.||||+.+|+..+.++..++..
T Consensus 154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~ 203 (330)
T COG4170 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR 203 (330)
T ss_pred hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999988753
No 387
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=6.3e-18 Score=138.91 Aligned_cols=170 Identities=15% Similarity=0.041 Sum_probs=119.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CC
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP 149 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~ 149 (254)
-.|+++++.+.|.... + .+-|+|++++.|....|+|.||||||||+|+|+|-.- .-.|. .+.|... ..
T Consensus 12 ~aievsgl~f~y~~~d-P--~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSD-P--IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred ceEEEeccEEecccCC-c--eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcccccccc
Confidence 3699999999998643 3 4489999999999999999999999999999999763 11232 2222110 01
Q ss_pred CeEEEeeCCCCCCC-----CcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc
Q 025366 150 DVATVLPMDGFHLY-----LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 150 ~~g~~i~~~~~~~~-----~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
.+|......+ .+. ..+.+...++......+++.. .+.++-..+++.|.+....+.+..|-|||+||.|+..|+
T Consensus 86 ~Sgdl~YLGg-eW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL 163 (291)
T KOG2355|consen 86 SSGDLSYLGG-EWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL 163 (291)
T ss_pred ccCceeEecc-cccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc
Confidence 1122111111 110 001122222233333455422 234666778888888888888999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..-+||+|||.|.-||..++..+.+++++
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.73 E-value=2.2e-18 Score=138.38 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=102.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCC------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP------ 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~------ 149 (254)
++++++|...- -|-.+|.++..||++-++||||||||||+-.++|++ |.+|+ .++|.....
T Consensus 3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eL 70 (248)
T COG4138 3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATEL 70 (248)
T ss_pred eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHH
Confidence 56677776442 236788999999999999999999999999999999 88887 456543211
Q ss_pred --CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc-
Q 025366 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG- 224 (254)
Q Consensus 150 --~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~- 224 (254)
...+ +.+.....+ .++++.... ...|.......+..+...+.+. ..+.+.+||||+=|||-+|..+.
T Consensus 71 ArhRAY-LsQqq~p~f--~mpV~~YL~-----L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 71 ARHRAY-LSQQQTPPF--AMPVWHYLT-----LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHHHHH-HhhccCCcc--hhhhhhhhh-----hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 1111 222211111 122222211 1113323334456666666665 34567899999999999886542
Q ss_pred ------CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 225 ------LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 225 ------~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
...+++|+|||+++||...+-.+-.++.
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~ 176 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS 176 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHH
Confidence 3347899999999999987776666654
No 389
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.5e-17 Score=152.39 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=120.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCC----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP---- 149 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~---- 149 (254)
.+.+++++++..- .++|+||++++|||+||.|--|||+|-|++.|.|..+ +..|+ .++|+....
T Consensus 261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~ 329 (500)
T COG1129 261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR 329 (500)
T ss_pred CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence 4678888886442 2489999999999999999999999999999999886 78999 677754321
Q ss_pred -----CeEEEeeCCCCCC-CCcCCChhhcHHHH-HHHcC---C-CCCccHHHHHHHHHhhccC---CCCCCCCCChhhhh
Q 025366 150 -----DVATVLPMDGFHL-YLSQLDAMEDPKEA-HARRG---A-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 215 (254)
Q Consensus 150 -----~~g~~i~~~~~~~-~~~~l~~~e~~~~~-~~~~g---~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q 215 (254)
-.++ ++-|-..- -...+++.+|+... ...+. + .............+.|... .+..+..||||.+|
T Consensus 330 ~Ai~~Gi~~-v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 330 DAIKAGIAY-VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHcCCEe-CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 1232 33321110 00124667776554 11111 1 1222223345566666654 45778899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||.+|+.|..+|+||||||||-|.|..++.+|.+++.+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~ 446 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999864
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=8.9e-18 Score=144.88 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCCCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 206 APSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 206 ~~~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..||+||+||+++|++++. +|+++|+|||+++||+..+..+.++|.+
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~ 204 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIRE 204 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 47899999999999999975 4899999999999999999999888764
No 391
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=1.4e-16 Score=158.59 Aligned_cols=64 Identities=13% Similarity=0.013 Sum_probs=56.6
Q ss_pred HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...+.++.++++ ....+..||+||+||+.+|++|+.+| +++|||||+++||+..+..+.++|++
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~ 878 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 446778888886 35678899999999999999999999 99999999999999999999998864
No 392
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.69 E-value=2.5e-16 Score=163.44 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=53.8
Q ss_pred HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhc---CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~---~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++++.+++. .+..+..||+||+||+++|++|+ .+|+++||||||++||+..++.+.++|++
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~ 857 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS 857 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 567777775 35678899999999999999997 69999999999999999999999998864
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=5.7e-16 Score=154.02 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=55.0
Q ss_pred HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcC---CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~---~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...++++.++++ ....+..||+||+||+.+|++|+. +|+++||||||++||+..+..+.++|.+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~ 876 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR 876 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 345677777775 356788999999999999999986 5899999999999999999999998864
No 394
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.64 E-value=2.4e-16 Score=131.36 Aligned_cols=145 Identities=48% Similarity=0.860 Sum_probs=126.6
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (254)
-+.-+.+||+|+.|+||||++..+... ||..-..++.+..+ +..++++|||++++..+..+++++..++++|.+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~~f~~e~i~--iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVNKFAQESIN--IAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhh----cchhhhhhhhhhcc--eeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 445789999999999999999888764 56654444433322 456689999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhhc--cCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhcC
Q 025366 184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254 (254)
Q Consensus 184 ~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~~ 254 (254)
+.++...+.++++.+. -..++++|.|++|.+..+.-...+....+|+|+++.+..||.+.|+.+.+++|+|
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k 262 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDK 262 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhh
Confidence 9999999999999888 5688999999999999999999999999999999999999999999999999875
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=3.7e-16 Score=141.35 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=97.4
Q ss_pred cceeecccccceeccccceee-eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee-CCC
Q 025366 82 CMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP-MDG 159 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl-~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~-~~~ 159 (254)
++..+|+...-++ . .+ ...+|+++||+|+||-||||-+|+|+|.+. |.-|..-+ +|.+-.++. +.|
T Consensus 79 e~vHRYg~NgFkL---~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrG 146 (591)
T COG1245 79 EVVHRYGVNGFKL---Y--RLPTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRG 146 (591)
T ss_pred cceeeccCCceEE---e--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhh
Confidence 4678888743221 1 22 245699999999999999999999999997 87775211 111100000 000
Q ss_pred CCC-------CCcCCChhhcHHH---HHHH-cC----CCCCc-cHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 160 FHL-------YLSQLDAMEDPKE---AHAR-RG----APWTF-NPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 160 ~~~-------~~~~l~~~e~~~~---~~~~-~g----~~~~~-~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
-.+ ...++.+...+++ +.+. .| +.... ..-...++.+.|++. .++.+.+||||+-||++||.
T Consensus 147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 000 0000011000011 0000 00 00000 011345566666665 57889999999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++..++|++++|||++.||...+..+.+++.+
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Ire 258 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHH
Confidence 99999999999999999999888777766643
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.62 E-value=4.2e-16 Score=130.32 Aligned_cols=109 Identities=10% Similarity=0.035 Sum_probs=72.5
Q ss_pred cceeeeeCCC-eEEEEECCCCCcHHHHHHHHH-HhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 98 SALASNVNVK-HIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 98 ~~vsl~i~~G-eivgLiGpNGsGKSTLlk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
.++||++.+| ++++|.||||||||||+|+|+ +.+. + ..|..++.... .
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~-------------~~G~~vp~~~~------------~-- 67 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---A-------------QSGLPIPAAEG------------S-- 67 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---H-------------HcCCCcccccc------------c--
Confidence 6789999999 489999999999999999998 3321 1 11111111100 0
Q ss_pred HHHHcCC-CCCccHHHHHHHHHhhcc--CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 176 AHARRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 176 ~~~~~g~-~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
..++ .+.+. .++. ........||+||+|++.+++++ .+|+++|+|||++++|+..+..+..
T Consensus 68 ---~~~~~~~~~~---------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~ 131 (200)
T cd03280 68 ---SLPVFENIFA---------DIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAI 131 (200)
T ss_pred ---cCcCccEEEE---------ecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHH
Confidence 0111 00000 0000 12344578999999999998775 7999999999999999998887753
No 397
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.61 E-value=9e-16 Score=140.84 Aligned_cols=162 Identities=14% Similarity=0.042 Sum_probs=108.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ceecCCCCCCCCeEEEe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL 155 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~~~~~~~~~~~~g~~i 155 (254)
-|.++|+-..-++ ..+ ++..++|.|++|-.+.|+||||||||.|+|+|.|+- |.. |.+.- .+++.-.+|
T Consensus 481 gI~lenIpvItP~--~~v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW----Pvy~g~L~~---P~~~~mFYI 550 (728)
T KOG0064|consen 481 GIILENIPVITPA--GDV-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW----PVYNGLLSI---PRPNNIFYI 550 (728)
T ss_pred ceEEecCceeccC--cce-eecceeEEecCCceEEEECCCCccHHHHHHHHhccC----cccCCeeec---CCCcceEec
Confidence 3778888888776 334 468999999999999999999999999999999985 653 33211 133334445
Q ss_pred eCCCCCCCCc--CCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-----------CCCCCCCCChhhhhhHhhhhh
Q 025366 156 PMDGFHLYLS--QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 156 ~~~~~~~~~~--~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~lS~G~~qrv~ia~a 222 (254)
++..|.--.. +.-.+.+...-..+.|+. ...+..+++.+.+. -.-+...||||+|||+++||.
