BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025368
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/265 (78%), Positives = 226/265 (85%), Gaps = 11/265 (4%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
MGK+KIGINGFGRIGRLVARV LQ +DVELVA TYMFKYD+VHGQWKH +
Sbjct: 1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
+K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 110 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
V+ISAPSKDAPMFV GVNE++Y +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV 240
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 DVSVVDLTVRIEKAASYDAIKSAIK 265
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/264 (78%), Positives = 225/264 (85%), Gaps = 11/264 (4%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHEL 50
GK+KIGINGFGRIGRLVARV LQ +DVELVA TYMFKYD+VHGQWKH ++
Sbjct: 1 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDI 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT V
Sbjct: 61 KIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKV 120
Query: 111 IISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
+ISAPSKDAPMFV GVNE++Y +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH
Sbjct: 121 VISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVH 180
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTVD
Sbjct: 181 AITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD 240
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
VSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 VSVVDLTVRIEKAASYDAIKSAIK 264
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 327 bits (837), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 193/265 (72%), Gaps = 13/265 (4%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
MGKVK+G+NGFGRIGRLV R V++VA YMF+YDS HG++ H
Sbjct: 4 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 62
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
+K ++ K ++ G P+T+F R+P +I W + GAEYVVESTGVFT
Sbjct: 63 VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 121
Query: 110 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
VIISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 122 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 181
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
H+ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT
Sbjct: 182 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 241
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDLT RLEK A YD+IK +K
Sbjct: 242 NVSVVDLTCRLEKPAKYDDIKKVVK 266
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 326 bits (836), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 167/265 (63%), Positives = 193/265 (72%), Gaps = 13/265 (4%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
MGKVK+G+NGFGRIGRLV R V++VA YMF+YDS HG++ H
Sbjct: 1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGT 59
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
+K ++ K ++ G P+T+F R+P +I W + GAEYVVESTGVFT
Sbjct: 60 VKAENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 110 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
VIISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
H+ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT
Sbjct: 179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDLT RLEK A YD+IK +K
Sbjct: 239 NVSVVDLTCRLEKPAKYDDIKKVVK 263
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 320 bits (821), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 197/261 (75%), Gaps = 14/261 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVK 53
KIGINGFGRIGRLV R L+ ++VA YMFKYDS HG +K E+KV+
Sbjct: 2 KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKVE 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT VIIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 114 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 174 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 233
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 234 VDLTVRLEKDASYDEIKAAIK 254
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 319 bits (818), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 166/261 (63%), Positives = 196/261 (75%), Gaps = 14/261 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVK 53
KIGINGFGRIGRLV R L+ ++VA YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT VIIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 114 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 174 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 233
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 234 VDLTVRLEKDASYDEIKAAIK 254
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 318 bits (816), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/261 (63%), Positives = 196/261 (75%), Gaps = 14/261 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVK 53
KIGINGFGRIGRLV R L ++VA YMFKYDS HG +K E+K++
Sbjct: 3 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKME 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT V+IS
Sbjct: 61 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 114 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 174 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 233
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT DVSV
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 239
Query: 234 VDLTVRLEKDASYDEIKAAIK 254
VDLTVRL K+ SYD+IKAA+K
Sbjct: 240 VDLTVRLGKECSYDDIKAAMK 260
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 318 bits (816), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/261 (63%), Positives = 196/261 (75%), Gaps = 14/261 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVK 53
KIGINGFGRIGRLV R L ++VA YMFKYDS HG +K E+K++
Sbjct: 2 KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFKG-EVKME 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT V+IS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 114 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
APS DAPMFV GVN +Y ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 174 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 233
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT DVSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 238
Query: 234 VDLTVRLEKDASYDEIKAAIK 254
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 315 bits (807), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 160/264 (60%), Positives = 191/264 (72%), Gaps = 13/264 (4%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHEL 50
GKVK+G++GFGRIGRLV R V++VA YMF+YDS HG++ H +
Sbjct: 1 GKVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K +D K ++ G K +T+F R+PE I W + G YVVESTGVFT +
Sbjct: 60 KAEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRI 118
Query: 111 IISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
+ISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH
Sbjct: 119 VISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVH 178
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
+ITATQKTVD PS K WRGGR A+ N+IP+STGAAKAVGKV+P L+GKLTGMAFRVPT +
Sbjct: 179 AITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTAN 238
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
VSV+DLT RLEK A YD+IK +K
Sbjct: 239 VSVLDLTCRLEKPAKYDDIKKVVK 262
