Query 025366
Match_columns 254
No_of_seqs 351 out of 2208
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6.9E-38 2.4E-42 281.6 16.5 174 74-253 21-208 (366)
2 2pcj_A ABC transporter, lipopr 100.0 9E-38 3.1E-42 264.6 14.3 169 75-253 2-185 (224)
3 3rlf_A Maltose/maltodextrin im 100.0 1.4E-37 4.9E-42 281.0 14.3 169 75-253 1-178 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 8.5E-38 2.9E-42 280.7 12.6 166 76-251 3-181 (359)
5 3tif_A Uncharacterized ABC tra 100.0 4E-37 1.4E-41 262.4 15.2 171 77-253 1-190 (235)
6 2olj_A Amino acid ABC transpor 100.0 2.5E-37 8.5E-42 267.7 13.1 169 75-253 22-204 (263)
7 3gfo_A Cobalt import ATP-bindi 100.0 2.7E-37 9.1E-42 269.1 13.1 169 76-253 6-188 (275)
8 1vpl_A ABC transporter, ATP-bi 100.0 3.6E-37 1.2E-41 265.8 13.6 170 74-253 12-191 (256)
9 2it1_A 362AA long hypothetical 100.0 1.3E-36 4.6E-41 273.6 14.8 169 75-253 1-178 (362)
10 1g6h_A High-affinity branched- 100.0 9.1E-37 3.1E-41 263.4 12.0 169 75-253 5-198 (257)
11 1g29_1 MALK, maltose transport 100.0 1.6E-36 5.3E-41 274.4 14.0 169 75-253 1-184 (372)
12 1z47_A CYSA, putative ABC-tran 100.0 2.2E-36 7.4E-41 271.5 14.7 169 75-253 12-190 (355)
13 1b0u_A Histidine permease; ABC 100.0 1.6E-36 5.4E-41 262.6 13.3 168 76-253 5-198 (262)
14 2yyz_A Sugar ABC transporter, 100.0 9E-37 3.1E-41 274.5 12.2 169 75-253 1-178 (359)
15 1sgw_A Putative ABC transporte 100.0 3.4E-36 1.2E-40 253.1 14.4 165 76-253 9-178 (214)
16 4g1u_C Hemin import ATP-bindin 100.0 3.7E-36 1.3E-40 260.8 14.2 167 75-253 9-192 (266)
17 1v43_A Sugar-binding transport 100.0 1.8E-36 6E-41 273.8 12.5 169 75-253 9-186 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 7.6E-36 2.6E-40 255.2 13.7 167 76-253 5-184 (240)
19 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-36 7.8E-41 271.6 10.6 171 75-253 1-185 (353)
20 2ihy_A ABC transporter, ATP-bi 100.0 5.3E-36 1.8E-40 261.5 11.5 170 76-253 20-206 (279)
21 3d31_A Sulfate/molybdate ABC t 100.0 4E-35 1.4E-39 262.9 15.7 163 77-253 1-172 (348)
22 2yz2_A Putative ABC transporte 100.0 2.7E-35 9.3E-40 255.4 13.7 170 77-253 2-183 (266)
23 2nq2_C Hypothetical ABC transp 100.0 2.5E-35 8.6E-40 253.9 13.2 164 76-253 3-173 (253)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 3.2E-35 1.1E-39 252.8 10.7 169 75-253 1-188 (250)
25 2onk_A Molybdate/tungstate ABC 100.0 3E-35 1E-39 251.5 9.4 162 77-253 1-171 (240)
26 2zu0_C Probable ATP-dependent 100.0 2.1E-34 7.2E-39 250.0 13.0 169 75-253 18-209 (267)
27 2pjz_A Hypothetical protein ST 100.0 1.5E-33 5.2E-38 244.0 14.4 164 77-253 1-173 (263)
28 2cbz_A Multidrug resistance-as 100.0 1.2E-33 4.1E-38 241.2 12.2 159 75-251 1-170 (237)
29 2ff7_A Alpha-hemolysin translo 100.0 2.6E-33 9E-38 240.4 14.0 162 77-253 7-190 (247)
30 1mv5_A LMRA, multidrug resista 100.0 2E-33 6.9E-38 240.6 12.6 161 77-253 1-184 (243)
31 2ixe_A Antigen peptide transpo 100.0 5.8E-34 2E-38 247.7 9.2 168 76-253 15-201 (271)
32 2pze_A Cystic fibrosis transme 100.0 2.8E-32 9.7E-37 231.5 16.3 155 76-251 5-173 (229)
33 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-32 7.2E-37 235.0 12.6 158 76-253 3-178 (249)
34 3nh6_A ATP-binding cassette SU 100.0 1.8E-32 6.2E-37 241.7 11.4 162 76-253 52-235 (306)
35 2ghi_A Transport protein; mult 100.0 2.4E-32 8.2E-37 236.1 11.7 163 76-253 16-200 (260)
36 3gd7_A Fusion complex of cysti 100.0 2.8E-32 9.6E-37 247.7 11.7 161 76-253 18-200 (390)
37 2bbs_A Cystic fibrosis transme 100.0 6E-30 2.1E-34 224.2 13.1 150 76-251 39-202 (290)
38 3b5x_A Lipid A export ATP-bind 100.0 9.4E-30 3.2E-34 242.6 14.1 164 76-253 340-525 (582)
39 3b60_A Lipid A export ATP-bind 100.0 1.7E-29 5.7E-34 240.9 15.4 164 76-253 340-525 (582)
40 2yl4_A ATP-binding cassette SU 100.0 2.3E-29 7.9E-34 240.5 14.9 165 78-253 342-528 (595)
41 4a82_A Cystic fibrosis transme 100.0 1.9E-29 6.6E-34 240.3 11.5 162 76-252 338-521 (578)
42 3qf4_A ABC transporter, ATP-bi 100.0 3.3E-29 1.1E-33 239.0 11.3 163 76-253 340-524 (587)
43 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-28 5.2E-33 231.9 14.3 161 75-253 267-430 (538)
44 3qf4_B Uncharacterized ABC tra 100.0 2.5E-29 8.5E-34 240.4 8.8 161 77-253 354-536 (598)
45 3bk7_A ABC transporter ATP-bin 100.0 3.1E-28 1.1E-32 232.6 16.1 158 76-253 356-516 (607)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 4.1E-28 1.4E-32 229.1 14.9 159 76-253 286-446 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 5.8E-28 2E-32 230.8 11.9 161 76-253 82-273 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 1.9E-27 6.4E-32 224.6 11.9 159 78-253 21-203 (538)
49 4f4c_A Multidrug resistance pr 99.9 3.3E-27 1.1E-31 242.6 12.4 164 77-253 1076-1262(1321)
50 3j16_B RLI1P; ribosome recycli 99.9 3E-26 1E-30 218.7 15.3 156 81-253 350-512 (608)
51 3g5u_A MCG1178, multidrug resi 99.9 3.1E-26 1.1E-30 234.9 15.4 165 76-253 1029-1216(1284)
52 3g5u_A MCG1178, multidrug resi 99.9 2.3E-26 7.9E-31 235.8 13.3 162 77-252 387-570 (1284)
53 2iw3_A Elongation factor 3A; a 99.9 3.4E-26 1.2E-30 226.6 12.4 170 75-253 669-946 (986)
54 2iw3_A Elongation factor 3A; a 99.9 1.2E-25 3.9E-30 222.9 14.1 156 77-253 435-593 (986)
55 3j16_B RLI1P; ribosome recycli 99.9 3.7E-26 1.3E-30 218.1 10.1 163 82-253 82-266 (608)
56 4f4c_A Multidrug resistance pr 99.9 8.5E-26 2.9E-30 232.2 12.8 162 77-252 415-598 (1321)
57 3ozx_A RNAse L inhibitor; ATP 99.9 1.4E-24 4.9E-29 204.8 13.1 156 81-253 3-183 (538)
58 3ux8_A Excinuclease ABC, A sub 99.9 8.9E-25 3E-29 211.4 11.3 154 96-253 33-249 (670)
59 3aez_A Pantothenate kinase; tr 99.9 1.1E-25 3.7E-30 199.2 -2.0 142 77-240 43-208 (312)
60 3ux8_A Excinuclease ABC, A sub 99.9 2E-22 6.8E-27 195.0 12.8 64 190-253 522-591 (670)
61 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.5E-25 8.5E-30 206.2 -14.2 159 75-253 116-286 (460)
62 3b85_A Phosphate starvation-in 99.8 4.6E-23 1.6E-27 172.3 -0.0 127 85-253 8-145 (208)
63 2vf7_A UVRA2, excinuclease ABC 99.8 4.3E-21 1.5E-25 188.3 11.5 65 189-253 708-778 (842)
64 4gp7_A Metallophosphoesterase; 99.8 6.7E-22 2.3E-26 160.0 3.4 46 207-252 82-143 (171)
65 1tq4_A IIGP1, interferon-induc 99.8 6.6E-23 2.3E-27 187.3 -5.8 140 96-252 38-210 (413)
66 2r6f_A Excinuclease ABC subuni 99.8 6.7E-20 2.3E-24 180.8 13.9 64 190-253 824-893 (972)
67 2ygr_A Uvrabc system protein A 99.8 1.3E-19 4.6E-24 179.2 16.0 63 191-253 843-911 (993)
68 3pih_A Uvrabc system protein A 99.8 1.6E-19 5.5E-24 178.5 16.2 66 188-253 782-853 (916)
69 4aby_A DNA repair protein RECN 99.8 4.4E-20 1.5E-24 168.4 8.5 45 209-253 296-342 (415)
70 2jeo_A Uridine-cytidine kinase 99.8 4E-20 1.4E-24 157.6 7.2 133 96-242 14-149 (245)
71 2v9p_A Replication protein E1; 99.8 2.5E-21 8.5E-26 170.3 -6.7 131 77-248 101-233 (305)
72 1ye8_A Protein THEP1, hypothet 99.8 1E-20 3.4E-25 154.4 -4.1 51 203-253 71-128 (178)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.4E-17 4.6E-22 150.2 12.2 50 204-253 275-330 (365)
74 1e69_A Chromosome segregation 99.7 2.1E-17 7.1E-22 146.4 10.0 50 204-253 215-268 (322)
75 3sop_A Neuronal-specific septi 99.7 4.6E-18 1.6E-22 147.3 2.1 128 109-250 4-137 (270)
76 1z6g_A Guanylate kinase; struc 99.7 5.1E-19 1.7E-23 148.5 -4.9 141 96-251 12-170 (218)
77 3asz_A Uridine kinase; cytidin 99.7 2.5E-18 8.7E-23 142.6 -1.6 129 104-252 3-144 (211)
78 3b9q_A Chloroplast SRP recepto 99.7 9.3E-18 3.2E-22 147.6 1.5 129 98-244 91-238 (302)
79 1pui_A ENGB, probable GTP-bind 99.6 4E-17 1.4E-21 134.6 3.0 170 76-252 2-194 (210)
80 1odf_A YGR205W, hypothetical 3 99.6 6.6E-17 2.2E-21 141.4 4.5 125 104-242 28-168 (290)
81 2og2_A Putative signal recogni 99.6 5.2E-17 1.8E-21 145.8 1.6 130 98-245 148-296 (359)
82 2pt7_A CAG-ALFA; ATPase, prote 99.6 3E-16 1E-20 139.6 5.8 92 96-237 160-251 (330)
83 1sq5_A Pantothenate kinase; P- 99.6 1.9E-17 6.4E-22 145.9 -2.2 142 77-240 37-198 (308)
84 2obl_A ESCN; ATPase, hydrolase 99.6 2.2E-16 7.7E-21 141.3 2.1 144 75-253 43-206 (347)
85 2o8b_B DNA mismatch repair pro 99.6 3.7E-16 1.3E-20 156.7 3.2 132 76-251 749-894 (1022)
86 3tqc_A Pantothenate kinase; bi 99.6 2.1E-17 7.1E-22 146.3 -5.3 139 83-241 66-211 (321)
87 2dpy_A FLII, flagellum-specifi 99.6 4.1E-17 1.4E-21 150.3 -4.3 147 76-253 130-293 (438)
88 1cr0_A DNA primase/helicase; R 99.6 4E-15 1.4E-19 129.7 8.2 37 96-132 24-60 (296)
89 3thx_B DNA mismatch repair pro 99.6 1.8E-16 6.1E-21 157.1 -0.9 116 96-251 662-778 (918)
90 1tf7_A KAIC; homohexamer, hexa 99.6 1.1E-15 3.9E-20 143.7 4.3 137 77-252 257-401 (525)
91 3qkt_A DNA double-strand break 99.5 2.8E-14 9.7E-19 127.1 12.2 50 204-253 244-299 (339)
92 2qnr_A Septin-2, protein NEDD5 99.5 1.9E-16 6.6E-21 139.1 -2.1 142 81-248 2-150 (301)
93 3c8u_A Fructokinase; YP_612366 99.5 7.2E-16 2.5E-20 128.0 -0.4 124 104-251 19-148 (208)
94 2o5v_A DNA replication and rep 99.5 1E-14 3.6E-19 130.9 6.4 49 205-253 261-319 (359)
95 1ewq_A DNA mismatch repair pro 99.5 1.8E-14 6E-19 140.7 8.5 112 96-252 568-685 (765)
96 3thx_A DNA mismatch repair pro 99.5 2.6E-14 8.8E-19 142.0 9.4 110 96-247 651-762 (934)
97 2eyu_A Twitching motility prot 99.5 1.2E-14 4.1E-19 125.2 5.7 113 77-250 5-119 (261)
98 2qag_C Septin-7; cell cycle, c 99.5 1.1E-14 3.8E-19 133.2 5.7 143 75-246 9-160 (418)
99 2i3b_A HCR-ntpase, human cance 99.5 8.5E-17 2.9E-21 132.3 -7.9 47 207-253 82-134 (189)
100 1znw_A Guanylate kinase, GMP k 99.5 2.1E-17 7.2E-22 137.2 -12.5 35 96-132 11-45 (207)
101 2ehv_A Hypothetical protein PH 99.5 2E-15 6.8E-20 127.5 -1.4 50 75-131 4-56 (251)
102 1tf7_A KAIC; homohexamer, hexa 99.4 1.9E-15 6.5E-20 142.2 -4.1 144 76-253 11-170 (525)
103 1nlf_A Regulatory protein REPA 99.4 3.6E-13 1.2E-17 116.5 10.5 130 103-251 26-163 (279)
104 3szr_A Interferon-induced GTP- 99.4 5.1E-16 1.7E-20 148.5 -8.3 143 77-253 10-179 (608)
105 1htw_A HI0065; nucleotide-bind 99.4 1.5E-14 5E-19 115.5 1.0 60 78-145 8-68 (158)
106 4a74_A DNA repair and recombin 99.4 2E-13 6.7E-18 113.8 6.5 113 103-242 21-141 (231)
107 2ga8_A Hypothetical 39.9 kDa p 99.4 1.7E-14 5.7E-19 128.8 -0.2 157 96-252 11-285 (359)
108 2w0m_A SSO2452; RECA, SSPF, un 99.4 6E-14 2.1E-18 116.8 2.1 133 96-252 11-151 (235)
109 1wb9_A DNA mismatch repair pro 99.4 1.5E-13 5.1E-18 134.8 2.8 111 96-247 597-707 (800)
110 3jvv_A Twitching mobility prot 99.3 1.5E-12 5.2E-17 116.7 8.2 37 96-132 105-148 (356)
111 2qm8_A GTPase/ATPase; G protei 99.3 1.2E-14 4.2E-19 129.6 -6.0 60 74-140 26-85 (337)
112 1pzn_A RAD51, DNA repair and r 99.3 8.6E-13 3E-17 118.1 5.6 121 96-242 119-247 (349)
113 1rj9_A FTSY, signal recognitio 99.3 4.7E-13 1.6E-17 117.6 3.5 32 106-140 101-132 (304)
114 1p9r_A General secretion pathw 99.3 7.3E-14 2.5E-18 127.8 -2.6 142 77-232 143-315 (418)
115 2bbw_A Adenylate kinase 4, AK4 99.3 1.9E-14 6.5E-19 122.3 -7.4 133 106-252 26-194 (246)
116 1lw7_A Transcriptional regulat 99.3 7.4E-13 2.5E-17 119.0 2.0 133 97-251 158-311 (365)
117 2cvh_A DNA repair and recombin 99.2 3.4E-11 1.2E-15 99.5 9.4 110 96-242 8-121 (220)
118 2f1r_A Molybdopterin-guanine d 99.2 7.7E-13 2.6E-17 106.9 -1.1 105 108-229 3-124 (171)
119 3ec2_A DNA replication protein 99.2 2.2E-11 7.4E-16 98.2 7.4 32 101-132 32-63 (180)
120 2qag_B Septin-6, protein NEDD5 99.2 1.5E-12 5.1E-17 119.0 -0.1 158 76-252 15-202 (427)
121 1zp6_A Hypothetical protein AT 99.2 4.6E-12 1.6E-16 102.8 2.0 130 103-252 5-145 (191)
122 1ls1_A Signal recognition part 99.2 2.4E-11 8.1E-16 106.3 6.3 130 78-252 77-207 (295)
123 2gza_A Type IV secretion syste 99.2 1.6E-11 5.6E-16 110.2 5.1 59 79-140 137-205 (361)
124 1f2t_B RAD50 ABC-ATPase; DNA d 99.2 1.5E-11 5.3E-16 96.9 4.3 51 203-253 52-108 (148)
125 3euj_A Chromosome partition pr 99.1 4.1E-11 1.4E-15 111.2 6.7 46 96-145 19-65 (483)
126 2ewv_A Twitching motility prot 99.1 5.6E-11 1.9E-15 107.1 7.2 34 97-132 128-161 (372)
127 1s96_A Guanylate kinase, GMP k 99.1 5.3E-11 1.8E-15 99.7 6.0 31 102-132 11-41 (219)
128 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.7E-15 92.0 6.7 27 106-132 35-61 (149)
129 1vma_A Cell division protein F 99.1 1.5E-10 5.1E-15 101.7 6.5 99 99-237 96-197 (306)
130 2rcn_A Probable GTPase ENGC; Y 99.1 1.6E-11 5.4E-16 110.0 0.0 112 97-224 206-329 (358)
131 1udx_A The GTP-binding protein 99.1 6.9E-13 2.4E-17 121.2 -9.2 126 98-244 148-284 (416)
132 3e70_C DPA, signal recognition 99.0 5.8E-12 2E-16 111.8 -3.6 116 103-237 125-254 (328)
133 1in4_A RUVB, holliday junction 99.0 4.3E-12 1.5E-16 112.7 -4.5 52 76-131 17-75 (334)
134 2yhs_A FTSY, cell division pro 99.0 1.4E-10 4.7E-15 107.6 3.6 40 98-140 284-323 (503)
135 2x8a_A Nuclear valosin-contain 99.0 3E-11 1E-15 104.5 -2.0 133 96-251 35-190 (274)
136 1n0w_A DNA repair protein RAD5 99.0 3.1E-09 1.1E-13 88.9 10.5 111 103-242 20-135 (243)
137 3kta_B Chromosome segregation 99.0 6.1E-10 2.1E-14 89.9 5.5 51 203-253 59-113 (173)
138 2yv5_A YJEQ protein; hydrolase 99.0 2.8E-10 9.6E-15 99.7 3.7 115 102-221 160-300 (302)
139 2r6f_A Excinuclease ABC subuni 98.9 9.5E-10 3.2E-14 108.9 7.2 97 155-253 439-551 (972)
140 3nwj_A ATSK2; P loop, shikimat 98.9 1.2E-10 4E-15 99.6 0.6 53 76-132 16-73 (250)
141 3lnc_A Guanylate kinase, GMP k 98.9 3.3E-10 1.1E-14 95.0 3.0 35 97-131 17-52 (231)
142 3pih_A Uvrabc system protein A 98.9 1.1E-09 3.8E-14 108.6 6.8 63 191-253 444-511 (916)
143 3tr0_A Guanylate kinase, GMP k 98.8 1.5E-09 5E-14 88.7 4.1 31 101-131 1-31 (205)
144 3k1j_A LON protease, ATP-depen 98.8 2.5E-09 8.7E-14 102.0 5.5 158 80-253 37-227 (604)
145 2px0_A Flagellar biosynthesis 98.8 6.8E-09 2.3E-13 90.7 6.8 28 105-132 103-130 (296)
146 1sxj_E Activator 1 40 kDa subu 98.8 1.1E-08 3.8E-13 90.5 8.0 30 223-253 131-160 (354)
147 2ygr_A Uvrabc system protein A 98.8 6.9E-09 2.4E-13 103.1 7.1 60 193-252 503-567 (993)
148 2vf7_A UVRA2, excinuclease ABC 98.8 7.9E-09 2.7E-13 101.7 7.0 60 193-252 361-425 (842)
149 3lda_A DNA repair protein RAD5 98.7 1.3E-08 4.5E-13 92.5 7.5 111 103-242 174-289 (400)
150 4ad8_A DNA repair protein RECN 98.7 1E-08 3.5E-13 96.1 4.9 49 205-253 393-444 (517)
151 1qhl_A Protein (cell division 98.7 9.3E-10 3.2E-14 92.6 -2.1 53 77-144 9-62 (227)
152 3kta_A Chromosome segregation 98.7 3.1E-08 1.1E-12 79.4 6.3 39 98-140 18-56 (182)
153 3uie_A Adenylyl-sulfate kinase 98.7 8.2E-09 2.8E-13 84.5 2.9 47 81-131 3-49 (200)
154 2qt1_A Nicotinamide riboside k 98.6 4.2E-08 1.4E-12 80.5 6.2 32 100-131 14-45 (207)
155 1oix_A RAS-related protein RAB 98.6 2.3E-08 7.8E-13 81.1 4.4 38 214-253 151-188 (191)
156 1rz3_A Hypothetical protein rb 98.6 1E-08 3.5E-13 84.1 2.1 30 103-132 18-47 (201)
157 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 2.3E-09 7.8E-14 97.1 -2.1 28 103-130 16-43 (392)
158 2oap_1 GSPE-2, type II secreti 98.6 7.5E-09 2.6E-13 96.9 0.8 46 96-144 249-295 (511)
159 3vaa_A Shikimate kinase, SK; s 98.6 2.8E-08 9.7E-13 81.2 4.0 37 96-132 14-50 (199)
160 2j41_A Guanylate kinase; GMP, 98.6 3.1E-08 1.1E-12 80.8 4.0 31 102-132 1-31 (207)
161 1lvg_A Guanylate kinase, GMP k 98.6 2.3E-08 7.9E-13 82.0 3.2 27 105-131 2-28 (198)
162 3a00_A Guanylate kinase, GMP k 98.5 2.9E-08 9.8E-13 80.4 3.1 26 107-132 1-26 (186)
163 1w1w_A Structural maintenance 98.5 1E-07 3.4E-12 87.2 4.9 46 208-253 333-382 (430)
164 2f9l_A RAB11B, member RAS onco 98.5 9.1E-08 3.1E-12 77.7 4.1 35 216-252 129-163 (199)
165 1u0l_A Probable GTPase ENGC; p 98.5 3.9E-08 1.4E-12 85.9 1.8 38 102-142 164-202 (301)
166 3auy_A DNA double-strand break 98.4 1.3E-07 4.3E-12 85.0 5.0 48 206-253 278-332 (371)
167 1kgd_A CASK, peripheral plasma 98.4 1.1E-07 3.8E-12 76.5 3.9 26 106-131 4-29 (180)
168 4eun_A Thermoresistant glucoki 98.4 1.3E-07 4.6E-12 77.2 4.0 30 102-131 24-53 (200)
169 2r6a_A DNAB helicase, replicat 98.4 8E-07 2.7E-11 81.9 8.9 124 96-240 192-327 (454)
170 2dr3_A UPF0273 protein PH0284; 98.4 9.4E-07 3.2E-11 73.7 8.5 36 96-131 11-48 (247)
171 1ixz_A ATP-dependent metallopr 98.4 3.7E-08 1.3E-12 83.4 -0.2 48 78-131 26-73 (254)
172 2ce7_A Cell division protein F 98.4 4.4E-07 1.5E-11 84.2 7.0 35 96-132 40-74 (476)
173 1iy2_A ATP-dependent metallopr 98.4 4.5E-08 1.5E-12 84.2 -0.1 48 78-131 50-97 (278)
174 1svm_A Large T antigen; AAA+ f 98.4 1.4E-07 4.6E-12 85.1 2.8 36 96-131 158-193 (377)
175 2bdt_A BH3686; alpha-beta prot 98.3 2.9E-07 1E-11 74.2 3.4 25 107-131 2-26 (189)
176 1t9h_A YLOQ, probable GTPase E 98.3 6.1E-08 2.1E-12 85.0 -0.7 36 102-140 168-203 (307)
177 3tau_A Guanylate kinase, GMP k 98.3 3.7E-07 1.3E-11 75.1 4.0 28 105-132 6-33 (208)
178 1w1w_A Structural maintenance 98.3 7.3E-07 2.5E-11 81.5 5.5 46 77-132 6-51 (430)
179 1knq_A Gluconate kinase; ALFA/ 98.2 6.3E-07 2.2E-11 71.2 4.1 27 105-131 6-32 (175)
180 2p67_A LAO/AO transport system 98.2 7.5E-08 2.6E-12 85.6 -1.6 55 74-132 27-81 (341)
181 4e22_A Cytidylate kinase; P-lo 98.2 2.7E-07 9.1E-12 78.4 1.8 33 105-140 25-60 (252)
182 2vp4_A Deoxynucleoside kinase; 98.2 3E-07 1E-11 76.9 1.9 30 101-130 14-43 (230)
183 2ius_A DNA translocase FTSK; n 98.2 1.4E-07 4.7E-12 88.1 -0.5 31 99-129 159-189 (512)
184 1kag_A SKI, shikimate kinase I 98.2 6.9E-07 2.4E-11 70.7 3.3 27 106-132 3-29 (173)
185 1uj2_A Uridine-cytidine kinase 98.2 1.7E-06 5.7E-11 73.3 5.7 120 106-241 21-145 (252)
186 3kl4_A SRP54, signal recogniti 98.2 1.1E-05 3.9E-10 73.7 11.0 27 106-132 96-122 (433)
187 3ney_A 55 kDa erythrocyte memb 98.2 1.2E-06 4.1E-11 71.9 4.0 30 102-131 14-43 (197)
188 1zu4_A FTSY; GTPase, signal re 98.1 1E-06 3.6E-11 77.6 3.7 35 98-132 96-130 (320)
189 2zr9_A Protein RECA, recombina 98.1 4.5E-06 1.5E-10 74.4 7.5 29 103-131 57-85 (349)
190 1nij_A Hypothetical protein YJ 98.1 1E-06 3.5E-11 77.5 2.6 38 107-144 4-47 (318)
191 3cr8_A Sulfate adenylyltranfer 98.1 1E-06 3.6E-11 83.1 2.8 34 103-139 365-398 (552)
192 1fnn_A CDC6P, cell division co 98.1 2.9E-05 1E-09 68.8 11.4 27 106-132 41-69 (389)
193 2ffh_A Protein (FFH); SRP54, s 98.0 1.3E-05 4.3E-10 73.3 8.7 45 80-132 79-123 (425)
194 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 4.4E-06 1.5E-10 65.3 4.5 32 99-131 16-47 (149)
195 3b9p_A CG5977-PA, isoform A; A 98.0 2.8E-05 9.5E-10 66.9 9.5 26 106-131 53-78 (297)
196 3ice_A Transcription terminati 98.0 2.6E-06 8.9E-11 76.7 3.0 53 77-132 133-199 (422)
197 3m6a_A ATP-dependent protease 98.0 1.6E-06 5.5E-11 81.7 1.6 50 78-132 84-133 (543)
198 2xau_A PRE-mRNA-splicing facto 98.0 7.1E-06 2.4E-10 80.4 6.1 45 204-248 186-231 (773)
199 1a7j_A Phosphoribulokinase; tr 98.0 6.6E-06 2.3E-10 71.4 5.1 115 106-238 4-136 (290)
200 4eaq_A DTMP kinase, thymidylat 97.9 5.5E-06 1.9E-10 69.4 4.2 36 97-132 13-51 (229)
201 1cke_A CK, MSSA, protein (cyti 97.9 4.9E-06 1.7E-10 68.6 3.9 34 107-140 5-38 (227)
202 2pez_A Bifunctional 3'-phospho 97.9 6.5E-06 2.2E-10 65.6 4.1 28 105-132 3-30 (179)
203 4a1f_A DNAB helicase, replicat 97.9 1.3E-05 4.5E-10 71.0 6.4 106 96-240 35-141 (338)
204 1jjv_A Dephospho-COA kinase; P 97.8 6.9E-06 2.3E-10 67.0 3.1 22 108-129 3-24 (206)
205 1y63_A LMAJ004144AAA protein; 97.8 1.1E-05 3.8E-10 64.8 3.8 32 99-130 2-33 (184)
206 4ad8_A DNA repair protein RECN 97.8 7.3E-06 2.5E-10 76.6 3.0 35 96-131 50-84 (517)
207 1j8m_F SRP54, signal recogniti 97.8 5.6E-06 1.9E-10 72.1 2.0 46 80-132 77-123 (297)
208 1sxj_C Activator 1 40 kDa subu 97.8 3.5E-06 1.2E-10 74.3 0.7 47 82-132 23-71 (340)
209 2qor_A Guanylate kinase; phosp 97.8 1.1E-05 3.9E-10 65.8 3.5 29 103-131 8-36 (204)
210 2if2_A Dephospho-COA kinase; a 97.8 1.2E-05 4.1E-10 65.3 3.3 21 109-129 3-23 (204)
211 3hr8_A Protein RECA; alpha and 97.8 4.5E-05 1.5E-09 68.1 7.1 30 103-132 57-86 (356)
212 2qtf_A Protein HFLX, GTP-bindi 97.7 2.7E-05 9.3E-10 69.7 5.5 23 109-131 181-203 (364)
213 4fcw_A Chaperone protein CLPB; 97.7 4.9E-05 1.7E-09 65.5 7.0 25 108-132 48-72 (311)
214 2dhr_A FTSH; AAA+ protein, hex 97.7 6.2E-06 2.1E-10 76.8 1.1 49 78-132 41-89 (499)
215 2yvu_A Probable adenylyl-sulfa 97.7 2.4E-05 8.1E-10 62.7 4.3 31 102-132 8-38 (186)
216 2e87_A Hypothetical protein PH 97.7 6.4E-05 2.2E-09 66.9 7.3 46 205-251 228-274 (357)
217 3qks_A DNA double-strand break 97.7 2.7E-05 9.3E-10 63.8 4.5 33 99-132 16-48 (203)
218 1m7g_A Adenylylsulfate kinase; 97.7 1.9E-05 6.7E-10 64.7 3.5 31 102-132 20-50 (211)
219 2www_A Methylmalonic aciduria 97.7 2.1E-05 7.2E-10 70.0 3.7 33 105-140 72-104 (349)
220 3t61_A Gluconokinase; PSI-biol 97.7 2.2E-05 7.6E-10 63.7 3.5 25 107-131 18-42 (202)
221 3h4m_A Proteasome-activating n 97.6 6.4E-05 2.2E-09 64.1 6.0 29 104-132 48-76 (285)
222 3cm0_A Adenylate kinase; ATP-b 97.6 3.4E-05 1.2E-09 61.5 3.7 27 105-131 2-28 (186)
223 1v5w_A DMC1, meiotic recombina 97.6 0.00019 6.6E-09 63.5 8.9 29 103-131 118-146 (343)
224 2z43_A DNA repair and recombin 97.6 7.4E-05 2.5E-09 65.6 5.9 29 103-131 103-131 (324)
225 1q3t_A Cytidylate kinase; nucl 97.6 4.6E-05 1.6E-09 63.6 4.1 38 103-140 12-49 (236)
226 3dm5_A SRP54, signal recogniti 97.5 0.00099 3.4E-08 61.0 12.7 27 106-132 99-125 (443)
227 2gj8_A MNME, tRNA modification 97.5 4E-05 1.4E-09 60.5 3.0 26 106-131 3-28 (172)
228 3kb2_A SPBC2 prophage-derived 97.5 5.3E-05 1.8E-09 59.3 3.6 24 109-132 3-26 (173)
229 3t34_A Dynamin-related protein 97.5 2.9E-05 1E-09 69.1 2.2 47 80-130 11-57 (360)
230 2qag_A Septin-2, protein NEDD5 97.5 1.4E-05 4.8E-10 71.5 -0.0 46 76-131 16-61 (361)
231 1ega_A Protein (GTP-binding pr 97.5 3.8E-05 1.3E-09 66.8 2.6 26 106-131 7-32 (301)
232 2p5t_B PEZT; postsegregational 97.5 4.6E-05 1.6E-09 64.4 2.9 33 98-131 24-56 (253)
233 3bh0_A DNAB-like replicative h 97.5 0.00018 6.3E-09 62.8 6.5 36 96-131 57-92 (315)
234 1np6_A Molybdopterin-guanine d 97.4 8E-05 2.7E-09 59.7 3.7 26 107-132 6-31 (174)
235 1qhx_A CPT, protein (chloramph 97.4 8.3E-05 2.8E-09 58.8 3.8 25 107-131 3-27 (178)
236 1lv7_A FTSH; alpha/beta domain 97.4 7.3E-05 2.5E-09 62.9 3.6 33 98-132 38-70 (257)
237 1m2o_B GTP-binding protein SAR 97.4 7.2E-05 2.5E-09 60.0 3.4 34 96-130 13-46 (190)
238 2z4s_A Chromosomal replication 97.4 0.00012 4.2E-09 67.0 4.8 26 107-132 130-155 (440)
239 2wji_A Ferrous iron transport 97.4 7.4E-05 2.5E-09 58.4 2.8 24 108-131 4-27 (165)
240 2rhm_A Putative kinase; P-loop 97.4 0.00012 4E-09 58.5 3.9 27 105-131 3-29 (193)
241 1vht_A Dephospho-COA kinase; s 97.4 0.00013 4.3E-09 59.9 4.1 24 106-129 3-26 (218)
242 1kht_A Adenylate kinase; phosp 97.4 0.00012 4.1E-09 58.2 3.9 25 107-131 3-27 (192)
243 2ze6_A Isopentenyl transferase 97.4 0.00011 3.8E-09 62.2 3.8 25 108-132 2-26 (253)
244 3lw7_A Adenylate kinase relate 97.3 0.00011 3.7E-09 57.3 3.3 20 108-127 2-21 (179)
245 2jaq_A Deoxyguanosine kinase; 97.3 0.00013 4.4E-09 58.7 3.7 24 109-132 2-25 (205)
246 1via_A Shikimate kinase; struc 97.3 0.00011 3.8E-09 58.1 3.1 24 109-132 6-29 (175)
247 1f6b_A SAR1; gtpases, N-termin 97.3 3.5E-05 1.2E-09 62.3 0.1 41 85-129 7-47 (198)
248 3d3q_A TRNA delta(2)-isopenten 97.3 0.00026 8.9E-09 62.6 5.7 24 108-131 8-31 (340)
249 3r20_A Cytidylate kinase; stru 97.3 0.00014 4.7E-09 61.1 3.7 26 106-131 8-33 (233)
250 1uf9_A TT1252 protein; P-loop, 97.3 0.00015 5.3E-09 58.3 3.9 25 106-130 7-31 (203)
251 3iij_A Coilin-interacting nucl 97.3 0.00013 4.6E-09 57.9 3.2 27 105-131 9-35 (180)
252 2v54_A DTMP kinase, thymidylat 97.3 0.0002 6.8E-09 57.8 4.0 26 106-131 3-28 (204)
253 3trf_A Shikimate kinase, SK; a 97.2 0.00019 6.5E-09 57.1 3.8 26 107-132 5-30 (185)
254 2wjg_A FEOB, ferrous iron tran 97.2 0.00014 4.9E-09 57.5 3.0 23 108-130 8-30 (188)
255 1ly1_A Polynucleotide kinase; 97.2 0.00018 6.3E-09 56.6 3.7 22 108-129 3-24 (181)
256 1ypw_A Transitional endoplasmi 97.2 0.00015 5E-09 71.4 3.7 31 102-132 233-263 (806)
257 2v1u_A Cell division control p 97.2 0.00095 3.3E-08 58.7 8.7 27 105-131 42-68 (387)
258 2plr_A DTMP kinase, probable t 97.2 0.00021 7.3E-09 57.7 4.1 27 106-132 3-29 (213)
259 1gtv_A TMK, thymidylate kinase 97.2 7.6E-05 2.6E-09 60.7 1.3 24 109-132 2-25 (214)
260 2c95_A Adenylate kinase 1; tra 97.2 0.00021 7E-09 57.2 3.8 27 105-131 7-33 (196)
261 1tev_A UMP-CMP kinase; ploop, 97.2 0.00023 7.7E-09 56.7 4.0 25 107-131 3-27 (196)
262 3ake_A Cytidylate kinase; CMP 97.2 0.00021 7.2E-09 57.7 3.7 24 109-132 4-27 (208)