T Consensus 551 PQRPYms~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 551 PQRPYMSGGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred cCCCccCcCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 5554422100 000111111122234443 34455555555543 122445799999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+.++|+..+|||-|+....+....+.+..+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 999999999999999988877777776654
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.2e-15 Score=136.91 Aligned_cols=163 Identities=13% Similarity=0.088 Sum_probs=114.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee-cCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~ 153 (254)
-|.+++.+|++.|..... ..+.++++.++.-..++++|+||+||||++|++.+.+. |.+|.. ..+ +...++
T Consensus 360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~~ 431 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIKY 431 (582)
T ss_pred CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceecc
Confidence 368999999999977432 34599999999999999999999999999999999875 777752 111 111222
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC---CCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~---~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
..+. +... +.. +................+.+...+..+++..+ ..+..||||||-||++|.....+|.+|
T Consensus 432 -f~Qh--hvd~--l~~--~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL 504 (582)
T KOG0062|consen 432 -FAQH--HVDF--LDK--NVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL 504 (582)
T ss_pred -hhHh--hhhH--HHH--HhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE
Confidence 1111 1110 111 11111111111112256778888999998743 336789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhh
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||||||+.||.++-..+...|.
T Consensus 505 VLDEPTNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 505 VLDEPTNHLDRDSLGALAKALK 526 (582)
T ss_pred EecCCCccccHHHHHHHHHHHH
Confidence 9999999999998888777664
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.58 E-value=7e-15 Score=131.92 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=97.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE--------eeCCCCCCCCcCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV--------LPMDGFHLYLSQL 167 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~--------i~~~~~~~~~~~l 167 (254)
+++|+||++++|++++|+|+|||||||++++|+|... ..|+ +..+|++|.+ ..+.+.+-+ .+
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~----~~~e----e~y~p~sg~v~vp~nt~~a~iPge~Ep--~f 467 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK----GRGE----EKYRPDSGKVEVPKNTVSALIPGEYEP--EF 467 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh----cccc----cccCCCCCceeccccchhhccCccccc--cc
Confidence 6799999999999999999999999999999999874 1111 1112333321 111121100 01
Q ss_pred ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHH
Q 025366 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (254)
Q Consensus 168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~ 243 (254)
. ........+ ...-|.....+++...++. ......+||-||+.|+.||.+++..|.+++.||-.+.||+.+
T Consensus 468 ~---~~tilehl~--s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T 542 (593)
T COG2401 468 G---EVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT 542 (593)
T ss_pred C---chhHHHHHh--hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH
Confidence 1 011111111 1223456677888888876 245667999999999999999999999999999999999988
Q ss_pred HHHHHHHh
Q 025366 244 WKDVSSMF 251 (254)
Q Consensus 244 ~~~l~~ll 251 (254)
...+..-|
T Consensus 543 A~rVArki 550 (593)
T COG2401 543 AVRVARKI 550 (593)
T ss_pred HHHHHHHH
Confidence 77666544
No 400
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.56 E-value=6.9e-15 Score=124.81 Aligned_cols=129 Identities=25% Similarity=0.366 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (254)
++||+|+||||||||++.|++++. +..+ ... ..++.+|+++..... .+... .....+.|..++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~--------~~~-v~vi~~D~f~~~~~~---~~~~~-~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD--------HPN-VELITTDGFLYPNKE---LIERG-LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC--------CCc-EEEEecCcccCcHHH---HHHhh-hhhcCCCcccCCH
Confidence 589999999999999999999984 1100 122 335889998754311 11111 1124567888888
Q ss_pred HHHHHHHHhhcc-CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH-HHHHHHHHHhhc
Q 025366 189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDE 253 (254)
Q Consensus 189 ~~~~~~l~~l~l-~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~-~~~~~l~~ll~~ 253 (254)
..+.+.++.+.. +..+.+|.||+...++..-....+..++|||+||.++..|+ ..|..+.+++|.
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~ 131 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDF 131 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCe
Confidence 899999999998 46889999999999888765544678899999999999884 456778887765
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=3.1e-14 Score=120.23 Aligned_cols=50 Identities=14% Similarity=-0.054 Sum_probs=43.3
Q ss_pred CCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
...+..||+||+|++.++.++ +.+|+++|+|||+++||+..+..+.+++.
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~ 174 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLV 174 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence 456779999999998876543 57999999999999999999999998874
No 402
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.56 E-value=3.8e-14 Score=129.60 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=122.1
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----C-
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~- 148 (254)
-+++++++|+..-... +.++++|||++.+|||+||+|-.|-|-+.|+.+|+|+.+ +.+|+ .++|... .
T Consensus 255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSP 328 (501)
T ss_pred CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCCH
Confidence 5789999999876542 337799999999999999999999999999999999987 78898 5666432 1
Q ss_pred -----CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHc------CC-CCCccHHHHHHHHHhhccC---CCCCCCCCChh
Q 025366 149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG 212 (254)
Q Consensus 149 -----~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~------g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G 212 (254)
...++ |+-|-. +---.+++..+|........ ++ .+........++++.++.. ...++..||||
T Consensus 329 ~~~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG 407 (501)
T COG3845 329 RERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG 407 (501)
T ss_pred HHHHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence 11222 333221 10112356777765433221 11 1111122335566666553 45567799999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.+||+-+||-|..+|++||+-.||-|||..+.+.+.+.|-
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~ 447 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLL 447 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888887764
No 403
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.55 E-value=1.4e-14 Score=117.16 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=72.5
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~ 177 (254)
...++.+.++.++.|+|||||||||+++.+...+- ...|....+. + + ..+.... .. ...+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~------~--~-~~g~~~~-----~~-~~~~-- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRS------G--V-KAGCIVA-----AV-SAEL-- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccC------c--c-cCCCcce-----ee-EEEE--
Confidence 34445566667999999999999999999887763 2222100000 0 0 0011000 00 0000
Q ss_pred HHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
-.....+|+||+||+.+++++.. +|+++|+|||+.++|+..+..+.+.+.+
T Consensus 72 -------------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 72 -------------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred -------------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00112399999999999999975 7899999999999999999888887643
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.55 E-value=8.9e-15 Score=120.21 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=41.7
Q ss_pred CChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 209 lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+||+||+++|++++ .+|+++|+|||++++|+..+..+.+++.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~ 143 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE 143 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999985 68999999999999999999999888753
No 405
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.52 E-value=1.6e-14 Score=126.95 Aligned_cols=133 Identities=24% Similarity=0.395 Sum_probs=98.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (254)
+...+|||+|+||||||||+++|.+++.+ ||..| ...++.+|+++.... ..+... .....|+|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g-----------~V~vi~~D~f~~~~~---~l~~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHR-----------KVELITTDGFLHPNQ---VLKERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCC-----------ceEEEecccccccHH---HHHHcC-CccccCCCh
Confidence 45689999999999999999999999841 22222 234578999875431 111111 123467788
Q ss_pred CccHHHHHHHHHhhccCCC-CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH------HHHHHHHHHhhc
Q 025366 185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDE 253 (254)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~------~~~~~l~~ll~~ 253 (254)
.++...+.+.+..+.-+.. +.+|.||+....++.-....+.+++|||+||.+...++ ..|..+.+++|.
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~ 199 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDF 199 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCE
Confidence 8999999999999988764 88999999998888755555688999999999888544 357778888875
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.51 E-value=1.9e-14 Score=120.28 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.7
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++++++++. |++++|+||||||||||+|+|+|..
T Consensus 16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 447777665 7999999999999999999999976
No 407
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.8e-14 Score=126.39 Aligned_cols=150 Identities=19% Similarity=0.139 Sum_probs=93.7
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (254)
-|.++|.+.+..+ +. .+.+.|+.|-.|..+||+||||-||||||+.|+..--.. ++.+-.++.
T Consensus 264 DIKiEnF~ISA~G--k~--LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaI-------------PpnIDvLlC 326 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KL--LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAI-------------PPNIDVLLC 326 (807)
T ss_pred cceeeeeeeeccc--ce--eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccC-------------CCCCceEee
Confidence 3778888877765 33 458999999999999999999999999999998754110 222211111
Q ss_pred CCCCCCCC------------------------------cCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC---C
Q 025366 157 MDGFHLYL------------------------------SQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---G 202 (254)
Q Consensus 157 ~~~~~~~~------------------------------~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~---~ 202 (254)
-....... .+.++.+.+..... ...+.......+...+|.-|++. .
T Consensus 327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ 406 (807)
T KOG0066|consen 327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ 406 (807)
T ss_pred eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence 11000000 00111111111000 00011111223344555555554 3
Q ss_pred CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHH
Q 025366 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~ 243 (254)
+++...||||.|.||.+||||..+|.+|.|||||..||-..
T Consensus 407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA 447 (807)
T KOG0066|consen 407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA 447 (807)
T ss_pred cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccce
Confidence 56677999999999999999999999999999999999754
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=2.7e-14 Score=121.30 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=75.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+.+|++++..++++++|.||||+|||||+++++-..- ..+-|.+++. ..
T Consensus 19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~g~~vpa-----~~---- 67 (222)
T cd03285 19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----------------------MAQIGCFVPC-----DS---- 67 (222)
T ss_pred EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----------------------HHHhCCCcCc-----cc----
Confidence 4599999999999999999999999999999885431 1222211110 00
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh--cCCCcEEEEeCC---CCCCCHHHHHH
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKD 246 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al--~~~p~vlIlDEp---~~~lD~~~~~~ 246 (254)
...+ .+.+++..+++... ....+|.|+++++.+++++ +.+|+++|+||| |+++|......
T Consensus 68 --~~~~--------~~~~il~~~~l~d~-~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~ 132 (222)
T cd03285 68 --ADIP--------IVDCILARVGASDS-QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW 132 (222)
T ss_pred --EEEe--------ccceeEeeeccccc-hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence 0000 11222333333322 2578999999999999999 899999999999 88899976644
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.48 E-value=2.1e-14 Score=120.18 Aligned_cols=110 Identities=12% Similarity=0.047 Sum_probs=66.2
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~ 177 (254)
...++++..|++++|+||||||||||+++|++..- .+..| .+++-...