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 314 bits (805), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/261 (63%), Positives = 195/261 (74%), Gaps = 14/261 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVK 53
KIGINGFGRIGRLV R L+ ++VA YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K +TVF PE IPW++ GAEY+VESTGVFT VIIS
Sbjct: 60 DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 114 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
APS DAPMFV GVN +Y ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 174 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 233
ATQKTVDGPS+KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGMAFRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 234 VDLTVRLEKDASYDEIKAAIK 254
VDLTVRL K+ SYD+IKAA+K
Sbjct: 239 VDLTVRLGKECSYDDIKAAMK 259
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 314 bits (805), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/262 (62%), Positives = 190/262 (72%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
V I INGFGRIGRLV R+ L+R ++++VA YMFKYDS HG++K
Sbjct: 15 VSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYKGEV--S 72
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 112
D L+ K V VF ++P +PW + G + V+STGVF V+I
Sbjct: 73 HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVI 132
Query: 113 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
+APSK APMFVVGVNE++Y E IVSNASCTTNCLAP+AK+I+D+FGI EGLMTTVHSI
Sbjct: 133 TAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTVHSI 191
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPT DVS
Sbjct: 192 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTTDVS 251
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTV+L K A+YDEIKAA+K
Sbjct: 252 VVDLTVKLVKAATYDEIKAAVK 273
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 313 bits (803), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 164/262 (62%), Positives = 189/262 (72%), Gaps = 13/262 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
VK+G+NGFGRIGRLV R V++VA YMF+YDS HG++ H +K
Sbjct: 1 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 112
++ K ++ G K +T+F R+P I W + GAEYVVESTGVFT VII
Sbjct: 60 ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 113 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
SAPS DAPMFV+GVN +Y L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT +VS
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 238
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLT RLEK A YD+IK +K
Sbjct: 239 VVDLTCRLEKAAKYDDIKKVVK 260
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 313 bits (801), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 158/262 (60%), Positives = 186/262 (70%), Gaps = 13/262 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
V++ INGFGRIGRLV R+ L R +VE+VA YMFKYDS HG++
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGE--VS 67
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 112
DDK ++ K + + R+P +PW + + ++STGVF V+I
Sbjct: 68 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 113 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
+APS APMFV+GVNE +Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 247
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTV+L K+ +YDEIK +K
Sbjct: 248 VVDLTVKLNKETTYDEIKKVVK 269
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 313 bits (801), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 158/262 (60%), Positives = 186/262 (70%), Gaps = 13/262 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
V++ INGFGRIGRLV R+ L R +VE+VA YMFKYDS HG++
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEV--S 59
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 112
DDK ++ K + + R+P +PW + + ++STGVF V+I
Sbjct: 60 HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 113 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
+APS APMFV+GVNE +Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTV+L K+ +YDEIK +K
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVK 261
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/263 (60%), Positives = 189/263 (71%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKV 52
VK+GINGFGRIGRLV RV +++ V +VA YMFKYDS HG++K ++
Sbjct: 2 VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYKG-TVEH 59
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 112
K+ + L+ + VF + P+EIPW+ G YVVE+TGV+ VI+
Sbjct: 60 KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 113 SAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
+APS DAPM V+GVNE +Y P + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
TATQKTVDGPS KDWRGGR A NIIPSSTGAAKAVGKV+P LNGKLTGMAFRVPT +V
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDLT RL + ASY IK A+K
Sbjct: 239 SVVDLTCRLAQPASYTAIKEAVK 261
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 298 bits (762), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 187/265 (70%), Gaps = 17/265 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHH-EL 50
++ +GINGFGRIGRLV R +++ V++VA YMFKYDS HG++K E
Sbjct: 7 ELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEF 65
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
+ + L+ ++V+ + P++IPW G+ YVVESTGV+ V
Sbjct: 66 R---NGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 111 IISAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
+ISAPS DAPMFV+GVNEN+Y P +NIVSNASCTTNCLAPLAKVIH++FGIVEGLMTTV
Sbjct: 123 VISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTV 182
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS TATQKTVDGPS K WR GR A NIIP+STGAAKAV KV+P L GKLTGMAFRVPT
Sbjct: 183 HSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTP 242
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLT RL + A Y IK A+K
Sbjct: 243 DVSVVDLTCRLAQPAPYSAIKEAVK 267
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 296 bits (759), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/262 (59%), Positives = 190/262 (72%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA YM KYDS HG++ ++VK
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRF-DGTVEVK 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K + V R+P + W E G + V E+TG+F V+++
Sbjct: 62 DGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 121 GPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAT 179
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VS
Sbjct: 180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 239
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTVRLEK A+Y++IKAA+K
Sbjct: 240 VVDLTVRLEKAATYEQIKAAVK 261
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 296 bits (759), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/262 (59%), Positives = 190/262 (72%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA YM KYDS HG++ ++VK
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRF-DGTVEVK 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K + V R+P + W E G + V E+TG+F V+++
Sbjct: 61 DGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 119
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 GPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAT 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VS
Sbjct: 179 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 238
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 VVDLTVRLEKAATYEQIKAAVK 260