263 2wwf_A Thymidilate kinase, put 97.2 0.00022 7.6E-09 57.8 3.8 27 105-131 8-34 (212)
264 3cf0_A Transitional endoplasmi 97.2 0.00021 7.1E-09 61.9 3.5 31 102-132 44-74 (301)
265 1gvn_B Zeta; postsegregational 97.2 0.00025 8.4E-09 61.3 3.9 28 104-131 30-57 (287)
266 1xjc_A MOBB protein homolog; s 97.2 0.00026 8.9E-09 56.5 3.7 25 108-132 5-29 (169)
267 2zej_A Dardarin, leucine-rich 97.2 0.00014 4.7E-09 57.8 2.1 23 109-131 4-26 (184)
268 1nn5_A Similar to deoxythymidy 97.2 0.00026 8.9E-09 57.4 3.8 27 105-131 7-33 (215)
269 3auy_A DNA double-strand break 97.1 0.0003 1E-08 62.8 4.1 31 98-129 17-47 (371)
270 1ex7_A Guanylate kinase; subst 97.1 0.00025 8.6E-09 57.4 3.2 23 109-131 3-25 (186)
271 2vli_A Antibiotic resistance p 97.1 0.0002 6.8E-09 56.7 2.6 26 106-131 4-29 (183)
272 1nks_A Adenylate kinase; therm 97.1 0.00029 1E-08 55.9 3.4 23 109-131 3-25 (194)
273 2bwj_A Adenylate kinase 5; pho 97.1 0.00032 1.1E-08 56.2 3.6 28 104-131 9-36 (199)
274 2z0h_A DTMP kinase, thymidylat 97.1 0.00034 1.2E-08 56.0 3.7 23 109-131 2-24 (197)
275 2dy1_A Elongation factor G; tr 97.1 0.00028 9.5E-09 68.0 3.5 32 101-132 3-34 (665)
276 1aky_A Adenylate kinase; ATP:A 97.0 0.00044 1.5E-08 56.8 4.0 26 106-131 3-28 (220)
277 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00046 1.6E-08 62.3 4.4 28 103-130 18-45 (396)
278 2cdn_A Adenylate kinase; phosp 97.0 0.00051 1.7E-08 55.5 4.1 26 106-131 19-44 (201)
279 1ukz_A Uridylate kinase; trans 97.0 0.00045 1.5E-08 55.8 3.7 27 105-131 13-39 (203)
280 1zuh_A Shikimate kinase; alpha 97.0 0.00051 1.7E-08 53.8 3.8 25 107-131 7-31 (168)
281 3lxx_A GTPase IMAP family memb 97.0 0.00034 1.2E-08 58.2 2.8 25 108-132 30-54 (239)
282 3a8t_A Adenylate isopentenyltr 97.0 0.00089 3E-08 59.2 5.6 26 106-131 39-64 (339)
283 1qf9_A UMP/CMP kinase, protein 97.0 0.00049 1.7E-08 54.6 3.6 25 107-131 6-30 (194)
284 2pbr_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 54.7 3.7 23 109-131 2-24 (195)
285 3exa_A TRNA delta(2)-isopenten 97.0 0.00083 2.8E-08 58.8 5.2 25 107-131 3-27 (322)
286 3fb4_A Adenylate kinase; psych 96.9 0.0005 1.7E-08 56.0 3.7 23 109-131 2-24 (216)
287 2iyv_A Shikimate kinase, SK; t 96.9 0.00041 1.4E-08 55.1 3.0 25 108-132 3-27 (184)
288 1zd8_A GTP:AMP phosphotransfer 96.9 0.00048 1.6E-08 56.8 3.5 27 105-131 5-31 (227)
289 1e6c_A Shikimate kinase; phosp 96.9 0.00044 1.5E-08 54.1 3.2 24 108-131 3-26 (173)
290 3crm_A TRNA delta(2)-isopenten 96.9 0.001 3.4E-08 58.5 5.6 24 108-131 6-29 (323)
291 3k53_A Ferrous iron transport 96.9 0.00039 1.3E-08 59.2 2.7 24 108-131 4-27 (271)
292 2pt5_A Shikimate kinase, SK; a 96.9 0.00063 2.1E-08 53.0 3.7 23 109-131 2-24 (168)
293 1zak_A Adenylate kinase; ATP:A 96.9 0.00052 1.8E-08 56.3 3.2 27 106-132 4-30 (222)
294 3dl0_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 55.6 3.6 23 109-131 2-24 (216)
295 3foz_A TRNA delta(2)-isopenten 96.9 0.0014 4.6E-08 57.3 5.9 25 107-131 10-34 (316)
296 3umf_A Adenylate kinase; rossm 96.9 0.00066 2.3E-08 56.3 3.8 32 101-132 23-54 (217)
297 3tlx_A Adenylate kinase 2; str 96.9 0.00072 2.5E-08 56.7 4.0 27 105-131 27-53 (243)
298 2grj_A Dephospho-COA kinase; T 96.8 0.00064 2.2E-08 55.2 3.4 25 107-131 12-36 (192)
299 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00072 2.5E-08 57.2 3.8 26 106-131 3-28 (260)
300 1mky_A Probable GTP-binding pr 96.8 0.00047 1.6E-08 63.0 2.8 24 108-131 181-204 (439)
301 2f6r_A COA synthase, bifunctio 96.8 0.00078 2.7E-08 57.8 3.6 24 106-129 74-97 (281)
302 2ged_A SR-beta, signal recogni 96.8 0.00078 2.7E-08 53.4 3.4 25 107-131 48-72 (193)
303 1z2a_A RAS-related protein RAB 96.7 0.00089 3E-08 51.5 3.3 23 109-131 7-29 (168)
304 3eph_A TRNA isopentenyltransfe 96.7 0.0019 6.4E-08 58.4 5.8 25 108-132 3-27 (409)
305 2q6t_A DNAB replication FORK h 96.7 0.003 1E-07 57.6 7.3 36 96-131 189-224 (444)
306 3bos_A Putative DNA replicatio 96.7 0.0011 3.8E-08 54.2 4.0 27 106-132 51-77 (242)
307 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 54.9 3.7 23 109-131 2-24 (223)
308 3llm_A ATP-dependent RNA helic 96.7 0.00061 2.1E-08 56.6 2.4 28 103-130 72-99 (235)
309 2dyk_A GTP-binding protein; GT 96.7 0.001 3.4E-08 50.9 3.4 23 109-131 3-25 (161)
310 1kao_A RAP2A; GTP-binding prot 96.7 0.001 3.5E-08 50.9 3.4 23 109-131 5-27 (167)
311 2xxa_A Signal recognition part 96.7 0.028 9.4E-07 51.3 13.4 28 105-132 98-125 (433)
312 1u8z_A RAS-related protein RAL 96.7 0.001 3.5E-08 50.9 3.3 23 109-131 6-28 (168)
313 2ce2_X GTPase HRAS; signaling 96.7 0.00092 3.2E-08 51.0 3.0 23 109-131 5-27 (166)
314 2qmh_A HPR kinase/phosphorylas 96.7 0.0016 5.6E-08 53.3 4.6 35 96-131 24-58 (205)
315 2qby_A CDC6 homolog 1, cell di 96.7 0.00091 3.1E-08 58.7 3.3 28 105-132 43-70 (386)
316 1z0j_A RAB-22, RAS-related pro 96.6 0.0011 3.9E-08 51.0 3.4 23 109-131 8-30 (170)
317 1z08_A RAS-related protein RAB 96.6 0.0011 3.9E-08 51.0 3.4 23 109-131 8-30 (170)
318 1ky3_A GTP-binding protein YPT 96.6 0.0012 4E-08 51.5 3.4 24 108-131 9-32 (182)
319 3b1v_A Ferrous iron uptake tra 96.6 0.00088 3E-08 57.3 2.8 24 108-131 4-27 (272)
320 1ek0_A Protein (GTP-binding pr 96.6 0.0012 4E-08 50.8 3.3 23 109-131 5-27 (170)
321 1c1y_A RAS-related protein RAP 96.6 0.0012 4E-08 50.7 3.3 23 109-131 5-27 (167)
322 2lkc_A Translation initiation 96.6 0.0013 4.3E-08 51.2 3.5 26 106-131 7-32 (178)
323 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0012 4.1E-08 51.3 3.4 23 109-131 9-31 (177)
324 3be4_A Adenylate kinase; malar 96.6 0.0012 4E-08 54.2 3.4 25 107-131 5-29 (217)
325 1g16_A RAS-related protein SEC 96.6 0.0011 3.8E-08 51.0 3.0 23 109-131 5-27 (170)
326 2erx_A GTP-binding protein DI- 96.6 0.001 3.5E-08 51.2 2.8 22 109-130 5-26 (172)
327 2nzj_A GTP-binding protein REM 96.6 0.00094 3.2E-08 51.8 2.6 23 109-131 6-28 (175)
328 2fn4_A P23, RAS-related protei 96.6 0.0012 4E-08 51.4 3.1 24 108-131 10-33 (181)
329 2h92_A Cytidylate kinase; ross 96.6 0.0012 4.2E-08 53.8 3.3 25 107-131 3-27 (219)
330 4edh_A DTMP kinase, thymidylat 96.6 0.0016 5.6E-08 53.6 4.1 28 105-132 4-31 (213)
331 4ag6_A VIRB4 ATPase, type IV s 96.6 0.0017 5.9E-08 58.1 4.5 32 106-140 34-65 (392)
332 2w58_A DNAI, primosome compone 96.6 0.0015 5.3E-08 52.5 3.8 25 108-132 55-79 (202)
333 1e4v_A Adenylate kinase; trans 96.5 0.0013 4.6E-08 53.6 3.4 23 109-131 2-24 (214)
334 1ak2_A Adenylate kinase isoenz 96.5 0.0018 6E-08 53.7 4.1 27 106-132 15-41 (233)
335 1r2q_A RAS-related protein RAB 96.5 0.0014 4.8E-08 50.3 3.3 23 109-131 8-30 (170)
336 2oil_A CATX-8, RAS-related pro 96.5 0.0014 4.8E-08 52.0 3.3 23 109-131 27-49 (193)
337 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.6E-08 50.4 4.1 28 105-132 41-68 (195)
338 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0015 5E-08 51.3 3.4 23 109-131 6-28 (189)
339 1ltq_A Polynucleotide kinase; 96.5 0.0015 5E-08 56.1 3.6 23 108-130 3-25 (301)
340 3clv_A RAB5 protein, putative; 96.5 0.0015 5E-08 51.7 3.4 24 108-131 8-31 (208)
341 3bc1_A RAS-related protein RAB 96.5 0.0015 5E-08 51.4 3.3 23 109-131 13-35 (195)
342 1ko7_A HPR kinase/phosphatase; 96.5 0.002 6.9E-08 56.3 4.5 33 96-129 134-166 (314)
343 3v9p_A DTMP kinase, thymidylat 96.5 0.0014 4.8E-08 54.7 3.3 28 105-132 23-50 (227)
344 3q85_A GTP-binding protein REM 96.5 0.0011 3.8E-08 51.1 2.5 23 109-131 4-26 (169)
345 3lv8_A DTMP kinase, thymidylat 96.5 0.0017 5.8E-08 54.5 3.7 27 106-132 26-52 (236)
346 3t1o_A Gliding protein MGLA; G 96.5 0.0016 5.4E-08 51.4 3.3 24 109-132 16-39 (198)
347 1r8s_A ADP-ribosylation factor 96.5 0.0016 5.6E-08 49.9 3.3 23 109-131 2-24 (164)
348 3q72_A GTP-binding protein RAD 96.5 0.0008 2.7E-08 51.8 1.5 23 109-131 4-26 (166)
349 2r8r_A Sensor protein; KDPD, P 96.5 0.0034 1.2E-07 52.3 5.4 26 106-131 4-30 (228)
350 2a9k_A RAS-related protein RAL 96.5 0.0017 5.7E-08 50.8 3.3 24 108-131 19-42 (187)
351 1upt_A ARL1, ADP-ribosylation 96.5 0.0023 7.9E-08 49.3 4.0 25 107-131 7-31 (171)
352 1svi_A GTP-binding protein YSX 96.4 0.0011 3.9E-08 52.5 2.3 24 107-130 23-46 (195)
353 1fzq_A ADP-ribosylation factor 96.4 0.00084 2.9E-08 53.1 1.5 24 107-130 16-39 (181)
354 1z0f_A RAB14, member RAS oncog 96.4 0.0017 6E-08 50.3 3.3 24 108-131 16-39 (179)
355 3con_A GTPase NRAS; structural 96.4 0.0017 5.9E-08 51.3 3.3 23 109-131 23-45 (190)
356 2g6b_A RAS-related protein RAB 96.4 0.0018 6E-08 50.5 3.3 23 109-131 12-34 (180)
357 3ihw_A Centg3; RAS, centaurin, 96.4 0.0018 6E-08 51.4 3.4 22 109-130 22-43 (184)
358 3pqc_A Probable GTP-binding pr 96.4 0.0012 4.1E-08 52.1 2.3 24 108-131 24-47 (195)
359 2y8e_A RAB-protein 6, GH09086P 96.4 0.0016 5.5E-08 50.5 3.0 23 109-131 16-38 (179)
360 3lxw_A GTPase IMAP family memb 96.4 0.0014 4.8E-08 55.0 2.8 24 108-131 22-45 (247)
361 3tw8_B RAS-related protein RAB 96.4 0.001 3.6E-08 51.7 1.9 23 109-131 11-33 (181)
362 3sr0_A Adenylate kinase; phosp 96.4 0.0018 6.3E-08 53.0 3.4 24 109-132 2-25 (206)
363 2hxs_A RAB-26, RAS-related pro 96.4 0.0016 5.6E-08 50.6 3.0 23 109-131 8-30 (178)
364 2ocp_A DGK, deoxyguanosine kin 96.4 0.0021 7.1E-08 53.5 3.7 26 106-131 1-26 (241)
365 3zvl_A Bifunctional polynucleo 96.4 0.0017 5.8E-08 58.9 3.4 30 102-131 253-282 (416)
366 4tmk_A Protein (thymidylate ki 96.4 0.0021 7.3E-08 52.9 3.7 27 106-132 2-28 (213)
367 1ypw_A Transitional endoplasmi 96.4 0.00084 2.9E-08 66.0 1.4 33 100-132 504-536 (806)
368 2efe_B Small GTP-binding prote 96.4 0.002 6.8E-08 50.3 3.4 23 109-131 14-36 (181)
369 2dby_A GTP-binding protein; GD 96.4 0.0017 5.9E-08 58.0 3.3 23 109-131 3-25 (368)
370 2bov_A RAla, RAS-related prote 96.4 0.002 6.8E-08 51.4 3.3 24 108-131 15-38 (206)
371 1nrj_B SR-beta, signal recogni 96.4 0.002 6.7E-08 52.2 3.3 24 108-131 13-36 (218)
372 3vfd_A Spastin; ATPase, microt 96.4 0.0078 2.7E-07 53.7 7.6 26 106-131 147-172 (389)
373 1vg8_A RAS-related protein RAB 96.4 0.002 7E-08 51.5 3.4 24 108-131 9-32 (207)
374 2cxx_A Probable GTP-binding pr 96.4 0.0013 4.4E-08 51.8 2.1 23 109-131 3-25 (190)
375 2bme_A RAB4A, RAS-related prot 96.4 0.0019 6.3E-08 50.7 3.0 24 108-131 11-34 (186)
376 1wf3_A GTP-binding protein; GT 96.4 0.0017 5.9E-08 56.3 3.0 23 109-131 9-31 (301)
377 3ld9_A DTMP kinase, thymidylat 96.4 0.0028 9.4E-08 52.7 4.2 28 105-132 19-46 (223)
378 2gf9_A RAS-related protein RAB 96.4 0.0021 7.1E-08 50.9 3.3 23 109-131 24-46 (189)
379 2wsm_A Hydrogenase expression/ 96.4 0.002 6.9E-08 52.3 3.3 26 106-131 29-54 (221)
380 1sxj_D Activator 1 41 kDa subu 96.4 0.0011 3.9E-08 57.7 1.9 34 98-131 47-82 (353)
381 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0019 6.6E-08 50.9 3.0 23 109-131 9-31 (184)
382 3tkl_A RAS-related protein RAB 96.3 0.0021 7.3E-08 50.8 3.3 23 109-131 18-40 (196)
383 3kkq_A RAS-related protein M-R 96.3 0.0022 7.4E-08 50.3 3.3 24 108-131 19-42 (183)
384 1jal_A YCHF protein; nucleotid 96.3 0.0023 8E-08 57.0 3.8 24 107-130 2-25 (363)
385 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0023 7.7E-08 50.1 3.3 23 109-131 7-29 (186)
386 3iev_A GTP-binding protein ERA 96.3 0.0018 6.3E-08 56.2 3.0 24 108-131 11-34 (308)
387 2fg5_A RAB-22B, RAS-related pr 96.3 0.0021 7.1E-08 51.2 3.1 23 109-131 25-47 (192)
388 2gf0_A GTP-binding protein DI- 96.3 0.0021 7.1E-08 51.0 3.1 24 108-131 9-32 (199)
389 1qvr_A CLPB protein; coiled co 96.3 0.006 2E-07 60.3 6.9 25 108-132 589-613 (854)
390 3tmk_A Thymidylate kinase; pho 96.3 0.0027 9.1E-08 52.5 3.8 28 105-132 3-30 (216)
391 2cjw_A GTP-binding protein GEM 96.3 0.0023 7.8E-08 51.2 3.3 23 109-131 8-30 (192)
392 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.003 1E-07 52.7 4.2 28 105-132 37-64 (262)
393 1l8q_A Chromosomal replication 96.3 0.002 6.7E-08 56.0 3.1 27 106-132 36-62 (324)
394 3tqf_A HPR(Ser) kinase; transf 96.3 0.0035 1.2E-07 50.1 4.2 33 96-129 6-38 (181)
395 1njg_A DNA polymerase III subu 96.3 0.0028 9.6E-08 51.3 3.8 25 108-132 46-70 (250)
396 1z06_A RAS-related protein RAB 96.3 0.0025 8.6E-08 50.4 3.4 24 108-131 21-44 (189)
397 3iby_A Ferrous iron transport 96.3 0.0019 6.5E-08 54.6 2.8 23 109-131 3-25 (256)
398 2p65_A Hypothetical protein PF 96.3 0.0025 8.4E-08 49.8 3.2 27 106-132 42-68 (187)
399 2a5j_A RAS-related protein RAB 96.3 0.0026 8.7E-08 50.5 3.3 23 109-131 23-45 (191)
400 3t5g_A GTP-binding protein RHE 96.2 0.0023 8E-08 50.0 3.0 22 109-130 8-29 (181)
401 3oes_A GTPase rhebl1; small GT 96.2 0.0023 7.8E-08 51.3 3.0 25 107-131 24-48 (201)
402 3dz8_A RAS-related protein RAB 96.2 0.0023 8E-08 50.7 3.0 23 109-131 25-47 (191)
403 2ew1_A RAS-related protein RAB 96.2 0.0024 8.1E-08 51.6 3.0 23 109-131 28-50 (201)
404 2atv_A RERG, RAS-like estrogen 96.2 0.0027 9.4E-08 50.5 3.4 25 107-131 28-52 (196)
405 1zd9_A ADP-ribosylation factor 96.2 0.0028 9.4E-08 50.2 3.3 24 108-131 23-46 (188)
406 3reg_A RHO-like small GTPase; 96.2 0.0028 9.5E-08 50.3 3.3 24 108-131 24-47 (194)
407 1x3s_A RAS-related protein RAB 96.2 0.0028 9.7E-08 50.0 3.3 24 108-131 16-39 (195)
408 3a1s_A Iron(II) transport prot 96.2 0.0023 7.7E-08 54.2 2.8 23 109-131 7-29 (258)
409 2xtp_A GTPase IMAP family memb 96.2 0.0022 7.7E-08 53.7 2.8 25 107-131 22-46 (260)
410 2r62_A Cell division protease 96.2 0.0012 4.1E-08 55.6 1.1 33 98-132 37-69 (268)
411 2bcg_Y Protein YP2, GTP-bindin 96.2 0.0026 9E-08 51.0 3.0 23 109-131 10-32 (206)
412 3cph_A RAS-related protein SEC 96.2 0.003 1E-07 50.7 3.3 25 107-131 20-44 (213)
413 1moz_A ARL1, ADP-ribosylation 96.2 0.0022 7.4E-08 50.2 2.4 24 106-129 17-40 (183)
414 3bwd_D RAC-like GTP-binding pr 96.2 0.0038 1.3E-07 48.6 3.9 24 108-131 9-32 (182)
415 1zbd_A Rabphilin-3A; G protein 96.2 0.0025 8.5E-08 51.0 2.8 23 109-131 10-32 (203)
416 1ksh_A ARF-like protein 2; sma 96.1 0.0021 7.3E-08 50.5 2.3 26 106-131 17-42 (186)
417 2iwr_A Centaurin gamma 1; ANK 96.1 0.0023 7.9E-08 49.9 2.5 24 108-131 8-31 (178)
418 1p5z_B DCK, deoxycytidine kina 96.1 0.0017 5.6E-08 54.9 1.7 27 105-131 22-48 (263)
419 2fv8_A H6, RHO-related GTP-bin 96.1 0.0026 8.8E-08 51.3 2.8 34 98-131 16-49 (207)
420 3c5c_A RAS-like protein 12; GD 96.1 0.0034 1.1E-07 49.8 3.4 24 108-131 22-45 (187)
421 3cbq_A GTP-binding protein REM 96.1 0.0015 5.1E-08 52.4 1.3 24 108-131 24-47 (195)
422 4hlc_A DTMP kinase, thymidylat 96.1 0.0043 1.5E-07 50.8 4.0 26 107-132 2-27 (205)
423 1gwn_A RHO-related GTP-binding 96.1 0.003 1E-07 51.1 3.0 23 109-131 30-52 (205)
424 2i1q_A DNA repair and recombin 96.1 0.0033 1.1E-07 54.7 3.4 28 103-130 94-121 (322)
425 2p5s_A RAS and EF-hand domain 96.1 0.0041 1.4E-07 49.6 3.8 26 106-131 27-52 (199)
426 3i8s_A Ferrous iron transport 96.1 0.0027 9.3E-08 54.1 2.8 24 108-131 4-27 (274)
427 1zj6_A ADP-ribosylation factor 96.1 0.0027 9.2E-08 50.1 2.5 25 106-130 15-39 (187)
428 3t5d_A Septin-7; GTP-binding p 96.0 0.0019 6.5E-08 54.9 1.7 23 109-131 10-32 (274)
429 2fh5_B SR-beta, signal recogni 96.0 0.0036 1.2E-07 50.5 3.3 24 108-131 8-31 (214)
430 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0039 1.3E-07 57.4 3.9 36 96-132 141-176 (473)
431 2o52_A RAS-related protein RAB 96.0 0.0025 8.6E-08 51.1 2.3 22 109-130 27-48 (200)
432 2h17_A ADP-ribosylation factor 96.0 0.0025 8.5E-08 50.1 2.0 23 108-130 22-44 (181)
433 2hf9_A Probable hydrogenase ni 96.0 0.0039 1.3E-07 50.8 3.3 26 106-131 37-62 (226)
434 3bgw_A DNAB-like replicative h 96.0 0.024 8E-07 51.8 8.8 35 97-131 187-221 (444)
435 2zts_A Putative uncharacterize 96.0 0.0045 1.5E-07 51.0 3.7 26 103-128 26-51 (251)
436 2gco_A H9, RHO-related GTP-bin 96.0 0.0037 1.3E-07 50.1 3.0 23 109-131 27-49 (201)
437 2v3c_C SRP54, signal recogniti 96.0 0.0029 9.9E-08 57.8 2.6 26 107-132 99-124 (432)
438 2il1_A RAB12; G-protein, GDP, 96.0 0.0024 8.1E-08 50.9 1.8 23 109-131 28-50 (192)
439 2f7s_A C25KG, RAS-related prot 96.0 0.0032 1.1E-07 50.9 2.6 23 109-131 27-49 (217)
440 2atx_A Small GTP binding prote 95.9 0.004 1.4E-07 49.3 3.1 23 109-131 20-42 (194)
441 2qu8_A Putative nucleolar GTP- 95.9 0.0029 1E-07 51.9 2.3 25 107-131 29-53 (228)
442 1jwy_B Dynamin A GTPase domain 95.9 0.0034 1.1E-07 54.1 2.7 24 108-131 25-48 (315)
443 2fu5_C RAS-related protein RAB 95.9 0.0024 8.3E-08 50.0 1.7 24 108-131 9-32 (183)
444 4bas_A ADP-ribosylation factor 95.9 0.0027 9.1E-08 50.4 1.9 25 107-131 17-41 (199)
445 2h57_A ADP-ribosylation factor 95.9 0.002 6.8E-08 51.0 1.1 25 107-131 21-45 (190)
446 4dhe_A Probable GTP-binding pr 95.9 0.0015 5E-08 53.2 0.3 25 107-131 29-53 (223)
447 2q3h_A RAS homolog gene family 95.9 0.0036 1.2E-07 49.9 2.5 24 107-130 20-43 (201)
448 3t15_A Ribulose bisphosphate c 95.9 0.0055 1.9E-07 52.7 3.8 29 104-132 33-61 (293)
449 2j1l_A RHO-related GTP-binding 95.8 0.0034 1.2E-07 50.9 2.3 23 108-130 35-57 (214)
450 2hup_A RAS-related protein RAB 95.8 0.0047 1.6E-07 49.6 3.1 23 109-131 31-53 (201)
451 3p32_A Probable GTPase RV1496/ 95.8 0.0064 2.2E-07 53.8 4.2 27 105-131 77-103 (355)
452 1u94_A RECA protein, recombina 95.8 0.0055 1.9E-07 54.5 3.8 28 104-131 60-87 (356)
453 3llu_A RAS-related GTP-binding 95.8 0.0036 1.2E-07 49.9 2.3 24 108-131 21-44 (196)
454 3cpj_B GTP-binding protein YPT 95.8 0.0054 1.9E-07 50.0 3.4 23 109-131 15-37 (223)
455 3n70_A Transport activator; si 95.8 0.0059 2E-07 46.6 3.3 27 105-131 22-48 (145)
456 3syl_A Protein CBBX; photosynt 95.8 0.0064 2.2E-07 52.0 3.8 27 106-132 66-92 (309)
457 4gzl_A RAS-related C3 botulinu 95.7 0.0053 1.8E-07 49.4 3.0 24 107-130 30-53 (204)
458 2g3y_A GTP-binding protein GEM 95.7 0.0046 1.6E-07 50.6 2.6 22 109-130 39-60 (211)
459 3q3j_B RHO-related GTP-binding 95.7 0.0061 2.1E-07 49.5 3.3 25 107-131 27-51 (214)
460 3def_A T7I23.11 protein; chlor 95.7 0.0049 1.7E-07 52.0 2.8 24 108-131 37-60 (262)
461 2aka_B Dynamin-1; fusion prote 95.7 0.0041 1.4E-07 53.0 2.3 24 108-131 27-50 (299)
462 2chg_A Replication factor C sm 95.7 0.0066 2.2E-07 48.5 3.4 23 109-131 40-62 (226)
463 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0075 2.6E-07 52.6 4.0 27 105-131 43-69 (322)
464 3gmt_A Adenylate kinase; ssgci 95.7 0.0066 2.3E-07 50.7 3.5 25 108-132 9-33 (230)
465 2j0v_A RAC-like GTP-binding pr 95.6 0.0061 2.1E-07 49.0 3.0 24 108-131 10-33 (212)
466 2yc2_C IFT27, small RAB-relate 95.6 0.0024 8.1E-08 51.0 0.5 23 108-130 21-43 (208)
467 2orw_A Thymidine kinase; TMTK, 95.6 0.0072 2.5E-07 48.4 3.4 26 106-131 2-28 (184)
468 1h65_A Chloroplast outer envel 95.6 0.0049 1.7E-07 52.2 2.5 24 108-131 40-63 (270)
469 3cnl_A YLQF, putative uncharac 95.6 0.0059 2E-07 51.9 2.8 24 108-131 100-123 (262)
470 4djt_A GTP-binding nuclear pro 95.5 0.0023 7.9E-08 51.8 -0.0 22 109-130 13-34 (218)
471 1tue_A Replication protein E1; 95.5 0.0079 2.7E-07 49.4 3.2 29 104-132 55-83 (212)
472 1g8f_A Sulfate adenylyltransfe 95.5 0.0082 2.8E-07 55.9 3.7 28 105-132 393-420 (511)
473 3hws_A ATP-dependent CLP prote 95.5 0.008 2.7E-07 53.1 3.4 27 106-132 50-76 (363)
474 3pvs_A Replication-associated 95.5 0.0025 8.7E-08 58.4 0.1 30 103-132 44-75 (447)
475 1m8p_A Sulfate adenylyltransfe 95.5 0.0099 3.4E-07 56.2 4.2 27 105-131 394-420 (573)
476 1ofh_A ATP-dependent HSL prote 95.5 0.0089 3E-07 50.9 3.5 26 107-132 50-75 (310)
477 2b6h_A ADP-ribosylation factor 95.4 0.0091 3.1E-07 47.5 3.4 24 106-129 28-51 (192)
478 4dcu_A GTP-binding protein ENG 95.4 0.0045 1.5E-07 56.7 1.7 24 108-131 24-47 (456)
479 3uk6_A RUVB-like 2; hexameric 95.4 0.009 3.1E-07 52.4 3.5 28 105-132 68-95 (368)
480 1d2n_A N-ethylmaleimide-sensit 95.4 0.01 3.4E-07 50.1 3.6 28 105-132 62-89 (272)
481 3d8b_A Fidgetin-like protein 1 95.4 0.011 3.9E-07 52.1 4.1 28 105-132 115-142 (357)
482 1x6v_B Bifunctional 3'-phospho 95.4 0.011 3.7E-07 56.5 4.1 26 106-131 51-76 (630)
483 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.0096 3.3E-07 52.3 3.3 28 103-130 119-146 (331)
484 3eie_A Vacuolar protein sortin 95.3 0.012 4.2E-07 51.0 4.0 27 106-132 50-76 (322)
485 2x77_A ADP-ribosylation factor 95.3 0.0058 2E-07 48.2 1.7 24 106-129 21-44 (189)
486 4b4t_K 26S protease regulatory 95.3 0.012 4.1E-07 53.6 3.9 30 103-132 202-231 (428)
487 2qby_B CDC6 homolog 3, cell di 95.3 0.012 4.1E-07 51.7 3.8 26 106-131 44-69 (384)
488 4b4t_M 26S protease regulatory 95.2 0.013 4.4E-07 53.5 3.9 30 103-132 211-240 (434)
489 4b4t_L 26S protease subunit RP 95.2 0.013 4.4E-07 53.5 3.9 30 103-132 211-240 (437)
490 3cmu_A Protein RECA, recombina 95.1 0.096 3.3E-06 56.0 10.7 28 104-131 1424-1451(2050)
491 2j37_W Signal recognition part 95.1 0.014 4.9E-07 54.2 4.0 28 105-132 99-126 (504)
492 3gj0_A GTP-binding nuclear pro 95.1 0.008 2.7E-07 48.8 2.0 23 109-131 17-40 (221)
493 2qp9_X Vacuolar protein sortin 95.1 0.013 4.5E-07 51.8 3.5 27 106-132 83-109 (355)
494 2axn_A 6-phosphofructo-2-kinas 95.1 0.016 5.5E-07 54.1 4.2 26 106-131 34-59 (520)
495 3pxi_A Negative regulator of g 95.1 0.036 1.2E-06 53.9 6.9 82 110-253 524-605 (758)
496 2qgz_A Helicase loader, putati 95.0 0.016 5.5E-07 50.2 3.9 25 107-131 152-176 (308)
497 1g41_A Heat shock protein HSLU 95.0 0.013 4.6E-07 53.5 3.5 25 108-132 51-75 (444)
498 3pfi_A Holliday junction ATP-d 95.0 0.014 4.7E-07 50.7 3.4 25 108-132 56-80 (338)
499 3fdi_A Uncharacterized protein 95.0 0.015 5.1E-07 47.2 3.4 26 107-132 6-31 (201)
500 3th5_A RAS-related C3 botulinu 94.0 0.0041 1.4E-07 49.8 0.0 24 107-130 30-53 (204)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.9e-38 Score=281.56 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=144.1
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
++++|+++||++.|+.....+.+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 35689999999999753333457899999999999999999999999999999999998 99999 6777432
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
+...|. ++++...++ .+++.+++.+.....+.+......++.++++.+++. .+.++.+|||||||||+|
T Consensus 98 ~~~~~~r~~Ig~-v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 98 SELTKARRQIGM-IFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHHHTTEEE-ECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHHHhCcEEE-EeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 134665 666643332 379999999877766665444556788899998886 578899999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||+.+|++||+||||++||+..++.+.++|.+
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998863
No 2
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9e-38 Score=264.57 Aligned_cols=169 Identities=17% Similarity=0.098 Sum_probs=136.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
+++++++||++.|++. . +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 2 ~~~l~~~~l~~~y~~~--~--~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 2 AEILRAENIKKVIRGY--E--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp CEEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred CcEEEEEeEEEEECCE--e--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 4579999999999873 2 6699999999999999999999999999999999998 99999 66664321
Q ss_pred -------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 149 -------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
...++ +.++...++ .+++.+++.+.....+.........+.++++.+++. .+.++.+||||||||+++
T Consensus 75 ~~~~~~~~~i~~-v~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 75 ELSLLRNRKLGF-VFQFHYLIP--ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHEEE-ECSSCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHhCcEEE-EecCcccCC--CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 12454 566543322 378999988765544433223345677889988876 466788999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+|++.+|++|||||||++||+..++.+.+++.+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 185 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998853
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-37 Score=281.04 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=141.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+|+++||+|.|++.. +|+++||++++||+++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45799999999998743 6799999999999999999999999999999999998 99999 6776432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+|||||||||+|||||+.