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~--~~~~g-------------~~~~~~~~----------------- 67 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVL--LAQIG-------------CFVPAESA----------------- 67 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHH--HHHcC-------------CCcccccc-----------------
Confidence 34566677899999999999999999999996541 01111 11110000
Q ss_pred HHcCCCCCccHHHHHHHHHhhcc--CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 178 ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
..++... .+..+.. ........|+.+++| +..+.+.+.+|+++|+|||++++|+.....+..
T Consensus 68 -~i~~~dq--------i~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 68 -SIPLVDR--------IFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred -ccCCcCE--------EEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 0010000 0000000 112233556677776 555567778999999999999999987776643
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=5.4e-14 Score=117.98 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=73.0
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+.+|++|+++.|++++|+||||+||||++++|+++.- ....|..+ .... ..++..+
T Consensus 18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~d---- 73 (204)
T cd03282 18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIFN---- 73 (204)
T ss_pred EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccChh----
Confidence 4599999999999999999999999999999998863 22222211 0000 0011111
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHH
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD 246 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~ 246 (254)
.++..++.. .......||.|++|.. .+.+++.+|+++|+|||+.++|+.....
T Consensus 74 -----------------~I~~~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~ 128 (204)
T cd03282 74 -----------------RLLSRLSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFA 128 (204)
T ss_pred -----------------heeEecCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHH
Confidence 112222222 2345568899999764 5566778999999999999999965433
No 411
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=2.6e-13 Score=135.96 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=117.1
Q ss_pred eccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCCeEEEeeCCCCCCCCcCC
Q 025366 94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQL 167 (254)
Q Consensus 94 vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~l 167 (254)
+.+++|++.-+++|+.+.++||.|||||||++.++|-+...--..|+ .++|... +.+.++ +.+.+.+++. +
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY-~~e~DvH~p~--l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAY-NSEQDVHFPE--L 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEe-ccccccccce--e
Confidence 44679999999999999999999999999999999998643333455 5666322 233343 6666665554 8
Q ss_pred ChhhcHHHHHHHcCC---CCC-ccHH----HHHHHHHhhccC-------CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366 168 DAMEDPKEAHARRGA---PWT-FNPL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (254)
Q Consensus 168 ~~~e~~~~~~~~~g~---~~~-~~~~----~~~~~l~~l~l~-------~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl 232 (254)
|+.+-+.+..+-.+. .+. ...+ ....+++.+++. .+..+.-.|||||+||.++-+++.+++++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999988887765443 111 1122 123567777775 3455678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhh
Q 025366 233 DGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 233 DEp~~~lD~~~~~~l~~ll~ 252 (254)
||++.|||....-++.+.+.
T Consensus 285 De~t~GLDSsTal~iik~lr 304 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALR 304 (1391)
T ss_pred ecccccccHHHHHHHHHHHH
Confidence 99999999998888877664
No 412
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=2.7e-13 Score=118.81 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=41.4
Q ss_pred CCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 208 ~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.||+||+||+++|++++. +|+++|+|||+++||+..+..+.++|.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~ 219 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE 219 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 489999999999987543 9999999999999999999999988864
No 413
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.45 E-value=1.1e-13 Score=118.79 Aligned_cols=133 Identities=35% Similarity=0.601 Sum_probs=111.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (254)
+..-||||.|+.|+||||+.+.+.-++++ ||. .+ ...++++|||+.++..+.. .-.+.+.|+|+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~----------~~-~v~lvpmDGFhy~n~~L~~----~glm~rKGfPe 143 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSR-WPE----------SP-KVDLVTMDGFHYPNAVLDE----RGLMARKGFPE 143 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhh-CCC----------CC-ceEEEeccccccCHhHhhh----ccccccCCCCc
Confidence 34679999999999999999999999962 222 22 3567999999988654432 22455789999
Q ss_pred CccHHHHHHHHHhhccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 185 TFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 185 ~~~~~~~~~~l~~l~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|...+.+.+..++-+ .++.+|.||+-....+.-+..+..+|||||+||....+|...|..+.+++|.
T Consensus 144 SyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDf 213 (283)
T COG1072 144 SYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDF 213 (283)
T ss_pred cccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceE
Confidence 99999999999999865 4599999999999999999999999999999999999999988888888774
No 414
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.40 E-value=8.5e-13 Score=109.94 Aligned_cols=111 Identities=26% Similarity=0.410 Sum_probs=75.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (254)
++||+|+||||||||+++|.+++. .... .++..|+++... ...+........++.+..++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~~~-~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NPKV-VIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---------------CCCe-EEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999973 2233 357888876432 222211211223445666677
Q ss_pred HHHHHHHHhhccCCCCCCCCC--ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 189 LLLLNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~l--S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
+.+.+.+..+..+.....+.| +.|++++..+ .+.+++++|+|+++.+.++
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 777788888877755555544 5565554433 4678999999999999986
No 415
>PTZ00301 uridine kinase; Provisional
Probab=99.40 E-value=9.5e-13 Score=110.82 Aligned_cols=126 Identities=23% Similarity=0.344 Sum_probs=92.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCcc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 187 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~ 187 (254)
.+|||.|++|||||||.+.|...+.. .. .+....++.+|+|+.....++..+ ....+++.|++++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~---~~---------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMA---HC---------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHh---hc---------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence 68999999999999999988766520 00 122344588999887654444322 1123567788999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 188 ~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...+.+.+..+.-+..+..|.|++....|..-... +..++|+|+||.++..++ ++.+++|.
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~~-i~p~~ViIvEGi~~l~~~----~l~~l~D~ 129 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVT-MTPKSVLIVEGILLFTNA----ELRNEMDC 129 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCceEE-eCCCcEEEEechhhhCCH----HHHHhCCE
Confidence 99999999999988889999999888777753332 456799999999997776 56666664
No 416
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=1.3e-12 Score=109.33 Aligned_cols=124 Identities=27% Similarity=0.382 Sum_probs=96.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~ 185 (254)
+.-+|||.|+|||||||+++.|.-.++ .. ...++.+|+|+......+..++. ...+..|.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---------------~~-~~~~I~~D~YYk~~~~~~~~~~~---~~n~d~p~A 67 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---------------VE-KVVVISLDDYYKDQSHLPFEERN---KINYDHPEA 67 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---------------cC-cceEeeccccccchhhcCHhhcC---CcCccChhh
Confidence 457999999999999999999999984 23 34468999998765544433222 224556888
Q ss_pred ccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 186 ~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+.+.+.+..|..+..+..|.||+-+..|..-.. -..+.+|+|+||.+...|+ ++++++|.
T Consensus 68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i-~~~p~~VVIvEGi~~l~d~----~lr~~~d~ 130 (218)
T COG0572 68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETI-KVEPNDVVIVEGILLLYDE----RLRDLMDL 130 (218)
T ss_pred hcHHHHHHHHHHHHcCCcccccccchhcccccCCcc-ccCCCcEEEEecccccccH----HHHhhcCE
Confidence 999999999999999999999999998888875222 2457799999999999996 67777664
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.37 E-value=1.5e-12 Score=117.45 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=88.1
Q ss_pred cceeeeeCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCC-cCCChhh
Q 025366 98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAME 171 (254)
Q Consensus 98 ~~vsl~i~~G-----eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~-~~l~~~e 171 (254)
.+..|.|..| +++..+|.||.|||||+++++|.++ |+.|..+ |... |.+..+.+.. ..-++.+
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~------p~ln--VSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEI------PVLN--VSYKPQKISPKREGTVRQ 421 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcc------cccc--eeccccccCccccchHHH
Confidence 4555666554 6899999999999999999999987 7776410 0000 1111111110 0112222
Q ss_pred cHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 172 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
... ...+.. ..+..-..++++-|... .+..+..||||+.||+++|..+-..+++.++|||.+.||.+.+.....
T Consensus 422 ll~--~kIr~a--y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 422 LLH--TKIRDA--YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HHH--HHhHhh--hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 111 111111 11222334555544443 466778999999999999999999999999999999999998776655
Q ss_pred Hh
Q 025366 250 MF 251 (254)
Q Consensus 250 ll 251 (254)
.+
T Consensus 498 vi 499 (592)
T KOG0063|consen 498 VI 499 (592)
T ss_pred HH
Confidence 54
No 418
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.35 E-value=1.8e-12 Score=108.85 Aligned_cols=117 Identities=24% Similarity=0.377 Sum_probs=78.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (254)
++|++++|+|+||||||||++.|+++++ ....+ ++.+|+++.........+ .....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---------------KLEIV-IISQDNYYKDQSHLEMAE---RKKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---------------ccCCe-EecccccccChhhCCHHH---hcCCCCCCcc
Confidence 5799999999999999999999999984 22334 478888754322111111 1111122344
Q ss_pred CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
.++...+.+.++.+..+..+..+.|+.....+..- ...+...+++|+|+.++.+++
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~ 120 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDE 120 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchH
Confidence 55666677888888777778888887765555322 223456799999999887765
No 419
>PRK05439 pantothenate kinase; Provisional
Probab=99.34 E-value=1e-12 Score=116.29 Aligned_cols=132 Identities=28% Similarity=0.383 Sum_probs=98.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~ 185 (254)
..-+|||.|++|||||||++.|..++.+ ..+ ... ..++.+|||+..+..+. + .-....+|.|++
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~---~~~--------~~~-v~vi~~DdFy~~~~~l~--~--~~l~~~kg~Pes 148 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSR---WPE--------HPK-VELVTTDGFLYPNAVLE--E--RGLMKRKGFPES 148 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh---hCC--------CCc-eEEEeccccccCHHHHh--h--hhccccCCCccc
Confidence 3569999999999999999999998741 000 123 34599999987643221 1 112234678999
Q ss_pred ccHHHHHHHHHhhccCCC-CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH--HHHHHHHHhhc
Q 025366 186 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDE 253 (254)
Q Consensus 186 ~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~--~~~~l~~ll~~ 253 (254)
++...+.+.+..+.-+.. +.+|.||+-...++.-....+..++|||+||.+.+.++. .|..+.+++|.