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 296 bits (759), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/262 (59%), Positives = 190/262 (72%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA YM KYDS HG++ ++VK
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRF-DGTVEVK 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K + V R+P + W E G + V E+TG+F V+++
Sbjct: 61 DGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 119
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 GPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAT 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VS
Sbjct: 179 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 238
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 VVDLTVRLEKAATYEQIKAAVK 260
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 295 bits (755), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 185/265 (69%), Gaps = 19/265 (7%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHH-ELKVK 53
+GINGFGRIGRLV R ++R+D+ +VA Y+ KYDSVHG + E+ K
Sbjct: 20 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D L K V VF ++P EIPW +GA+ V ESTGVFT VIIS
Sbjct: 80 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 114 APSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP KD PM+V+GVN EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 172 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLT +L K AS +EI A+K
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVK 281
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 295 bits (755), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 185/265 (69%), Gaps = 19/265 (7%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHH-ELKVK 53
+GINGFGRIGRLV R ++R+D+ +VA Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D L K V VF ++P EIPW +GA+ V ESTGVFT VIIS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 114 APSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP KD PM+V+GVN EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 172 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLT +L K AS +EI A+K
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVK 286
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 189/262 (72%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA YM KYDS HG++ ++VK
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDG-TVEVK 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K + V R+P + W E G + V E+TG+F V+++
Sbjct: 62 DGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 120
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
PSKD PMFV G N ++Y + +IVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 121 GPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHAT 179
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VS
Sbjct: 180 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 239
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTVRLEK A+Y++IKAA+K
Sbjct: 240 VVDLTVRLEKAATYEQIKAAVK 261
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 291 bits (744), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/265 (59%), Positives = 184/265 (69%), Gaps = 19/265 (7%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHH-ELKVK 53
+GINGFGRIGRLV R ++R+D+ +VA Y+ KYDSVHG + E+ K
Sbjct: 25 LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D L K V VF ++P EIPW +GA+ V ESTGVFT VIIS
Sbjct: 85 D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 114 APSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP KD PM+V+GVN EY P + N++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 172 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA RVPT
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLT +L K AS +EI A+K
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVK 286
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 283 bits (723), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 156/265 (58%), Positives = 187/265 (70%), Gaps = 16/265 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
K+GINGFGRIGRLV R ++R DVE++A Y+ +YDSVHG + E+
Sbjct: 24 CKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYPG-EVSH 82
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVII 112
KD K L+ G K VTVF + P IPW + G Y+ ESTG+F VI+
Sbjct: 83 KDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVIM 141
Query: 113 SAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
SAP KD PMFV+GVN ++YK IVSNASCTTNCLAPLAK++HDKFGIVEGLMTTVH+
Sbjct: 142 SAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMTTVHA 201
Query: 172 ITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
+TA Q TVDGPS KDWR GR+A NIIP+STGAAKAVGK++P+LNGKLTGMAFRVP
Sbjct: 202 MTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFRVPVP 261
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLT +L K A Y++I AA+K
Sbjct: 262 DVSVVDLTCKLAKPAKYEDIVAAVK 286
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/268 (56%), Positives = 178/268 (66%), Gaps = 16/268 (5%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
M K+GINGFGRIGRLV R R D+E+VA Y+ KYDSVHGQ+
Sbjct: 1 MAVTKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEV 60
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
D LL GEK V+VF ++P +IPW + + V ESTGVF
Sbjct: 61 THA--DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 118
Query: 110 VIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
VI+SAP KD P++V+G+N ++Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 119 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 178
Query: 169 VHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 226
VH+ TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG+AFRV
Sbjct: 179 VHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRV 238
Query: 227 PTVDVSVVDLTVRLEKDASYDEIKAAIK 254
P VSVVDL RL+K A Y+E+ IK
Sbjct: 239 PIGTVSVVDLVCRLQKPAKYEEVALEIK 266
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 150/264 (56%), Positives = 177/264 (67%), Gaps = 16/264 (6%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKVK 53
K+GINGFGRIGRLV R R D+E+VA Y+ KYDSVHGQ+
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHA- 71
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D LL GEK V+VF ++P +IPW + + V ESTGVF VI+S
Sbjct: 72 -DGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP KD P++V+G+N ++Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 173 TATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG+AFRVP
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
VSVVDL RL+K A Y+E+ IK
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIK 274
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 152/262 (58%), Positives = 185/262 (70%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA Y KYDS HG++ ++VK
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYXAYXLKYDSTHGRF-DGTVEVK 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D ++ G+K + V R+P + W E G + V E+TG+F V+ +
Sbjct: 61 DGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVXT 119
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
PSKD P FV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 120 GPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHAT 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTG AFRVPT +VS
Sbjct: 179 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNVS 238
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 VVDLTVRLEKAATYEQIKAAVK 260
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/276 (53%), Positives = 181/276 (65%), Gaps = 25/276 (9%)