T Consensus 74 ~r~ig~-VfQ~~~-l~-p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 74 ERGVGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp GSCEEE-ECTTCC-CC-TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HCCEEE-EecCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 123564 666543 33 2379999999887777765555566788899988886 578889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|+||||||||++||+..+.++.++|.+
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.5e-38 Score=280.69 Aligned_cols=166 Identities=11% Similarity=0.170 Sum_probs=137.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|+++||+|.|++.. +|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 4799999999998743 6799999999999999999999999999999999998 99999 6666321
Q ss_pred ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366 148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+|||||||||+||||
T Consensus 76 ~~~~r~ig~-vfQ~~~-l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 76 PVRERRLGY-LVQEGV-LF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CGGGSCCEE-ECTTCC-CC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred chhhCCEEE-EeCCCc-CC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 134565 666543 33 2379999987755444444444556788899988886 578889999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
|+.+|++|||||||++||+..+.++++.+
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l 181 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDM 181 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 99999999999999999999999998755
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4e-37 Score=262.36 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=135.2
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
+|+++||++.|++......+|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999853222336799999999999999999999999999999999998 99999 66764321
Q ss_pred -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc---CCCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhH
Q 025366 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 217 (254)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~---g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv 217 (254)
...|+ +.++...++ .+++.+++.+..... +.........+.++++.+++.. +.++.+|||||+||+
T Consensus 78 ~~~~~~~i~~-v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 78 TKIRRDKIGF-VFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHHHHHEEE-ECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred HHHhhccEEE-EecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence 12555 666654332 378999987755432 1122223455678888888752 668899999999999
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|+||+.+|++||+||||++||+..++++.+++.+
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 190 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998853
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-37 Score=267.71 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=135.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
+++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 22 ~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred hheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence 45799999999998633 6699999999999999999999999999999999997 99999 66764321
Q ss_pred -----CCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
...++ +.++...+ +.+++.+++.+.. ...+.........+.++++.+++. .+.++.+||||||||+++|
T Consensus 95 ~~~~~~~i~~-v~Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 95 LNKVREEVGM-VFQRFNLF--PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp HHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred HHHHhCcEEE-EeCCCcCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence 12454 66654332 2378999988743 333432222345677888888875 4677889999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+.+|++|||||||++||+..++.+.++|.+
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998853
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.7e-37 Score=269.08 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=139.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
++|+++||++.|++.. . +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 6 ~~l~i~~ls~~y~~~~-~--~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~ 79 (275)
T 3gfo_A 6 YILKVEELNYNYSDGT-H--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI 79 (275)
T ss_dssp EEEEEEEEEEECTTSC-E--EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred cEEEEEEEEEEECCCC-e--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence 4799999999997531 2 6699999999999999999999999999999999998 99999 6777533
Q ss_pred ---CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366 148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 148 ---~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~ 221 (254)
....|+ +.++.. .++ .+++.+++.+.....+.+.......+.++++.+++. .+.++.+||||||||++||+
T Consensus 80 ~~~~~~ig~-v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 80 MKLRESIGI-VFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHHSEEE-ECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred HHHhCcEEE-EEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence 123565 666532 223 268999998877666654444456678889988886 56788899999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+.+|++|||||||++||+..++.+.+++.+
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~ 188 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE 188 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998853
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-37 Score=265.76 Aligned_cols=170 Identities=13% Similarity=0.091 Sum_probs=136.8
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
.|++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence 388999999999998633 6699999999999999999999999999999999997 99999 5666432
Q ss_pred --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
....++ +.++...+. .+++.+++.+.....+.........+.++++.+++. .+.++.+||+||+||+++|+||
T Consensus 85 ~~~~~i~~-v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 85 EVRKLISY-LPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHTTEEE-ECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhcEEE-EcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 124565 666544322 378999988765444433222234677888888876 4677889999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.+|++|||||||++||+..++.+.++|.+
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 191 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQ 191 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999998853
No 9
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-36 Score=273.63 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=139.5
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 34699999999998743 6699999999999999999999999999999999998 99999 6666422
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+|||||||||++|+||+.
T Consensus 74 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 74 DRNVGL-VFQNWA-LY-PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp GTTEEE-ECTTCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred HCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 134565 666543 33 2379999998876655554333445678899998886 467888999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|||||||++||+..+.++.++|.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.1e-37 Score=263.43 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=133.6
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
+++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 56899999999998733 6799999999999999999999999999999999998 99999 66664321
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--cC-----------CCCCccHHHHHHHHHhhccC--CCCCCCCC
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQ--GSVYAPSF 209 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~l~--~~~~~~~l 209 (254)
...++ +.++...+ +.+++.+++.+.... .+ .........+.++++.+++. .+.++.+|
T Consensus 78 ~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 78 ELYHYGIVR-TFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp HHHHHTEEE-CCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHhCCEEE-EccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 12454 56654322 236888888653321 12 11112234567888888875 46778899
Q ss_pred ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||||+++|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998853
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-36 Score=274.36 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=139.1
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------- 146 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~------- 146 (254)
|.+|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998633 6699999999999999999999999999999999998 99999 566632
Q ss_pred --C---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 147 --~---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
. ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+|||||||||++
T Consensus 74 ~~~~~~~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 74 IFVPPKDRDIAM-VFQSYA-LY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EECCGGGSSEEE-ECSCCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred ccCCHhHCCEEE-EeCCCc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence 1 123565 566543 33 2379999999877665554333345678889988886 577889999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+.+|++|||||||++||+..++++.++|.+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988753
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.2e-36 Score=271.49 Aligned_cols=169 Identities=14% Similarity=0.235 Sum_probs=139.5
Q ss_pred cceEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366 75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----- 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----- 147 (254)
..+|+++||++.| ++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 12 ~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCCh
Confidence 3579999999999 7643 6799999999999999999999999999999999998 99999 6666422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+||||||||+++|+||+
T Consensus 85 ~~r~ig~-v~Q~~~-l~-~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 85 QKRNVGL-VFQNYA-LF-QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp GGSSEEE-ECGGGC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhCcEEE-EecCcc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 234565 566543 22 2379999998876655554333456678899988886 57788999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+..++++.++|.+
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-36 Score=262.65 Aligned_cols=168 Identities=14% Similarity=0.138 Sum_probs=135.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 5 ~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred ceEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccccc
Confidence 3699999999998633 6699999999999999999999999999999999998 99999 66664321
Q ss_pred ---------------CCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC---CCCCCCCC
Q 025366 149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 209 (254)
Q Consensus 149 ---------------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~l 209 (254)
...|+ +.++...+ +.+++.+++.+.. ...+.........+.++++.+++. .+.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~-v~Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 154 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTM-VFQHFNLW--SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred ccccccChhhHHHHhcceEE-EecCcccC--CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence 12454 66654322 2378999988743 333333222345677889988875 46778899
Q ss_pred ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||+||+++|+||+.+|+||||||||++||+..++.+.++|.+
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 198 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 198 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998853
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9e-37 Score=274.49 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=135.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 34699999999998633 6799999999999999999999999999999999998 99999 6676432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+||||||||+++|+||+.
T Consensus 74 ~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 74 YREVGM-VFQNYAL-Y-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp GTTEEE-ECSSCCC-C-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hCcEEE-EecCccc-C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 234565 5665433 2 2379999987754333332222235678889988886 577889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|||||||++||+..++++.++|.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 15
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-36 Score=253.11 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=135.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV 151 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~ 151 (254)
.+|+++||++.|++ . +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|... ....
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 57999999999976 3 6799999999999999999999999999999999997 99999 5666321 2335
Q ss_pred EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-CCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV 230 (254)
Q Consensus 152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~ia~al~~~p~vl 230 (254)
++ +.++...+ +.+++.+++.+.....+. .. ....+.++++.+++.. +.++.+||+||+||+++|+|++.+|++|
T Consensus 81 ~~-v~q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 81 FF-LPEEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp EE-ECSSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EE-EeCCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 55 66654432 236899998876544443 22 2567788899888765 6677899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Q 025366 231 IVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 231 IlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||||++||+..++.+.+++.+
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~ 178 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILE 178 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999998853
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.7e-36 Score=260.80 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=135.0
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----- 148 (254)
+++|+++||++.|++.. +|+++||++++|+++||+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 46899999999998743 6699999999999999999999999999999999998 99999 67774321
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al 223 (254)
...+. +.++....+. +++.+++.+..... ........+.++++.+++. .+.++.+|||||+||++||+||
T Consensus 82 ~~~~~i~~-v~q~~~~~~~--~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 82 ALARTRAV-MRQYSELAFP--FSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp HHHHHEEE-ECSCCCCCSC--CBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHhheEEE-EecCCccCCC--CCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 12454 5555443232 68888876543222 2334456778899988876 4667889999999999999999
Q ss_pred cC------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 224 ~~------~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+. +|++||+||||++||+..+.++.+++.+
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~ 192 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ 192 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 98 9999999999999999999999998853
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.8e-36 Score=273.77 Aligned_cols=169 Identities=12% Similarity=0.133 Sum_probs=133.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+|+++||++.|++.. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 55799999999998733 6799999999999999999999999999999999998 99999 6776432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~ 225 (254)
....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+|||||||||++|+||+.
T Consensus 82 ~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 82 DRNISM-VFQSYAV-W-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred hCcEEE-EecCccc-C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 124565 6665433 2 2379999887643323332222345678889988876 578889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|++|||||||++||+..++++.++|.+
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999988753
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-36 Score=255.22 Aligned_cols=167 Identities=17% Similarity=0.126 Sum_probs=131.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++||++.|++. . +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 5 ~~l~~~~l~~~y~~~--~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAI--H--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCe--e--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 479999999999873 2 6699999999999999999999999999999999998 99999 66764321
Q ss_pred ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc-cC--CCCCCCCCChhhhhhHhhhhh
Q 025366 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l~--~~~~~~~lS~G~~qrv~ia~a 222 (254)
...++ +.++...+. .+++.+++.+.. ............+.++++.++ +. .+.++.+||+||+||+++|+|
T Consensus 78 ~~~~~i~~-v~q~~~l~~--~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 78 INRMGIAL-VPEGRRIFP--ELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp HHHTTEEE-ECSSCCCCT--TSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred HHhCCEEE-EecCCccCC--CCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 12565 666543322 368888886632 111222223345667777774 53 567788999999999999999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+.+|++|||||||++||+..++.+.++|.+
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 184 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998853
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.3e-36 Score=271.65 Aligned_cols=171 Identities=14% Similarity=0.165 Sum_probs=136.7
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------ 147 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------ 147 (254)
|.+|+++||++.|++ ....+|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|...
T Consensus 1 M~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 457999999999976 33114599999999999999999999999999999999998 99999 5666321
Q ss_pred -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366 148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia 220 (254)
....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++. .+.++.+||||||||+++|
T Consensus 76 ~~~~~~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 76 IVPPEDRKIGM-VFQTWAL-Y-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp SSCGGGSCEEE-EETTSCC-C-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cCChhhCCEEE-EeCCCcc-C-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 123565 6665433 2 2379999987754433433223345678889988886 5778899999999999999
Q ss_pred hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+.+|++|||||||++||+..++++.++|.+
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 185 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998753
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.3e-36 Score=261.49 Aligned_cols=170 Identities=12% Similarity=0.006 Sum_probs=131.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++|+++||++.|++.. +|+|+||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 3799999999998732 6699999999999999999999999999999999998 99999 66764322
Q ss_pred ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH----cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHh
Q 025366 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~----~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ 218 (254)
...++ +.++....+...+++.+++.+.... ++.........+.++++.+++. .+.++.+||||||||++
T Consensus 93 ~~~~~~i~~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 93 ETVRQHIGF-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHHTTEEE-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred HHHcCcEEE-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 23555 5555322222235888887653111 1111222234567888888875 46778899999999999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 206 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDS 206 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998853
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4e-35 Score=262.89 Aligned_cols=163 Identities=14% Similarity=0.169 Sum_probs=135.7
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------C
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------~ 149 (254)
||+++||++.|++ . +++++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|.... .
T Consensus 1 ml~~~~l~~~y~~--~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECC--E---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 4889999999976 3 5699999999999999999999999999999999998 99999 66764321 2
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..|. +.++.. ++ +.+++.+|+.+.....+.+.. .++.++++.+++. .+.++.+||||||||+++|+||+.+|
T Consensus 73 ~ig~-v~Q~~~-l~-~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 73 DIAF-VYQNYS-LF-PHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp TCEE-ECTTCC-CC-TTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred cEEE-EecCcc-cC-CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3565 566543 32 237999999887665554332 6778899998886 56788899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|||||||++||+..++++.++|.+
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998853
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-35 Score=255.41 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=133.8
Q ss_pred eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CC
Q 025366 77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP 149 (254)
Q Consensus 77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~ 149 (254)
+++++||++.|+ +......+|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|... ..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence 589999999997 21000126799999999999999999999999999999999997 99999 6666432 22
Q ss_pred CeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhhhhhhc
Q 025366 150 DVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 150 ~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
..|+ +.++. ..++ .+++.+++.+..... .........+.++++.+++. .+.++..|||||+||+++|+||+
T Consensus 79 ~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 79 NIGI-AFQYPEDQFF--AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GEEE-ECSSGGGGCC--CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hEEE-EeccchhhcC--CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 3565 66653 2222 268888887643222 23333456778899998886 46778899999999999999999
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|++|||||||++||+..++.+.++|.+
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~ 183 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEK 183 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998853
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.5e-35 Score=253.87 Aligned_cols=164 Identities=15% Similarity=0.104 Sum_probs=131.0
Q ss_pred ceEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (254)
++|+++||++.|+ +. . +|+++||++++|++++|+||||||||||+|+|+|+++ |++|++.. ....++
T Consensus 3 ~~l~i~~l~~~y~~~~--~--vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~~- 70 (253)
T 2nq2_C 3 KALSVENLGFYYQAEN--F--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIGF- 70 (253)
T ss_dssp EEEEEEEEEEEETTTT--E--EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEEE-
T ss_pred ceEEEeeEEEEeCCCC--e--EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEEE-
Confidence 4799999999998 53 3 5699999999999999999999999999999999997 99998431 234565
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHc-CC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK 228 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~ 228 (254)
+.++...++ .+++.+++.+..... +. ........+.++++.+++. .+.++.+|||||+||+++|+||+.+|+
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 666543332 268888887643211 21 1222345677888888876 467788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 229 VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 229 vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|||||||++||+..++.+.+++.+
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999998853
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.2e-35 Score=252.77 Aligned_cols=169 Identities=18% Similarity=0.071 Sum_probs=125.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCce-ecCCCCCC---
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKP--- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~-~~~~~~~~--- 148 (254)
|++++++||++.|++. . +|+++||++++|++++|+||||||||||+|+|+|+ ++ |++|+ .++|....
T Consensus 1 M~~l~~~~l~~~y~~~--~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGE--T--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCE--E--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 4579999999999863 3 66999999999999999999999999999999998 55 89999 66664321
Q ss_pred ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCC--CccHHHHHHHHHhhccC---CCCCCCC-CChhhhh
Q 025366 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGD 215 (254)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~--~~~~~~~~~~l~~l~l~---~~~~~~~-lS~G~~q 215 (254)
...+. +.++...+ +.+++.+++.+.... .+... ......+.++++.+++. .+.++.+ |||||||
T Consensus 74 ~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ 150 (250)
T 2d2e_A 74 PDERARKGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK 150 (250)
T ss_dssp HHHHHHTTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH
T ss_pred HHHHHhCcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence 11232 44544322 236888888764422 22211 11234567888888873 4667788 9999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 188 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998853
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3e-35 Score=251.47 Aligned_cols=162 Identities=11% Similarity=0.058 Sum_probs=127.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP 149 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~ 149 (254)
|++++||++.|++ +++++||++++ ++++|+||||||||||+|+|+|+++ |++|+ .++|... ..
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 3789999999975 36999999999 9999999999999999999999997 99999 5666321 12
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
..|+ +.++...+ +.+++.+++.+.....+. ......+.++++.+++. .+.++.+|||||+||+++|+|++.+|
T Consensus 71 ~i~~-v~q~~~l~--~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 71 GIGF-VPQDYALF--PHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp CCBC-CCSSCCCC--TTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEE-EcCCCccC--CCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3454 55554322 236888887653211111 11235567888888876 46678899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|||||||++||+..++.+.+++.+
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999998853
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.1e-34 Score=249.95 Aligned_cols=169 Identities=16% Similarity=0.084 Sum_probs=128.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC---
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP--- 148 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~--- 148 (254)
+++|+++||++.|++. . +|+++||++++|++++|+||||||||||+|+|+|++ + |++|+ .++|....
T Consensus 18 ~~~l~~~~l~~~y~~~--~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDK--A--ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCE--E--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 4579999999999763 2 669999999999999999999999999999999984 4 88999 66664221
Q ss_pred ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH----cCCCC---CccHHHHHHHHHhhccC---CCCCCC-CCCh
Q 025366 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH 211 (254)
Q Consensus 149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~----~g~~~---~~~~~~~~~~l~~l~l~---~~~~~~-~lS~ 211 (254)
...++ +.++...+. .+++.+++.+.... .+... ......+.++++.+++. .+.++. .|||
T Consensus 91 ~~~~~~~~i~~-v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 91 PEDRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp HHHHHHHTEEE-ECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred HHHHhhCCEEE-EccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 12344 556543322 36777877654311 22211 11134567888888884 245665 5999
Q ss_pred hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||+++|+||+.+|+||||||||++||+..++.+.++|.+
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~ 209 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999864
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-33 Score=243.95 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=130.5
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD 150 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~ 150 (254)
|++++||++.|++......+|+++||+++ |++++|+||||||||||+|+|+|++ |++|+ .++|... ...
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhh
Confidence 48899999999751000116799999999 9999999999999999999999997 89999 5666321 223
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH 227 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p 227 (254)
.+.++.++... .+++.+++.+..... ......+.++++.+++. .+.++.+||+|||||+++|+||+.+|
T Consensus 76 i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 76 YSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp EEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 45125555433 378999987754332 23356678889988886 46778899999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 228 KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|||||||++||+..++.+.+++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKE 173 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred CEEEEECCccccCHHHHHHHHHHHHH
Confidence 99999999999999999999998864
No 28
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=241.18 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=119.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
|.+++++||++.|++..+. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++| ..++
T Consensus 1 M~~l~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~~ 70 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVAY 70 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEEE
T ss_pred CCeEEEEEEEEEeCCCCCc--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEEE
Confidence 4479999999999731122 6799999999999999999999999999999999998 99999 5665 2555
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHH---HHhhccC-------CCCCCCCCChhhhhhHhhhhhh
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV 223 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---l~~l~l~-------~~~~~~~lS~G~~qrv~ia~al 223 (254)
+.++.. ++ .+++.+++.+.. ... ........+. .+.++.. ...++..|||||+||+++|+||
T Consensus 71 -v~Q~~~-~~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 71 -VPQQAW-IQ--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp -ECSSCC-CC--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred -EcCCCc-CC--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 666653 22 267888775421 111 1111222221 2222221 2456789999999999999999
Q ss_pred cCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
+.+|++|||||||++||+..++.+.+++
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 9999999999999999999999999988
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.6e-33 Score=240.43 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=123.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
-++++||++.|++.... +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 7 ~~~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred ceeEEEEEEEeCCCCcc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 48899999999311122 5699999999999999999999999999999999998 99999 67764321
Q ss_pred -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhh
Q 025366 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG 214 (254)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~ 214 (254)
...++ +.++... +. .++.+++.+. .. ......+.++++.+++. ....+..|||||+
T Consensus 82 ~~~i~~-v~Q~~~l-~~--~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 82 RRQVGV-VLQDNVL-LN--RSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp HHHEEE-ECSSCCC-TT--SBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred HhcEEE-EeCCCcc-cc--ccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 12454 6665543 22 4777776542 11 12234455555555442 2235679999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus 152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 190 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK 190 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998853
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2e-33 Score=240.57 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=124.0
Q ss_pred eEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
+++++||++.| ++.. +|+++||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48899999999 4422 6799999999999999999999999999999999998 99999 5666321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC-------------CCCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-------------~~~~~lS~G~ 213 (254)
....++ +.++... +. .++.+++.+ +.........+.++++.+++... ..+..|||||
T Consensus 74 ~~~~i~~-v~q~~~l-~~--~tv~enl~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 74 WRSQIGF-VSQDSAI-MA--GTIRENLTY-----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CTTTCCE-ECCSSCC-CC--EEHHHHTTS-----CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHhhEEE-EcCCCcc-cc--ccHHHHHhh-----hccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 223555 5665433 22 366666543 21112234556777777766421 2356999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|+|++.+|++|||||||++||+..++.+.+++.+
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988753
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.8e-34 Score=247.66 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=124.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
.+|+++||++.|++... ..+|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++|....
T Consensus 15 ~~l~~~~l~~~y~~~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPN-VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CCEEEEEEEECCTTCTT-SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred ceEEEEEEEEEeCCCCC-ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence 46999999999975100 116799999999999999999999999999999999997 99999 66764221
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH------HHHHHHHHhh--ccC--CCCCCCCCChhhhhh
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP------LLLLNCLKNL--RNQ--GSVYAPSFDHGVGDP 216 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~------~~~~~~l~~l--~l~--~~~~~~~lS~G~~qr 216 (254)
...++ +.++... +. .++.+++.+... ........ ..+.++++.+ ++. .+.++..|||||+||
T Consensus 91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 91 LHTQVAA-VGQEPLL-FG--RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp HHHHEEE-ECSSCCC-CS--SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred HhccEEE-EecCCcc-cc--ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 12454 6666543 22 478887754211 11110000 1123445554 332 456778999999999
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++|+||+.+|+||||||||++||+..++.+.++|.+
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998854
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.8e-32 Score=231.50 Aligned_cols=155 Identities=12% Similarity=0.129 Sum_probs=117.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
.+++++||++.|++..+. +|+++||++++|++++|+||||||||||+|+|+|+++ |++|+ .++| ..++
T Consensus 5 ~~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~- 73 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF- 73 (229)
T ss_dssp EEEEEEEEEECSSTTSCC--SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE-
T ss_pred ceEEEEEEEEEeCCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE-
Confidence 479999999999631122 6799999999999999999999999999999999997 99999 5665 3554
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhhhHhhhh
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~ia~ 221 (254)
+.++... +. .++.+++.+ +... ......+.++.+++. ....+..||+|||||+++|+
T Consensus 74 v~q~~~~-~~--~tv~enl~~-----~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 74 CSQFSWI-MP--GTIKENIIF-----GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp ECSSCCC-CS--BCHHHHHHT-----TSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred EecCCcc-cC--CCHHHHhhc-----cCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 6665543 22 377777654 2111 112222233322221 12245799999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
|++.+|++|||||||++||+..++.+.+++
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.98 E-value=2.1e-32 Score=235.02 Aligned_cols=158 Identities=19% Similarity=0.130 Sum_probs=126.5
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
++++++||++. . +|+++||++++|++++|+||||||||||+|+|+|+++ |+ |+ .++|....