T Consensus 149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~ 219 (311)
T PRK05439 149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDF 219 (311)
T ss_pred ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCE
Confidence 999999999999998875 889999998888875444456789999999999886554 57778888775
No 420
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.32 E-value=3.4e-12 Score=108.89 Aligned_cols=131 Identities=42% Similarity=0.715 Sum_probs=91.0
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE-eeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~-i~~~~~~~~~~~l~~~e~~~~~~~~~g~ 182 (254)
-.+..++||+|+||||||||++.|+++++ ++.|. ..+ +.+|+++..... ..... .....+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~-----------~~v~i~~D~~~~~~~~---~~~~g-~~~~~~~ 91 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGEL-----------PAIQVPMDGFHLDNAV---LDAHG-LRPRKGA 91 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCC-----------ceEEEecccccCCHHH---HHhcc-cccccCC
Confidence 35578999999999999999999999995 33331 123 677877543210 00000 0112345
Q ss_pred CCCccHHHHHHHHHhhccCC-CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+..++...+.+++..+..+. ....+.|+..+.+.+.-...+...++++|+|+.+..++...|..+.+.+|
T Consensus 92 ~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D 162 (229)
T PRK09270 92 PETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFD 162 (229)
T ss_pred CCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCC
Confidence 66777888888888888776 77888898888776654333444678999999999988777777766654
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.30 E-value=1.4e-11 Score=103.45 Aligned_cols=117 Identities=26% Similarity=0.405 Sum_probs=80.0
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~ 184 (254)
.++.+|+|.|+||||||||++.|++.+. ..... ++.+|+++.....++..+ .....++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------DESIA-VIPQDSYYKDQSHLSFEE---RVKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------CCceE-EEeCCccccCcccCCHHH---hcccCccCcc
Confidence 4688999999999999999999999983 23333 478888866543222211 1112334466
Q ss_pred CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
.++...+.+.+..+..+..+..+.|+.....+..-. ......+++|+|++++..++
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~ 120 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE 120 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence 677788888888887777777777765544443311 12456789999999998765
No 422
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.28 E-value=4e-11 Score=125.31 Aligned_cols=66 Identities=11% Similarity=-0.068 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 188 PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 188 ~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~---p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
....++.|+.++++ .....+.|||||.||+.+|..|..+ +.++||||||.||++...+.+.++|++
T Consensus 1676 i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~ 1747 (1809)
T PRK00635 1676 IQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRT 1747 (1809)
T ss_pred HHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 44557778888887 4667889999999999999999754 789999999999999999999998764
No 423
>PLN02796 D-glycerate 3-kinase
Probab=99.27 E-value=6.4e-12 Score=112.22 Aligned_cols=133 Identities=24% Similarity=0.340 Sum_probs=88.4
Q ss_pred cccceeeee---CCCe-----EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCC
Q 025366 96 PTSALASNV---NVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167 (254)
Q Consensus 96 al~~vsl~i---~~Ge-----ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l 167 (254)
+++++++.+ ++|+ ++||+|++|||||||++.|.+++. +. | ...+. +.+|++++...+.
T Consensus 81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g---------~~~g~-IsiDdfYLt~~e~ 146 (347)
T PLN02796 81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G---------RRAAS-LSIDDFYLTAADQ 146 (347)
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C---------CceeE-EEECCcccchhhH
Confidence 457888877 4455 599999999999999999999994 11 1 12454 8899988643211
Q ss_pred Chh--hcH-HHHHHHcCCCCCccHHHHHHHHHhhc----cCCCCCCCCCCh----hhhhhHhh--hhhhcCCCcEEEEeC
Q 025366 168 DAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVED--DILVGLQHKVVIVDG 234 (254)
Q Consensus 168 ~~~--e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~----l~~~~~~~~lS~----G~~qrv~i--a~al~~~p~vlIlDE 234 (254)
... ++. ......+|.+..++.....+.++.+. -+..+.+|.|+. |+.+|..- ...+...++|||+|+
T Consensus 147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG 226 (347)
T PLN02796 147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG 226 (347)
T ss_pred HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence 100 111 11122446677778877888888776 356678888875 44557543 223446779999999
Q ss_pred CCCCCCHH
Q 025366 235 NYLFLDGG 242 (254)
Q Consensus 235 p~~~lD~~ 242 (254)
.+.|.-+.
T Consensus 227 w~vG~~p~ 234 (347)
T PLN02796 227 WMLGFKPL 234 (347)
T ss_pred cccCCCCC
Confidence 99998553
No 424
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=3.7e-11 Score=105.04 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=42.4
Q ss_pred CCCCChhhhhhHhhhhhhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 206 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 206 ~~~lS~G~~qrv~ia~al~---------~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
...+|.||+|++.+|++|+ .+|+++|+|||+++||+..++.+.+.+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~ 236 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIE 236 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhh
Confidence 3457999999999999874 7999999999999999999999999874
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.26 E-value=7.8e-11 Score=113.42 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=51.1
Q ss_pred HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+.++.|..++++ .-.....||||+.||+-+|..|.... .+.||||||+||-..-.++++++|+
T Consensus 801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~ 869 (935)
T COG0178 801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLH 869 (935)
T ss_pred HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 344555556665 34567899999999999999996666 8999999999999988888888775
No 426
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.23 E-value=1.3e-11 Score=121.56 Aligned_cols=114 Identities=10% Similarity=0.054 Sum_probs=72.9
Q ss_pred ceeeeeCCC-eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366 99 ALASNVNVK-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177 (254)
Q Consensus 99 ~vsl~i~~G-eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~ 177 (254)
.+++.+..+ ++++|.||||+|||||+|+|+|..- .+..|..++...... +... .
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---------------~aq~G~~Vpa~~~~~----~~~~------d 367 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---------------MFQSGIPIPANEHSE----IPYF------E 367 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---------------HHHhCCCccCCcccc----ccch------h
Confidence 467888777 8999999999999999999999831 122221122211000 0000 0
Q ss_pred HHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH-HHh
Q 025366 178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMF 251 (254)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~-~ll 251 (254)
..+. ..... .++ ......||+||++++.+..++ .++.++|+|||++|+|+.....+. .++
T Consensus 368 ~i~~---~i~~~--~si--------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiL 428 (771)
T TIGR01069 368 EIFA---DIGDE--QSI--------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISIL 428 (771)
T ss_pred heee---ecChH--hHH--------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 0110 00000 111 123567999999999888766 689999999999999999887773 444
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.20 E-value=5e-12 Score=104.44 Aligned_cols=45 Identities=7% Similarity=-0.141 Sum_probs=33.3
Q ss_pred CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~ 248 (254)
......||+|++|...+.. .+.+|+++|+|||+.++|+.....+.
T Consensus 56 ~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~ 100 (185)
T smart00534 56 AQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIA 100 (185)
T ss_pred hccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHH
Confidence 3445688888887544433 34599999999999999998666653
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=1.5e-10 Score=97.74 Aligned_cols=33 Identities=12% Similarity=-0.118 Sum_probs=28.9
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHH
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 244 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~ 244 (254)
-+-+|++++++++.++.++|+|||+.++|+...
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 556888899999999999999999999998653
No 429
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.17 E-value=3.6e-11 Score=101.76 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.+++++++.+ ++++|+||||+|||||+|.+++..
T Consensus 20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 45999999886 999999999999999999998765
No 430
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.16 E-value=4.2e-12 Score=105.59 Aligned_cols=127 Identities=30% Similarity=0.439 Sum_probs=83.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHH--HHHcCCCCCc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 186 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~--~~~~g~~~~~ 186 (254)
||||.|++|||||||.+.|...+. ..|. ......+ ++.+++++... ...+..... ...+..+..+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~-----~~~~~~~-~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN----KRGI-----PAMEMDI-ILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT----TCTT-----TCCCSEE-EEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----ccCc-----CccceeE-EEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 699999999999999999999994 1110 0001123 36677764221 011110000 0012336678
Q ss_pred cHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+...+.+.+..|.-+.....|.|++....+.. ...+..+++|||+||.++.+|+. +.+++|.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~ 129 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDL 129 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SE
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----eccccee
Confidence 88888999999988888888999988777776 33345688999999999999974 5555553
No 431
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.13 E-value=2.1e-10 Score=94.86 Aligned_cols=120 Identities=24% Similarity=0.325 Sum_probs=82.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (254)
+|+|.|++|||||||++.|+..+. . ..++.+|+++.....+....+ ....++.+..++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~-----------------~-~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP-----------------N-CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-----------------C-CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999872 1 235899999876544332211 1224566788888
Q ss_pred HHHHHHHHhhccCCCCCCCCCChhhhhhHh-------------hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~-------------ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..+.+.+..+.-+.....+.++.+...... -+.......+++|+|+++...|+ .+.+++|.