Query: 4 VKIGINGFGRIGRLVARVI----LQRDDVELVA-----------TYMFKYDSVHGQWKHH 48
+K+GINGFGRIGR+V + + L +++++VA Y KYDSVHG++KH
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 49 ELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 101
K DD ++ G + + V RNP ++PW + G EYV+ESTG+FT
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 102 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 158
V+ISAP S A FV+GVN N Y P E ++VSNASCTTNCLAPL V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 159 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 218
FGI GLMTTVHS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LTGMAFRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALK 278
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 256 bits (654), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 180/276 (65%), Gaps = 25/276 (9%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKHH 48
+K+GINGFGRIGR+V + + + ++++VA Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 49 ELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 101
K DD ++ G + + V RNP ++PW + G EYV+ESTG+FT
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 102 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 158
V+ISAP S A V+GVN +EY P E ++VSNASCTTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 159 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 218
FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LTGM+FRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 179/276 (64%), Gaps = 25/276 (9%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKHH 48
+K+GINGFGRIGR+V + + + ++++VA Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 49 ELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 101
K DD ++ G + + V RNP ++PW + G EYV+ESTG+FT
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 102 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 158
V+ISAP S A V+GVN +EY P E ++VSNAS TTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKEG 182
Query: 159 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 218
FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LTGM+FRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 178/276 (64%), Gaps = 25/276 (9%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKHH 48
+K+GINGFGRIGR+V + I + ++++VA Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 49 ELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 101
VK D ++ G + V RNP ++PW + G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 102 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVI-HDK 158
V+ISAP S A V+GVN++EY P ++VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 159 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 218
FGI GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LTGM+FRVPT DVSVVDLT R +D S EI AIK
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK 278
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 178/276 (64%), Gaps = 25/276 (9%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKHH 48
+K+GINGFGRIGR+V + I + ++++VA Y K+D+VHG+ K+
Sbjct: 3 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 49 ELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXX 101
VK D ++ G + V RNP ++PW + G +YV+ESTG+FT
Sbjct: 63 VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 102 XXXXXXXXVIISAP-SKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVI-HDK 158
V+ISAP S A V+GVN++EY P ++VSNASCTTNCLAP+ V+ +
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 159 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 218
FGI GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LTGM+FRVPT DVSVVDLT R +D S EI AIK
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIK 278
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 174/263 (66%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDA-EVSVN 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
+ ++ G K + V R+PE + W E G + VVESTG FT VIIS
Sbjct: 61 GNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ + V+GVN+++Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVHS
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D S KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +V
Sbjct: 180 YTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDL LEK+ + +E+ AA+K
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALK 261
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 174/263 (66%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDA-EVSVN 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
+ ++ G K + V R+PE + W E G + VVESTG FT VIIS
Sbjct: 61 GNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ + V+GVN+++Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVHS
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D S KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +V
Sbjct: 180 YTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDL LEK+ + +E+ AA+K
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALK 261
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 174/263 (66%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDA-EVSVN 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
+ ++ G K + V R+PE + W E G + VVESTG FT VIIS
Sbjct: 61 GNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ + V+GVN+++Y P+ + ++SNASCTTNCLAP AKV+H++FGIV G+MTTVHS
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +V
Sbjct: 180 YTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDL LEK+ + +E+ AA+K
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALK 261
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDA-EVSVN 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
+ ++ G K + V R+PE + W E G + VVESTG FT VIIS
Sbjct: 61 GNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ + V+GVN+++Y P+ + ++SNAS TTNCLAP AKV+H++FGIV G+MTTVHS
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +V
Sbjct: 180 YTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDL LEK+ + +E+ AA+K
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALK 261
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 173/263 (65%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDA-EVSVN 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
+ ++ G K + V R+PE + W E G + VVESTG FT VIIS
Sbjct: 61 GNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ + V+GVN+++Y P+ + ++SNAS TTNCLAP AKV+H++FGIV G+MTTVHS
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +V
Sbjct: 180 YTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDL LEK+ + +E+ AA+K
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALK 261
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 223 bits (568), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 171/264 (64%), Gaps = 18/264 (6%)
Query: 5 KIGINGFGRIGRLVARVILQRD--DVELVA----------TYMFKYDSVHGQWKHHELKV 52
++ INGFGRIGRLV R+I +R D+E+VA ++ KYDSVH ++ KV
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPG---KV 58
Query: 53 K-DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 111
+ + +L+ K + VF +P ++PW + G ++V+ESTGVF VI
Sbjct: 59 EYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118
Query: 112 ISAPSKDAPM-FVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
I+AP+K + V+G NE++ KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTVH
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