T Consensus 3 ~~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 3 IVMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHH
T ss_pred cEEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHH
Confidence 36999999987 2 6799999999999999999999999999999999997 99 99 66664221
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
...++ +.++...+. .+++.+++.+.. ... .....+.++++.+++. .+.++..|||||+||+++|+||+
T Consensus 71 ~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~----~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 71 LALHRAY-LSQQQTPPF--ATPVWHYLTLHQ----HDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp HHHHEEE-ECSCCCCCT--TCBHHHHHHTTC----SST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HhceEEE-ECCCCccCC--CCcHHHHHHHhh----ccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 12454 666544322 368888775421 111 1256678888888876 46778899999999999999999
Q ss_pred CCCc-------EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 225 LQHK-------VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~-------vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+|+ +|||||||++||+..++.+.+++.+
T Consensus 143 ~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 143 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999 9999999999999999999998853
No 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=1.8e-32 Score=241.73 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=124.9
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
..|+++||++.|++. .. +|+|+||+|++|++++|+||||||||||+++|+|++. |++|+ .++|....
T Consensus 52 ~~i~~~~vs~~y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CCEEEEEEEEESSTT-CE--EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred CeEEEEEEEEEcCCC-Cc--eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 359999999999642 22 5699999999999999999999999999999999998 99999 67774321
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhh
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~ 213 (254)
...++ +.++...+ . .++.+|+.+ +... .....+.++++.+++. .......|||||
T Consensus 126 ~r~~i~~-v~Q~~~lf-~--~Tv~eNi~~-----~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq 195 (306)
T 3nh6_A 126 LRSHIGV-VPQDTVLF-N--DTIADNIRY-----GRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195 (306)
T ss_dssp HHHTEEE-ECSSCCCC-S--EEHHHHHHT-----TSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred HhcceEE-EecCCccC-c--ccHHHHHHh-----hccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence 23565 77776443 2 478887754 2211 2234444555444332 123456899999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||++|||||+.+|+||||||||++||+.....|.++|.+
T Consensus 196 rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988853
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=2.4e-32 Score=236.14 Aligned_cols=163 Identities=13% Similarity=0.038 Sum_probs=123.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
.+|+++||++.|++.. ...+|+++||++++|++++|+||||||||||+|+|+|+++ | +|+ .++|...
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 4699999999997631 1126799999999999999999999999999999999995 5 899 5666321
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~ 213 (254)
....++ +.++...+ . .++.+++.+. ... .....+.++++.+++. ...++..|||||
T Consensus 91 ~~~~i~~-v~Q~~~l~-~--~tv~enl~~~-----~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq 160 (260)
T 2ghi_A 91 IRSIIGI-VPQDTILF-N--ETIKYNILYG-----KLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE 160 (260)
T ss_dssp HHTTEEE-ECSSCCCC-S--EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred HhccEEE-EcCCCccc-c--cCHHHHHhcc-----CCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence 134565 66665432 2 4777777542 111 1233445555544431 124567999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||+++|+|++.+|+||||||||++||+..++.+.++|.+
T Consensus 161 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 200 (260)
T 2ghi_A 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200 (260)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998853
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.8e-32 Score=247.69 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=126.3
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
..|+++||+|.|+..... +|+++||+|++||+++|+||||||||||+|+|+|++ +++|+ .++|....
T Consensus 18 ~~i~~~~l~~~y~~~~~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNA--ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CCEEEEEEEEESSSSSCC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHHH
T ss_pred CeEEEEEEEEEecCCCeE--EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChHH
Confidence 469999999999431122 679999999999999999999999999999999998 67899 67774321
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCC-----------CChhh
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS-----------FDHGV 213 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------lS~G~ 213 (254)
...+. +.++... +. .++.+|+. .........+.++++.+++. .+.++.. |||||
T Consensus 92 ~rr~ig~-v~Q~~~l-f~--~tv~enl~-------~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq 160 (390)
T 3gd7_A 92 WRKAFGV-IPQKVFI-FS--GTFRKNLD-------PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH 160 (390)
T ss_dssp HHHTEEE-ESCCCCC-CS--EEHHHHHC-------TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred HhCCEEE-EcCCccc-Cc--cCHHHHhh-------hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence 23454 6665433 32 46666553 12223456677888888775 3555555 99999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||++|||||+.+|+||||||||++||+..+.+++++|.+
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=6e-30 Score=224.23 Aligned_cols=150 Identities=11% Similarity=0.139 Sum_probs=102.6
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++||++.+. . +++++||+|++|++++|+||||||||||+|+|+|+++ |++|+ .++| ..++
T Consensus 39 ~~l~~~~l~~~~~--~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~- 103 (290)
T 2bbs_A 39 DSLSFSNFSLLGT--P----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF- 103 (290)
T ss_dssp -----------CC--C----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEE-
T ss_pred ceEEEEEEEEcCc--e----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEE-
Confidence 4699999998642 2 6799999999999999999999999999999999997 99999 5555 3554
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhhhHhhhh
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~ia~ 221 (254)
+.++... +. .++.+++. +... ........++.+++. ....+..|||||+||+++|+
T Consensus 104 v~Q~~~l-~~--~tv~enl~------~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr 172 (290)
T 2bbs_A 104 CSQNSWI-MP--GTIKENII------GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 172 (290)
T ss_dssp ECSSCCC-CS--SBHHHHHH------TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred EeCCCcc-Cc--ccHHHHhh------Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence 6665433 22 37777664 1111 111222233322221 11235799999999999999
Q ss_pred hhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
|++.+|++|||||||++||+..+..+.+++
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred HHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=9.4e-30 Score=242.64 Aligned_cols=164 Identities=16% Similarity=0.142 Sum_probs=127.7
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++..+. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKP--ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN 414 (582)
T ss_pred CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence 469999999999752122 6799999999999999999999999999999999998 99999 6777422
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-------------CCCCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~lS~G~ 213 (254)
+...+. +.++...+. .++.+|+.+... + ..+.+++.++++.+++.. ......|||||
T Consensus 415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 415 LRRHFAL-VSQNVHLFN---DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred HhcCeEE-EcCCCcccc---ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 234554 677664332 478887754210 1 233455666676665431 12346899999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||++.+|++|||||||++||+...+.+.+.+++
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=1.7e-29 Score=240.92 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=128.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------ 148 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------ 148 (254)
..++++||++.|++..+. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS 414 (582)
T ss_dssp CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred CcEEEEEEEEEcCCCCCc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence 359999999999742112 6799999999999999999999999999999999998 99999 67774321
Q ss_pred --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhh
Q 025366 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV 213 (254)
Q Consensus 149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~ 213 (254)
...+. +.++...+. .++.+|+.+.. .+ ..+.+++.++++.+++. .......|||||
T Consensus 415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~~----~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 415 LRNQVAL-VSQNVHLFN---DTVANNIAYAR----TE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHTEEE-ECSSCCCCS---SBHHHHHHTTT----TS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHhhCeE-EccCCcCCC---CCHHHHHhccC----CC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 23565 777765432 47888775421 01 23345666677665542 123457899999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||++.+|++|||||||++||+...+.+.+.+++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998854
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.96 E-value=2.3e-29 Score=240.50 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=127.4
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------- 148 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------- 148 (254)
++++||++.|++... ..+|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|....
T Consensus 342 i~~~~v~~~y~~~~~-~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCTT-SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 899999999975311 125699999999999999999999999999999999998 99999 67774321
Q ss_pred CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhhh
Q 025366 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGD 215 (254)
Q Consensus 149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~q 215 (254)
...+. +.++...+ . .++.+|+.+... .....+.+++.++++.+++. .+. ....|||||||
T Consensus 418 ~~i~~-v~Q~~~l~-~--~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~q 490 (595)
T 2yl4_A 418 SKIGT-VSQEPILF-S--CSIAENIAYGAD---DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 490 (595)
T ss_dssp HSEEE-ECSSCCCC-S--SBHHHHHHTTSS---STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHH
T ss_pred hceEE-EccCCccc-C--CCHHHHHhhcCC---CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 23554 77776543 2 478887754211 00123456667777766542 122 34789999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+++|||++.+|++|||||||++||+...+.+.+.+.+
T Consensus 491 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 491 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=1.9e-29 Score=240.31 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=124.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++.... +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 338 ~~i~~~~v~~~y~~~~~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~ 412 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGS 412 (578)
T ss_dssp CCEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHH
T ss_pred CeEEEEEEEEEcCCCCCc--ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 359999999999763222 6699999999999999999999999999999999998 99999 6777432
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------C----CCCCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~ 213 (254)
+...+. +.++...+. .++.||+.+ +.+. ...+.+.+.++..++. . ......|||||
T Consensus 413 ~r~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 413 LRNQIGL-VQQDNILFS---DTVKENILL-----GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp HHHTEEE-ECSSCCCCS---SBHHHHHGG-----GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred HhhheEE-EeCCCccCc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 124565 777765432 377777643 2222 2334555555544332 1 12345899999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
|||+++|||++.+|++|||||||++||+...+.+.+.++
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~ 521 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 521 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998875
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=3.3e-29 Score=239.01 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=124.5
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++..+. +|+|+||++++||+++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 340 ~~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~ 414 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKD 414 (587)
T ss_dssp CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHH
T ss_pred CcEEEEEEEEEcCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHH
Confidence 359999999999653223 6699999999999999999999999999999999998 99999 6777532
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGV 213 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~ 213 (254)
+...+. ++++...+. .++.||+.+ +.+. ...+...+.++..++ + .......|||||
T Consensus 415 ~r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 415 LRGHISA-VPQETVLFS---GTIKENLKW-----GRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp HHHHEEE-ECSSCCCCS---EEHHHHHTT-----TCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred HHhheEE-ECCCCcCcC---ccHHHHHhc-----cCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 123454 777765432 367776643 2221 233444444443322 1 234567999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||+++|||++.+|++|||||||++||+...+++.+.+++
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.5e-28 Score=231.88 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=123.9
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
.++++++++++.|++. .+..+||++++||++||+||||||||||+|+|+|+++ |++|+ .+.+ ...+.
T Consensus 267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~----~~i~~ 334 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK----QILSY 334 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC----CCEEE
T ss_pred cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC----eeeEe
Confidence 3579999999999872 3577899999999999999999999999999999998 99999 4443 23444
Q ss_pred EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (254)
Q Consensus 154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlI 231 (254)
+.++-... ...++.+++.... .... ........++++.+++. .+.++.+|||||+|||+||+||+.+|+|||
T Consensus 335 -~~q~~~~~--~~~tv~~~l~~~~--~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 335 -KPQRIFPN--YDGTVQQYLENAS--KDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp -ECSSCCCC--CSSBHHHHHHHHC--SSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred -echhcccc--cCCCHHHHHHHhh--hhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 45443221 1257777665421 1111 11223456677777665 567888999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHhhc
Q 025366 232 VDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 232 lDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||||++||+..+.++.++|.+
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~ 430 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKR 430 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2.5e-29 Score=240.39 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=122.6
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.++++||++.|++. +. +|+|+||++++|++++|+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 354 ~i~~~~v~~~y~~~-~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK-KP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSS-SC--SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCC-Cc--cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence 59999999999752 22 6799999999999999999999999999999999998 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~ 214 (254)
+...+. +.++...+. .++.+|+.+ +.+. .+.+.+.++++..++. .+. ....||||||
T Consensus 428 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 428 RSSIGI-VLQDTILFS---TTVKENLKY-----GNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHEEE-ECTTCCCCS---SBHHHHHHS-----SSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HhceEE-EeCCCcccc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 123554 777765432 478887753 2221 1223344444433332 111 1258999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++|||++.+|++|||||||++||+...+.+.+.+.+
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 536 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK 536 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988753
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=3.1e-28 Score=232.61 Aligned_cols=158 Identities=16% Similarity=0.097 Sum_probs=125.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
++++++++++.|++. .+++++|++++||++||+||||||||||+|+|+|+++ |++|++.. ....++ +
T Consensus 356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~----~~~i~~-v 422 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEW----DLTVAY-K 422 (607)
T ss_dssp EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCC----CCCEEE-E
T ss_pred eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE----eeEEEE-E
Confidence 579999999999762 4689999999999999999999999999999999997 99998422 224565 6
Q ss_pred eCCCCCCCCcCCChhhcHHHH-HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366 156 PMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl 232 (254)
.++.... ..+++.++.... ...+ .....+.++++.+++. .+.++.+|||||+|||+||++|+.+|+||||
T Consensus 423 ~Q~~~~~--~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlL 495 (607)
T 3bk7_A 423 PQYIKAE--YEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL 495 (607)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred ecCccCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 6654322 235776655432 1111 1234567788888875 4567889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHhhc
Q 025366 233 DGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 233 DEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||++||+.++..+.++|.+
T Consensus 496 DEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 496 DEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHH
Confidence 999999999999999998853
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=4.1e-28 Score=229.14 Aligned_cols=159 Identities=16% Similarity=0.083 Sum_probs=124.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
++++++++++.|++. .+++++|++++||++||+||||||||||+|+|+|+++ |++|++.. ....++ +
T Consensus 286 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~~-v 352 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVAY-K 352 (538)
T ss_dssp EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEEE-E
T ss_pred eEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEEE-E
Confidence 579999999999762 4689999999999999999999999999999999997 99998432 224565 6
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD 233 (254)
.++.... ..+++.++....... ... ....+.++++.+++. .+.++..||||||||+++|++|+.+|+|||||
T Consensus 353 ~Q~~~~~--~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 353 PQYIKAD--YEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp CSSCCCC--CSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ecCCcCC--CCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6654332 235776655432111 111 234556777777764 46778899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhc
Q 025366 234 GNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 234 Ep~~~lD~~~~~~l~~ll~~ 253 (254)
|||++||+.++..+.++|.+
T Consensus 427 EPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 99999999999999998753
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=5.8e-28 Score=230.77 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=116.0
Q ss_pred ceEEE--------ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------
Q 025366 76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------ 141 (254)
Q Consensus 76 ~~l~i--------~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------ 141 (254)
.+|++ +||++.|++. . .+++++| ++++|+++||+||||||||||+|+|+|+++ |++|+.
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~ 154 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVN--A-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN 154 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred ceEEEecCCccccCCeEEEECCC--C-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence 35777 8999999763 1 2569999 999999999999999999999999999997 999982
Q ss_pred ----cCCCCC----------CCCeEEEeeCCCCCCCC-cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCC
Q 025366 142 ----FDSQVK----------PPDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSV 204 (254)
Q Consensus 142 ----~~~~~~----------~~~~g~~i~~~~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~ 204 (254)
+.|... ....+. +.+.-..... ...++.+++.. .. ....+.++++.+++. .+.
T Consensus 155 ~~~~~~G~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~----~~-----~~~~~~~~L~~lgL~~~~~~ 224 (607)
T 3bk7_A 155 VIRAFRGNELQNYFERLKNGEIRPVV-KPQYVDLLPKAVKGKVRELLKK----VD-----EVGKFEEVVKELELENVLDR 224 (607)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEE-ECSCGGGGGGTCCSBHHHHHHH----TC-----CSSCHHHHHHHTTCTTGGGS
T ss_pred hhheeCCEehhhhhhhhhhhhcceEE-eechhhhchhhccccHHHHhhh----hH-----HHHHHHHHHHHcCCCchhCC
Confidence 233211 011222 2111100000 00133333321 11 123456788888876 467
Q ss_pred CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++.+|||||+||++||+||+.+|+||||||||++||+..+..+.++|.+
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 273 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999988853
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=1.9e-27 Score=224.64 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=111.9
Q ss_pred EEE-ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee----------cCCCC
Q 025366 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV 146 (254)
Q Consensus 78 l~i-~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~----------~~~~~ 146 (254)
.++ +||++.|++. . .+++++| ++++||++||+||||||||||+|+|+|+++ |++|+. +.|..
T Consensus 21 ~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--A-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCc--c-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 344 5899999863 1 2569999 999999999999999999999999999997 999982 23321
Q ss_pred C----------CCCeEEEeeCCCCCCCC-cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366 147 K----------PPDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV 213 (254)
Q Consensus 147 ~----------~~~~g~~i~~~~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~ 213 (254)
. ....+. +.+.-..... ...++.+++.. .. ....+.++++.+++. .+.++.+|||||
T Consensus 94 ~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVV-KPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHHHHHTTSCCCEE-ECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred HHHHHHHHHHHhhhhhh-hhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence 1 011222 2221110000 00123232211 11 113356788888875 466788999999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+|||+||+||+.+|+||||||||++||+..++.+.++|.+
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~ 203 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988853
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=3.3e-27 Score=242.59 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=132.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||+++|++... ..+|+|+||+|++|+.+||+|+||||||||+++|.|++. |++|+ .+||...
T Consensus 1076 ~I~f~nVsf~Y~~~~~-~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPE-IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSCS-SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCCC-CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 5999999999976422 236699999999999999999999999999999999998 99999 7788432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC---------CCCCC----CCCChhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGV 213 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~ 213 (254)
+...+. |+|+.+.+. -|+.+|+. +|. +.+...+++.++++..++. .+..+ ..|||||
T Consensus 1152 R~~i~~-V~Qdp~LF~---gTIreNI~-----~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A 1152 RSQIAI-VSQEPTLFD---CSIAENII-----YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp HTTEEE-ECSSCCCCS---EEHHHHHS-----SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred HhheEE-ECCCCEeeC---ccHHHHHh-----ccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence 344564 888887654 36777663 443 3455667777777766542 23333 4799999
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|||++||||++.+|+||||||||+.||+.+-+.|.+.|++
T Consensus 1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998865
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-26 Score=218.72 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=116.1
Q ss_pred ecceeecccccceeccccceeeeeCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 81 ~~l~~~y~~~~~~vlal~~vsl~i~~G-----eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
.++.+.|++.. . ++++++|++.+| |++||+||||||||||+|+|+|+++ |++|+.+. ....+. +
T Consensus 350 ~~~~~~y~~~~-~--~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~~-~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK-K--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVSM-K 418 (608)
T ss_dssp SSSCCEECCEE-E--ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEEE-E
T ss_pred cceeEEecCcc-c--ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEEE-e
Confidence 56788887532 2 569999999998 7899999999999999999999998 99997321 223443 4
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD 233 (254)
.++....+ ..++.++... ...+. ........++++.+++. .+.++.+|||||+|||+||++|+.+|+|||||
T Consensus 419 ~q~~~~~~--~~tv~e~~~~--~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLFFK--KIRGQ--FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHHHH--HCSST--TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHHHH--Hhhcc--cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 54422221 1355554321 11111 12334556778888776 56788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhc
Q 025366 234 GNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 234 Ep~~~lD~~~~~~l~~ll~~ 253 (254)
|||++||+.++.++.++|.+
T Consensus 493 EPT~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999888753
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=3.1e-26 Score=234.88 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=126.0
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------- 147 (254)
..++++||++.|++.. ...+|+|+||++++||++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 1029 g~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~ 1104 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQW 1104 (1284)
T ss_dssp CCEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHH
T ss_pred CcEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHH
Confidence 3599999999997632 1236799999999999999999999999999999999998 99999 6777532
Q ss_pred -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC---------CCC----CCCCCChh
Q 025366 148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHG 212 (254)
Q Consensus 148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G 212 (254)
+...+. ++++...+. .++.+|+.+ +.+ .....+.+.+.++..++. .+. ....||||
T Consensus 1105 ~r~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgG 1175 (1284)
T 3g5u_A 1105 LRAQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175 (1284)
T ss_dssp HTTSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHH
T ss_pred HHhceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHH
Confidence 234565 788875432 477776532 222 123344455555544321 111 24589999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||||+++||||+.+|+||||||||++||+.+.+.+.+.+++
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998863
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=2.3e-26 Score=235.82 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=123.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------- 147 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------- 147 (254)
.|+++||++.|++.. ...+|+|+||++++|+++||+||||||||||+++|+|+++ |++|+ .++|...
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 589999999997632 1236799999999999999999999999999999999998 99999 6777432
Q ss_pred CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHh---------hccCCC----CCCCCCChhhh
Q 025366 148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGS----VYAPSFDHGVG 214 (254)
Q Consensus 148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~l~~~----~~~~~lS~G~~ 214 (254)
+...+. +.++...+. .++.+|+.+.. + ....+.+.+.++. +..+.+ .....||||||
T Consensus 463 r~~i~~-v~Q~~~l~~---~ti~eNi~~g~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 463 REIIGV-VSQEPVLFA---TTIAENIRYGR-----E-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHEEE-ECSSCCCCS---SCHHHHHHHHC-----S-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HhheEE-EcCCCccCC---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 123554 788765443 48888886532 1 1223334443333 222222 34568999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||++||||++.+|+||||||||++||+...+.+.+.++
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~ 570 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD 570 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888775
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=3.4e-26 Score=226.62 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=121.2
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT 153 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~ 153 (254)
.++|+++||++.|++..+. +|+|+||++++|++++|+||||||||||+|+|+|+++ |++|+ .+.++. ..++
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~--iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I~y 740 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RIAY 740 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC--SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CEEE
T ss_pred CceEEEEeeEEEeCCCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ceEe
Confidence 3579999999999752122 5699999999999999999999999999999999997 99999 444321 1222
Q ss_pred EeeCCCC-----------------------C-------------------------------------------------
Q 025366 154 VLPMDGF-----------------------H------------------------------------------------- 161 (254)
Q Consensus 154 ~i~~~~~-----------------------~------------------------------------------------- 161 (254)
+.+..+ .
T Consensus 741 -v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 741 -IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp -ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred -eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 111100 0
Q ss_pred ---------C---CCcCCChhhcH--------HHH-----------HHHcCCCCCccHHHHHHHHHhhccCC----CCCC
Q 025366 162 ---------L---YLSQLDAMEDP--------KEA-----------HARRGAPWTFNPLLLLNCLKNLRNQG----SVYA 206 (254)
Q Consensus 162 ---------~---~~~~l~~~e~~--------~~~-----------~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~ 206 (254)
+ ....++..++. ... ....+.........+.++++.+++.. +.++
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~ 899 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence 0 00001111110 000 00123222334566788899998852 5678
Q ss_pred CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 207 ~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..||||||||++||++|+.+|+||||||||++||+.+...+.++|.+
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~ 946 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=1.2e-25 Score=222.85 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=114.8
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (254)
.+...|+++.|++.. +|+++||++++|++++|+||||||||||+|+|+|-. . .|..... ....++ +.
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~~---~~~~~~-v~ 501 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQE---ECRTVY-VE 501 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCTT---TSCEEE-TT
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCcccc---ceeEEE-Ec
Confidence 566669999998733 669999999999999999999999999999999621 0 1110000 111222 33
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD 233 (254)
++... ....+++.+++.. ...+ . ...+.++++.+++. .+.++.+||||||||++||++|+.+|+|||||
T Consensus 502 q~~~~-~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 502 HDIDG-THSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp CCCCC-CCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccc-cccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 32111 1123566666543 1111 1 56678899999884 46778899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhc
Q 025366 234 GNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 234 Ep~~~lD~~~~~~l~~ll~~ 253 (254)
|||++||+..++.+.++|.+
T Consensus 574 EPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHh
Confidence 99999999999999998853
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-26 Score=218.12 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=107.6
Q ss_pred cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceec------------CCCCC--
Q 025366 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQVK-- 147 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~------------~~~~~-- 147 (254)
+++++|+... . .+++++ .+++|+++||+||||||||||+|+|+|+++ |++|++. .|...
T Consensus 82 ~~~~~Y~~~~--~-~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS--F-KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS--C-EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc--e-eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 5788887632 1 345555 689999999999999999999999999997 9999741 11100
Q ss_pred ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366 148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED 219 (254)
Q Consensus 148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i 219 (254)
......++. .. +.............................+.++++.+++. .+.++.+|||||+||++|
T Consensus 155 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 155 YFTKMLEDDIKAIIK-PQ-YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHHHHHHTSCCCEEE-CC-CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhc-hh-hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 000000000 00 00000000000000000011111122346678888888876 567889999999999999
Q ss_pred hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|+||+.+|++|||||||++||+..+..+.+++.+
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~ 266 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHG
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998864
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=8.5e-26 Score=232.15 Aligned_cols=162 Identities=16% Similarity=0.134 Sum_probs=127.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------- 148 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------- 148 (254)
-|+++||++.|++.. ...+|+|+||++++|+.++|+||+|||||||+++|.|++. |++|+ .++|....
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 489999999997642 2236799999999999999999999999999999999998 99999 67774321
Q ss_pred -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhhh
Q 025366 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG 214 (254)
Q Consensus 149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~ 214 (254)
...++ +.|+.+.+. -|+.+|+.+ |.+. .+.+++.++++...+ +.+. .-..||||||
T Consensus 491 r~~i~~-v~Q~~~Lf~---~TI~eNI~~-----g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 491 RKNVAV-VSQEPALFN---CTIEENISL-----GKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHEEE-ECSSCCCCS---EEHHHHHHT-----TCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred hhcccc-cCCcceeeC---CchhHHHhh-----hccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 23554 788876554 478887754 3332 345666666665443 2232 2357999999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
||++||||+..+|+|+||||||++||+.+...+.+.|+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~ 598 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD 598 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877765
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=1.4e-24 Score=204.76 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=104.1
Q ss_pred ecceeecccccceeccccceeeee-CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------------cCCCCC
Q 025366 81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK 147 (254)
Q Consensus 81 ~~l~~~y~~~~~~vlal~~vsl~i-~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------------~~~~~~ 147 (254)
++++.+|+... ++-..+.+ ++|+++||+||||||||||+|+|+|+++ |++|++ +.|...
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 35788998743 23334444 4799999999999999999999999997 999974 223211
Q ss_pred --------CCCeE--EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhh
Q 025366 148 --------PPDVA--TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD 215 (254)
Q Consensus 148 --------~~~~g--~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~q 215 (254)
....+ ..+............++.+.. . ... ......++++.+++. .+.++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l---~-~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEIL---T-KID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHH---H-HHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHh---h-cch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 01111 111111110000001111111 1 111 112345677777765 56788899999999
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
|++||+||+.+|+||||||||++||+..+..+.++|.+
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~ 183 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=8.9e-25 Score=211.40 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=89.8
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHH---------------------HHHHHhhcccCCCCcee--------cCCCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASS--------FDSQV 146 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLl---------------------k~L~Gll~~~~p~~G~~--------~~~~~ 146 (254)
+|+||||+|++|+++||+||||||||||+ +++.|+.. |+.|.+ +++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 77999999999999999999999999998 88888876 775541 12211
Q ss_pred C----CCCeEEEeeCCCCCC-----------------CCcCCChhhcHHHHHHHc--CCCCCc------cHHHHHHHHHh
Q 025366 147 K----PPDVATVLPMDGFHL-----------------YLSQLDAMEDPKEAHARR--GAPWTF------NPLLLLNCLKN 197 (254)
Q Consensus 147 ~----~~~~g~~i~~~~~~~-----------------~~~~l~~~e~~~~~~~~~--g~~~~~------~~~~~~~~l~~ 197 (254)
. ....|. +.+....+ ....+++.+++.+..... ...... .......+++.
T Consensus 110 ~~~~~~~~ig~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGT-VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHH-HTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhccchhceee-eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 011111 11100000 001235555554321100 000000 01112345777
Q ss_pred hccC---CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 198 LRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 198 l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+++. .+.++.+|||||+||++||+||+.+|+ ||||||||++||+..++.+.++|.+
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~ 249 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 249 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 7765 467888999999999999999999988 9999999999999999999998853
No 59
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=1.1e-25 Score=199.18 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=109.4
Q ss_pred eEEEecceeecccccceeccccceeee-----------------------eCCCeEEEEECCCCCcHHHHHHHHHHhhcc
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~-----------------------i~~GeivgLiGpNGsGKSTLlk~L~Gll~~ 133 (254)
.|++++|++.|+. +++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 5889999999964 33555543 78999999999999999999999999997
Q ss_pred cCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-CCCCCCCChh
Q 025366 134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG 212 (254)
Q Consensus 134 ~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G 212 (254)
|+.| ....+. +.+++++... ++.++..+. ..++.+..++...+.++++.++.+. +.+++.||+|
T Consensus 116 --~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G 180 (312)
T 3aez_A 116 --RWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL 180 (312)
T ss_dssp --TSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred --ccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence 6555 234554 7888875432 444443221 1135555667778888888888443 3678899999
Q ss_pred hhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 213 VGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD 240 (254)
|+||+++|++++.+|+|||+|||++++|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCC
Confidence 9999999999999999999999999987
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.88 E-value=2e-22 Score=194.95 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=54.0
Q ss_pred HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...+.++.+++. .+.++.+|||||+|||+||+||+.+| +|||+||||++||+..+.++.++|.+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~ 591 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 445666667664 35677899999999999999998776 59999999999999999999998863
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.5e-25 Score=206.25 Aligned_cols=159 Identities=13% Similarity=0.024 Sum_probs=106.8
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-e-e-cCCCCCCCCe
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDV 151 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G-~-~-~~~~~~~~~~ 151 (254)
.++++++||++.|+ +++|++++|++++|+||||||||||+|+|+|++. |++| + + ++++. ....
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i 181 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPI 181 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCS
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCe
Confidence 34677788887774 5889999999999999999999999999999997 8999 7 4 45532 2222
Q ss_pred EEEeeCCCCC-CCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhh--hcCCC
Q 025366 152 ATVLPMDGFH-LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQH 227 (254)
Q Consensus 152 g~~i~~~~~~-~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~a--l~~~p 227 (254)
+. +.++... .....+++.++. +.... .+ .........+++.+++.....+.+||+||+||+++|++ |+.+|
T Consensus 182 ~~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 182 FT-VPGCISATPISDILDAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SS-CSSCCEEEECCSCCCTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ee-eccchhhcccccccchhhhh-cccccccC---cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence 22 2222110 011113444443 21100 01 00111223344455554333377899999999999999 99999
Q ss_pred cE----EEEeC-CCCCCCHHHHHHHHHHhhc
Q 025366 228 KV----VIVDG-NYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 228 ~v----lIlDE-p~~~lD~~~~~~l~~ll~~ 253 (254)
++ ||||| ||++||+. ++.+.+++++
T Consensus 257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~ 286 (460)
T 2npi_A 257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK 286 (460)
T ss_dssp HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred ccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence 99 99999 99999998 7777777653
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=4.6e-23 Score=172.31 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=81.9
Q ss_pred eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCC----C--CCCCCeEEEeeCC
Q 025366 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS----Q--VKPPDVATVLPMD 158 (254)
Q Consensus 85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~----~--~~~~~~g~~i~~~ 158 (254)
|.|+... +|+++ ++|++++|+||||||||||+++|+|+ + |++|++... . ......|+ +.++
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~ 74 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT 74 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence 4565533 66885 78999999999999999999999999 7 999984210 0 00111222 2222
Q ss_pred CCCCCCcCCChhhcH-HH----HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366 159 GFHLYLSQLDAMEDP-KE----AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (254)
Q Consensus 159 ~~~~~~~~l~~~e~~-~~----~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD 233 (254)
. .+++ .+ ....... .....+.++++. ++ ||+||+++|+||+.+|++||||
T Consensus 75 ~----------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 75 L----------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp ---------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred H----------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEe
Confidence 1 1111 01 0111111 112334455553 22 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhc
Q 025366 234 GNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 234 Ep~~~lD~~~~~~l~~ll~~ 253 (254)
|||++ .+..+.++|.+
T Consensus 130 EPts~----~~~~l~~~l~~ 145 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTR 145 (208)
T ss_dssp SGGGC----CHHHHHHHHTT
T ss_pred CCccc----cHHHHHHHHHH
Confidence 99999 67788877753
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=4.3e-21 Score=188.33 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 189 LLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 189 ~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~---p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
....++++.+++.. ...+..|||||+||+++|++|+.+ |+||||||||++||+..++++.++|++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 778 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK 778 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 34577888888864 567889999999999999999986 799999999999999999999998853
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=6.7e-22 Score=159.95 Aligned_cols=46 Identities=4% Similarity=-0.174 Sum_probs=40.9
Q ss_pred CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH----------------HHHHHHHHhh
Q 025366 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----------------VWKDVSSMFD 252 (254)
Q Consensus 207 ~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~----------------~~~~l~~ll~ 252 (254)
...|+|++||+++|++++.+|++|++||||++||+. .+.++.+++.