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~ 133 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDI 133 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCc
Confidence 999999998887765555555554432211 12223567789999999988877 45566654
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.12 E-value=1.5e-10 Score=97.54 Aligned_cols=47 Identities=6% Similarity=-0.077 Sum_probs=40.9
Q ss_pred CCCChh--hhhhHhhhhhhcCCCcEEEEeCCC-----CCCCHHHHHHHHHHhhc
Q 025366 207 PSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 207 ~~lS~G--~~qrv~ia~al~~~p~vlIlDEp~-----~~lD~~~~~~l~~ll~~ 253 (254)
...+++ +++++.+|++++.+|+++++|||+ ++||+..++.+.+++.+
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~ 202 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA 202 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence 334444 888899999999999999999999 99999999999998864
No 433
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.12 E-value=1e-10 Score=110.51 Aligned_cols=115 Identities=25% Similarity=0.401 Sum_probs=81.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~ 186 (254)
--+|||.||||||||||++.|+++++ ..+ +|.+|+|+... . .....+..+..+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp-----------------~vg-vIsmDdy~~~~----~-----~i~~nfD~P~a~ 117 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMP-----------------SIA-VISMDNYNDSS----R-----IIDGNFDDPRLT 117 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCC-----------------CcE-EEEEcceecch----h-----hhCccCCChhhc
Confidence 46999999999999999999999872 234 48899875221 0 001122234445
Q ss_pred cHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+...+.+.++.|.-+..+..|.|++-...|..-....+...+|||+||.++..+ ++.+++|.
T Consensus 118 D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDl 179 (656)
T PLN02318 118 DYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDL 179 (656)
T ss_pred chhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCE
Confidence 556677778888888888999999887777532223356789999999999753 56776664
No 434
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.11 E-value=1.4e-10 Score=97.92 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..+...+..+.+.. ..+||||+..+++|..+ ..+.+++||||+.+.||...+..+.++|.+
T Consensus 121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~ 185 (220)
T PF02463_consen 121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKE 185 (220)
T ss_dssp HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHH
T ss_pred cccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34445555444333 39999999999988554 467899999999999999999999998864
No 435
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.10 E-value=3.3e-10 Score=103.21 Aligned_cols=118 Identities=22% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHH--------H
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------H 177 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~--------~ 177 (254)
+.-+|||+|++|||||||++.|.++++ +. ....+. |.+|++++.. .+..... .
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~----------g~~vgv-ISiDDfYLt~-----eer~kL~~~nP~n~LL 271 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VT----------GRKSAT-LSIDDFYLTA-----EGQAELRERNPGNALL 271 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc---cc----------CCceEE-EEECCccCCh-----HHHHHHHhhCccchhh
Confidence 347999999999999999999999984 11 112454 8999998532 2211111 1
Q ss_pred HHcCCCCCccHHHHHHHHHhh----ccCCCCCCCCCCh----hhhhhHhhh--hhhcCCCcEEEEeCCCCCCCHH
Q 025366 178 ARRGAPWTFNPLLLLNCLKNL----RNQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l----~l~~~~~~~~lS~----G~~qrv~ia--~al~~~p~vlIlDEp~~~lD~~ 242 (254)
..+|.+..++.....+.++.+ ..+..+.+|.|+. |+..|+... ..+...+||||+||.+.|..+.
T Consensus 272 ~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~ 346 (460)
T PLN03046 272 ELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPL 346 (460)
T ss_pred cccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCC
Confidence 123445566666666666655 3456777888875 456676442 3345667999999999887553
No 436
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.06 E-value=6.9e-10 Score=97.15 Aligned_cols=106 Identities=27% Similarity=0.404 Sum_probs=68.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC----CC
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW 184 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~----~~ 184 (254)
++||+|+||||||||++.|++++. +..+.++..|+++.. ...+ +...|+ +.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~----------------~~~~~vi~~Dd~~~~----~~~~-----r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG----------------SDLVTVICLDDYHSL----DRKG-----RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC----------------CCceEEEECcccccC----CHHH-----HHHhhccccccc
Confidence 589999999999999999999984 333545777766432 1111 112222 22
Q ss_pred CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
..+...+.+.++.+.-+.....|.|++-...... ...+...+++|+|+++...++
T Consensus 56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~ 110 (273)
T cd02026 56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE 110 (273)
T ss_pred chhHHHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch
Confidence 3334555667777777777777888765543221 112345799999999987775
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.03 E-value=2.1e-09 Score=91.79 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=66.9
Q ss_pred eCCCeEEEEECCCCCcHHHH-HHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTL-lk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~ 182 (254)
+++|++++|.|+|||||||| ++.+++..+ ....+.++..+. +..+..... ..+|+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---------------~g~~~~yi~~e~--------~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ---------------NGYSVSYVSTQL--------TTTEFIKQM-MSLGY 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh---------------CCCcEEEEeCCC--------CHHHHHHHH-HHhCC
Confidence 68899999999999999999 689998864 222233333221 222222222 23443
Q ss_pred CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCC----CHHHHHHHHHHhh
Q 025366 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFL----DGGVWKDVSSMFD 252 (254)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~l----D~~~~~~l~~ll~ 252 (254)
. ...... ...+.. .+.. +.++++..++..+.+.+ ..+|+++++|||++++ |+..++++.+++.
T Consensus 77 ~----~~~~~~-~~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~ 147 (230)
T PRK08533 77 D----INKKLI-SGKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFK 147 (230)
T ss_pred c----hHHHhh-cCcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHH
Confidence 1 111100 011111 1112 34566554443333332 2369999999999998 7776777777764
No 438
>PLN02348 phosphoribulokinase
Probab=99.02 E-value=5.6e-10 Score=101.22 Aligned_cols=122 Identities=22% Similarity=0.299 Sum_probs=82.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC----CCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS----QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~----~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~ 179 (254)
+..-+|||.|++|||||||++.|...+. ..+. ...+ +....+...++.+|+|+..... .+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg----~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~ 113 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG----GAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKE 113 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh----hccCCCccccccccccccCceEEEEcccccCCChh---------hHhh
Confidence 3457999999999999999999999984 1111 0011 0111234557999999764321 0111
Q ss_pred cC----CCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 180 RG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 180 ~g----~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
.+ .+...+...+.+.++.|..+..+..|.|++-...+.. . ..+..++|||+|+.+...|+
T Consensus 114 ~g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~-~-e~I~p~~VVIVEGlh~L~~e 177 (395)
T PLN02348 114 KGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP-P-ELIEPPKILVIEGLHPMYDE 177 (395)
T ss_pred cCCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC-c-EEcCCCcEEEEechhhccCc
Confidence 11 1455667778888988988888888998876655432 2 23567899999999998886
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.01 E-value=4.7e-10 Score=92.26 Aligned_cols=112 Identities=24% Similarity=0.360 Sum_probs=75.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~ 188 (254)
+++|.|++|||||||++.|...+. ..| .. ..++.+|+|+.+.. . + ......+..+..++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~----~~~---------~~-~~~i~~Ddf~~~~~--~--~--~~~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR----VNG---------IG-PVVISLDDYYVPRK--T--P--RDEDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH----HcC---------CC-EEEEehhhcccCcc--c--c--cccCCCCCCCccccH
Confidence 589999999999999999999883 111 12 33588999876430 0 0 000011222223467
Q ss_pred HHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD 240 (254)
+.+.+.+..+..+.....|.|+.-..++..-....+.+.+|||+|+.++..+
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~ 112 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE 112 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence 7788888888877778888888766666543222456789999999999754
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.98 E-value=3.9e-10 Score=111.47 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=68.8
Q ss_pred eeeeeC-CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHH
Q 025366 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (254)
Q Consensus 100 vsl~i~-~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~ 178 (254)
.++.+. .+.++.|.|||++||||+||.++...- ....|..|+-... ..++..+.+. .
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~---------------maq~G~~vpa~~~----~~i~~~~~i~---~ 376 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL---------------MAKSGLPIPANEP----SEIPVFKEIF---A 376 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH---------------HHHhCCCcccCCC----ccccccceEE---E
Confidence 344444 357899999999999999999976631 1222221222110 0011111100 0
Q ss_pred HcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (254)
Q Consensus 179 ~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~ 248 (254)
..|..+ ........||+||++++.+++++ .+|.++|+|||+.|+|+.....+.
T Consensus 377 ~ig~~~----------------si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 377 DIGDEQ----------------SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred ecCCcc----------------chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence 111000 01235678999999999999888 789999999999999998777664
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.98 E-value=2.2e-09 Score=99.05 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=88.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
+.++.+.+++.|.... .+++. .|.+.+|+.++|+|+||+|||||+++|++..+ ++.+. +
T Consensus 129 ~~~~r~~i~~~l~TGi---raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----------------~~~gv-I 187 (432)
T PRK06793 129 HAFEREEITDVFETGI---KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK----------------ADINV-I 187 (432)
T ss_pred CchheechhhccCCCC---EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC----------------CCeEE-E
Confidence 3566777888886532 25566 59999999999999999999999999999883 44454 4
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc-------CCCc
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHK 228 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~-------~~p~ 228 (254)
...|..- .++.+.........++... + .-....+.|.+++.|++.+.+.+ .++-
T Consensus 188 ~~iGerg----~ev~e~~~~~l~~~gl~~t------------v---vv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~V 248 (432)
T PRK06793 188 SLVGERG----REVKDFIRKELGEEGMRKS------------V---VVVATSDESHLMQLRAAKLATSIAEYFRDQGNNV 248 (432)
T ss_pred EeCCCCc----ccHHHHHHHHhhhccccee------------E---EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 4433311 1222221111111111000 0 01345678899999999877665 7889
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+||+|++|...|+. +++..++.
T Consensus 249 LlilDslTr~a~A~--reisl~~~ 270 (432)
T PRK06793 249 LLMMDSVTRFADAR--RSVDIAVK 270 (432)
T ss_pred EEEecchHHHHHHH--HHHHHHhc
Confidence 99999999999984 66655543
No 442
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.97 E-value=8.8e-10 Score=93.62 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=33.3
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.+++++.+.+|++++|.||||+||||++++|++..