S T Q+ +D P KD R RAA+ NIIP++TGAAKAV V+P + GKL GMA RVPT D
Sbjct: 179 SYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPD 237
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
S+ DLTV +EK+ + +E+ A +K
Sbjct: 238 GSITDLTVLVEKETTVEEVNAVMK 261
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 165/254 (64%), Gaps = 15/254 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR R R+++E+VA ++ KYDSVHG +K ++ K
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKG-SVEAK 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
DD ++ G K + VF ++P +IPW + G + V+E+TGVF VII+
Sbjct: 62 DDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIIT 120
Query: 114 APSKDAPMFVV-GVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ + VV GVNE +Y P E NI+SNASCTTNCLAP KV+++ FG+ +G M TVH+
Sbjct: 121 APAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHA 180
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD+R RAA+ NI+P++TGAAKA+G+V+P L GKL G A RVP D
Sbjct: 181 YTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDG 239
Query: 232 SVVDLTVRLEKDAS 245
S++DLTV + K S
Sbjct: 240 SLIDLTVVVNKAPS 253
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 213 bits (541), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 168/264 (63%), Gaps = 16/264 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQ--RDDVELVA----------TYMFKYDSVHGQWKHHELK 51
V++ INGFGRIGR + R I++ R D+++VA ++ +YDSVHG++ E++
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPK-EVE 61
Query: 52 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 111
V D T+ G P+ V VRNP E+PW E + +E TG+FT VI
Sbjct: 62 VAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 112 ISAPSKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
+SAP+ A + VV GVN ++ + ++SNASCTTNCLAP+A+V++D GI +G MTT+H
Sbjct: 121 VSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIH 180
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
S T Q T+D KD RAA+ ++IP+STGAAKAVG VLP L GKL G+A RVPT +
Sbjct: 181 SYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTPN 239
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
VSVVDLT +++ + +E+ AI+
Sbjct: 240 VSVVDLTFIAKRETTVEEVNNAIR 263
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 171/270 (63%), Gaps = 21/270 (7%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELK 51
G +K+ INGFGRIGR V ++ +R +++VA ++ KYDS G + + +++
Sbjct: 20 GSMKLAINGFGRIGRNVFKIAFERG-IDIVAINDLTDPKTLAHLLKYDSTFGVY-NKKVE 77
Query: 52 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXX-----XXXXXX 106
+D ++ G + + + R+P+ +PWA+ G + V+ESTGVF+
Sbjct: 78 SRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136
Query: 107 XXXVIISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 165
VI++ P+KD V+GVN+++ +L VSNASCTTNCLAPLAKV+H+ FGI +GL
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGL 196
Query: 166 MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 225
MTTVH+ T Q+ +D P S D R RAA+ +IIP+STGAAKAVG VLP L GKL G + R
Sbjct: 197 MTTVHAYTNDQRILDLPHS-DLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMR 255
Query: 226 VPTVDVSVVDLTVRL-EKDASYDEIKAAIK 254
VP S+VDLTV+L +KD + +EI + ++
Sbjct: 256 VPVPTGSIVDLTVQLKKKDVTKEEINSVLR 285
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 161/255 (63%), Gaps = 17/255 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R D L AT++ KYDS+ G +K ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKA-DV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K+ D++T KP+ V R+P ++PWAE G + V+E TGVF V
Sbjct: 60 KIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKV 119
Query: 111 IISAPSK--DAPMFVVGVNENEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
II+AP+K D P +VVGVNE +Y ++ NI+SNASCTTNCLAP KV+ ++ GIV+G MT
Sbjct: 120 IITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMT 179
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G+A RVP
Sbjct: 180 TTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVP 238
Query: 228 TVDVSVVDLTVRLEK 242
T +VSVVDL V +EK
Sbjct: 239 TPNVSVVDLVVNIEK 253
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/265 (42%), Positives = 158/265 (59%), Gaps = 16/265 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQ--RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
V++ INGFGRIGR + R I++ R D+E+VA ++ +YDSVHG +
Sbjct: 23 SVRVAINGFGRIGRNILRAIIESGRQDIEVVALNDLGSVETNAHLLRYDSVHGCFPGTVQ 82
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
V D + G + VF R+P ++PW + +E TG+FT V
Sbjct: 83 VVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRV 140
Query: 111 IISAPSKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
++SAPS+ A + VV GVN E +++SNASCTTNCLAP+A+V+H+ GI +G MTT+
Sbjct: 141 LVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGFMTTI 200
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q +D +D RAA+ ++IP+STGAAKAVG VLP L G L G++ RVPT
Sbjct: 201 HSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPTP 259
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDLT ++ + +EI AI+
Sbjct: 260 NVSVVDLTFTAKRSTTIEEINTAIR 284
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 196 bits (499), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 162/262 (61%), Gaps = 15/262 (5%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVKD 54
++ INGFGRIGR+V R ++ E+VA ++ KYD+VHG++ +D
Sbjct: 6 RVAINGFGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFED 65
Query: 55 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISA 114
LL K + + R+P+E+PW + G E V+E+TG F VI++A
Sbjct: 66 H--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTA 123
Query: 115 PSKDAPM-FVVGVNENEYK-PELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
P K+ + VVGVNE++ + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTVH+
Sbjct: 124 PGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAY 183
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
T QK +D P KD R RA +IIP++TGAAKA+ KVLP LNGKL GMA RVPT +VS
Sbjct: 184 TNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNVS 242
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
+VDL V +++D + + I A K
Sbjct: 243 LVDLVVDVKRDVTVEAINDAFK 264
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 196 bits (498), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 154/265 (58%), Gaps = 15/265 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R D L A+++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAGGVKQASHLLKYDSILGTFDA-DV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K D + K + V RNP +PW + G + V+E TGVF V
Sbjct: 60 KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 119
Query: 111 IISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 179
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 180 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDL V++ K +E+ AA +
Sbjct: 239 NVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 154/265 (58%), Gaps = 15/265 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R D L A+++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDA-DV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K D + K + V RNP +PW + G + V+E TGVF V
Sbjct: 60 KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 119
Query: 111 IISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 179
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 180 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDL V++ K +E+ AA +