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~ 143 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIK 143 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhh
Confidence 456999999999999999999999999999999999 5577777754
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=6.6e-23 Score=187.28 Aligned_cols=140 Identities=8% Similarity=-0.043 Sum_probs=102.5
Q ss_pred cccceeeeeCCCe--------------------EEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 96 al~~vsl~i~~Ge--------------------ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~ 154 (254)
++++++|++++|+ ++||+||||||||||+|+|+|+++ |++|+ .+++.... ..+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~- 112 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH- 112 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence 6799999999999 999999999999999999999997 99999 45553221 1244
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChh--hhhhHhhhhhhcC-------
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGL------- 225 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G--~~qrv~ia~al~~------- 225 (254)
+.+... . +.+++.+++.+. .. ...+.++++.+++........+|+| |+||+.+|++++.
T Consensus 113 v~q~~~-~--~~ltv~D~~g~~-----~~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 113 PYKHPN-I--PNVVFWDLPGIG-----ST----NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EEECSS-C--TTEEEEECCCGG-----GS----SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred eccccc-c--CCeeehHhhccc-----ch----HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 343322 1 124555544221 11 1235667777766542222239999 9999999999998
Q ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 226 ---~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+|+++|+||||++||+..++++.+++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~ 210 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIR 210 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHH
Confidence 999999999999999999988887764
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.82 E-value=6.7e-20 Score=180.76 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=55.4
Q ss_pred HHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 190 ~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...++++.+++.. ...+..|||||+||+++|++|+.+| +||||||||++||+..++.+.++|.+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 893 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 3467788888763 5678899999999999999999764 99999999999999999999998853
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.82 E-value=1.3e-19 Score=179.16 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 191 ~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..++++.+++.. ...+..|||||+||+++|++|+.+| +||||||||++||+..++.+.++|.+
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~ 911 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 456778887753 5678899999999999999999764 99999999999999999999998853
No 68
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=1.6e-19 Score=178.55 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 188 PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 188 ~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.....++++.++++ ...++..|||||+||++||++|+.+| +||||||||++||+...+.+.++|++
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~ 853 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 34567788888886 35678899999999999999998765 79999999999999999999998863
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.80 E-value=4.4e-20 Score=168.39 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=42.8
Q ss_pred CChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 209 lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+||||+||+++|++++.+| ++|||||||++||+..+..+.++|.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~ 342 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR 342 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999998864
No 70
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=4e-20 Score=157.62 Aligned_cols=133 Identities=22% Similarity=0.321 Sum_probs=87.5
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~ 174 (254)
+|+++||++++|+++||+||||||||||+++|+|++. . .++ ......+. +.++.++. .++..++..
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~-v~~d~~~~---~l~~~~~~~ 80 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVI-LSQDRFYK---VLTAEQKAK 80 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEE-EEGGGGBC---CCCHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEE-EeCCcCcc---ccCHhHhhh
Confidence 6799999999999999999999999999999999872 1 111 01223444 67765322 256666554
Q ss_pred HHHHHcCC--CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366 175 EAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 175 ~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~ 242 (254)
.....+.+ +..++...+.+.++.+.-....+++.||+||+||+.+ ++++.+|+++|+|||+...|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 43222222 2234455667777777666778889999999999987 5778899999999999888763
No 71
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.77 E-value=2.5e-21 Score=170.31 Aligned_cols=131 Identities=11% Similarity=0.085 Sum_probs=89.1
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (254)
+|++++|++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +|+++ .++.
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------~~v~ 159 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------SFAN 159 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE----------CGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE----------EEec
Confidence 478899999997 22 679999999999999999999999999999999997 23310 0011
Q ss_pred CCCCCCCCcCCChhh-cHHHHHHHcCCCCCccHHHHHHHHHh-hccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366 157 MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e-~~~~~~~~~g~~~~~~~~~~~~~l~~-l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE 234 (254)
++.. ++. -++.+ ++.+ ..... ....+.++. +..+.+ ...||+||||| |||++.+|+|||
T Consensus 160 q~~~-lf~--~ti~~~ni~~-------~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl--- 220 (305)
T 2v9p_A 160 HKSH-FWL--ASLADTRAAL-------VDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV--- 220 (305)
T ss_dssp TTSG-GGG--GGGTTCSCEE-------EEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred Cccc-ccc--ccHHHHhhcc-------Ccccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence 1111 111 12221 2111 00011 134445554 322223 67899999999 999999999999
Q ss_pred CCCCCCHHHHHHHH
Q 025366 235 NYLFLDGGVWKDVS 248 (254)
Q Consensus 235 p~~~lD~~~~~~l~ 248 (254)
|++||+...+.+.
T Consensus 221 -Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 221 -TSNIDVQAEDRYL 233 (305)
T ss_dssp -EESSCSTTCGGGG
T ss_pred -ECCCCHHHHHHHH
Confidence 9999998766654
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.76 E-value=1e-20 Score=154.36 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=46.3
Q ss_pred CCCCCCCChhhhhhHhhhhh-----hcCCCcEEEEeC--CCCCCCHHHHHHHHHHhhc
Q 025366 203 SVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~a-----l~~~p~vlIlDE--p~~~lD~~~~~~l~~ll~~ 253 (254)
..++..||+||+||+++|++ ++.+|++||+|| |++++|+..++.+.+++++
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 44566899999999999996 999999999999 9999999999999998864
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.73 E-value=1.4e-17 Score=150.24 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=46.1
Q ss_pred CCCCCCChhhhhhHhhhhhhc------CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 204 ~~~~~lS~G~~qrv~ia~al~------~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.++..|||||+||+++|+|++ .+|++|||||||++||+..++.+.++|.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~ 330 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKE 330 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHG
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 466789999999999999998 79999999999999999999999998864
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=2.1e-17 Score=146.45 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=44.8
Q ss_pred CCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 204 ~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..+..||+||+||+++|++++ .+|++|||||||++||+..++.+.+++.+
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 268 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE 268 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999986 68899999999999999999999998753
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.68 E-value=4.6e-18 Score=147.33 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=73.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~ 182 (254)
.++|+||||||||||+|+|+|+.. |++|+ .++|.... ...+. +.++.... ..+++.+++.+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~-v~q~~~~~--~~ltv~d~~~~g~~~~-- 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGH-VIEEGGVK--MKLTVIDTPGFGDQIN-- 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEE-SCC----C--CEEEEECCCC--CCSB--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEE-EeecCCCc--CCceEEechhhhhhcc--
Confidence 589999999999999999999997 99998 55553221 22343 33332211 1256667665432111
Q ss_pred CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250 (254)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~l 250 (254)
.......+...++. ...+..+.+||+||+||+++|++++. ++++|||+.+||+...+.+..+
T Consensus 76 -~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 76 -NENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp -CTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH
Confidence 11112223332221 11233456899999999999999864 9999999999999875555443
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.68 E-value=5.1e-19 Score=148.48 Aligned_cols=141 Identities=9% Similarity=-0.026 Sum_probs=77.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEEeeCCCCCCCCcCCChhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAME 171 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~e 171 (254)
.|+++||++++|++++|+||||||||||+++|+|++ | |+ .+ +... .+..+. ...-++... +...
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~-~~~i~~~~~----~~~~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKE-KEGVDYYFI----DKTI 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSC-CBTTTBEEC----CHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCccc-ccCCeEEEC----CHHH
Confidence 569999999999999999999999999999999987 5 66 33 3110 000000 000011100 0000
Q ss_pred cHHHHHH---Hc--C-CCC---CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhh-----hhhhcCCCcEEEEeCCCC
Q 025366 172 DPKEAHA---RR--G-APW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 172 ~~~~~~~---~~--g-~~~---~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~i-----a~al~~~p~vlIlDEp~~ 237 (254)
...... .. + +.. ......+.++++..... .....+||||+||+++ +++++.+|++++||||++
T Consensus 80 -~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~ 156 (218)
T 1z6g_A 80 -FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLL 156 (218)
T ss_dssp -HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHH
T ss_pred -HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHH
Confidence 000000 00 0 000 01123445555543221 1114679999999999 889999999999999999
Q ss_pred CCCHHHHHHHHHHh
Q 025366 238 FLDGGVWKDVSSMF 251 (254)
Q Consensus 238 ~lD~~~~~~l~~ll 251 (254)
.+|....+.+.+.+
T Consensus 157 ~~d~~~~~~i~~~l 170 (218)
T 1z6g_A 157 TRNTENQEQIQKRM 170 (218)
T ss_dssp HTCCCCHHHHHHHH
T ss_pred hcCCCCHHHHHHHH
Confidence 99987776666655
No 77
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.67 E-value=2.5e-18 Score=142.57 Aligned_cols=129 Identities=23% Similarity=0.258 Sum_probs=90.0
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (254)
.++|+++||+||||||||||+++|+|++. +..+. +.++.++.....++..++..+ .++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------------~~i~~-v~~d~~~~~~~~~~~~~~~~~---~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG----------------ERVAL-LPMDHYYKDLGHLPLEERLRV---NYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG----------------GGEEE-EEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC----------------CCeEE-EecCccccCcccccHHHhcCC---CCCCh
Confidence 46899999999999999999999999983 23444 777776543333454443221 12333
Q ss_pred CCccHHHHHHHHHhhccCCC--CCCCCCChhhh----hhHhhhhhhcCCCcEEEEeCCCCC-------CCHHHHHHHHHH
Q 025366 184 WTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM 250 (254)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~----qrv~ia~al~~~p~vlIlDEp~~~-------lD~~~~~~l~~l 250 (254)
...+...+.+.++.+++... .++..+|+|++ ||++++++++.+|.++++|||+.+ ||......+.+.
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 44556677778887776533 34557888864 677888888888888888998888 888777777666
Q ss_pred hh
Q 025366 251 FD 252 (254)
Q Consensus 251 l~ 252 (254)
+.
T Consensus 143 l~ 144 (211)
T 3asz_A 143 LK 144 (211)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.66 E-value=9.3e-18 Score=147.59 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=77.0
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-CCC-------------CeEEEeeCCCCCC
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-KPP-------------DVATVLPMDGFHL 162 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-~~~-------------~~g~~i~~~~~~~ 162 (254)
.+++|++++|++++|+||||||||||++.|+|+++ |+.|+ .+.+.. .+. ..+. +.++....
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~-v~q~~~~~ 166 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VVAEGDKA 166 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE-ECCC--CC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceE-EEecCCcc
Confidence 57899999999999999999999999999999997 77776 333211 110 1122 22211100
Q ss_pred CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCC
Q 025366 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLF 238 (254)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~ 238 (254)
.+..++.+++.+... .+. + ..+++.+++. .+.++.+|| +||+++|++++.+|+ +|++| ||++
T Consensus 167 -~~~~~v~e~l~~~~~-~~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 167 -KAATVLSKAVKRGKE-EGY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp -CHHHHHHHHHHHHHH-TTC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred -CHHHHHHHHHHHHHH-cCC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 001122333322111 000 0 0011111111 112233566 899999999999999 99999 9999
Q ss_pred CCHHHH
Q 025366 239 LDGGVW 244 (254)
Q Consensus 239 lD~~~~ 244 (254)
+|+..+
T Consensus 233 lD~~~~ 238 (302)
T 3b9q_A 233 LNMLPQ 238 (302)
T ss_dssp GGGHHH
T ss_pred cCHHHH
Confidence 999755
No 79
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=4e-17 Score=134.57 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=89.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCCCCeE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKPPDVA 152 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~~~~g 152 (254)
.+|+++|+++.|+. . ++++ |.+.+|..++|+|+||||||||++.|+|.. ....|+.|+ ...+.......-
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 36899999999973 2 5577 899999999999999999999999999986 001166675 211100000001
Q ss_pred EEeeCCCCCCCCcCCChhh----cHHHHHHHcC------------CCCCccHHHHHHHHHhhccCC---CCCCCCCChhh
Q 025366 153 TVLPMDGFHLYLSQLDAME----DPKEAHARRG------------APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV 213 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e----~~~~~~~~~g------------~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~ 213 (254)
.++...|+..........+ .......... .........+...++..++.. ..++..+|+|+
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 1223333321100000000 0111111000 011111223344444443321 23445789999
Q ss_pred hhh-HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 214 GDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 214 ~qr-v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+|+ +..+++++.++.++++|||++++|....+++.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 999 788998888888899999999999999999888775
No 80
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.64 E-value=6.6e-17 Score=141.41 Aligned_cols=125 Identities=22% Similarity=0.286 Sum_probs=88.2
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHH------H
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H 177 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~------~ 177 (254)
-.++.+|||+|++|||||||++.|.+++. +. |. ....+.++.+|+++... +..+++.+. .
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 35689999999999999999999999985 11 10 01234445999987642 233333322 1
Q ss_pred HHcCCCCCccHHHHHHHHHhhccC------CCC----CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 178 ~~~g~~~~~~~~~~~~~l~~l~l~------~~~----~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~ 242 (254)
...|.+..++...+.+.++.+..+ ... +-..+||||+||+++|++...+|+|||+||+++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 123468888888899999988776 222 33456899999999874432289999999999999984
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.62 E-value=5.2e-17 Score=145.82 Aligned_cols=130 Identities=10% Similarity=0.047 Sum_probs=77.2
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC-CCCC-------------CeEEEeeCCCCCC
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKPP-------------DVATVLPMDGFHL 162 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~-~~~~-------------~~g~~i~~~~~~~ 162 (254)
..++|++++|++++|+||||||||||++.|+|+++ |+.|+ .+.+. ..+. ..+. +.++....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~-v~q~~~~~ 223 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VVAEGDKA 223 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE-ECCSSSSC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEE-EEeccccc
Confidence 46889999999999999999999999999999997 67666 33321 1110 1122 22211100
Q ss_pred CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCC
Q 025366 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLF 238 (254)
Q Consensus 163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~ 238 (254)
. +..++.+++.+... .+. +. .+++.+++. .+.++.+|| +||+++|++++.+|+ +|++| ||++
T Consensus 224 ~-p~~tv~e~l~~~~~-~~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 224 K-AATVLSKAVKRGKE-EGY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp C-HHHHHHHHHHHHHH-TTC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred C-hhhhHHHHHHHHHh-CCC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 0 01122333322211 000 00 001111111 112233566 899999999999999 99999 9999
Q ss_pred CCHHHHH
Q 025366 239 LDGGVWK 245 (254)
Q Consensus 239 lD~~~~~ 245 (254)
+|+..+.
T Consensus 290 lD~~~~~ 296 (359)
T 2og2_A 290 LNMLPQA 296 (359)
T ss_dssp GGGHHHH
T ss_pred CCHHHHH
Confidence 9997653
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.61 E-value=3e-16 Score=139.57 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=67.8
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
++++++|.+++|++++|+||||||||||+++|+|+++ |++|. +.+++..... +....
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~--------------i~i~~~~e~~--~~~~~---- 216 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERI--------------ISIEDTEEIV--FKHHK---- 216 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCE--------------EEEESSCCCC--CSSCS----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcE--------------EEECCeeccc--cccch----
Confidence 5699999999999999999999999999999999996 55554 3333321000 00000
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~ 237 (254)
...++.. .+||+||+++++||..+|++||+|||++
T Consensus 217 --~~i~~~~-------------------------ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 217 --NYTQLFF-------------------------GGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp --SEEEEEC-------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred --hEEEEEe-------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 0000000 0899999999999999999999999998
No 83
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.61 E-value=1.9e-17 Score=145.94 Aligned_cols=142 Identities=20% Similarity=0.355 Sum_probs=96.0
Q ss_pred eEEEecceeecccccceeccccceeeee-------------------CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i-------------------~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~ 137 (254)
+|++++|++.|+. +++++++.+ .+|+++||+||||||||||+++|+|++.. +|+
T Consensus 37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 5889999999953 669999988 88999999999999999999999999830 123
Q ss_pred CceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC-CCCCCCChhhhhh
Q 025366 138 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDP 216 (254)
Q Consensus 138 ~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qr 216 (254)
+|+ ..++.+|+++... ......... ..++.+...+.......+..+..+.. ...|.|+....+|
T Consensus 110 ~G~-----------i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~ 174 (308)
T 1sq5_A 110 HRR-----------VELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDV 174 (308)
T ss_dssp CCC-----------EEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEE
T ss_pred CCe-----------EEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCc
Confidence 331 2235557765321 000000000 11233334455555566666655544 6678888888888
Q ss_pred HhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 217 VEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 217 v~ia~al~~~p~vlIlDEp~~~lD 240 (254)
+..+.+.+.+++++|+|+|+++.+
T Consensus 175 ~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 175 IPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp CTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ccccceecCCCCEEEECchhhCCC
Confidence 876656667889999999999987
No 84
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.59 E-value=2.2e-16 Score=141.29 Aligned_cols=144 Identities=11% Similarity=0.045 Sum_probs=88.4
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~ 154 (254)
.++++++++++.|+.. +.+++++ |.|.+|+++||+||||||||||+++|+|+.. |+.|.
T Consensus 43 ~~~i~~~~l~~~~~tg---~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~-------------- 101 (347)
T 2obl_A 43 PDPLLRQVIDQPFILG---VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIV-------------- 101 (347)
T ss_dssp SCSTTCCCCCSEECCS---CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEE--------------
T ss_pred CCCeeecccceecCCC---CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEE--------------
Confidence 3568899999999832 2277999 9999999999999999999999999999985 54443
Q ss_pred eeCCCCCCCCcCCChhhcH-----HHHHHHcCC-CCC--ccHHHHHH------HHHhhcc-CCC-----CCCCCCChhhh
Q 025366 155 LPMDGFHLYLSQLDAMEDP-----KEAHARRGA-PWT--FNPLLLLN------CLKNLRN-QGS-----VYAPSFDHGVG 214 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~-----~~~~~~~g~-~~~--~~~~~~~~------~l~~l~l-~~~-----~~~~~lS~G~~ 214 (254)
+...|.... .+.+.. ....+...+ .+. ....++.. +.+.+.. +.+ ..+..||+||
T Consensus 102 i~~~G~~~~----ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~- 176 (347)
T 2obl_A 102 LALIGERGR----EVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA- 176 (347)
T ss_dssp EEEESCCHH----HHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-
T ss_pred EEEecccHH----HHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-
Confidence 222222100 000000 000000000 000 01111111 1111111 111 3456789999
Q ss_pred hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
||+++| +.+|++ +.|+|+....++.+++++
T Consensus 177 r~v~la---l~~p~~------t~Gldp~~~~~l~~ller 206 (347)
T 2obl_A 177 RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLER 206 (347)
T ss_dssp HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTT
T ss_pred HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHH
Confidence 899988 366666 899999999999999865
No 85
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.58 E-value=3.7e-16 Score=156.73 Aligned_cols=132 Identities=15% Similarity=0.104 Sum_probs=82.1
Q ss_pred ceEEEec-----ceeec-ccccceeccccceeeeeCC-------CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceec
Q 025366 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (254)
Q Consensus 76 ~~l~i~~-----l~~~y-~~~~~~vlal~~vsl~i~~-------GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~ 142 (254)
++|++++ |++.| ++. . +++|++|++++ |++++|+||||||||||||+| |++. +
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~--~--v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDD--F--IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---V------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CCC--C--CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---H------
T ss_pred ceEEEEeccccEEEEEecCCc--e--EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---H------
Confidence 4699999 99999 442 2 56999999987 899999999999999999999 9874 1
Q ss_pred CCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhh
Q 025366 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (254)
Q Consensus 143 ~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~a 222 (254)
....|.+++++... +++.+++.. ..|..+. .......|+++|.+ ++++++
T Consensus 815 -----~aqiG~~Vpq~~~~-----l~v~d~I~~---rig~~d~----------------~~~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 815 -----MAQMGCYVPAEVCR-----LTPIDRVFT---RLGASDR----------------IMSGESTFFVELSE-TASILM 864 (1022)
T ss_dssp -----HHTTTCCEESSEEE-----ECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred -----HhheeEEeccCcCC-----CCHHHHHHH---HcCCHHH----------------HhhchhhhHHHHHH-HHHHHH
Confidence 11223223333211 232222200 1121100 01123466777765 899999
Q ss_pred hcCCCcEEEEeCCCCCCCHHHH-HHHHHHh
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVW-KDVSSMF 251 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~-~~l~~ll 251 (254)
++.+|++||||||+.|+|+... ..+.+++
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il 894 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVV 894 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHH
Confidence 9999999999999999998763 3344444
No 86
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.58 E-value=2.1e-17 Score=146.32 Aligned_cols=139 Identities=25% Similarity=0.402 Sum_probs=103.1
Q ss_pred ceeecccccceeccccceeeeeCCCe------EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366 83 MDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (254)
Q Consensus 83 l~~~y~~~~~~vlal~~vsl~i~~Ge------ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~ 156 (254)
|+..|++.. ++.+++..+.++. ++||+||||||||||+++|++++.. +|+. ...+ ++.
T Consensus 66 l~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~----------~~v~-~i~ 129 (321)
T 3tqc_A 66 LSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDH----------PNVE-VIT 129 (321)
T ss_dssp HHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTC----------CCEE-EEE
T ss_pred HHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCC----------CeEE-EEe
Confidence 344555533 5677777776665 9999999999999999999999841 1111 2334 489
Q ss_pred CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (254)
Q Consensus 157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp 235 (254)
+|+++..... .+. ......+|.++.++...+.+.++.+..+. .+..|.||++..+|+......+..++|||+||+
T Consensus 130 ~D~f~~~~~~---l~~-~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi 205 (321)
T 3tqc_A 130 TDGFLYSNAK---LEK-QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGL 205 (321)
T ss_dssp GGGGBCCHHH---HHH-TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred ecccccchhh---hhh-HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcc
Confidence 9998754311 110 01113467788899999999999998887 788999999999998766666789999999999
Q ss_pred CCCCCH
Q 025366 236 YLFLDG 241 (254)
Q Consensus 236 ~~~lD~ 241 (254)
+...|+
T Consensus 206 ~lL~~~ 211 (321)
T 3tqc_A 206 NILQTG 211 (321)
T ss_dssp TTTCCC
T ss_pred cccccc
Confidence 999987
No 87
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.57 E-value=4.1e-17 Score=150.32 Aligned_cols=147 Identities=10% Similarity=0.031 Sum_probs=90.2
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC---C----
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---K---- 147 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~---~---- 147 (254)
++++++++++.|+.. +.+++++ |++.+|++++|+||||||||||+++|+|+.. |+.|. .+.|+. .
T Consensus 130 ~~l~~~~v~~~~~tg---~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~~ 202 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG---VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDFI 202 (438)
T ss_dssp CTTTSCCCCSBCCCS---CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHHH
T ss_pred CceEEeccceecCCC---ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHHH
Confidence 468899999999732 1277999 9999999999999999999999999999995 66655 233320 0
Q ss_pred ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHh
Q 025366 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (254)
Q Consensus 148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ 218 (254)
....+. +.+++.... ..+++.++..+....+.. +. +.+.. .-..+..||+|| ||++
T Consensus 203 ~~~~~~~~l~r~i~~-v~q~~~~~~-~~~~v~~~~~~~ae~~~~-~~----------~~v~~-~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 203 ENILGPDGRARSVVI-AAPADVSPL-LRMQGAAYATRIAEDFRD-RG----------QHVLL-IMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HTTTHHHHHHTEEEE-EECTTSCHH-HHHHHHHHHHHHHHHHHT-TT----------CEEEE-EEECHHHHHHHH-HHHH
T ss_pred HhhccccccCceEEE-EECCCCCHH-HHHHHHHHHHHHHHHHHh-CC----------CCHHH-HHHhHHHHHHHH-HHHH
Confidence 001121 222211100 001111211111111000 00 00000 001245689999 9999
Q ss_pred hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+| +.+|++ ++++|+.....+.+++++
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r 293 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVER 293 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTT
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHH
Confidence 98 677877 999999999999998864
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.57 E-value=4e-15 Score=129.74 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=35.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|+++++.+++|++++|+||||||||||++.|+|.+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999985
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.56 E-value=1.8e-16 Score=157.07 Aligned_cols=116 Identities=17% Similarity=0.082 Sum_probs=74.9
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+++|++|++++|++++|+||||||||||||+|+++.-. +..|.. .+..... +..... ...
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~~-----vpa~~~~-i~~~d~--------i~~---- 721 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGSY-----VPAEEAT-IGIVDG--------IFT---- 721 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTCC-----BSSSEEE-EECCSE--------EEE----
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCcc-----ccchhhh-hhHHHH--------HHH----
Confidence 56999999999999999999999999999999876520 111100 0111111 111000 000
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH-HHh
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMF 251 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~-~ll 251 (254)
..+.. + ........||+||++++.++++ +.+|++||||||++|+|+.....+. .++
T Consensus 722 ---~ig~~------------d----~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il 778 (918)
T 3thx_B 722 ---RMGAA------------D----NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATL 778 (918)
T ss_dssp ---EC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred ---hCChH------------H----HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01100 0 0122346789999999999888 6899999999999999998877775 444
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.56 E-value=1.1e-15 Score=143.71 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=91.0
Q ss_pred eEEEecceeecccccceeccccc-eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366 77 VVEARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~-vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i 155 (254)
.+++++++..|+.. +. ++..+.+|++++|+|+||||||||++.++|+.. + .|+ ...++
T Consensus 257 ~~~~~~l~~g~~~l-------d~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~-~G~----------~vi~~ 315 (525)
T 1tf7_A 257 RSSNVRVSSGVVRL-------DEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC---A-NKE----------RAILF 315 (525)
T ss_dssp CCCCCEECCSCHHH-------HHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---T-TTC----------CEEEE
T ss_pred ccccceeecChHHH-------HHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---h-CCC----------CEEEE
Confidence 35566666656432 22 245899999999999999999999999999985 3 231 11112
Q ss_pred eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc--CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (254)
Q Consensus 156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD 233 (254)
.... +.. .+......+++ +... +. ..++ ..+.++..||+||+||+.+|+++..+|++||+|
T Consensus 316 ~~ee--------~~~-~l~~~~~~~g~----~~~~---~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 316 AYEE--------SRA-QLLRNAYSWGM----DFEE---ME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp ESSS--------CHH-HHHHHHHTTSC----CHHH---HH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeC--------CHH-HHHHHHHHcCC----CHHH---HH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 2211 111 11111122332 1121 21 2221 245566789999999999999999999999999
Q ss_pred CCCCCCCHH-----HHHHHHHHhh
Q 025366 234 GNYLFLDGG-----VWKDVSSMFD 252 (254)
Q Consensus 234 Ep~~~lD~~-----~~~~l~~ll~ 252 (254)
|+++||.. .++.+.+++.
T Consensus 379 -p~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 379 -SLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp -CHHHHTSSSCHHHHHHHHHHHHH
T ss_pred -ChHHHHhhCChHHHHHHHHHHHH
Confidence 99999999 8888888764
No 91
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.55 E-value=2.8e-14 Score=127.14 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=44.2
Q ss_pred CCCCCCChhhhh------hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 204 ~~~~~lS~G~~q------rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.++..||+||+| |+++|++++.+|++|||||||++||+..+..+.+++.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~ 299 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 456789999999 66778888889999999999999999999999988753
No 92
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.55 E-value=1.9e-16 Score=139.10 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=64.2
Q ss_pred ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh-hcccCCCCceecCCCCC-----CCCeEEE
Q 025366 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVK-----PPDVATV 154 (254)
Q Consensus 81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl-l~~~~p~~G~~~~~~~~-----~~~~g~~ 154 (254)
+||++.|++.. ++++++|+| +|+|+||+|||||+++|+|. +. |++|..+.|... ....+..
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence 47899998744 679999998 99999999999999999987 54 777721222111 1112332
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE 234 (254)
+..++... .+++++.+.+..... ..+ .+..+.+.+....+.++..+|+|++||+.+|++++ +|++||
T Consensus 69 ~q~~~~~~---~ltv~Dt~g~~~~~~-~~e-----~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 69 IEERGVKL---RLTVVDTPGYGDAIN-CRD-----CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EC---CCE---EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred ecCCCccc---CcchhhhhhhhhhcC-cHH-----HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 22222211 245555544321110 000 01111111111123456789999999999999885 999999
Q ss_pred CCCC-CCHHHHHHHH
Q 025366 235 NYLF-LDGGVWKDVS 248 (254)
Q Consensus 235 p~~~-lD~~~~~~l~ 248 (254)
|+.. ||+...+.+.