T Consensus 20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~ 55 (222)
T cd03287 20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT 55 (222)
T ss_pred EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999999999999999999943
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.96 E-value=6.5e-10 Score=83.43 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=31.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~ 128 (254)
+|++++|++++|++++|+||||||||||++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 779999999999999999999999999999976
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.95 E-value=5e-10 Score=101.29 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=84.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCC----CCCCeEEEeeCCCCCC--CCcCC---ChhhcHHH
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KPPDVATVLPMDGFHL--YLSQL---DAMEDPKE 175 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~----~~~~~g~~i~~~~~~~--~~~~l---~~~e~~~~ 175 (254)
.+|++.|++|-||-||||-+++++|-++ |..|....+.. .....|. .+.++.. ...++ ...+.+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~pp~w~~il~~frgs--elq~yftk~le~~lk~~~kpQyvd~ 172 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNPPDWQEILTYFRGS--ELQNYFTKILEDNLKAIIKPQYVDQ 172 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCCcchHHHhhhhhhH--HHhhhhhhhccccccCcCChHHHHH
Confidence 4599999999999999999999999997 87776322110 0000010 0000000 00000 00111111
Q ss_pred HH-HHc----CC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHH
Q 025366 176 AH-ARR----GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (254)
Q Consensus 176 ~~-~~~----g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l 247 (254)
.. ... +. ....+.....++.+.+.+. .++.+.++|||+.||.++|.+.+.++|+.++|||-+.||...+...
T Consensus 173 ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLka 252 (592)
T KOG0063|consen 173 IPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKA 252 (592)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhH
Confidence 10 000 00 0111112233444444443 5678889999999999999999999999999999999999887665
Q ss_pred HHHh
Q 025366 248 SSMF 251 (254)
Q Consensus 248 ~~ll 251 (254)
...|
T Consensus 253 A~~I 256 (592)
T KOG0063|consen 253 AITI 256 (592)
T ss_pred HHHH
Confidence 5544
No 445
>PRK07429 phosphoribulokinase; Provisional
Probab=98.93 E-value=4.9e-09 Score=93.92 Aligned_cols=109 Identities=25% Similarity=0.397 Sum_probs=71.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC---
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--- 182 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--- 182 (254)
+.-++||.|+||||||||++.|++++. +..+.++.+|+++.. ... .++..+.
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~----------------~~~~~vi~~Dd~~~~----~~~-----~r~~~g~~~l 61 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLG----------------EELVTVICTDDYHSY----DRK-----QRKELGITAL 61 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhc----------------cCceEEEEecccccC----CHH-----HHHhcCCccc
Confidence 346999999999999999999999984 333445788887422 111 1122332
Q ss_pred -CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 183 -~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
+...+...+.+.++.+..+..+..|.|+........- ..+...+++|+|+++...+.
T Consensus 62 ~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~ 119 (327)
T PRK07429 62 DPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDE 119 (327)
T ss_pred CccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcH
Confidence 3334455666777777777777777776654443221 12345689999999988775
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.93 E-value=5.2e-09 Score=91.35 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
.-++|+||||||||||+++|+|++. |+.|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~ 141 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQ 141 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCce
Confidence 6789999999999999999999995 55543
No 447
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.89 E-value=1.1e-08 Score=88.51 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=81.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH---HHcCC--C
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P 183 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~---~~~g~--~ 183 (254)
++||.|.+||||||+.+.|...+.+ ......++..|+|+.+.. ....+...... .++.. |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~--------------~g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR--------------EGIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--------------cCCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence 5899999999999999999988741 111234588999876432 12111111111 13444 7
Q ss_pred CCccHHHHHHHHHhhccCCCCCCCCCCh------------hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~~~~~~lS~------------G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
++.+.+.+.+.++.++.+.....+.|++ |....- ..+....+|||+||.+.++.-. ..++.+++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~---~~~~~p~dvIivEGLhg~~~~~-~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPW---EDLPEDTDLLFYEGLHGGVVTE-GYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCc---ccccCCCcEEEECCCCcccccc-cHHHHHhC
Confidence 7888899999999999988887787754 322211 1234688999999999665411 12555555
Q ss_pred hc
Q 025366 252 DE 253 (254)
Q Consensus 252 ~~ 253 (254)
|.
T Consensus 142 Dl 143 (277)
T cd02029 142 DL 143 (277)
T ss_pred Ce
Confidence 53
No 448
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.88 E-value=1.3e-09 Score=100.75 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=34.9
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (254)
+|++||+++++|++++|+|||||||||||+ +|+.. |++|
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sG 59 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEG 59 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCC
Confidence 679999999999999999999999999999 66665 6665
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.88 E-value=6.9e-09 Score=96.99 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=77.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
++++.++.+.+|.+++|+||||+||||++..|++.+. ...| ...++ ++..|.+. ..+.+++.+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G--------~~kV~-LI~~Dt~R-----igA~EQLr~ 307 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG--------ASKVA-LLTTDSYR-----IGGHEQLRI 307 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC--------CCeEE-EEeCCccc-----hhHHHHHHH
Confidence 3456677788899999999999999999999999874 2322 12344 46776643 567888888
Q ss_pred HHHHcCCCCC--ccHHHHHHHHHhhccCCCCCCCCCChhhhhh-HhhhhhhcCCC-----cEEEEeCCCCCCCH
Q 025366 176 AHARRGAPWT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP-VEDDILVGLQH-----KVVIVDGNYLFLDG 241 (254)
Q Consensus 176 ~~~~~g~~~~--~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr-v~ia~al~~~p-----~vlIlDEp~~~lD~ 241 (254)
....++++.. .+.......+..+.-...+.+......++.. +....+++.++ .+|+||..+.+.+.
T Consensus 308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l 381 (484)
T PRK06995 308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL 381 (484)
T ss_pred HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH
Confidence 7778776432 2222222333333323334444433222221 12222232222 68999998887554
No 450
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=4.8e-09 Score=88.89 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=33.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+-+|++|.+++|++++|.||||+||||+++.+++..
T Consensus 19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 349999999999999999999999999999999875
No 451
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=1.1e-08 Score=102.49 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=52.6
Q ss_pred HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+..+++. .+..+.+|||||+||+.+|++|+.+| +++||||||++||+...+.+.++|.+
T Consensus 469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~ 534 (924)
T TIGR00630 469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKR 534 (924)
T ss_pred HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 445566665 46788999999999999999998875 89999999999999999999998863
No 452
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.76 E-value=1.1e-08 Score=102.66 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=53.5
Q ss_pred HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.++.++++ .+..+..||+||+||+++|++|..+| +++||||||++||+...+.+.++|.+
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~ 536 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKH 536 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHH
Confidence 456666665 46789999999999999999998886 99999999999999999999998863
No 453
>PRK15453 phosphoribulokinase; Provisional
Probab=98.70 E-value=1.4e-07 Score=82.36 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCC-cCCChhhcHH-HHHHHcCC-
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPK-EAHARRGA- 182 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~-~~l~~~e~~~-~~~~~~g~- 182 (254)
++-+++|.|.+||||||+.+.|...+.. ......++..|+|+.+. ..+....... .....+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf 69 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHF 69 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCC
Confidence 4579999999999999999999987730 11123458888887532 1111110000 00112334
Q ss_pred -CCCccHHHHHHHHHhhccCCCCCCCCCCh--hh---hhhHh-h---hhhhcCCCcEEEEeCCCCCC
Q 025366 183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GV---GDPVE-D---DILVGLQHKVVIVDGNYLFL 239 (254)
Q Consensus 183 -~~~~~~~~~~~~l~~l~l~~~~~~~~lS~--G~---~qrv~-i---a~al~~~p~vlIlDEp~~~l 239 (254)
|++.+.+.+.+.++.++.+.....+.|.+ .+ ..+.. . ...+....+|||+||.+.+.
T Consensus 70 ~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~ 136 (290)
T PRK15453 70 GPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGV 136 (290)
T ss_pred CCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccc
Confidence 67788888889999887765544444432 11 11110 0 11233568999999998874
No 454
>COG4240 Predicted kinase [General function prediction only]
Probab=98.68 E-value=8.1e-08 Score=80.63 Aligned_cols=125 Identities=32% Similarity=0.474 Sum_probs=89.6
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcC-CChhhcHHHHHHHcCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ-LDAMEDPKEAHARRGA 182 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~-l~~~e~~~~~~~~~g~ 182 (254)
-...-|+||.||-||||||+.-.|..++. .+| ....+. .++|++++...+ +...++..-...-+|.
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~----~kg--------~ert~~-lSLDDlYlthadrl~La~q~npllq~RGl 113 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLA----AKG--------LERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL 113 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHH----Hhc--------ccceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence 44567999999999999999999998884 222 123454 789998764321 0011111122345788
Q ss_pred CCCccHHHHHHHHHhhccC-CCCCCCCCCh----hhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 183 PWTFNPLLLLNCLKNLRNQ-GSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~-~~~~~~~lS~----G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
+...|....+++++.+.-+ ..+.+|.|+. |..+|..-...+..+.+++|+|+.+.|..|
T Consensus 114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 8889999899999988765 4568889986 888887666666667999999999988655
No 455
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.67 E-value=1.8e-07 Score=76.47 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=76.3
Q ss_pred ccccee--eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee-cCCCCCCCCeEEEeeCCCCCCCCcCCChhhc
Q 025366 96 PTSALA--SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMED 172 (254)
Q Consensus 96 al~~vs--l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~ 172 (254)
+++++. |+++ .-|+.|+|.||+|||||+..|+-... ..+..|.. +.++ +...+ -...+.
T Consensus 25 a~r~l~~~LeF~-apIT~i~GENGsGKSTLLEaiA~~~~-~n~aGg~~n~~~~---------~~~s~-------s~l~~~ 86 (233)
T COG3910 25 AFRHLEERLEFR-APITFITGENGSGKSTLLEAIAAGMG-FNAAGGGKNFKGE---------LDASH-------SALVDY 86 (233)
T ss_pred HHHhhhhhcccc-CceEEEEcCCCccHHHHHHHHHhhcc-ccccCCCcCcCcc---------ccccc-------chHHHh
Confidence 444443 4444 46999999999999999999987653 11222211 1110 00000 000111
Q ss_pred HHHHHH---HcCC-CCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHH
Q 025366 173 PKEAHA---RRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK 245 (254)
Q Consensus 173 ~~~~~~---~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~ 245 (254)
...... ..|+ ........+...++.+.-.. .......|+|+.----+.+.+ ...-+.|||||-++|.+.-+.