Sbjct: 239 NVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 154/265 (58%), Gaps = 15/265 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R D L A+++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTF-DADV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K D + K + V RNP +PW + G + V+E TGVF V
Sbjct: 60 KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 119
Query: 111 IISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 179
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 180 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDL V++ K +E+ AA +
Sbjct: 239 NVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 154/265 (58%), Gaps = 15/265 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R D L A+++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDA-DV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K D + K + V RNP +PW + G + V+E TGVF V
Sbjct: 60 KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 119
Query: 111 IISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
+I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 179
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q+ +D + +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 180 HSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDL V++ K +E+ AA +
Sbjct: 239 NVSVVDLVVQVSKKTFAEEVNAAFR 263
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 158/264 (59%), Gaps = 15/264 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRD---DVELV--------ATYMFKYDSVHGQWKHHELK 51
K+K+ INGFGRIGR R +D DV ++ A+++ KYDS+ G + ++K
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDA-DVK 59
Query: 52 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 111
D + G K + V RNP +PW + G + V+E TGVF V+
Sbjct: 60 TAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 118
Query: 112 ISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
I+AP K D P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT H
Sbjct: 119 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTH 178
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
S T Q+ +D S +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT +
Sbjct: 179 SYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPN 237
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
VSVVDL V++ K +E+ AA +
Sbjct: 238 VSVVDLVVQVSKKTFAEEVNAAFR 261
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 193 bits (491), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/266 (42%), Positives = 158/266 (59%), Gaps = 18/266 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
+++ ING+GRIGR R + + D+E+VA ++ +YD+ HG++ E+
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAINDLGDAKTNAHLTQYDTAHGKFPG-EV 69
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
V D ++ G++ + V RNP E+PW E G + V+E TG FT V
Sbjct: 70 SVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKKV 128
Query: 111 IISAPS-KDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
IISAP KD +V GVN + K E ++SNASCTTNCLAPL K ++DK G+ GLMTT
Sbjct: 129 IISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMTT 188
Query: 169 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 228
+H+ T Q D +D R R+A+ + IP+ TGAA AVG VLP LNGKL G A RVPT
Sbjct: 189 IHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVPT 247
Query: 229 VDVSVVDLTVRLEKDASYDEIKAAIK 254
++VS+VDL+ ++D + E+ A +K
Sbjct: 248 INVSIVDLSFIAKRDTTAAEVNAIMK 273
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 161/262 (61%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRD-DVELV--------ATYMFKYDSVHGQWKHHELKVKD 54
+K+GINGFGRIGR V R++ R +V L+ ++ KYDS++ ++ D
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGE--VAYD 58
Query: 55 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISA 114
D+ L K + V++P+EIPWAE G V+ESTGVFT VII+A
Sbjct: 59 DQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118
Query: 115 PSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
P+K + V+GVN Y P + I+SNASCTTN LAP+ KV+ + FG+ + LMTTVHS
Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSY 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT S
Sbjct: 179 TNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGS 237
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
+ D+T L+++ + +E+ AA+K
Sbjct: 238 ISDITALLKREVTAEEVNAALK 259
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 156/264 (59%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 6 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 64
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 65 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 123
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 124 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 183
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 184 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 243
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 244 SLTELTVVLEKQDVTVEQVNEAMK 267
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 156/264 (59%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 62 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 120
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 121 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 180
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 181 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 240
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 241 SLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 156/264 (59%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 11 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 69
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 70 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 128
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 129 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 188
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 189 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 248
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 249 SLTELTVVLEKQDVTVEQVNEAMK 272
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 156/264 (59%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 63
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 64 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 122
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 182
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 183 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 242
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 243 SLTELTVVLEKQDVTVEQVNEAMK 266
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 162/262 (61%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRD-DVELV--------ATYMFKYDSVHGQWKHHELKVKD 54
+K+GINGFGRIGR V R++ +R +V L+ ++ KYDS +G++ D
Sbjct: 1 MKVGINGFGRIGRQVFRILHERGVEVALINDLTDNKTLAHLLKYDSTYGRFPG--AVGYD 58
Query: 55 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISA 114
++ L K + +++P EIPW + G VVESTGVFT VII+A
Sbjct: 59 EENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVIITA 118
Query: 115 PSKDAPMFVV-GVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
P+K+ + VV GVN +Y P + +I+SNASCTTN LAP+ KV+ FG+ + LMTTVHS
Sbjct: 119 PAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVHSY 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT S
Sbjct: 179 TNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPTGS 237