T Consensus 136 Pt~~~Ld~~~~~~l~ 150 (301)
T 2qnr_A 136 PFGHGLKPLDVAFMK 150 (301)
T ss_dssp SSSSSCCHHHHHHHH
T ss_pred CcccCCCHHHHHHHH
Confidence 9985 9997754333
No 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.52 E-value=7.2e-16 Score=127.96 Aligned_cols=124 Identities=31% Similarity=0.536 Sum_probs=78.6
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~ 183 (254)
.++|++++|+||||||||||+++|+|++. |. | +..|. +.++++++... ..++... ....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~---~~~~~~~-~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNR---LLEPRGL-LPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHH---HHGGGTC-GGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHH---HHHHhcc-cccCCCC
Confidence 57899999999999999999999999994 21 1 24565 88998865321 1111100 0123445
Q ss_pred CCccHHHHHHHHHhhccCCCCCCC------CCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 184 WTFNPLLLLNCLKNLRNQGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 184 ~~~~~~~~~~~l~~l~l~~~~~~~------~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
..++...+.+.+..+..+.....+ ..|+|++|+++. .++++|+|+++..+|+..|..+.+.+
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~------~~~~~i~eg~~~l~de~~~~~l~~~~ 148 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP------ECRVAIIEGNYLLFDAPGWRDLTAIW 148 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT------TCCEEEEEESSTTBCSTTGGGGGGTC
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC------CCcEEEECCceeccCCchhHHHHHhc
Confidence 556666666677766555333323 346777777653 34678888888878776555444433
No 94
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.51 E-value=1e-14 Score=130.93 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=44.9
Q ss_pred CCC-CCChhhhhhHhhhhhhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 205 YAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 205 ~~~-~lS~G~~qrv~ia~al~---------~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++. .+|+||+||+++|++|+ .+|+||||||||++||+..+..+.+++.+
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence 344 69999999999999999 89999999999999999999999998854
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.51 E-value=1.8e-14 Score=140.71 Aligned_cols=112 Identities=22% Similarity=0.225 Sum_probs=74.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+++|++|+ |++++|+||||||||||+|+|+|+.. .++.|..+ +..... +.+-...+. .+++.+
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~v-----pa~~~~-i~~v~~i~~--~~~~~d---- 630 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFV-----PAEEAH-LPLFDGIYT--RIGASD---- 630 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCB-----SSSEEE-ECCCSEEEE--ECCC------
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCcee-----ehhccc-eeeHHHhhc--cCCHHH----
Confidence 56999998 99999999999999999999999862 03444311 111111 111000000 011111
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh--cCCCcEEEEeCC---CCCCCHHHH-HHHHH
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS 249 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al--~~~p~vlIlDEp---~~~lD~~~~-~~l~~ 249 (254)
++ ...+|+++++++.+++++ +.+|+++|+||| |+++|.... ..+.+
T Consensus 631 ---------------------~l-------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~ 682 (765)
T 1ewq_A 631 ---------------------DL-------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE 682 (765)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred ---------------------HH-------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence 01 123689999999999999 999999999999 999998765 45666
Q ss_pred Hhh
Q 025366 250 MFD 252 (254)
Q Consensus 250 ll~ 252 (254)
.+.
T Consensus 683 ~L~ 685 (765)
T 1ewq_A 683 ALH 685 (765)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=2.6e-14 Score=141.97 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=68.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+++|++|++++|++++|+||||||||||+|+|++..- .+..|.. .|..+..+...+. ...
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~--------i~~---- 710 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDC--------ILA---- 710 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSE--------EEE----
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHH--------HHH----
Confidence 5699999999999999999999999999999954431 0111100 1111111111100 000
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh--cCCCcEEEEeCCCCCCCHHHHHHH
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV 247 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al--~~~p~vlIlDEp~~~lD~~~~~~l 247 (254)
..|. . +.....+|++++++..+++++ +.+|++||||||++|+|+.....+
T Consensus 711 ---~ig~------------------~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i 762 (934)
T 3thx_A 711 ---RVGA------------------G-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL 762 (934)
T ss_dssp ---ECC----------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred ---hcCc------------------h-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence 1111 1 111245677777777777777 899999999999999999877666
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.50 E-value=1.2e-14 Score=125.20 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=72.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-Cce-ecCCCCCCCCeEEE
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS-SFDSQVKPPDVATV 154 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-~G~-~~~~~~~~~~~g~~ 154 (254)
++++++|.+. . +|++++ +++|++++|+||||||||||+++|+|+++ |+ +|+ .+.++.. .
T Consensus 5 ~~~l~~l~~~--~------vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~-- 65 (261)
T 2eyu_A 5 IPEFKKLGLP--D------KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----E-- 65 (261)
T ss_dssp -CCGGGSSCC--T------HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----C--
T ss_pred CCChHHCCCH--H------HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----e--
Confidence 3456677642 1 669998 89999999999999999999999999996 55 565 2222210 0
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE 234 (254)
+ ........ +.+. .+++. ... -|++++++|..+|++|++||
T Consensus 66 -----~-~~~~~~~~------------v~q~-----------~~gl~----~~~------l~~~la~aL~~~p~illlDE 106 (261)
T 2eyu_A 66 -----Y-VFKHKKSI------------VNQR-----------EVGED----TKS------FADALRAALREDPDVIFVGE 106 (261)
T ss_dssp -----S-CCCCSSSE------------EEEE-----------EBTTT----BSC------HHHHHHHHHHHCCSEEEESC
T ss_pred -----e-ecCCccee------------eeHH-----------HhCCC----HHH------HHHHHHHHHhhCCCEEEeCC
Confidence 0 00000000 0000 11111 011 28999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 025366 235 NYLFLDGGVWKDVSSM 250 (254)
Q Consensus 235 p~~~lD~~~~~~l~~l 250 (254)
|+ |+.....+.+.
T Consensus 107 p~---D~~~~~~~l~~ 119 (261)
T 2eyu_A 107 MR---DLETVETALRA 119 (261)
T ss_dssp CC---SHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHH
Confidence 99 98876655443
No 98
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=133.17 Aligned_cols=143 Identities=10% Similarity=-0.012 Sum_probs=76.3
Q ss_pred cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce---ecCCCC-CC-C
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQV-KP-P 149 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~---~~~~~~-~~-~ 149 (254)
..+|++++|++.|++.. ++++++|+| +|+|+||||||||+++|+|... +..|. ...... .. .
T Consensus 9 ~~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~ 75 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVE 75 (418)
T ss_dssp ------CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEE
T ss_pred cCcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeee
Confidence 35799999999998744 679999998 9999999999999999999874 44432 111100 00 0
Q ss_pred CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCc-
Q 025366 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK- 228 (254)
Q Consensus 150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~- 228 (254)
..+.++..++.. ..+++++++.+...... ......+.+.++ ..|+.++++|++++++++.+|+
T Consensus 76 ~i~~v~q~~~~~---~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~----------~~~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 76 QSKVLIKEGGVQ---LLLTIVDTPGFGDAVDN---SNCWQPVIDYID----------SKFEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp EEECC------C---EEEEEEECC--------------CHHHHHHHH----------HHHHHHTTTSCC-CCCCCCCC-C
T ss_pred eEEEEEecCCcc---cceeeeechhhhhhccc---hhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCe
Confidence 011111111111 12455665544221100 001112222222 1345678899999999999999
Q ss_pred --EEEEeCCC-CCCCHHHHHH
Q 025366 229 --VVIVDGNY-LFLDGGVWKD 246 (254)
Q Consensus 229 --vlIlDEp~-~~lD~~~~~~ 246 (254)
+|++|||+ .++|+....-
T Consensus 140 ~vlL~ldePt~~~L~~~d~~~ 160 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDIEF 160 (418)
T ss_dssp CEEEEECCC-CCSCCHHHHHH
T ss_pred eEEEEEecCcccCCCHHHHHH
Confidence 99999999 6999876433
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=8.5e-17 Score=132.27 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=39.0
Q ss_pred CCCChhhhhhHh-hhh---hhcCCCcEEEEeC--CCCCCCHHHHHHHHHHhhc
Q 025366 207 PSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 207 ~~lS~G~~qrv~-ia~---al~~~p~vlIlDE--p~~~lD~~~~~~l~~ll~~ 253 (254)
..+|+||++++. +.+ |+..+|+|||+|| |+..+|+..++.+.++++.
T Consensus 82 ~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 357889998884 344 5789999999999 8988999999999998864
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.49 E-value=2.1e-17 Score=137.18 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=26.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++| .++++|++++|+||||||||||+|+|+|+++
T Consensus 11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4477 6899999999999999999999999999983
No 101
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.47 E-value=2e-15 Score=127.53 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=35.7
Q ss_pred cceEEEecceeecccccceecccccee-eeeCCCeEEEEECCCCCcHHHHHHHHH--Hhh
Q 025366 75 IPVVEARCMDEVYDALAQRLLPTSALA-SNVNVKHIVGLAGPPGAGKSTLAAEVV--RRI 131 (254)
Q Consensus 75 ~~~l~i~~l~~~y~~~~~~vlal~~vs-l~i~~GeivgLiGpNGsGKSTLlk~L~--Gll 131 (254)
+.+++++.++..+... +.+- =.+++|++++|+||||||||||+++|+ |++
T Consensus 4 ~~~~~~~~i~tg~~~l-------D~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~ 56 (251)
T 2ehv_A 4 MAYQPVRRVKSGIPGF-------DELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp ----CCCEECCSCTTT-------GGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccccccceeecCCHhH-------HHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3456667776666542 3321 168999999999999999999999999 663
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.44 E-value=1.9e-15 Score=142.23 Aligned_cols=144 Identities=10% Similarity=0.055 Sum_probs=82.9
Q ss_pred ceEEEecceeecccccceeccccceee-eeCCCeEEEEECCCCCcHHHHHHH--HHHhhcccCCCCceecCCCCCCCCeE
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVA 152 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl-~i~~GeivgLiGpNGsGKSTLlk~--L~Gll~~~~p~~G~~~~~~~~~~~~g 152 (254)
.+++.+++.+.+.+.. +|++++| .+++|++++|+||||||||||+++ ++|+++ |++|
T Consensus 11 ~~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g------------- 70 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEP------------- 70 (525)
T ss_dssp ---CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCC-------------
T ss_pred CCccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCC-------------
Confidence 3566677766665533 7899999 999999999999999999999999 789985 4444
Q ss_pred EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---CCC----CCCCCCChhhhhhHhhhhhh-c
Q 025366 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGS----VYAPSFDHGVGDPVEDDILV-G 224 (254)
Q Consensus 153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---~~~----~~~~~lS~G~~qrv~ia~al-~ 224 (254)
. +.+++.. . ........+.+|+. ....... .++.. ... .....+.-+. ....+..+| .
T Consensus 71 ~-i~v~g~~------~-~~~~~~~~~~~g~~----~q~~~~~-~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~ 136 (525)
T 1tf7_A 71 G-VFVTFEE------T-PQDIIKNARSFGWD----LAKLVDE-GKLFILDASPDPEGQEVVGGFDLSA-LIERINYAIQK 136 (525)
T ss_dssp E-EEEESSS------C-HHHHHHHHGGGTCC----HHHHHHT-TSEEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHH
T ss_pred E-EEEEEeC------C-HHHHHHHHHHcCCC----hHHhhcc-CcEEEEecCcccchhhhhcccCHHH-HHHHHHHHHHH
Confidence 2 3344432 1 11112222234431 1111100 01111 000 0011111121 222334445 4
Q ss_pred CCCcEEEEeCCCCC-----CCHHHHHHHHHHhhc
Q 025366 225 LQHKVVIVDGNYLF-----LDGGVWKDVSSMFDE 253 (254)
Q Consensus 225 ~~p~vlIlDEp~~~-----lD~~~~~~l~~ll~~ 253 (254)
.+|++|++|||++. +|+..++.+.+++.+
T Consensus 137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~ 170 (525)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVAR 170 (525)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 68999999999985 588899999888753
No 103
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.44 E-value=3.6e-13 Score=116.47 Aligned_cols=130 Identities=15% Similarity=0.090 Sum_probs=79.5
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCC-CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~-~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g 181 (254)
.+++|++++|+||||||||||++.|++.+. .|..+.|.... .....++.... +. +.+.......+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~~~~~v~~~~~e~--------~~-~~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGELPTGPVIYLPAED--------PP-TAIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCCCCCCEEEEESSS--------CH-HHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccCCCccEEEEECCC--------CH-HHHHHHHHHHH
Confidence 477999999999999999999999999773 34422222111 11111122211 11 11111111222
Q ss_pred CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC--CCCHHHH---HHHHHHh
Q 025366 182 APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW---KDVSSMF 251 (254)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~--~lD~~~~---~~l~~ll 251 (254)
. .........+++++.+. .+..+..||+|+.+++ ++++.+|++||+|||++ ++|+... .++.+.|
T Consensus 92 ~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 A--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp T--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred h--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 2 22334455667777664 3456788999997766 46777999999999999 8887544 4444443
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.44 E-value=5.1e-16 Score=148.53 Aligned_cols=143 Identities=8% Similarity=0.082 Sum_probs=69.7
Q ss_pred eEEEecceeecccccceeccccce----------eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDS 144 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~v----------sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~ 144 (254)
.+++++|++.|+...+.++ +.+ +++++. ++|+||||||||||+++|+|+.. | ++|+ .++|
T Consensus 10 ~i~~~~l~~~~~~~~r~ll--~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCI--DLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHHHHH--HHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHHHHH--HHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 5788999999986433222 322 355553 99999999999999999999985 7 6887 4444
Q ss_pred CCC-------CCCeEEEeeCCCC--CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhh
Q 025366 145 QVK-------PPDVATVLPMDGF--HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGD 215 (254)
Q Consensus 145 ~~~-------~~~~g~~i~~~~~--~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~q 215 (254)
... .......+.+..+ .+. +..++.+++.+.. ..+... . . +...+
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~-~~~tv~e~i~~~~------------------~~~~~~-~---~---~~s~~ 135 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEIS-DASEVEKEINKAQ------------------NAIAGE-G---M---GISHE 135 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCC-CHHHHHTTHHHHH------------------HHHHCS-S---S---CCCSC
T ss_pred EEEEEecCCccccceeEEeeecccccCC-CHHHHHHHHHHHH------------------HHhcCC-c---c---ccchH
Confidence 210 0001111111000 000 0012222222111 111110 0 1 12235
Q ss_pred hHhhhhhhcCCCcEEEEeCC------CCCCCHHHHHHHHHHhhc
Q 025366 216 PVEDDILVGLQHKVVIVDGN------YLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp------~~~lD~~~~~~l~~ll~~ 253 (254)
++.++.+....|+++|+||| +++||+..+..+.+++..
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 56666667778999999999 999999999999888753
No 105
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=1.5e-14 Score=115.54 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=51.3
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~ 145 (254)
++..++++.|++.. +++++||++++|++++|+||||||||||+|+|+|++ |++|+ .+++.
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~ 68 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTY 68 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTT
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCE
Confidence 44557888997633 679999999999999999999999999999999998 88998 55553
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.41 E-value=2e-13 Score=113.79 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=67.2
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~ 182 (254)
.+++|++++|+||||||||||+++|+|+.. +..|.. ....+. +.+++.... . .+.+....+..++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~g------~~~~~~-i~~~~~~~~----~-~~~i~~~~~~~~~ 85 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEEG------GLNGSV-IWIDTENTF----R-PERIREIAQNRGL 85 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGGT------CCSCEE-EEEESSSCC----C-HHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh---cccccC------CCCCEE-EEEECCCCC----C-HHHHHHHHHHcCC
Confidence 688999999999999999999999999764 322210 011122 444443211 1 1233333444443
Q ss_pred CCCccHHHHHHHHHhhccCCCCCCCCCChhhh-hhHhhhhhhc-------CCCcEEEEeCCCCCCCHH
Q 025366 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG-DPVEDDILVG-------LQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~-qrv~ia~al~-------~~p~vlIlDEp~~~lD~~ 242 (254)
. . .++.+++.+.. .++.+++ +.+..+.+++ .+|++|++|||++++|+.
T Consensus 86 ~----~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 86 D----P---DEVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp C----H---HHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred C----H---HHHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 2 1 15666665432 2334333 2244444443 489999999999999883
No 107
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.41 E-value=1.7e-14 Score=128.75 Aligned_cols=157 Identities=33% Similarity=0.567 Sum_probs=116.4
Q ss_pred cccceeeeeCCCeE--EEEECCCCCcHHHHHHHHHHhhcccC--------------------------------------
Q 025366 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (254)
Q Consensus 96 al~~vsl~i~~Gei--vgLiGpNGsGKSTLlk~L~Gll~~~~-------------------------------------- 135 (254)
+++.+++.+++|++ ++|+|++||||||+.++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 45888899999988 99999999999999999999764211
Q ss_pred -CCCceecC----------------------------CC--------------CCC---C---CeEEEeeCCCCCCCCcC
Q 025366 136 -PQKASSFD----------------------------SQ--------------VKP---P---DVATVLPMDGFHLYLSQ 166 (254)
Q Consensus 136 -p~~G~~~~----------------------------~~--------------~~~---~---~~g~~i~~~~~~~~~~~ 166 (254)
...|+.+. |. ... + ....++++|||++++..
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 00111000 00 000 1 13556899999987765
Q ss_pred CChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-----------------------------CCCCCCCCChhhhhhH
Q 025366 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (254)
Q Consensus 167 l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------------------------~~~~~~~lS~G~~qrv 217 (254)
+...++......++|.|+.++...+.+.++.|..+ ..+++|.|++...+++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 55555445566788999999999888888877554 4567889999999998
Q ss_pred hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
.-...+...++++|+|+.+..++...|..+.+++|
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D 285 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA 285 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence 87777777789999999989999778888888887
No 108
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.39 E-value=6e-14 Score=116.82 Aligned_cols=133 Identities=9% Similarity=0.039 Sum_probs=77.2
Q ss_pred cccceee-eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (254)
Q Consensus 96 al~~vsl-~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~ 174 (254)
.|+++.. .+++|++++|+||||||||||++.|++... +..| ...++..+ .+.. ...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~-----------~v~~~~~~--------~~~~-~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD-----------PCIYVTTE--------ESRD-SII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC-----------CEEEEESS--------SCHH-HHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC-----------eEEEEEcc--------cCHH-HHH
Confidence 5688887 799999999999999999999999998874 2222 11112221 1111 111
Q ss_pred HHHHHcCCC-CCccHHHHHHHHHhhc--cCCCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCCC--CHHHHHHH
Q 025366 175 EAHARRGAP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDV 247 (254)
Q Consensus 175 ~~~~~~g~~-~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~l--D~~~~~~l 247 (254)
......++. +...... ...++.+. ..........|.++.++...+.+...+|+ +||+|||++++ |+..+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~ 146 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKK-LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI 146 (235)
T ss_dssp HHHHHTTCCCGGGBTTT-EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred HHHHHhcchHHHHhhCC-EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence 112233432 1110000 00000000 00011112348888877776666667999 99999999777 98877777
Q ss_pred HHHhh
Q 025366 248 SSMFD 252 (254)
Q Consensus 248 ~~ll~ 252 (254)
.+.+.
T Consensus 147 ~~~l~ 151 (235)
T 2w0m_A 147 SYYLK 151 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 109
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.36 E-value=1.5e-13 Score=134.84 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=64.8
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
+++|++|+ ++|++++|+||||||||||+|+|+|+... ...|..+ +..... +.+....+.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~v-----pa~~~~-i~~~~~i~~------------ 655 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYV-----PAQKVE-IGPIDRIFT------------ 655 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCB-----SSSEEE-ECCCCEEEE------------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCccc-----chhccc-ceeHHHHHh------------
Confidence 56999999 89999999999999999999999998620 1122100 111111 111000000
Q ss_pred HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHH
Q 025366 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 247 (254)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l 247 (254)
..+.. +++. .....|+.+|++ ++.+...+.+|++||+|||++|+|+.....+
T Consensus 656 ---~~~~~------------d~l~----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 656 ---RVGAA------------DDLA----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp ---EEC---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred ---hCCHH------------HHHH----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 01100 0010 112356777765 4444456789999999999999998655543
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.34 E-value=1.5e-12 Score=116.73 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=32.2
Q ss_pred cccceee-------eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl-------~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.++++.+ .+.+|++++|+||||||||||+++|+|+++
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4566655 677889999999999999999999999996
No 111
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=1.2e-14 Score=129.55 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=54.0
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
.|++++++++++.|+... ++++++|++.+|++++|+|+||||||||+++|+|++. |+.|+
T Consensus 26 ~i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~ 85 (337)
T 2qm8_A 26 AITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHK 85 (337)
T ss_dssp HHHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred HHHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCE
Confidence 466789999999997643 6799999999999999999999999999999999997 78887
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.33 E-value=8.6e-13 Score=118.09 Aligned_cols=121 Identities=19% Similarity=0.166 Sum_probs=78.5
Q ss_pred cccce-eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (254)
Q Consensus 96 al~~v-sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~ 174 (254)
.|+.+ .+.+++|++++|+||||||||||++.|++.... .|+.|- . -|.++.+++.... . .+.+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~-~~~~Gg-------~--~G~vi~i~~e~~~----~-~~~i~ 183 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL-PPEEGG-------L--NGSVIWIDTENTF----R-PERIR 183 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTS-------C--SCEEEEEESSSCC----C-HHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-chhcCC-------C--CCeEEEEeCCCCC----C-HHHHH
Confidence 34554 688999999999999999999999999999730 033320 0 1233455554321 1 12233
Q ss_pred HHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc-------CCCcEEEEeCCCCCCCHH
Q 025366 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~-------~~p~vlIlDEp~~~lD~~ 242 (254)
+.....++. . .++++++.+... ..+.++.+++.++.+++ .+|++||+|||++++|+.
T Consensus 184 ~i~q~~~~~----~---~~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 184 EIAQNRGLD----P---DEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp HHHHTTTCC----H---HHHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred HHHHHcCCC----H---HHHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 333333321 1 155666554321 12578889999988887 689999999999999985
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.32 E-value=4.7e-13 Score=117.64 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+|++++|+||||||||||+++|+|+++ |+.|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~ 132 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKK 132 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCE
Confidence 699999999999999999999999997 66665
No 114
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.31 E-value=7.3e-14 Score=127.82 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=86.0
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC---CCeE
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---PDVA 152 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~---~~~g 152 (254)
.++++++.+.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |+.|. .+.++... +...
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 467788888887633 56887 53 7899999999999999999999999997 88888 44443221 1111
Q ss_pred EEeeCC---CCCC---------CCcC----------CChhhcHHHHHHHcCC-----CCCccHHHHHHHHHhhccCCCCC
Q 025366 153 TVLPMD---GFHL---------YLSQ----------LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVY 205 (254)
Q Consensus 153 ~~i~~~---~~~~---------~~~~----------l~~~e~~~~~~~~~g~-----~~~~~~~~~~~~l~~l~l~~~~~ 205 (254)
. +.+. ++.+ ..++ .++.+.+... ..|. ....+.....+.+..+++.....
T Consensus 214 q-~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~--~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~ 290 (418)
T 1p9r_A 214 Q-TQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS--LTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLI 290 (418)
T ss_dssp E-EECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEECCSSSHHHHHHHHHHTCCHHHH
T ss_pred e-EEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH--HhCCCcccccchhhHHHHHHHHHHcCCcHHHH
Confidence 1 1110 1100 1111 1222222221 1221 01112233444566666654445
Q ss_pred CCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366 206 APSFDHGVGDPVEDDILVGLQHKVVIV 232 (254)
Q Consensus 206 ~~~lS~G~~qrv~ia~al~~~p~vlIl 232 (254)
+..||+||+|| ++++++.+|+++.-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 56899999999 89999999998763
No 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.28 E-value=1.9e-14 Score=122.30 Aligned_cols=133 Identities=12% Similarity=0.003 Sum_probs=73.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCce-ecCCCCCCCCeEEE---eeCCCCCCCCcCCChhhcHHHHHH
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS-SFDSQVKPPDVATV---LPMDGFHLYLSQLDAMEDPKEAHA 178 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~---Gll~~~~p~~G~-~~~~~~~~~~~g~~---i~~~~~~~~~~~l~~~e~~~~~~~ 178 (254)
++++++|+||||||||||+++|+ |+.. ++.|+ .+.+.......+.. +.+.+...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999 8765 77777 33321100111110 111222111 1233343333221
Q ss_pred H--------cCCCCCccHHHHHHHHHhhccC----------------CCCCCCCCChhhhhhHhhhhhh-cCCCcEEEEe
Q 025366 179 R--------RGAPWTFNPLLLLNCLKNLRNQ----------------GSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 233 (254)
Q Consensus 179 ~--------~g~~~~~~~~~~~~~l~~l~l~----------------~~~~~~~lS~G~~qrv~ia~al-~~~p~vlIlD 233 (254)
. .+++.. ......+......+ ....+..+|| |+ +++ +.+|+++++|
T Consensus 101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1 122221 11111111101110 1344556777 44 566 8999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHhh
Q 025366 234 ----GNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 234 ----Ep~~~lD~~~~~~l~~ll~ 252 (254)
||++++|+...+.+.+.+.
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~ 194 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLR 194 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHH
Confidence 9999999988888777664
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.27 E-value=7.4e-13 Score=119.00 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=74.9
Q ss_pred ccceeeeeCC--CeEEEEECCCCCcHHHHHHHHHHhhcccCCCC----ce-ecCCCCCCCCeEEEeeCCCCCCCCcCCCh
Q 025366 97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----AS-SFDSQVKPPDVATVLPMDGFHLYLSQLDA 169 (254)
Q Consensus 97 l~~vsl~i~~--GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~----G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~ 169 (254)
...|+++|.+ |+.++|+||||||||||+++|+|++. |+. |+ .+.++ .++..........
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~-----------~~~~~~~~~~~~~ 223 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEK-----------LGGDEQAMQYSDY 223 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHS-----------SSSCTTSSCTTTH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhh-----------cCCCcccCChhHH
Confidence 3679999999 99999999999999999999999996 666 44 21110 0111110000011
Q ss_pred hhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC----CCCCCCChhhhhhHhhhhhh-cCCCcEEEEeC---CC-----
Q 025366 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY----- 236 (254)
Q Consensus 170 ~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~----~~~~~lS~G~~qrv~ia~al-~~~p~vlIlDE---p~----- 236 (254)
.++.+.. +.. .....++.+++.+... ..+..+++|++++..++.++ ..+|+++++|| |+
T Consensus 224 -~~I~~~~------q~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~ 295 (365)
T 1lw7_A 224 -PQMALGH------QRY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGL 295 (365)
T ss_dssp -HHHHHHH------HHH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------
T ss_pred -HHHHHHH------HHH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCC
Confidence 1111111 000 0111223333322110 01123456677777777765 46899999999 65
Q ss_pred -CCCCHHHHHHHHHHh
Q 025366 237 -LFLDGGVWKDVSSMF 251 (254)
Q Consensus 237 -~~lD~~~~~~l~~ll 251 (254)
+++|+..+..+.+++
T Consensus 296 ~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLL 311 (365)
T ss_dssp -----CCSHHHHHHHH
T ss_pred cCCccHHHHHHHHHHH
Confidence 588999888888877
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.22 E-value=3.4e-11 Score=99.45 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=67.2
Q ss_pred cccceee-eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (254)
Q Consensus 96 al~~vsl-~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~ 174 (254)
.|+.+.. .+++|++++|+||||||||||++.|++ .. .....++..+.. .+. +...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~----------------~~~v~~i~~~~~------~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS----------------GKKVAYVDTEGG------FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH----------------CSEEEEEESSCC------CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc----------------CCcEEEEECCCC------CCH-HHHH
Confidence 4566654 689999999999999999999999999 31 112222333221 121 1122
Q ss_pred HHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhh--hhhHhhhhhhcCC-CcEEEEeCCCCCCCHH
Q 025366 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG 242 (254)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~--~qrv~ia~al~~~-p~vlIlDEp~~~lD~~ 242 (254)
......+. +. .++++++.. ...+.++ +++++.+++++.+ |++||+|||++++|..
T Consensus 64 ~~~~~~~~----~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 64 QMAETRGL----NP---EEALSRFIL------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp HHHHTTTC----CH---HHHHHHEEE------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred HHHHhcCC----Ch---HHHhhcEEE------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 22222222 11 123344322 2334443 5677777888775 9999999999999863
No 118
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.21 E-value=7.7e-13 Score=106.86 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=57.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC----C-
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----A- 182 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g----~- 182 (254)
++++|+|+||||||||+++|+|++. |+ | ...|. |..++..+.. ++....-.......+ +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~-g---------~~~G~-I~~dg~~i~~--~~~~~~d~~r~~~ig~~~~~~ 66 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ER-G---------LRVAV-VKRHAHGDFE--IDKEGKDSWKIYNSGADVVIA 66 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HT-T---------CCEEE-EEC--------------CHHHHHHHHTCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hc-C---------CceEE-EEEcCccccc--CCccchhHHHHHhcCCceEEE
Confidence 5899999999999999999999995 33 0 01454 5555543221 110000011111233 1
Q ss_pred CCCc-------cHH---HHHHHHHh-hccCCCCC-CCCCChhhhhhHhhhhhhcCCCcE
Q 025366 183 PWTF-------NPL---LLLNCLKN-LRNQGSVY-APSFDHGVGDPVEDDILVGLQHKV 229 (254)
Q Consensus 183 ~~~~-------~~~---~~~~~l~~-l~l~~~~~-~~~lS~G~~qrv~ia~al~~~p~v 229 (254)
++.. +.+ .+.++++. +. +.+.. ...||+||+||+++||+++.+|++
T Consensus 67 ~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 67 SPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp CSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred CCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 2110 011 23445554 43 32221 124999999999999999988876
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=2.2e-11 Score=98.22 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=29.2
Q ss_pred eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|.+.+|+.++|.||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677899999999999999999999999984
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.5e-12 Score=119.00 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=83.1
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeE--EEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC--CCCCCC
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS--QVKPPD 150 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~Gei--vgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~--~~~~~~ 150 (254)
..+++.+ ++.|++. . ++++||++++|++ ++|+||||||||||+++|+|+.- .|. .... ......
T Consensus 15 ~~l~~~~-~~~y~~~--~---L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 15 RTVPLAG-HVGFDSL--P---DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQS 83 (427)
T ss_dssp --CCCCC-CC-CC----C---HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEE
T ss_pred ceEEEee-EEEECCe--e---cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEee
Confidence 3466777 8899762 2 5999999999999 99999999999999999999851 121 1000 000011
Q ss_pred eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC----------ccHHHHHHHHHhh-ccC------CCCCC-------
Q 025366 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNL-RNQ------GSVYA------- 206 (254)
Q Consensus 151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~----------~~~~~~~~~l~~l-~l~------~~~~~------- 206 (254)
.+. +.++.... ..+++.+++.+ +.... +....+...++.. +.. .+..+
T Consensus 84 i~~-v~Q~~~l~--~~ltv~D~~~~-----g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI 155 (427)
T 2qag_B 84 NTY-DLQESNVR--LKLTIVSTVGF-----GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFI 155 (427)
T ss_dssp EEE-EEEC--CE--EEEEEEEEECC-----CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEE
T ss_pred EEE-EeecCccc--cccchhhhhhh-----hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEE
Confidence 233 33322111 11444444322 11000 0012223333332 221 11111
Q ss_pred CCCChhhhh-hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 207 PSFDHGVGD-PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 207 ~~lS~G~~q-rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
...++|... -+.++++|..+..||++|+++..|.+.....+.+.+.
T Consensus 156 ~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~ 202 (427)
T 2qag_B 156 APTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKIT 202 (427)
T ss_dssp CCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHH
Confidence 111222221 1678888988999999999999999877777666554
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.18 E-value=4.6e-12 Score=102.77 Aligned_cols=130 Identities=18% Similarity=0.067 Sum_probs=68.4
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--CCCeEEEeeCCCCCCCC--cCCChhhcHHHHH
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--PPDVATVLPMDGFHLYL--SQLDAMEDPKEAH 177 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--~~~~g~~i~~~~~~~~~--~~l~~~e~~~~~~ 177 (254)
.+++|++++|+||||||||||+++|+|. ++.|. .++++.. ....+. ..++.... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGR---IDPWLPQSHQQNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSC---CCTTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhccc---ccCCccchhhhhHHHHHHHHHHH
Confidence 4778999999999999999999999996 44554 3333211 000000 00110000 0012222222211
Q ss_pred HH---cCC---CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366 178 AR---RGA---PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 178 ~~---~g~---~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll 251 (254)
.. .+. .+..........+.. ....+..+|+|++|++.++|++..+|+++ +|+...+.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 GRYAKEGYFVILDGVVRPDWLPAFTA----LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HHHHHTSCEEEECSCCCTTTTHHHHT----TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred HHHhccCCeEEEeccCcHHHHHHHHh----cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 10 010 000000000000110 02234578999999999999999888765 5887777777766
Q ss_pred h
Q 025366 252 D 252 (254)
Q Consensus 252 ~ 252 (254)
+
T Consensus 145 ~ 145 (191)
T 1zp6_A 145 A 145 (191)
T ss_dssp T
T ss_pred h
Confidence 4
No 122
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.17 E-value=2.4e-11 Score=106.30 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=79.8
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~ 157 (254)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++++. +..| ...++..