T Consensus 87 ~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQl 165 (233)
T COG3910 87 AKLHKRKKPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQL 165 (233)
T ss_pred HHHhhcCCCCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHH
Confidence 111100 0111 12223333344444443222 233456799998766666666 578899999999999998888
Q ss_pred HHHHHhh
Q 025366 246 DVSSMFD 252 (254)
Q Consensus 246 ~l~~ll~ 252 (254)
++..++.
T Consensus 166 ella~l~ 172 (233)
T COG3910 166 ELLAILR 172 (233)
T ss_pred HHHHHHH
Confidence 8877764
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.65 E-value=1.7e-07 Score=80.95 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.1
Q ss_pred ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|.=+.+.+|+.++|+|++|+|||||++.|++.+.
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3346788999999999999999999999999884
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.63 E-value=2.2e-07 Score=70.94 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=59.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~ 186 (254)
+..+.|.||+|+||||+++.|+..+. ...... +..+...... ... .. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---------------~~~~~~-~~~~~~~~~~--~~~----~~---~~------ 50 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---------------PPGGGV-IYIDGEDILE--EVL----DQ---LL------ 50 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---------------CCCCCE-EEECCEEccc--cCH----HH---HH------
Confidence 67899999999999999999999984 221011 2222211100 000 00 00
Q ss_pred cHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248 (254)
Q Consensus 187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~ 248 (254)
............+.+..+..+..+-...+++|++||+....+........
T Consensus 51 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 51 ------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred ------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 11112223345566667766666666668999999999999987665443
No 458
>PRK13695 putative NTPase; Provisional
Probab=98.59 E-value=2.4e-08 Score=81.47 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCCCChhhhhhHhhhhhhcCCCcEEEEeC--CCCCCCHHHHHHHHHHhh
Q 025366 206 APSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 206 ~~~lS~G~~qrv~ia~al~~~p~vlIlDE--p~~~lD~~~~~~l~~ll~ 252 (254)
...+|++++-+..+.+..+.+|++||+|| |+..+|+...+.+.++++
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~ 124 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD 124 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh
Confidence 34688999999988888888999999999 666777776677666653
No 459
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.58 E-value=5e-07 Score=73.93 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=36.6
Q ss_pred CCCCCCCChhhhh------hHhhhhhhcCCCcEEEEeCCCCCCC---HHHHHHHHHHhh
Q 025366 203 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFD 252 (254)
Q Consensus 203 ~~~~~~lS~G~~q------rv~ia~al~~~p~vlIlDEp~~~lD---~~~~~~l~~ll~ 252 (254)
+..+..+|+|+++ ......+...+|+++|+|||++.+| ...+..+.+++.
T Consensus 66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~ 124 (187)
T cd01124 66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLF 124 (187)
T ss_pred ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHH
Confidence 4555678899887 4444444567999999999999999 666666666553
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.54 E-value=2.1e-07 Score=76.86 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=35.5
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
.-+.+.++.|+.++|+||||||||||++.|+++++ |+.|.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~ 55 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI 55 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence 44567789999999999999999999999999996 77777
No 461
>PRK07667 uridine kinase; Provisional
Probab=98.50 E-value=5.1e-07 Score=75.00 Aligned_cols=107 Identities=16% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC--
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-- 183 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-- 183 (254)
..-+|||.|++||||||+.+.|...++ ..| .. ..++..|+++.... . +...+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~~---------~~-~~~i~~Dd~~~~~~-----~-----~~~~~~~~~ 71 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMK----QEG---------IP-FHIFHIDDYIVERN-----K-----RYHTGFEEW 71 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH----hCC---------Cc-EEEEEcCcccchhh-----h-----HHhcCCCch
Confidence 346999999999999999999999884 111 12 23478888754221 0 0111111
Q ss_pred -----CCccHHHHH-HHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366 184 -----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 184 -----~~~~~~~~~-~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~ 237 (254)
..++...+. .++..+..+.....|.|+.-...+..-... +..++++|+|+|++
T Consensus 72 ~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l 130 (193)
T PRK07667 72 YEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL 130 (193)
T ss_pred hhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence 112333333 455666666667778888766554432111 34569999999994
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.50 E-value=4.1e-07 Score=77.69 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHH-HhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g 181 (254)
-+++|.++.|.|++|+|||||+..++ +... ....+.++..+. +..+.. .....++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------------~g~~~~y~~~e~--------~~~~~~-~~~~~~g 76 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK---------------QGKKVYVITTEN--------TSKSYL-KQMESVK 76 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh---------------CCCEEEEEEcCC--------CHHHHH-HHHHHCC
Confidence 47889999999999999999998874 3332 233344454432 111111 1122334
Q ss_pred CCCCccHHHH--HHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcC--CCcEEEEeCCCCCCCHHHHHHHHH
Q 025366 182 APWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSS 249 (254)
Q Consensus 182 ~~~~~~~~~~--~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~--~p~vlIlDEp~~~lD~~~~~~l~~ 249 (254)
+. .... ...+..+... .......+.++.+.+.....++. +|+++++|||++.+|......+.+
T Consensus 77 ~~----~~~~~~~g~l~i~~~~-~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~ 143 (234)
T PRK06067 77 ID----ISDFFLWGYLRIFPLN-TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILN 143 (234)
T ss_pred CC----hhHHHhCCCceEEecc-ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHH
Confidence 21 1111 0001001110 01122345778888888877765 999999999997655433333333
No 463
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.49 E-value=1.5e-07 Score=79.07 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=38.0
Q ss_pred CCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 206 APSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 206 ~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...+|.|+++.+.++..+...+ .++++|||-++|.|..++.+.++|.+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~ 284 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE 284 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence 3456999999988877774444 89999999999999999999998853
No 464
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.47 E-value=3.3e-07 Score=81.66 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.6
Q ss_pred eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 100 vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++.+..|+.++|+|++|||||||++.|+++++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 567889999999999999999999999999984
No 465
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.46 E-value=6.7e-07 Score=70.75 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.|.|+||+||||+++.+++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 466
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.46 E-value=2.7e-07 Score=62.22 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=28.7
Q ss_pred cceeeeeCC-CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 98 SALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 98 ~~vsl~i~~-GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++..+++.+ |+++.|.|+||||||||+..|.-++
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 445666765 6799999999999999999998877
No 467
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=7e-07 Score=82.40 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=57.7
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (254)
+++|++++|+||||+||||+++.|++... -.. .+..+.++..|.+.+ ...+.........|++
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence 46799999999999999999999998641 000 122344577777643 4556666666777765
Q ss_pred CC--ccHHHHHHHHHhhccCCCCCCCCCChhhhhhH
Q 025366 184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 217 (254)
Q Consensus 184 ~~--~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv 217 (254)
.. .+.......+..+.-...+.+.. .|+.+|.
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd 284 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD 284 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence 32 33334444555444333333333 3666653
No 468
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.45 E-value=2.5e-06 Score=73.91 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=31.3
Q ss_pred cccceeeeeCCCe-EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~Ge-ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++..++..++++. ++.|.||+|+|||||++.+...+.
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 5577777777655 899999999999999999998873
No 469
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.41 E-value=3.4e-07 Score=84.80 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=50.9
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
..+.++.+++++.|... +.+++.++ .+.+|++++|+|+||||||||+++|+++.. |+.|.
T Consensus 136 ~p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gv 195 (450)
T PRK06002 136 APPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVV 195 (450)
T ss_pred CCCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeee
Confidence 34578999999999764 23567775 899999999999999999999999999986 77776
No 470
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=2e-06 Score=78.34 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=48.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
++++.++.+++|.+++|+||||+||||++..|++... ...| ...++ ++..|.+. ....+.+..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G--------~~~V~-lit~D~~R-----~ga~EqL~~ 188 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV---MRFG--------ASKVA-LLTTDSYR-----IGGHEQLRI 188 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC--------CCeEE-EEeccccc-----ccHHHHHHH
Confidence 4567778899999999999999999999999998752 1111 12233 46666653 245566655
Q ss_pred HHHHcCCC
Q 025366 176 AHARRGAP 183 (254)
Q Consensus 176 ~~~~~g~~ 183 (254)
.....+++
T Consensus 189 ~a~~~gv~ 196 (374)
T PRK14722 189 FGKILGVP 196 (374)
T ss_pred HHHHcCCc
Confidence 55556653
No 471
>PRK06696 uridine kinase; Validated
Probab=98.36 E-value=1.7e-06 Score=73.51 Aligned_cols=109 Identities=27% Similarity=0.357 Sum_probs=60.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC----
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g---- 181 (254)
..-+|||.|++|||||||.+.|+..++ ..| .....+.+|+|+.... .+...+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~----------~r~~~~~~~~ 76 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV----------IRYRRGRESA 76 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH----------HHHHcCCCCh
Confidence 456999999999999999999999884 111 1223367898875321 111111
Q ss_pred --C-CCCccHHHHHHHHHh-hccCC--CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCC
Q 025366 182 --A-PWTFNPLLLLNCLKN-LRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238 (254)
Q Consensus 182 --~-~~~~~~~~~~~~l~~-l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~ 238 (254)
+ ...++...+.+.+-. +.-.. ....+.++.-...+..-....+...+++|+|+|+..
T Consensus 77 ~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~ 139 (223)
T PRK06696 77 EGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL 139 (223)
T ss_pred hhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh
Confidence 1 134455555444333 22111 222333444333333212223456789999999864
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.34 E-value=1.8e-06 Score=72.03 Aligned_cols=24 Identities=46% Similarity=0.708 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.|+||+||||||+++.|.+.+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998884
No 473
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=4.1e-06 Score=81.26 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=64.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 185 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~ 185 (254)
....++|.||||+|||||+++|.+... +..|+.+ ..... ++.+++..+.. ...+ .....++....