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
+ D+T L+++ + +E+ AA+K
Sbjct: 238 ISDITALLKREVTAEEVNAALK 259
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 160/262 (61%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRD-DVELV--------ATYMFKYDSVHGQWKHHELKVKD 54
+K+GINGFGRIGR V R++ R +V L+ ++ KYDS++ ++ D
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGE--VAYD 58
Query: 55 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISA 114
D+ L K + V++P+EIPWAE G V+ESTGVFT VII+A
Sbjct: 59 DQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118
Query: 115 PSKDAPM-FVVGVNENEYKPELN-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
P+K + V+GVN Y P + I+SNAS TTN LAP+ KV+ + FG+ + LMTTVHS
Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVHSY 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT S
Sbjct: 179 TNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGS 237
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
+ D+T L+++ + +E+ AA+K
Sbjct: 238 ISDITALLKREVTAEEVNAALK 259
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 156/264 (59%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 62 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 120
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 121 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINAY 180
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 181 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 240
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 241 SLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 184 bits (466), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 155/264 (58%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 62 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 120
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 121 APATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 180
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 181 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 240
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 241 SLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 183 bits (464), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/264 (42%), Positives = 155/264 (58%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 62 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 120
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 121 APATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 180
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 181 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 240
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 241 SLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 155/264 (58%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 3 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS 113
D + G K V F + ++PW + + V+E TG +T V+IS
Sbjct: 62 DGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 120
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 121 APATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINAY 180
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 181 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 240
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 241 SLTELTVVLEKQDVTVEQVNEAMK 264
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 18/240 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHELK 51
+++ INGFGRIGR R R + +L A ++ +YDSV G++
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNAD--I 60
Query: 52 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 111
D+ ++ K + + RNP +PW E + V+ESTGVF V+
Sbjct: 61 SYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 112 ISAPSKDAPM--FVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
I+AP K + +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G MTT
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 169 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 228
HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV V+P L GKL G+A RVPT
Sbjct: 181 THSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPT 239
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 143/240 (59%), Gaps = 18/240 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHELK 51
+++ INGFGRIGR R R + +L A ++ +YDSV G++
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNAD--I 60
Query: 52 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVI 111
D+ ++ K + + RNP +PW E + V+ESTGVF V+
Sbjct: 61 SYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 112 ISAPSKDAPM--FVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
I+AP K + +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G MTT
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTT 180
Query: 169 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 228
HS T Q+ +D S +D R RAA+ NI+P++TGAAKAV V+P L GKL G+A RVPT
Sbjct: 181 THSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVPT 239
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 155/265 (58%), Gaps = 15/265 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVEL------------VATYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R D L A+++ KYDS G + ++
Sbjct: 2 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDA-DV 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
K + + K + V RNP +PW E G + V+E TGVF V
Sbjct: 61 KPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKV 120
Query: 111 IISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
II+AP K D P +VVGVN + Y + I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 121 IITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 180
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 181 HSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 239
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDL V++ K +E+ AA +
Sbjct: 240 NVSVVDLVVQVSKKTFAEEVNAAFR 264
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 153/267 (57%), Gaps = 20/267 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
+++ ING+GRIGR + R + D+E+VA ++ +YD+ HG++ +
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPG-TV 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXV 110
V ++ G+K + V RNP ++PW + V+E TG FT V
Sbjct: 61 SVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKV 119
Query: 111 IISAPSK---DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
IISAP DA + V GVN K ++SNAS TTNCLAPL K ++DK G+ +GLMT
Sbjct: 120 IISAPGGADVDATV-VYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLMT 178
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
TVH+ T Q D +D R R+A+ ++IP+ TGAA AVG VLP L+GKL G A RVP
Sbjct: 179 TVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVP 237
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T++VS+VDL+ +++ + +E+ +K
Sbjct: 238 TINVSIVDLSFVAKRNTTVEEVNGILK 264
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 147/267 (55%), Gaps = 20/267 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
V++ INGFGRIGR V R + + R ++ +VA ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFA---W 59
Query: 51 KVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
+V+ ++ LF G+ + V R+ + +PW E G + V++ TGV+
Sbjct: 60 EVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKK 119
Query: 110 VIISAP-SKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
V+ S P S D VV GVN+++ + E IVSNASCTTNC+ P+ K++ D +GI G +T