T Consensus 77 ~~~~~l~~~~~~~~------~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~-----------~v~l~~~ 134 (295)
T 1ls1_A 77 TVYEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGR-----------RPLLVAA 134 (295)
T ss_dssp HHHHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTC-----------CEEEEEC
T ss_pred HHHHHHHHHHCCCC------ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC-----------eEEEecC
Confidence 45677888886521 678888 899999999999999999999999985 2222 1111222
Q ss_pred CCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC-C
Q 025366 158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-Y 236 (254)
Q Consensus 158 ~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp-~ 236 (254)
+... +... ..+..+.+..++.........+-.+-+|.+++.+...++|++|+|+| +
T Consensus 135 ---d~~~---~~~~-----------------~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 135 ---DTQR---PAAR-----------------EQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR 191 (295)
T ss_dssp ---CSSC---HHHH-----------------HHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred ---Cccc---HhHH-----------------HHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 2211 1000 00011222223221100011223344577777776689999999998 9
Q ss_pred CCCCHHHHHHHHHHhh
Q 025366 237 LFLDGGVWKDVSSMFD 252 (254)
Q Consensus 237 ~~lD~~~~~~l~~ll~ 252 (254)
.++|.....++.++.+
T Consensus 192 ~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 192 LQIDEPLMGELARLKE 207 (295)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhh
Confidence 9999987777766543
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.17 E-value=1.6e-11 Score=110.24 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=46.3
Q ss_pred EEecceee---cccccceec-------cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 79 ~i~~l~~~---y~~~~~~vl-------al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+++++++. |+.....++ ++++++|.+++|++++|+||||||||||+++|+|+++ |+.|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~ 205 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRL 205 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceE
Confidence 56677777 753212222 3499999999999999999999999999999999996 55554
No 124
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.17 E-value=1.5e-11 Score=96.87 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCCCCCCChhhhhhHhhh------hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia------~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+.++..|||||+||+++| ++++.+|+++|+||||++||+..+..+.+++.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 108 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 108 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 456789999999999876 789999999999999999999999999988753
No 125
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.14 E-value=4.1e-11 Score=111.17 Aligned_cols=46 Identities=28% Similarity=0.309 Sum_probs=42.5
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ 145 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~ 145 (254)
+++++||++++ ++++|+||||||||||+++|+|+++ |++|+ .++|.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~ 65 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNT 65 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCE
Confidence 77999999999 9999999999999999999999997 99999 56653
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.14 E-value=5.6e-11 Score=107.15 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=30.4
Q ss_pred ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++++ +++|++++|+||||||||||+++|+|+++
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45554 78999999999999999999999999995
No 127
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.12 E-value=5.3e-11 Score=99.73 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.1
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-..++|++++|+||||||||||+++|+|+++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4578999999999999999999999999984
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=1.1e-10 Score=91.99 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=25.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|+.++|+||||+|||||+++|++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999984
No 129
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.06 E-value=1.5e-10 Score=101.71 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=65.9
Q ss_pred ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHH
Q 025366 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (254)
Q Consensus 99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~ 178 (254)
.+++...+|++++|+|+|||||||+++.|++.+. +..| ...++..|.+ +. ..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~-----------kV~lv~~D~~---r~--~a--------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-----------SVVLAAADTF---RA--AA--------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-----------CEEEEEECTT---CH--HH---------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC-----------EEEEEccccc---cH--HH---------
Confidence 3566678899999999999999999999999995 3222 1122222221 10 00
Q ss_pred HcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhH---hhhhhhcCCCcEEEEeCCCC
Q 025366 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 179 ~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv---~ia~al~~~p~vlIlDEp~~ 237 (254)
.+.+..+.+.+++.. ++..|+|+.+++ ++++++..+++++|+|+|..
T Consensus 148 ---------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ---------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011222333333321 346688999998 78888999999999999875
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.06 E-value=1.6e-11 Score=109.99 Aligned_cols=112 Identities=16% Similarity=0.058 Sum_probs=63.4
Q ss_pred ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC-CCC----CCCCeEEEeeCCCCCCCCcCCChh
Q 025366 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQV----KPPDVATVLPMDGFHLYLSQLDAM 170 (254)
Q Consensus 97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~-~~~----~~~~~g~~i~~~~~~~~~~~l~~~ 170 (254)
++++++.+ +|++++|+||||||||||+++|+|+... |..|+ ... |.. .....+. +.+++..+.. .++.
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l~dt--pgv~ 279 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYH-FPHGGDVIDS--PGVR 279 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEE-CTTSCEEEEC--HHHH
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEE-ECCCCEecCc--ccHH
Confidence 35566654 6999999999999999999999998731 67787 332 311 1112222 3333322111 1111
Q ss_pred hcHHHHHHHcCCCCCccH----HHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366 171 EDPKEAHARRGAPWTFNP----LLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG 224 (254)
Q Consensus 171 e~~~~~~~~~g~~~~~~~----~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~ 224 (254)
+ +++. .... ..+.++++.+++. .+..+..+| |++||+++|.+++
T Consensus 280 e--------~~l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 E--------FGLW-HLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp T--------CCCC-CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred H--------hhhc-CCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 1 2221 1111 2234455555554 456777899 9999999998764
No 131
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.05 E-value=6.9e-13 Score=121.23 Aligned_cols=126 Identities=20% Similarity=0.155 Sum_probs=74.7
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCC-CCCCCcCCChhhcHHH-
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKE- 175 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~-~~~~~~~l~~~e~~~~- 175 (254)
++++|+++.+++++|+|+||||||||+++|++.. |..+.. ......+..|. +.+++ ..+ .+.+.+-.
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~-~ftTl~p~~G~-V~~~~~~~~-----~l~DtpGli 216 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPY-PFTTLSPNLGV-VEVSEEERF-----TLADIPGII 216 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCC-TTCSSCCEEEE-EECSSSCEE-----EEEECCCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCc-ccceecceeeE-EEecCcceE-----EEEeccccc
Confidence 5899999999999999999999999999999985 211110 00011344454 44443 111 11111000
Q ss_pred --HHHHcCCCCCccHHHHHHHHHh-------hccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHH
Q 025366 176 --AHARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 244 (254)
Q Consensus 176 --~~~~~g~~~~~~~~~~~~~l~~-------l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~ 244 (254)
.....++. ..+...++. +.+. ...+.+||+|++|++.++++++..|.+|++ +.+|....
T Consensus 217 ~~a~~~~~L~-----~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 217 EGASEGKGLG-----LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp CCGGGSCCSC-----HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred cchhhhhhhh-----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 00000110 111111111 1222 334457899999999999999999999999 88887654
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=5.8e-12 Score=111.76 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~ 182 (254)
..++|++++|+||||||||||++.|+|+++ |+.|+ +.+.+.+.++ ....+.........++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~--------------V~l~g~D~~r--~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFS--------------VVIAASDTFR--AGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC--------------EEEEEECCSS--TTHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCE--------------EEEEeecccc--cchHHHHHHHHHHcCc
Confidence 447899999999999999999999999996 65553 2222222222 1233333333444452
Q ss_pred ---CCCccHHHHHHHHHhhccC----CCCC----CC--C-CChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366 183 ---PWTFNPLLLLNCLKNLRNQ----GSVY----AP--S-FDHGVGDPVEDDILVGLQHKVVIVDGNYL 237 (254)
Q Consensus 183 ---~~~~~~~~~~~~l~~l~l~----~~~~----~~--~-lS~G~~qrv~ia~al~~~p~vlIlDEp~~ 237 (254)
++.....+...+.+++... .+.. .. . -..-+.+-..+++++..++.++++|.++.
T Consensus 186 ~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 186 KVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred eEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 2332223333344433221 1100 00 0 11122333447788888888899996665
No 133
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.04 E-value=4.3e-12 Score=112.68 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=44.4
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCC-------eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~G-------eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++.+++++.|+... +++++++.++.| +.++|.||||+|||||+++|++.+
T Consensus 17 ~~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 17 QFLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CTTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3466778888898743 569999998876 899999999999999999999998
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.99 E-value=1.4e-10 Score=107.61 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=36.2
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+++||++++|++++|+|+||||||||+++|+|++. ++.|+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~ 323 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKS 323 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCe
Confidence 68999999999999999999999999999999996 55554
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.96 E-value=3e-11 Score=104.47 Aligned_cols=133 Identities=17% Similarity=0.083 Sum_probs=75.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCCh-hhcHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA-MEDPK 174 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~-~e~~~ 174 (254)
+++++++.+++| ++|.||||||||||+++|+|... + +. +.+++..+....... ...+.
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----------------~--~~-i~i~g~~l~~~~~~~~~~~i~ 93 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----------------L--NF-ISVKGPELLNMYVGESERAVR 93 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----------------C--EE-EEEETTTTCSSTTHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----------------C--CE-EEEEcHHHHhhhhhHHHHHHH
Confidence 569999999999 99999999999999999999984 2 22 445554332210000 01111
Q ss_pred HHHHH--cCCC-----CCccH---HHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC-------
Q 025366 175 EAHAR--RGAP-----WTFNP---LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL------- 237 (254)
Q Consensus 175 ~~~~~--~g~~-----~~~~~---~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~------- 237 (254)
..... ...+ +..+. .+-....+...-..+..+..|||||+||+.+++++..+|++| |+++.
T Consensus 94 ~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 94 QVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp HHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred HHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 11110 0000 00000 000000000000001123468999999999999999999975 88753
Q ss_pred -----CCCHHHHHHHHHHh
Q 025366 238 -----FLDGGVWKDVSSMF 251 (254)
Q Consensus 238 -----~lD~~~~~~l~~ll 251 (254)
.-|...+.+|++.+
T Consensus 172 ~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEECCSCCHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 34677777777655
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.96 E-value=3.1e-09 Score=88.85 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=60.8
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~ 180 (254)
.+++|++++|+||||||||||++.|++. ++ ++.| ....+. +.+++.... .. +........+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g--------~~~~~~-~~i~~~~~~----~~-~~~~~~~~~~ 82 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRG--------GGEGKA-MYIDTEGTF----RP-ERLLAVAERY 82 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGT--------CCSSEE-EEEESSSCC----CH-HHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcC--------CCCCeE-EEEECCCCc----CH-HHHHHHHHHc
Confidence 4789999999999999999999999994 32 1111 012233 444443211 11 2222223344
Q ss_pred CCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhh-Hhhhhhh--cCCCcEEEEeCCCCCCCHH
Q 025366 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP-VEDDILV--GLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr-v~ia~al--~~~p~vlIlDEp~~~lD~~ 242 (254)
++. . .++++++.+. ..++..+... +..+..+ ..+|++||+|||+..+|..
T Consensus 83 g~~----~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 83 GLS----G---SDVLDNVAYA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp TCC----H---HHHHHTEEEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred CCC----H---HHHhhCeEEE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 432 1 1244544332 2344443322 2222222 3589999999999999874
No 137
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.95 E-value=6.1e-10 Score=89.91 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=45.0
Q ss_pred CCCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 203 ~~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
...+..||||||||+++|++++ .+|+++|||||+++||+.+...+.+++.+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~ 113 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE 113 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHH
Confidence 3456789999999999999996 45799999999999999999999998853
No 138
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.95 E-value=2.8e-10 Score=99.74 Aligned_cols=115 Identities=15% Similarity=0.008 Sum_probs=69.0
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ec---CCCCCC--------CCeEEEeeCCCCCCCC--cCC
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQVKP--------PDVATVLPMDGFHLYL--SQL 167 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~---~~~~~~--------~~~g~~i~~~~~~~~~--~~l 167 (254)
+++..|++++|+||||||||||+|+|+ ++. |+.|+ .+ .|.... +..|.++...++.... ..+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 355679999999999999999999999 886 99999 44 443211 1345533333332111 235
Q ss_pred ChhhcH--HHH----H--HHcCC-CCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhh
Q 025366 168 DAMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDI 221 (254)
Q Consensus 168 ~~~e~~--~~~----~--~~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~ 221 (254)
++ +++ .+. . ...+. ........+.++++.+++.. +.++..||+..++++++|+
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55 444 111 0 11221 22233456788899888863 4566788887777777765
No 139
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.94 E-value=9.5e-10 Score=108.90 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=70.2
Q ss_pred eeCCCCCCC-CcCCChhhcHHHHHHHcCCCCCc----------cHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhh
Q 025366 155 LPMDGFHLY-LSQLDAMEDPKEAHARRGAPWTF----------NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 220 (254)
Q Consensus 155 i~~~~~~~~-~~~l~~~e~~~~~~~~~g~~~~~----------~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia 220 (254)
+.+.|..+. ...+++.+++.+. ...+++... ...+ .+.+..+++. .+..+.+|||||+||++||
T Consensus 439 v~~~g~~i~q~~~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~R-l~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA 516 (972)
T 2r6f_A 439 VLVGGKHIGEVTAMSVTEALAFF-DGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLA 516 (972)
T ss_dssp EESSSCBHHHHHTSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHH-HHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHH
T ss_pred eEECCCcHHHHhhCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH-HHHhhhCCCCccccCCccccCCHHHHHHHHHH
Confidence 445554432 1236778888874 455543310 1122 2457777875 4778899999999999999
Q ss_pred hhhcCC--CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 221 ILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 221 ~al~~~--p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++|..+ |++|||||||++||+...+.+.++|++
T Consensus 517 ~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~ 551 (972)
T 2r6f_A 517 TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 551 (972)
T ss_dssp HHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 999887 499999999999999999999988753
No 140
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.94 E-value=1.2e-10 Score=99.58 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=35.6
Q ss_pred ceEEEecc-eeec-ccccceeccccceeeeeCC---CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 76 ~~l~i~~l-~~~y-~~~~~~vlal~~vsl~i~~---GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++++++|| ++.| +... +|+++||++.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999 9999 4422 67999999999 99999999999999999999999774
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.93 E-value=3.3e-10 Score=94.99 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=22.9
Q ss_pred ccceeeeeCCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 025366 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI 131 (254)
Q Consensus 97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~-Gll 131 (254)
..++||++++|++++|+||||||||||+++|+ |++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 38999999999999999999999999999999 997
No 142
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.92 E-value=1.1e-09 Score=108.58 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred HHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..+.+..+++. .+..+.+|||||+||++||++|+.+|+ +|||||||++||+...+.+.++|++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~ 511 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKK 511 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHH
Confidence 34566677775 467888999999999999999998777 9999999999999999999998864
No 143
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=1.5e-09 Score=88.73 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.3
Q ss_pred eeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4677899999999999999999999999997
No 144
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.82 E-value=2.5e-09 Score=102.04 Aligned_cols=158 Identities=17% Similarity=0.198 Sum_probs=89.7
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ce-ecCCCCC---CCCeEEE
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQVK---PPDVATV 154 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~-~~~~~~~---~~~~g~~ 154 (254)
-+++...|+... +++++++.+..|+.++|+||||+|||||+++|++++. +.. |. .+.++.. .+..+.
T Consensus 37 p~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~- 108 (604)
T 3k1j_A 37 EKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKT- 108 (604)
T ss_dssp SSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEE-
T ss_pred ccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEE-
Confidence 346667777643 6699999999999999999999999999999999985 433 22 2222111 111111
Q ss_pred eeCCCCCCCCcCCChhhcHHHHHHH-cC-----------------------C-CCCc---cHHHHHHHHHhhccCCCCCC
Q 025366 155 LPMDGFHLYLSQLDAMEDPKEAHAR-RG-----------------------A-PWTF---NPLLLLNCLKNLRNQGSVYA 206 (254)
Q Consensus 155 i~~~~~~~~~~~l~~~e~~~~~~~~-~g-----------------------~-~~~~---~~~~~~~~l~~l~l~~~~~~ 206 (254)
++.... ....+........ .. . .... .......++..+.. .....
T Consensus 109 ~p~g~~------~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~-~~~~~ 181 (604)
T 3k1j_A 109 VPACQG------RRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH-DPFQS 181 (604)
T ss_dssp EETTHH------HHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC-CCC--
T ss_pred EecchH------HHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe-chhhc
Confidence 111000 0000000000000 00 0 0000 00001111111111 11222
Q ss_pred CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 207 ~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
..+++|++|++..+.....++.+|++||... |++..|..+.+++++
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 5688899999988888888999999999888 689999999998864
No 145
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.79 E-value=6.8e-09 Score=90.69 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|++++|+|+||+||||++..|++.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999999985
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.1e-08 Score=90.53 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.0
Q ss_pred hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..+++|+|+|||+. ||+..+..+.+++++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 567899999999999 999999999998864
No 147
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.78 E-value=6.9e-09 Score=103.06 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=52.6
Q ss_pred HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC--CcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~--p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+.+..+++. .+..+.+|||||+||++||++|..+ |++|||||||++||+...+.+.++++
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~ 567 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLT 567 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHH
Confidence 346667765 5778899999999999999999988 59999999999999999999998875
No 148
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.76 E-value=7.9e-09 Score=101.65 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=52.7
Q ss_pred HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
+.+..+++. .+..+..|||||+||++||++|+.+| +++||||||++||+...+.+.++++
T Consensus 361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~ 425 (842)
T 2vf7_A 361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALE 425 (842)
T ss_dssp HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHH
T ss_pred HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHH
Confidence 356667765 46788899999999999999999998 4999999999999999999999875
No 149
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.75 E-value=1.3e-08 Score=92.47 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=60.6
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHH--HhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~--Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~ 180 (254)
-+++|++++|+||||||||||++.|+ ++++ ++.| ... +.++.+++.... . .+.+......+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G--------g~~-~~viyid~E~~~----~-~~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG--------GGE-GKCLYIDTEGTF----R-PVRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT--------CCS-SEEEEEESSSCC----C-HHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC--------CCC-CcEEEEeCCCcc----C-HHHHHHHHHHc
Confidence 58899999999999999999999654 4442 2222 011 122445543211 1 12223334455
Q ss_pred CCCCCccHHHHHHHHHhhccCCCCCCCCCCh-hhhhhHhhhhhh--cCCCcEEEEeCCCCCCCHH
Q 025366 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GVGDPVEDDILV--GLQHKVVIVDGNYLFLDGG 242 (254)
Q Consensus 181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~-G~~qrv~ia~al--~~~p~vlIlDEp~~~lD~~ 242 (254)
++. ..++++++.+.. .++. .+.+.+..+..+ ..+|++||+|+|++.+|..
T Consensus 237 gl~-------~~~vleni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 237 GLD-------PDDALNNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp TCC-------HHHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred CCC-------hHhHhhcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 542 124555554422 1222 222333322222 3579999999999999864
No 150
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.69 E-value=1e-08 Score=96.06 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=44.7
Q ss_pred CCCCC-ChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 205 ~~~~l-S~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
++..| ||||+||+++|++++.+| ++||+|||+++||+.....+.++|.+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~ 444 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR 444 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 34567 999999999999999999 99999999999999999999988853
No 151
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=9.3e-10 Score=92.62 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=40.4
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~ 144 (254)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++. |++|. .+++
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC----
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECC
Confidence 5788888766532 344555 8999999999999999999999997 99998 4544
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.66 E-value=3.1e-08 Score=79.44 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=34.3
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+++++++.+| +.+|+||||||||||+++|.+++. +..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence 6788889888 999999999999999999999985 65554
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.66 E-value=8.2e-09 Score=84.53 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=35.6
Q ss_pred ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|+++.++... +.+.+++..++|++++|+|||||||||++++|++.+
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35666665533 557888889999999999999999999999999998
No 154
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.62 E-value=4.2e-08 Score=80.48 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=28.2
Q ss_pred eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 100 vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+--.+.+|.+++|+|++||||||+++.|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 33457789999999999999999999999976
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.62 E-value=2.3e-08 Score=81.06 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=32.4
Q ss_pred hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.+.+.+|++++.+|+++++| ++++|....+++.+.+.+
T Consensus 151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 34567889999999999999 999999999999887753
No 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.61 E-value=1e-08 Score=84.14 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=27.7
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..++|++++|+|+||||||||+++|++++.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999984
No 157
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=2.3e-09 Score=97.14 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=25.9
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.+..|..+||+|+||+|||||+++|+|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999999993
No 158
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.59 E-value=7.5e-09 Score=96.90 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=41.4
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS 144 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~ 144 (254)
+++++++.+++|++++|+||||||||||+++|+|+++ |+.|. .+.+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied 295 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIED 295 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEES
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcC
Confidence 5689999999999999999999999999999999997 88888 4544
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.8e-08 Score=81.21 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=25.7
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++|+||++.+|++++|+|++||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999999999999999998873
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=3.1e-08 Score=80.77 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=26.8
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++.+|++++|+|||||||||++++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3578999999999999999999999999984
No 161
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.57 E-value=2.3e-08 Score=81.95 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++|++++|+||||||||||+++|+|++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999999999998
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.55 E-value=2.9e-08 Score=80.37 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999984
No 163
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.47 E-value=1e-07 Score=87.23 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=42.6
Q ss_pred CCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 208 ~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
.||+||+|++++|++++ .+|+++|||||+++||+..+..+.+++.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 382 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR 382 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 48999999999999998 58999999999999999999999998853
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.47 E-value=9.1e-08 Score=77.74 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=29.4
Q ss_pred hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (254)
Q Consensus 216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~ 252 (254)
....|++++.+++++++| ++++|....+++.+.+.
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 345678888899999999 99999999888887764
No 165
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.46 E-value=3.9e-08 Score=85.89 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=30.6
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ec
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF 142 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~ 142 (254)
|++..|++++|+||||||||||+|+|+|+.. |+.|+ .+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceec
Confidence 4566799999999999999999999999997 99998 44
No 166
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.45 E-value=1.3e-07 Score=85.00 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=42.3
Q ss_pred CCCCChhhhhhH------hhhhhhcCC-CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 206 APSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 206 ~~~lS~G~~qrv------~ia~al~~~-p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
+..+|+||+||+ ++|+++..+ |++||||||+++||+..+..+.+++.+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~ 332 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 457999999988 456788889 999999999999999999999998853
No 167
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.44 E-value=1.1e-07 Score=76.53 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|++++|+||||||||||+++|++.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999987
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.42 E-value=1.3e-07 Score=77.19 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=25.2
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+..++|++++|+|+||||||||+++|++.+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999999987
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.39 E-value=8e-07 Score=81.87 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=70.9
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
.|+++...+++|+++.|.|++|+|||||+..|++... +..| ....++... ++..+....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E--------~s~~~l~~r 250 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLE--------MSAQQLVMR 250 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESS--------SCHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECC--------CCHHHHHHH
Confidence 5678877899999999999999999999999998773 1111 112223222 222221111
Q ss_pred H-HHHcCC---------CCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 176 A-HARRGA---------PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 176 ~-~~~~g~---------~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD 240 (254)
. ....++ ....+...+.+.++.+.... -...+.+|.++.+..+....-..++++||+|++....+
T Consensus 251 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 251 MLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 1 111222 11122233444444443221 11235678887764433322236899999999998875
No 170
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.39 E-value=9.4e-07 Score=73.68 Aligned_cols=36 Identities=19% Similarity=0.484 Sum_probs=28.0
Q ss_pred cccce-eeeeCCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 025366 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI 131 (254)
Q Consensus 96 al~~v-sl~i~~GeivgLiGpNGsGKSTLlk~L~-Gll 131 (254)
.|+.+ .--+++|++++|+||||||||||+..++ +..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555 5568999999999999999999965554 444
No 171
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=3.7e-08 Score=83.36 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=40.9
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++++.+.|+... +++++++.+++| ++|.||||+|||||+++|++..
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 45667777786532 569999999999 8999999999999999999987
No 172
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.38 E-value=4.4e-07 Score=84.16 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=30.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.++++.+++| +.|.||+|+|||||++.|++...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 347777888777 78999999999999999999873
No 173
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.37 E-value=4.5e-08 Score=84.17 Aligned_cols=48 Identities=27% Similarity=0.375 Sum_probs=41.0
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++++.+.|+... +++++++.+++| ++|+||||+|||||+++|++.+
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 35567788886533 569999999999 8999999999999999999987
No 174
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.36 E-value=1.4e-07 Score=85.10 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=34.4
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++++++.+++|++++|+||||||||||+++|+|..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 669999999999999999999999999999999976
No 175
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.30 E-value=2.9e-07 Score=74.21 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
|++++|+||||||||||+++|++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999999998743
No 176
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.30 E-value=6.1e-08 Score=85.00 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=26.9
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+++.+|++++|+||||+|||||+|+|+|+.. |..|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~ 203 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNE 203 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccc
Confidence 7788999999999999999999999999987 88898
No 177
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.30 E-value=3.7e-07 Score=75.14 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999984
No 178
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.26 E-value=7.3e-07 Score=81.46 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=38.0
Q ss_pred eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-|+++|+ +.|++. . .+++.+|++++|+||||||||||+++|++++.
T Consensus 6 ~l~~~~~-~~~~~~-------~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 6 GLELSNF-KSYRGV-------T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEEESC-SSCCSE-------E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEeCE-EEECCc-------e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4788899 788651 1 24467799999999999999999999999985
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.25 E-value=6.3e-07 Score=71.24 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 469999999999999999999999986
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.24 E-value=7.5e-08 Score=85.56 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=47.5
Q ss_pred CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.+++.+++.+.|+... +++++++.+.++.+++|+|+||+|||||++.|++.+.
T Consensus 27 ~i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 27 AMTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 355678888888887643 5689999999999999999999999999999999985
No 181
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.24 E-value=2.7e-07 Score=78.44 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCce
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS 140 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~---Gll~~~~p~~G~ 140 (254)
.+|++++|+|||||||||++++|+ |+.. ++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~ 60 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGA 60 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCc
Confidence 679999999999999999999999 7664 78887
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.23 E-value=3e-07 Score=76.95 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=27.1
Q ss_pred eeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
+...++|++++|.|+||||||||+++|+++
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345678999999999999999999999987
No 183
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.21 E-value=1.4e-07 Score=88.10 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=27.8
Q ss_pred ceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
.+.+++.++..+.|+|.+||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888899999999999999999998875
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.19 E-value=6.9e-07 Score=70.70 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.|++++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999874
No 185
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.19 E-value=1.7e-06 Score=73.27 Aligned_cols=120 Identities=24% Similarity=0.408 Sum_probs=65.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC----
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---- 181 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g---- 181 (254)
...+|+|.|+.||||||+.+.|+..+.. + .++ . ......++..|+++.. +.. .... ....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~----~~d-~--~~~~~~~i~~D~~~~~---~~~-~~~~--~~~~g~~~f 85 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N----EVD-Y--RQKQVVILSQDSFYRV---LTS-EQKA--KALKGQFNF 85 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG--G----GSC-G--GGCSEEEEEGGGGBCC---CCH-HHHH--HHHTTCSCT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh--h----ccc-c--cCCceEEEecCccccc---cCh-hhhh--hhccCCCCC
Confidence 3468999999999999999999986630 0 000 0 0011224677776432 221 1111 11222
Q ss_pred -CCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366 182 -APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (254)
Q Consensus 182 -~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~ 241 (254)
.+..++...+.+.++.+..+.....+.|+.....++.-... ....+++|+|+++...++
T Consensus 86 ~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~ 145 (252)
T 1uj2_A 86 DHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ 145 (252)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH
T ss_pred CCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH
Confidence 23445556667777776544444444444333333211111 235689999998876564
No 186
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.16 E-value=1.1e-05 Score=73.71 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=25.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.+++++|+||+||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999985
No 187
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.15 E-value=1.2e-06 Score=71.91 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=26.2
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+...+|++++|+||||||||||++.|.+..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 445579999999999999999999999987
No 188
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.15 E-value=1e-06 Score=77.60 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=33.2
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++|.+++|++++|+|+||+||||++..|++.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999995
No 189
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.13 E-value=4.5e-06 Score=74.39 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.9
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-+++|+++.|.||||+|||||+..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999988888665
No 190
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.10 E-value=1e-06 Score=77.47 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=29.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcc-----cCCCCce-ecCC
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKAS-SFDS 144 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~~-----~~p~~G~-~~~~ 144 (254)
-++++|+|+||||||||+|.|.|+... +.|+.|+ .++|
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg 47 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD 47 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccH
Confidence 368999999999999999999998510 0167777 4444
No 191
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.09 E-value=1e-06 Score=83.05 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=31.0
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (254)
.+++|++++|+|+||||||||+++|++++. |+.|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence 578999999999999999999999999996 6665
No 192
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=2.9e-05 Score=68.79 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~Ge--ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999984
No 193
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.04 E-value=1.3e-05 Score=73.28 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=37.8
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.++|++.|+... .+++|. ++++++++|+|||||||++..|++.+.
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346778887632 577787 899999999999999999999999995
No 194
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.01 E-value=4.4e-06 Score=65.29 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=25.3
Q ss_pred ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+..+++.+ .+.+|+|||||||||++..|.-.+
T Consensus 16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34445554 489999999999999999998655
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.98 E-value=2.8e-05 Score=66.86 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++..+.|.||+|+|||||++.|++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999987
No 196
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.98 E-value=2.6e-06 Score=76.68 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=46.1
Q ss_pred eEEEecceeecccccceecccc--------------ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 77 ~l~i~~l~~~y~~~~~~vlal~--------------~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.++||+..|... +. .++ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~e--r~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANS--RL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCS--BC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCC--cc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 57889999999873 22 446 8999999999999999999999999999999874
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.97 E-value=1.6e-06 Score=81.66 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=41.3
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+-++++.+.|.... ++.++++++ +|++++|+||||+|||||+++|++.+.