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~-----~~~~~-fv~i~~~~l~~---d~~~---i~~~llg~~~~ 238 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPF-----AEDAP-FVEVDGTTLRW---DPRE---VTNPLLGSVHD 238 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcc-----cCCCC-eEEEechhccC---CHHH---HhHHhcCCccH
Confidence 356799999999999999999999874 3333200 01112 35555533210 1000 00111221111
Q ss_pred ccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 186 FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 186 ~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.........++..++. ....+..+|+| +|++|| +..||+..+..+.+++++
T Consensus 239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 1111222334444432 22334455665 999999 789999999999999865
No 474
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.29 E-value=1.1e-06 Score=80.22 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=47.3
Q ss_pred ceEEEecceeecccccceecccc-----------ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 76 PVVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~-----------~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+++++|+..|.+. + ++|+ |+.+.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus 129 ~ri~Fe~LTf~YP~e--r-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 129 NRVLFENLTPLYPNE--R-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCeEEEEeeecCCCc--c-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 468999999999863 2 2565 9999999999999999999999999999999874
No 475
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=8e-07 Score=82.24 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=34.9
Q ss_pred ccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 95 lal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 377999 9999999999999999999999999999885
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.23 E-value=9.8e-07 Score=72.34 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 589999999999999999999999984
No 477
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=3.4e-06 Score=82.77 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=57.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
++++.++.+++|++++|+||||+||||++..|++.+. ...| .....++..|.+. ....+.+..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~ 236 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRI 236 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHH
Confidence 4567788888899999999999999999999999873 2222 1122335665542 235566666
Q ss_pred HHHHcCCCC--CccHHHHHHHHHhhc
Q 025366 176 AHARRGAPW--TFNPLLLLNCLKNLR 199 (254)
Q Consensus 176 ~~~~~g~~~--~~~~~~~~~~l~~l~ 199 (254)
.....+++. ..+...+.+.++.+.
T Consensus 237 ~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 237 YGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred HHHhCCCCccccCCHHHHHHHHHHhc
Confidence 666777632 234455566666554
No 478
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.23 E-value=9.6e-07 Score=83.33 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=48.2
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+.++++.|+... +++++++.+..|+.++|+||||+|||||++.|.|+++ |.+|+
T Consensus 187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~ 240 (506)
T PRK09862 187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE 240 (506)
T ss_pred ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence 358888998743 6699999999999999999999999999999999997 88876
No 479
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.22 E-value=1.1e-06 Score=84.16 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=43.8
Q ss_pred CCCCCChhhhhhHhhhhhhc----------CCCcEEEEeCCC-CCCCHHHHHHHHHHhhc
Q 025366 205 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 205 ~~~~lS~G~~qrv~ia~al~----------~~p~vlIlDEp~-~~lD~~~~~~l~~ll~~ 253 (254)
.+..||+||+||+++|++++ .+|+++|+|||| ++||+..+..+.++|.+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS 524 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence 44689999999999999886 589999999998 78999999999998864
No 480
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.21 E-value=1.1e-05 Score=72.13 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|++++|+||||+||||++..|++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5689999999999999999999999984
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.20 E-value=1e-06 Score=72.66 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999874
No 482
>PRK08233 hypothetical protein; Provisional
Probab=98.18 E-value=1.1e-05 Score=65.69 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++.+|+|.|++|||||||++.|+..+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhC
Confidence 35799999999999999999999987
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.18 E-value=2.7e-05 Score=68.04 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=29.9
Q ss_pred ccceeeeeC-------CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 97 TSALASNVN-------VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 97 l~~vsl~i~-------~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++++++.++ +|++++++|+||+||||+++.|++.+.
T Consensus 58 ~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 58 LEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred hcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 466666665 458999999999999999999999873
No 484
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.16 E-value=7.2e-06 Score=70.26 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
|.+..|+||.|+|||||+-.++--+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH
Confidence 6788899999999999998887554
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.15 E-value=2.2e-06 Score=79.30 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=48.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+.++.+.++..|... +.+++++ |.+.+|+.++|+|+||+|||||+++|+++.. ++.|.
T Consensus 128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~v 185 (433)
T PRK07594 128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNV 185 (433)
T ss_pred CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEE
Confidence 457777888888543 2367999 9999999999999999999999999999886 67665
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.13 E-value=1.5e-05 Score=72.17 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=25.7
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..++.++.|.||+||||||+++.|.+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35678999999999999999999999874
No 487
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.13 E-value=2.6e-06 Score=87.44 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=45.9
Q ss_pred CCCCCCCCChhhhhhHhhhhhhcC----------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 202 GSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 202 ~~~~~~~lS~G~~qrv~ia~al~~----------~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
....+..|||||++|+.+|++|+. +|++||+||||++||+.....+.++|+.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~ 1005 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDA 1005 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 456778999999999999999975 7999999999999999999999888853
No 488
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.12 E-value=3.2e-06 Score=75.64 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=41.3
Q ss_pred ceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 83 l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+...|... +.+++++ +.+.+|++++|+|+||+|||||+++|+++.. ++.|.
T Consensus 49 ~~~~l~tG---i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v 99 (326)
T cd01136 49 IDEVLPTG---VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV 99 (326)
T ss_pred ceeEcCCC---cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence 44455442 2266888 9999999999999999999999999999986 66554
No 489
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.12 E-value=2.7e-06 Score=87.27 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCCCCCCCChhhhhhHhhhhhhcC--------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 202 GSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 202 ~~~~~~~lS~G~~qrv~ia~al~~--------~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
....+..|||||+++++++++|+. +|++||+||||.+||+.....++++|.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~ 1001 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALD 1001 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 457788999999999999999975 899999999999999999999988875
No 490
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.10 E-value=3.6e-06 Score=81.01 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=41.8
Q ss_pred CCChhhhhhHhhhhhhcCC----CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 208 SFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 208 ~lS~G~~qrv~ia~al~~~----p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.||+||++|+++|++++.. |++||+|||++++|...+..+.+++.+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~ 489 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQ 489 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999764 699999999999999999999988763
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.10 E-value=2.7e-06 Score=70.96 Aligned_cols=27 Identities=41% Similarity=0.614 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++|++++|+||+|||||||++.|++.+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999987
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.09 E-value=1.6e-05 Score=61.05 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+..+.|.||+|+|||||++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999987
No 493
>PRK10869 recombination and repair protein; Provisional
Probab=98.07 E-value=4.1e-06 Score=80.30 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=42.0
Q ss_pred CCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 208 ~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+||||++|+++|++++. +|+++|+|||++++|......+.+++.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~ 479 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQ 479 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 479999999999999986 5899999999999999999999988864
No 494
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=3.6e-06 Score=78.27 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=37.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+++++ |.+.+|++++|+|+||+|||||+++|+++.. ++.|.
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gv 188 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNV 188 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEE
Confidence 66999 9999999999999999999999999999985 66554
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=98.05 E-value=4.8e-06 Score=77.00 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=34.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 67999 9999999999999999999999999999875
No 496
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.02 E-value=4.5e-06 Score=68.12 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999873
No 497
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.02 E-value=8.5e-06 Score=67.39 Aligned_cols=119 Identities=27% Similarity=0.341 Sum_probs=76.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH--------HHHH
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE--------AHAR 179 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~--------~~~~ 179 (254)
-++++.||-|||||||.-.|---+.+ ...| ...++. +++|+|++. ..+..+. ..+.
T Consensus 32 l~igfSgPQGsGKstl~~ald~~lt~--Ky~~--------E~s~~~-~SvDDFYLT-----he~Q~eL~k~npnN~Llq~ 95 (282)
T KOG2878|consen 32 LVIGFSGPQGSGKSTLVFALDYKLTK--KYIQ--------EYSSAT-ISVDDFYLT-----HEGQAELRKKNPNNALLQY 95 (282)
T ss_pred EEEEecCCCCCCceeehhhhHHHHHH--Hhcc--------ccceEE-EEecceeee-----chhHHHHHhhCCCChhhcc
Confidence 48999999999999998777654420 1111 124455 899998854 3333222 2334
Q ss_pred cCCCCCccHHHHHHHHHhhcc----CCCCCCCCCC----hhhhhhHhhhhhhc-CCCcEEEEeCCCCCCCHH
Q 025366 180 RGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 180 ~g~~~~~~~~~~~~~l~~l~l----~~~~~~~~lS----~G~~qrv~ia~al~-~~p~vlIlDEp~~~lD~~ 242 (254)
+|.+...+...+.++++.+-- +..+.+|.|+ +|...|.--..-.- ..-+++|+++.+.|..|.
T Consensus 96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl 167 (282)
T KOG2878|consen 96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPL 167 (282)
T ss_pred CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEeccccccccc
Confidence 667777787777777775532 2346677665 46667766555442 345899999999987664
No 498
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=5.9e-06 Score=86.65 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=12.4
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 025366 109 IVGLAGPPGAGKSTLAAEV 127 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L 127 (254)
+++|+|||||||||++.+|
T Consensus 30 ~~~I~G~NGaGKTTil~ai 48 (1311)
T TIGR00606 30 LTILVGPNGAGKTTIIECL 48 (1311)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6666666666666666666
No 499
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.01 E-value=8.1e-06 Score=81.99 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.0
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|+++. ..+.++.|.|||.+||||++|.++-..
T Consensus 599 nd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ 631 (854)
T PRK05399 599 NDCDLD-EERRLLLITGPNMAGKSTYMRQVALIV 631 (854)
T ss_pred cceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHH
Confidence 778877 667899999999999999999998764
No 500
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.01 E-value=4.1e-06 Score=68.30 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
|++++|+||||||||||++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999976
Done!