Sbjct: 120 VLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 179
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T+HS Q+ +D D R RAAS +IIP T A + + P N + +A RVP
Sbjct: 180 TIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVP 238
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T++V+ +DL+V ++K +E+ ++
Sbjct: 239 TINVTAIDLSVTVKKPVKANEVNLLLQ 265
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 147/267 (55%), Gaps = 20/267 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
V++ INGFGRIGR V R + + R ++ +VA ++ KYD+ HG++
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFA---W 58
Query: 51 KVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
+V+ ++ LF G+ + V R+ + +PW E G + V++ TGV+
Sbjct: 59 EVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKK 118
Query: 110 VIISAP-SKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
V+ S P S D VV GVN+++ + E IVSNASCTTNC+ P+ K++ D +GI G +T
Sbjct: 119 VLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 178
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T+HS Q+ +D D R RAAS +IIP T A + + P N + +A RVP
Sbjct: 179 TIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVP 237
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T++V+ +DL+V ++K +E+ ++
Sbjct: 238 TINVTAIDLSVTVKKPVKANEVNLLLQ 264
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 145/267 (54%), Gaps = 20/267 (7%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
V++ INGFGRIGR V R + + R ++ +VA ++ KYD+ HG++
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFA---W 59
Query: 51 KVKDDKTLLF-GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXX 109
+V+ ++ LF G+ + V R+ + +PW E G + V++ TGV+
Sbjct: 60 EVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKK 119
Query: 110 VIISAP-SKDAPMFVV-GVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
V+ S P S D VV GVN+++ + E IVSNAS TTN + P+ K++ D +GI G +T
Sbjct: 120 VLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTVT 179
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T+HS Q+ +D D R RAAS +IIP T A + + P N + +A RVP
Sbjct: 180 TIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVP 238
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T++V+ +DL+V ++K +E+ ++
Sbjct: 239 TINVTAIDLSVTVKKPVKANEVNLLLQ 265
>pdb|2CZC|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CZC|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 334
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 24/29 (82%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31
KVK+G+NG+G IG+ VA + ++DD+EL+
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELI 30
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 118 DAPMFVVGVN--ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 175
D P+ V VN + ++ I++N +CTT P+ KV+HD+ +V ++++ +++ +
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGS 161
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 118 DAPMFVVGVN--ENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 175
D P+ V VN + ++ I++N +CTT P+ KV+HD+ +V ++++ +++ +
Sbjct: 120 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGS 179
>pdb|1CF2|P Chain P, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|R Chain R, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|O Chain O, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
pdb|1CF2|Q Chain Q, Three-Dimensional Structure Of
D-Glyceraldehyde-3-Phosphate Dehydrogenase From The
Hyperthermophilic Archaeon Methanothermus Fervidus
Length = 337
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 6 IGINGFGRIGRLVARVILQRDDVELV 31
+ ING+G +G+ VA I Q+DD++++
Sbjct: 4 VAINGYGTVGKRVADAIAQQDDMKVI 29
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYD 39
K+ ING+G IG+ VA + +DD+E++ K D
Sbjct: 4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPD 38
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 198 IPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
+PS G V V+P GK+ A VPT + + L V ++ D S D+I AIK
Sbjct: 194 VPSHHGPD--VVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIK 248
>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
And The Inhibitor 5s-Isoxazoline
pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate
Dehydrogenase Nadph-l-2-amino-6-methylene- Pimelate
pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
Length = 320
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATY 34
M +++ I G+G +GR V ++I ++ D++LV +
Sbjct: 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIF 34
>pdb|1B7G|O Chain O, Glyceraldehyde 3-phosphate Dehydrogenase
pdb|1B7G|Q Chain Q, Glyceraldehyde 3-phosphate Dehydrogenase
Length = 340
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELV 31
V + +NG+G IG+ VA I+++ D++LV
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLV 29
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 137 IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
I++N +C+T C K I DKFG+ + T +++
Sbjct: 151 IITNPNCSTICAVITLKPIXDKFGLEAVFIATXQAVS 187
>pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2QZ9|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii From Vibrio Cholerae
pdb|2R00|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
pdb|2R00|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Ii Complexed With Asa From Vibrio Cholerae
Length = 336
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 118 DAPMFVVGVNEN---EYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA 174
D P+ V VN E++ NI++N +C+T + K I+D GI +TT S++
Sbjct: 104 DIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSG 162
Query: 175 ------------TQKTVDGPSSKDWRGGRAASFNIIPS 200
T K ++G ++ + +FN IP
Sbjct: 163 AGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQ 200
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 120 PMFV------VGVNENEYKPELNIVSNASCTTNCLAPLAKVI----HDKFGIVEGLMTTV 169
PMF+ +GVNE+ Y + I S SC + P + + H ++ L T
Sbjct: 95 PMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANLAKHSSVPVINALCDTF 154
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTG 203
H + Q D + + ++A+ PSS G
Sbjct: 155 HPL---QAIADFLTIHESFASQSATHGTHPSSLG 185
>pdb|2XZA|H Chain H, Crystal Structure Of Recombinant A.17 Antibody Fab
Fragment
pdb|2XZC|H Chain H, Crystal Structure Of Phosphonate-Modified Recombinant A.17
Antibody Fab Fragment
Length = 222
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 124 VGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD--G 181
V ++N++ +L+ V+ A A L + H+ +G +TTV S + +V
Sbjct: 72 VDTSKNQFSLKLSSVTAADTAVYYCAGLTQSSHNDANWGQGTLTTVSSASTKGPSVFPLA 131
Query: 182 PSSKDWRGGRAA 193
PSSK GG AA
Sbjct: 132 PSSKSTSGGTAA 143
>pdb|3BNK|A Chain A, X-Ray Crystal Structure Of Flavoredoxin From
Methanosarcina Acetivorans
pdb|3BNK|B Chain B, X-Ray Crystal Structure Of Flavoredoxin From
Methanosarcina Acetivorans
Length = 196
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 112 ISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIH--DKFGIVEG 164
+S + + PM VGVN++ Y PE I N S + N P + ++ D G+V G
Sbjct: 37 VSRVNANPPMLGVGVNKSHYTPE-GIAENGSFSVN--FPYSGMVKKTDYCGLVSG 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,129,465
Number of Sequences: 62578
Number of extensions: 270550
Number of successful extensions: 931
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 88
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)