T Consensus 84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 33456777775532 668888888 799999999999999999999999985
No 198
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.97 E-value=7.1e-06 Score=80.40 Aligned_cols=45 Identities=9% Similarity=-0.090 Sum_probs=36.1
Q ss_pred CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC-CCCHHHHHHHH
Q 025366 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDVS 248 (254)
Q Consensus 204 ~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~-~lD~~~~~~l~ 248 (254)
..+-..+.|+.+|..++..++.++++||+||++. ++|......+.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l 231 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLL 231 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHH
Confidence 3445678999999999998999999999999996 88866544433
No 199
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.96 E-value=6.6e-06 Score=71.37 Aligned_cols=115 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH---HHHH----
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK---EAHA---- 178 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~---~~~~---- 178 (254)
++.+|||.|++||||||+.+.|...+.. ......++..|+++.. +..+... ....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--------------~~~~~~vI~~D~~~r~----~~~~~~~~~~~~~~~g~~ 65 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRF----NRADMKAELDRRYAAGDA 65 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSC----CHHHHHHHHHHHHHHTCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeeEeecchhhcC----CHHHhhhhhhhhhhccCc
Confidence 4568999999999999999999986520 0111345788887632 1111110 0011
Q ss_pred HcCC--CCCccHHHHHHHHHhhccCCCCCCCCCChh---------hhhhHhhhhhhcCCCcEEEEeCCCCC
Q 025366 179 RRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG---------VGDPVEDDILVGLQHKVVIVDGNYLF 238 (254)
Q Consensus 179 ~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G---------~~qrv~ia~al~~~p~vlIlDEp~~~ 238 (254)
.+.. ++.++...+.+.+..+..+.....+.|.++ ......-...+....+++|+|+++.+
T Consensus 66 ~~~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~ 136 (290)
T 1a7j_A 66 TFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGA 136 (290)
T ss_dssp TCSTTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTT
T ss_pred CcCCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccc
Confidence 1222 334445555566665544333333444221 01111000122235789999999987
No 200
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.95 E-value=5.5e-06 Score=69.36 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.1
Q ss_pred ccceeeeeC---CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 97 l~~vsl~i~---~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|.++++.+. +|.++.|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 466666665 899999999999999999999999984
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.94 E-value=4.9e-06 Score=68.64 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
+.+++|+|++||||||++++|++.+.-..++.|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 5689999999999999999999987322256666
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=6.5e-06 Score=65.63 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|++++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999874
No 203
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.92 E-value=1.3e-05 Score=71.04 Aligned_cols=106 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~ 175 (254)
.|+.+.--+.+|+++.|.|++|+|||||+..++.... .. .....++... ++..+....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a----~~----------g~~Vl~fSlE--------ms~~ql~~R 92 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL----ND----------DRGVAVFSLE--------MSAEQLALR 92 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH----HT----------TCEEEEEESS--------SCHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----Hc----------CCeEEEEeCC--------CCHHHHHHH
Confidence 3455555789999999999999999999988887763 01 1112222221 333322222
Q ss_pred HHH-HcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366 176 AHA-RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (254)
Q Consensus 176 ~~~-~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD 240 (254)
... ..++ +...+. -..||.++.+|+..|...+.+++++|.|+|...++
T Consensus 93 lls~~~~v----~~~~l~-------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 93 ALSDLTSI----NMHDLE-------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHCC----CHHHHH-------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHhhCC----CHHHHh-------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 111 1111 111111 13688999999998888888889999999876554
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.85 E-value=6.9e-06 Score=66.95 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHH
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~G 129 (254)
.+++|+|+|||||||++++|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999998
No 205
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.82 E-value=1.1e-05 Score=64.80 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.8
Q ss_pred ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
++|+...++.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999987
No 206
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.81 E-value=7.3e-06 Score=76.64 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=32.0
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++++|++.+| +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 447889999999 99999999999999999999886
No 207
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.81 E-value=5.6e-06 Score=72.15 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred Eecceeecccccceeccccc-eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~-vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++.+.|+... .+ ++++.+ +++++++|+||+||||++..|++.+.
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456777887632 46 788876 99999999999999999999999984
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=3.5e-06 Score=74.32 Aligned_cols=47 Identities=28% Similarity=0.492 Sum_probs=39.3
Q ss_pred cceeecccccceeccccceeeeeCCCeE--EEEECCCCCcHHHHHHHHHHhhc
Q 025366 82 CMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 82 ~l~~~y~~~~~~vlal~~vsl~i~~Gei--vgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++...|+... +++.++..++.|++ +.|.||+|+||||+++++++.+.
T Consensus 23 ~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 23 TLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4555666533 55888899999998 99999999999999999999875
No 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.79 E-value=1.1e-05 Score=65.78 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
...+|.+++|+||+|||||||++.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35679999999999999999999999876
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.77 E-value=1.2e-05 Score=65.32 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHH
Q 025366 109 IVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~G 129 (254)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=4.5e-05 Score=68.06 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.6
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999999999874
No 212
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.75 E-value=2.7e-05 Score=69.68 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++|+|++|||||||++.|+|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999876
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.74 E-value=4.9e-05 Score=65.55 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=23.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+.|.||+|+||||+++.|++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999999984
No 214
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.73 E-value=6.2e-06 Score=76.83 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=39.7
Q ss_pred EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++++.+.|.... ++.++++.+++| +.|.||||+|||||+++|++...
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34556666665532 568999999988 89999999999999999999873
No 215
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.72 E-value=2.4e-05 Score=62.71 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=27.7
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+...+|.++.|.|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4456799999999999999999999999884
No 216
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.71 E-value=6.4e-05 Score=66.85 Aligned_cols=46 Identities=4% Similarity=-0.232 Sum_probs=31.8
Q ss_pred CCCCCChhhhhhHhhhhhhcCCCcEEEEe-CCCCCCCHHHHHHHHHHh
Q 025366 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVD-GNYLFLDGGVWKDVSSMF 251 (254)
Q Consensus 205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlD-Ep~~~lD~~~~~~l~~ll 251 (254)
....++.++++.+. +.+...++-++++| ++..++|......+.+.+
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i 274 (357)
T 2e87_A 228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274 (357)
T ss_dssp CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH
Confidence 34467788887775 44445567788899 888888877666655544
No 217
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.70 E-value=2.7e-05 Score=63.82 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=25.9
Q ss_pred ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+..+.+.+ .+.+|+|||||||||++.+|.-.+-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34455554 5899999999999999999976653
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.70 E-value=1.9e-05 Score=64.70 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=28.3
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+.+.+|.++.|.|++||||||+++.|++.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5577899999999999999999999999884
No 219
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.68 E-value=2.1e-05 Score=69.95 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=28.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
.++.+++|+|++|||||||++.|+|.+. +..|+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~ 104 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK 104 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence 3478999999999999999999999875 55554
No 220
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.67 E-value=2.2e-05 Score=63.74 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..+++|+|++||||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 221
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=6.4e-05 Score=64.09 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.4
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45667799999999999999999999873
No 222
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.61 E-value=3.4e-05 Score=61.49 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=23.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999998655
No 223
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.61 E-value=0.00019 Score=63.47 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.6
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999998863
No 224
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=7.4e-05 Score=65.58 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.4
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-+++|+++.|.|++|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 57899999999999999999999988764
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.57 E-value=4.6e-05 Score=63.60 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=28.5
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
.-.+|.+++|+|++||||||++++|++.+.-.+.+.|.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~ 49 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 49 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence 35678999999999999999999999865322244444
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.53 E-value=0.00099 Score=60.99 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.++.++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998884
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.53 E-value=4e-05 Score=60.54 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999864
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.52 E-value=5.3e-05 Score=59.32 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++|.|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998863
No 229
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.52 E-value=2.9e-05 Score=69.07 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=32.7
Q ss_pred EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|+|.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 345666666421 1126789999998 8999999999999999999994
No 230
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=1.4e-05 Score=71.45 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..+.+.++.+.|+... ++++++|.| +|+|++|+|||||++.|.+..
T Consensus 16 ~~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 16 GYVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp -----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred ceEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 3578899999997743 558888876 999999999999999998764
No 231
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.49 E-value=3.8e-05 Score=66.83 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++.+++|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999874
No 232
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.48 E-value=4.6e-05 Score=64.39 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.5
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+.. ....+.++.|+|++||||||+++.|+..+
T Consensus 24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4443 56778999999999999999999999987
No 233
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.45 E-value=0.00018 Score=62.85 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=30.7
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456666668999999999999999999998887654
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.44 E-value=8e-05 Score=59.72 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-.+++|+|++|||||||++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35899999999999999999999874
No 235
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.44 E-value=8.3e-05 Score=58.77 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999877
No 236
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.43 E-value=7.3e-05 Score=62.94 Aligned_cols=33 Identities=30% Similarity=0.550 Sum_probs=24.3
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.++++.++.| +.|.||+|+|||||++.|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 4555555555 88999999999999999999874
No 237
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.43 E-value=7.2e-05 Score=59.96 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=20.8
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
+++++++..+.. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 458888888766 6789999999999999999984
No 238
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.40 E-value=0.00012 Score=66.98 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+..+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999873
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.38 E-value=7.4e-05 Score=58.35 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 240
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.37 E-value=0.00012 Score=58.50 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..+.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998866
No 241
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.36 E-value=0.00013 Score=59.90 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
.+.+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999998
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.36 E-value=0.00012 Score=58.24 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
|.++.|.|++||||||+++.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998866
No 243
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.36 E-value=0.00011 Score=62.17 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++|+||+|||||||.+.|+..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998873
No 244
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.34 E-value=0.00011 Score=57.34 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=18.7
Q ss_pred eEEEEECCCCCcHHHHHHHH
Q 025366 108 HIVGLAGPPGAGKSTLAAEV 127 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L 127 (254)
-+++|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 245
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.33 E-value=0.00013 Score=58.70 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999763
No 246
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.32 E-value=0.00011 Score=58.12 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999873
No 247
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.31 E-value=3.5e-05 Score=62.33 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.1
Q ss_pred eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
..|++.. . +++++++..++.+ ++|+|++|+|||||++.+.+
T Consensus 7 ~~~~~~~-~--~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFS-S--VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------C-H--HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-H--HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 3455532 2 5588999888775 68999999999999999875
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.31 E-value=0.00026 Score=62.64 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999987
No 249
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.30 E-value=0.00014 Score=61.11 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+-+++|.||+||||||+++.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999776
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.30 E-value=0.00015 Score=58.29 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
+..+|+|+|++||||||+.+.|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999875
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.27 E-value=0.00013 Score=57.85 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..+.++.|.|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999999766
No 252
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.25 E-value=0.0002 Score=57.75 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|.+++|.|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999865
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.25 E-value=0.00019 Score=57.07 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+.++.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998763
No 254
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.00014 Score=57.52 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gl 130 (254)
-.++|+|++|+|||||++.|++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999985
No 255
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=0.00018 Score=56.57 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHH
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~G 129 (254)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.24 E-value=0.00015 Score=71.42 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=28.5
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|.+.+++.+.|.||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688899999999999999999999999874
No 257
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.24 E-value=0.00095 Score=58.70 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999887
No 258
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.24 E-value=0.00021 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|.+|+|.|+.||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999998773
No 259
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.23 E-value=7.6e-05 Score=60.71 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999873
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.22 E-value=0.00021 Score=57.19 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999766
No 261
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00023 Score=56.73 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.+|+|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
No 262
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.20 E-value=0.00021 Score=57.71 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999763
No 263
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.19 E-value=0.00022 Score=57.79 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+|.+|+|.|+.||||||+++.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999865
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00021 Score=61.91 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=27.6
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+.+.++..+.|.||+|+|||||++.|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4567889999999999999999999999863
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.16 E-value=0.00025 Score=61.26 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=24.8
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
...+.++.|.||+||||||+.+.|+..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999999998765
No 266
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.16 E-value=0.00026 Score=56.48 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++|+|++|||||||+..|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4899999999999999999998873
No 267
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.16 E-value=0.00014 Score=57.84 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 268
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.15 E-value=0.00026 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+|.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999765
No 269
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.11 E-value=0.0003 Score=62.82 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.1
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
.+..+++.+ .+..|+|+|||||||++..|.=
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 556666665 5899999999999999999985
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.11 E-value=0.00025 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999998765
No 271
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.11 E-value=0.0002 Score=56.69 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998766
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00029 Score=55.94 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|.|.|++||||||+++.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 273
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.08 E-value=0.00032 Score=56.21 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.9
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+..+.+|+|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999999876
No 274
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.07 E-value=0.00034 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999877
No 275
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.06 E-value=0.00028 Score=67.98 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.9
Q ss_pred eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.+++++.++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678899999999999999999999998763
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.00044 Score=56.76 Aligned_cols=26 Identities=42% Similarity=0.603 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998876
No 277
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.02 E-value=0.00046 Score=62.32 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.6
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.+..+..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567888999999999999999999987
No 278
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.00 E-value=0.00051 Score=55.47 Aligned_cols=26 Identities=42% Similarity=0.655 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+.+|+|.|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999866
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.99 E-value=0.00045 Score=55.75 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
....+|+|.|+.||||||+.+.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 446789999999999999999998665
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.97 E-value=0.00051 Score=53.78 Aligned_cols=25 Identities=36% Similarity=0.390 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 281
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.97 E-value=0.00034 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-.|+|+|++|+|||||++.|+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3689999999999999999999763
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.96 E-value=0.00089 Score=59.15 Aligned_cols=26 Identities=27% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++.++.|+||.|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999876
No 283
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.00049 Score=54.64 Aligned_cols=25 Identities=40% Similarity=0.662 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 284
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.0005 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.95 E-value=0.00083 Score=58.82 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.++.|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5689999999999999999998776
No 286
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.0005 Score=56.03 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 287
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.94 E-value=0.00041 Score=55.12 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|+|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.00048 Score=56.85 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++.++.|.|+.||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998765
No 289
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.94 E-value=0.00044 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 290
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.001 Score=58.48 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999887
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.91 E-value=0.00039 Score=59.15 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|++|||||||++.|+|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 292
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.90 E-value=0.00063 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
No 293
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.88 E-value=0.00052 Score=56.35 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998764
No 294
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.88 E-value=0.00061 Score=55.59 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 295
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.87 E-value=0.0014 Score=57.33 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 296
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.87 E-value=0.00066 Score=56.27 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=26.8
Q ss_pred eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+-.+.+..++.|+||.||||+|.++.|+-.+.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34456788999999999999999999998764
No 297
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.85 E-value=0.00072 Score=56.67 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++-+++|.|++||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998755
No 298
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.84 E-value=0.00064 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..++||+|+.||||||+.+.|+..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999875
No 299
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.83 E-value=0.00072 Score=57.23 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++.+|.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999874
No 300
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.83 E-value=0.00047 Score=62.97 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999975
No 301
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.78 E-value=0.00078 Score=57.83 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
...+|+|.|++||||||+++.|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.00078 Score=53.44 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.++|+|+.|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999865
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.73 E-value=0.00089 Score=51.45 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998854
No 304
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.72 E-value=0.0019 Score=58.44 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++|+||+|||||||...|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998773
No 305
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.72 E-value=0.003 Score=57.64 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=30.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345555568899999999999999999998888766
No 306
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.0011 Score=54.19 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999998874
No 307
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.71 E-value=0.001 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
++.|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 308
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.00061 Score=56.59 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.4
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.+.+|+.+.+.||+||||||++..+...
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4567999999999999999988776543
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.69 E-value=0.001 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.68 E-value=0.001 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988754
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.68 E-value=0.028 Score=51.26 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988774
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.67 E-value=0.001 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++++|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998754
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.67 E-value=0.00092 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.67 E-value=0.0016 Score=53.26 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=28.2
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+++.-+.+. |..+.|+||+|+|||||+..|+...
T Consensus 24 ~lHa~~v~~~-g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDIY-GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEET-TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEEC-CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566666664 8899999999999999998887654
No 315
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.65 E-value=0.00091 Score=58.73 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999874
No 316
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.64 E-value=0.0011 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998865
No 317
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.63 E-value=0.0011 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 318
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.63 E-value=0.0012 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998854
No 319
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.62 E-value=0.00088 Score=57.32 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.62 E-value=0.0012 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 321
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.62 E-value=0.0012 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 322
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.62 E-value=0.0013 Score=51.25 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998753
No 323
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.61 E-value=0.0012 Score=51.32 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 324
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.61 E-value=0.0012 Score=54.18 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+-++.|.|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998866
No 325
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.60 E-value=0.0011 Score=51.02 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 326
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.001 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 327
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.59 E-value=0.00094 Score=51.76 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 328
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.58 E-value=0.0012 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998863
No 329
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.58 E-value=0.0012 Score=53.81 Aligned_cols=25 Identities=40% Similarity=0.607 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999875
No 330
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.57 E-value=0.0016 Score=53.62 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-+|.+|.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999998874
No 331
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.57 E-value=0.0017 Score=58.09 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (254)
.+..++|+|++|||||||++.|..... +..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~ 65 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR 65 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence 466789999999999999999998874 44444
No 332
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0015 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999873
No 333
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.55 E-value=0.0013 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|.|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.54 E-value=0.0018 Score=53.69 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.++.|.|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999997663
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.54 E-value=0.0014 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998743
No 336
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.54 E-value=0.0014 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
No 337
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0019 Score=50.45 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998873
No 338
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.53 E-value=0.0015 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 339
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.52 E-value=0.0015 Score=56.11 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 340
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.52 E-value=0.0015 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999999864
No 341
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.52 E-value=0.0015 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 342
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.52 E-value=0.002 Score=56.30 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.5
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
.+++..+.+ .|.-+.|+|+||+|||||+..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 568888888 589999999999999999998887
No 343
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.52 E-value=0.0014 Score=54.68 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=22.5
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|.+|.|.|++||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999998873
No 344
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.51 E-value=0.0011 Score=51.10 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
No 345
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.48 E-value=0.0017 Score=54.46 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998874
No 346
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.48 E-value=0.0016 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 578999999999999999998763
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.48 E-value=0.0016 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 348
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.48 E-value=0.0008 Score=51.79 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999997644
No 349
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.47 E-value=0.0034 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=20.2
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHI-VGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~Gei-vgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|++ +.+.|+.|+||||++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4664 7788999999999966666555
No 350
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.46 E-value=0.0017 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.|+|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 358999999999999999998754
No 351
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.45 E-value=0.0023 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999997743
No 352
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.45 E-value=0.0011 Score=52.48 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.-.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 353
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.45 E-value=0.00084 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998865
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.45 E-value=0.0017 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998864
No 355
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.44 E-value=0.0017 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++++|+.|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0018 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998854
No 357
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.44 E-value=0.0018 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999877664
No 358
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.43 E-value=0.0012 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 468999999999999999998864
No 359
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.43 E-value=0.0016 Score=50.52 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 360
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.43 E-value=0.0014 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.|+|+|.+|+|||||++.|.|..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999999999865
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.42 E-value=0.001 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999987643
No 362
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.41 E-value=0.0018 Score=53.04 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.|+||.||||+|.++.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 363
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.41 E-value=0.0016 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 364
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0021 Score=53.48 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|.+++|.|+.||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999877
No 365
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.40 E-value=0.0017 Score=58.91 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.2
Q ss_pred eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334457899999999999999999987655
No 366
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.40 E-value=0.0021 Score=52.94 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+|.+|.|.|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998874
No 367
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.40 E-value=0.00084 Score=66.02 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.6
Q ss_pred eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 100 vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356778899999999999999999999999984
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.39 E-value=0.002 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 369
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.39 E-value=0.0017 Score=58.00 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999974
No 370
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.37 E-value=0.002 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
--|+|+|+.|+|||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998754
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.37 E-value=0.002 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999865
No 372
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.37 E-value=0.0078 Score=53.73 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+.-+.|.||+|+|||+|++.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 373
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.37 E-value=0.002 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998864
No 374
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.37 E-value=0.0013 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998754
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.36 E-value=0.0019 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
--++|+|+.|+|||||++.+.+-.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 376
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.36 E-value=0.0017 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999864
No 377
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.36 E-value=0.0028 Score=52.73 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|.+|.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998873
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.35 E-value=0.0021 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998864
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.002 Score=52.34 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.+++|+|+.|+|||||++.|++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998875
No 380
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.0011 Score=57.74 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=26.0
Q ss_pred cceeeeeCCC--eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 98 ~~vsl~i~~G--eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.+.-.+..| ..+.|.||+|+||||+++.+++.+
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3343334444 348999999999999999999986
No 381
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.34 E-value=0.0019 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
No 382
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.34 E-value=0.0021 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999854
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.34 E-value=0.0022 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357999999999999999998753
No 384
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.32 E-value=0.0023 Score=57.04 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
+..++|+|.+|+|||||++.|++-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999994
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.32 E-value=0.0023 Score=50.06 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 386
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.32 E-value=0.0018 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-+|+|+|..|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999999864
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0021 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998864
No 388
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.31 E-value=0.0021 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
--++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 468999999999999999998843
No 389
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.30 E-value=0.006 Score=60.26 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+.|.||+|+|||++++.|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999999883
No 390
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.30 E-value=0.0027 Score=52.53 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|.++.+.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999884
No 391
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.30 E-value=0.0023 Score=51.19 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|.+|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999753
No 392
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.30 E-value=0.003 Score=52.65 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
....-+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455688999999999999999999873
No 393
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.002 Score=55.99 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+.|.||+|+|||||++.|+..+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356789999999999999999999873
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.28 E-value=0.0035 Score=50.13 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=26.5
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
.++..-+.+. |.-+.|.|++|+|||||+..|..
T Consensus 6 ~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 3466666665 88999999999999999887765
No 395
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.27 E-value=0.0028 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+.|.||+|+|||||++.++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3899999999999999999998773
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.27 E-value=0.0025 Score=50.37 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 397
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.26 E-value=0.0019 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|..|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 398
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.26 E-value=0.0025 Score=49.81 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998873
No 399
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.25 E-value=0.0026 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.25 E-value=0.0023 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999854
No 401
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.24 E-value=0.0023 Score=51.28 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3468999999999999999999864
No 402
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0023 Score=50.72 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.|+|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 403
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0024 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999988754
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0027 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.--++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998853
No 405
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.21 E-value=0.0028 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998754
No 406
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.20 E-value=0.0028 Score=50.34 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0028 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998864
No 408
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.19 E-value=0.0023 Score=54.19 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 409
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.19 E-value=0.0022 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.|+|+|+.|+|||||++.|.|..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 410
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.19 E-value=0.0012 Score=55.59 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=25.5
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+....| +.|.||+|+|||||++.|+....
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444445 77999999999999999999764
No 411
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.17 E-value=0.0026 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 412
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.16 E-value=0.003 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.--|+|+|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998754
No 413
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.16 E-value=0.0022 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998874
No 414
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.16 E-value=0.0038 Score=48.61 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 415
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.16 E-value=0.0025 Score=50.95 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 416
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.14 E-value=0.0021 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999988643
No 417
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.14 E-value=0.0023 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998853
No 418
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.13 E-value=0.0017 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++.+|+|.|+.||||||+++.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998776
No 419
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0026 Score=51.30 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.4
Q ss_pred cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++.|.-...-.|+|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3444443334578999999999999999998853
No 420
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.12 E-value=0.0034 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.|+|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 368999999999999999888753
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.11 E-value=0.0015 Score=52.44 Aligned_cols=24 Identities=42% Similarity=0.390 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|++|+|||||++.+++..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999987643
No 422
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.09 E-value=0.0043 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
|.+|+|-|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998873
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.09 E-value=0.003 Score=51.14 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 424
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.09 E-value=0.0033 Score=54.70 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.4
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999888864
No 425
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.0041 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.--++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998754
No 426
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.08 E-value=0.0027 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|..|||||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 427
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0027 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999854
No 428
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.05 E-value=0.0019 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|.+|+|||||++.|.+.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
No 429
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.05 E-value=0.0036 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
No 430
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.04 E-value=0.0039 Score=57.37 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=29.6
Q ss_pred cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 33444 5666899999999999999999999988763
No 431
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.03 E-value=0.0025 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gl 130 (254)
-++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
No 432
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.00 E-value=0.0025 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gl 130 (254)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 433
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.99 E-value=0.0039 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+-..++|+|..|+|||||++.++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34688999999999999999988765
No 434
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.98 E-value=0.024 Score=51.84 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=28.4
Q ss_pred ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
|+.+.--+.+|+++.|.|++|+|||||+--++...
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 34444458899999999999999999987777655
No 435
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.98 E-value=0.0045 Score=50.98 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.7
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHH
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~ 128 (254)
-+++|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999999986554
No 436
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.98 E-value=0.0037 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999854
No 437
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.97 E-value=0.0029 Score=57.77 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+++|+|++|+||||++..|++.+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999873
No 438
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.96 E-value=0.0024 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999987643
No 439
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.95 E-value=0.0032 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.|+|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 440
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.004 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998763
No 441
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.94 E-value=0.0029 Score=51.89 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.|+|+|+.|+|||||++.+.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998753
No 442
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.93 E-value=0.0034 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|..|+|||||++.|.|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.92 E-value=0.0024 Score=49.98 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=9.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEECCCCC-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999988653
No 444
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.91 E-value=0.0027 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.|+|+|+.|+|||||++.+.+-.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999988754
No 445
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.91 E-value=0.002 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998765
No 446
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.91 E-value=0.0015 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.-.|+|+|+.|+|||||++.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4478999999999999999998863
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.88 E-value=0.0036 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998754
No 448
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.86 E-value=0.0055 Score=52.71 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=24.4
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++....+.|.||+|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456788889999999999999999873
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.84 E-value=0.0034 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gl 130 (254)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 450
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.84 E-value=0.0047 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
No 451
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.84 E-value=0.0064 Score=53.78 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
....+++|+|+.|+|||||++.|++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999887
No 452
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.83 E-value=0.0055 Score=54.46 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.4
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999998887665
No 453
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.82 E-value=0.0036 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
--++|+|..|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999888754
No 454
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.0054 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-|+|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 455
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.79 E-value=0.0059 Score=46.65 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..+.-+.|.||+|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345668999999999999999999876
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.77 E-value=0.0064 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+.|.||+|+|||||++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998873
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.74 E-value=0.0053 Score=49.40 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0046 Score=50.65 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.|+|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.71 E-value=0.0061 Score=49.51 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.--++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998753
No 460
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.70 E-value=0.0049 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|..|+|||||++.|.|..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 461
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.70 E-value=0.0041 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++|+|..|+|||||++.|.|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 478999999999999999999864
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.69 E-value=0.0066 Score=48.50 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999875
No 463
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.0075 Score=52.59 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.++.-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 445778999999999999999999876
No 464
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.69 E-value=0.0066 Score=50.65 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
-.+||+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988763
No 465
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.64 E-value=0.0061 Score=49.04 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
--++|+|+.|+|||||++.+.+-.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 466
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.64 E-value=0.0024 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHHh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gl 130 (254)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998876
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.63 E-value=0.0072 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCcHHHHH-HHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLl-k~L~Gll 131 (254)
+|.++.+.||.|+||||++ +++....
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 5554443
No 468
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.63 E-value=0.0049 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.++++|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999754
No 469
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.56 E-value=0.0059 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
..++++|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999865
No 470
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.50 E-value=0.0023 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHHh
Q 025366 109 IVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988754
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.50 E-value=0.0079 Score=49.44 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.2
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+++...+.|.||.|+||||++..|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55556799999999999999999999873
No 472
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.49 E-value=0.0082 Score=55.89 Aligned_cols=28 Identities=7% Similarity=0.084 Sum_probs=25.8
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999999984
No 473
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.49 E-value=0.008 Score=53.08 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 356789999999999999999999873
No 474
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.46 E-value=0.0025 Score=58.37 Aligned_cols=30 Identities=43% Similarity=0.676 Sum_probs=24.7
Q ss_pred eeCCCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025366 103 NVNVKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 103 ~i~~Ge--ivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..|. .+.|.||+|+|||||++.|+....
T Consensus 44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444 488999999999999999999874
No 475
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.46 E-value=0.0099 Score=56.16 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.4
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.|.+|.|.|.+||||||+.+.|...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 476
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.45 E-value=0.0089 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999874
No 477
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.45 E-value=0.0091 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998864
No 478
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.43 E-value=0.0045 Score=56.68 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhh
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll 131 (254)
-.|+|+|.+|+|||||++.|+|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998853
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.41 E-value=0.009 Score=52.43 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.9
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999883
No 480
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.40 E-value=0.01 Score=50.10 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.1
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.....+.|.||+|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456788999999999999999999763
No 481
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.37 E-value=0.011 Score=52.12 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
....-+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3466899999999999999999998763
No 482
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.36 E-value=0.011 Score=56.45 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+|.+|.|.|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999877
No 483
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.30 E-value=0.0096 Score=52.25 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.5
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.+.+|.++.|.||.|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4667888999999999999999988764
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.30 E-value=0.012 Score=51.01 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+..-+.|.||+|+|||+|++.|+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 456789999999999999999998863
No 485
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.29 E-value=0.0058 Score=48.15 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~G 129 (254)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345689999999999999998854
No 486
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.012 Score=53.61 Aligned_cols=30 Identities=33% Similarity=0.527 Sum_probs=25.4
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.+..=+.|.||+|+|||+|++.|++...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345556688999999999999999999874
No 487
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.26 E-value=0.012 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 488
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.013 Score=53.50 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=25.9
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+++..=+.|.||+|+|||+|++.|++...
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 455666788999999999999999999874
No 489
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.013 Score=53.55 Aligned_cols=30 Identities=40% Similarity=0.566 Sum_probs=25.8
Q ss_pred eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+.+..=+.|.||+|+|||+|++.|++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 455666788999999999999999999874
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.14 E-value=0.096 Score=56.00 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.5
Q ss_pred eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 104 i~~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+++|+++.|.||+|+|||||+..++...
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999998887654
No 491
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.11 E-value=0.014 Score=54.18 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.+..+|+|+|++|+||||++..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999997763
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.10 E-value=0.008 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHH-HHHhh
Q 025366 109 IVGLAGPPGAGKSTLAAE-VVRRI 131 (254)
Q Consensus 109 ivgLiGpNGsGKSTLlk~-L~Gll 131 (254)
.++|+|+.|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999998 66654
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.07 E-value=0.013 Score=51.76 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
+..-+.|.||.|+|||||++.|+..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 345588999999999999999999873
No 494
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.07 E-value=0.016 Score=54.06 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 106 ~GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
...+|.++|.+||||||+.+.|+..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998766
No 495
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.06 E-value=0.036 Score=53.85 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred EEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHH
Q 025366 110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL 189 (254)
Q Consensus 110 vgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~ 189 (254)
+.|.||+|+|||+|++.|+..+. ...... +.++.-.+.......
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~---------------~~~~~~-i~i~~s~~~~~~~~~-------------------- 567 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIF---------------GDEESM-IRIDMSEYMEKHSTS-------------------- 567 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH---------------SCTTCE-EEEEGGGGCSSCCCC--------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHhc---------------CCCcce-EEEechhcccccccc--------------------
Q ss_pred HHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366 190 LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (254)
Q Consensus 190 ~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~ 253 (254)
........-.....+|++||. --+++.....+.+++++
T Consensus 568 -------------------------~~~l~~~~~~~~~~vl~lDEi-~~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 568 -------------------------GGQLTEKVRRKPYSVVLLDAI-EKAHPDVFNILLQVLED 605 (758)
T ss_dssp ----------------------------CHHHHHHCSSSEEEEECG-GGSCHHHHHHHHHHHHH
T ss_pred -------------------------cchhhHHHHhCCCeEEEEeCc-cccCHHHHHHHHHHhcc
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.04 E-value=0.016 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll 131 (254)
+.-+.|.||.|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 497
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.02 E-value=0.013 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.-+.|.||+|+||||+++.|+..+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999999984
No 498
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.02 E-value=0.014 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 108 eivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
..+.|.||+|+|||||++.|+....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998764
No 499
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.02 E-value=0.015 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gll~ 132 (254)
.-+|+|.|+.||||||+.+.|+..+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999874
No 500
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.02 E-value=0.0041 Score=49.84 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHHh
Q 025366 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (254)
Q Consensus 107 GeivgLiGpNGsGKSTLlk~L~Gl 130 (254)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999888753
Done!