Query 025368
Match_columns 254
No_of_seqs 161 out of 1526
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:06:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15425 gapA glyceraldehyde-3 100.0 1.1E-52 2.5E-57 365.7 26.6 249 3-254 2-261 (331)
2 PTZ00023 glyceraldehyde-3-phos 100.0 2.1E-52 4.6E-57 364.8 26.7 251 1-254 1-265 (337)
3 PLN02358 glyceraldehyde-3-phos 100.0 3.5E-52 7.6E-57 364.8 27.2 251 3-254 5-267 (338)
4 PLN02272 glyceraldehyde-3-phos 100.0 3.4E-51 7.4E-56 363.9 27.0 250 3-254 85-346 (421)
5 PLN03096 glyceraldehyde-3-phos 100.0 3.3E-51 7E-56 362.4 26.0 250 3-254 60-322 (395)
6 PRK07403 glyceraldehyde-3-phos 100.0 4.7E-51 1E-55 356.0 25.3 249 3-254 1-264 (337)
7 PRK08955 glyceraldehyde-3-phos 100.0 1.7E-50 3.6E-55 353.7 25.2 247 3-254 2-262 (334)
8 TIGR01534 GAPDH-I glyceraldehy 100.0 2.3E-50 5.1E-55 351.8 25.6 248 5-254 1-262 (327)
9 PTZ00434 cytosolic glyceraldeh 100.0 1.8E-49 3.9E-54 345.7 26.3 252 1-254 1-279 (361)
10 PRK07729 glyceraldehyde-3-phos 100.0 2.4E-49 5.3E-54 345.5 25.7 249 3-254 2-262 (343)
11 PRK13535 erythrose 4-phosphate 100.0 2E-49 4.4E-54 346.7 24.7 249 3-254 1-264 (336)
12 PLN02237 glyceraldehyde-3-phos 100.0 5E-49 1.1E-53 350.4 25.3 250 3-254 75-340 (442)
13 TIGR01532 E4PD_g-proteo D-eryt 100.0 2.5E-47 5.4E-52 333.5 25.1 247 5-254 1-262 (325)
14 PTZ00353 glycosomal glyceralde 100.0 6.7E-47 1.4E-51 330.1 25.2 249 4-254 3-265 (342)
15 COG0057 GapA Glyceraldehyde-3- 100.0 1.5E-46 3.2E-51 321.5 24.2 249 3-254 1-262 (335)
16 PRK08289 glyceraldehyde-3-phos 100.0 1.5E-46 3.2E-51 335.2 24.8 250 3-254 127-399 (477)
17 PRK08040 putative semialdehyde 100.0 1.8E-45 4E-50 323.1 22.7 232 2-254 3-265 (336)
18 PRK06728 aspartate-semialdehyd 100.0 4E-44 8.6E-49 314.7 21.3 235 3-254 5-274 (347)
19 COG0002 ArgC Acetylglutamate s 100.0 1.2E-44 2.7E-49 311.7 16.1 237 3-254 2-267 (349)
20 PRK05671 aspartate-semialdehyd 100.0 1.4E-43 3.1E-48 312.0 20.5 234 1-254 1-266 (336)
21 PRK14874 aspartate-semialdehyd 100.0 1.3E-42 2.8E-47 307.4 19.9 230 3-254 1-266 (334)
22 PRK06598 aspartate-semialdehyd 100.0 1.3E-42 2.8E-47 306.7 19.6 235 4-254 2-297 (369)
23 PLN02383 aspartate semialdehyd 100.0 2.7E-42 5.8E-47 305.0 18.9 232 3-254 7-274 (344)
24 PRK06901 aspartate-semialdehyd 100.0 3.4E-41 7.3E-46 290.2 21.6 230 1-254 1-251 (322)
25 TIGR01851 argC_other N-acetyl- 100.0 2.2E-41 4.8E-46 291.9 16.9 215 4-254 2-234 (310)
26 PRK11863 N-acetyl-gamma-glutam 100.0 2.5E-41 5.4E-46 293.5 17.2 217 2-254 1-233 (313)
27 TIGR01296 asd_B aspartate-semi 100.0 5.8E-41 1.2E-45 296.8 19.4 230 5-254 1-269 (339)
28 TIGR01745 asd_gamma aspartate- 100.0 9.5E-41 2.1E-45 293.9 19.4 234 4-254 1-295 (366)
29 COG0136 Asd Aspartate-semialde 100.0 1.2E-40 2.6E-45 287.3 19.2 233 3-253 1-265 (334)
30 TIGR01850 argC N-acetyl-gamma- 100.0 1.3E-39 2.7E-44 289.3 18.1 232 4-254 1-264 (346)
31 PRK08664 aspartate-semialdehyd 100.0 1.9E-38 4.1E-43 282.5 19.1 235 1-254 1-264 (349)
32 PRK00436 argC N-acetyl-gamma-g 100.0 2.6E-38 5.6E-43 280.8 19.3 235 3-254 2-261 (343)
33 TIGR00978 asd_EA aspartate-sem 100.0 6E-38 1.3E-42 278.5 20.5 231 4-254 1-261 (341)
34 PLN02968 Probable N-acetyl-gam 100.0 3.2E-38 7E-43 282.3 17.2 231 3-254 38-299 (381)
35 PRK04207 glyceraldehyde-3-phos 100.0 1.1E-32 2.4E-37 244.2 21.3 228 3-254 1-242 (341)
36 TIGR01546 GAPDH-II_archae glyc 100.0 4E-30 8.6E-35 224.8 20.5 221 6-254 1-239 (333)
37 KOG4354 N-acetyl-gamma-glutamy 100.0 1E-29 2.3E-34 207.5 9.1 229 3-254 19-259 (340)
38 KOG0657 Glyceraldehyde 3-phosp 100.0 1.7E-29 3.7E-34 209.8 10.2 219 33-254 27-245 (285)
39 PF00044 Gp_dh_N: Glyceraldehy 99.9 9.8E-27 2.1E-31 182.4 10.6 138 4-143 1-151 (151)
40 KOG4777 Aspartate-semialdehyde 99.9 1.9E-26 4.1E-31 189.8 8.5 232 1-253 1-273 (361)
41 smart00846 Gp_dh_N Glyceraldeh 99.9 7.1E-24 1.5E-28 166.4 14.9 138 4-143 1-149 (149)
42 PF01118 Semialdhyde_dh: Semia 99.7 1.3E-18 2.7E-23 132.5 3.9 116 5-133 1-120 (121)
43 PF02800 Gp_dh_C: Glyceraldehy 99.7 3.2E-17 6.9E-22 129.8 10.9 106 148-254 1-106 (157)
44 PRK08300 acetaldehyde dehydrog 99.6 3.9E-16 8.5E-21 134.9 8.1 152 1-173 2-160 (302)
45 PF02774 Semialdhyde_dhC: Semi 99.5 9.4E-15 2E-19 119.1 7.0 102 152-253 1-129 (184)
46 TIGR03215 ac_ald_DH_ac acetald 99.4 6.2E-13 1.3E-17 114.7 10.5 152 3-174 1-155 (285)
47 COG0289 DapB Dihydrodipicolina 99.1 1.7E-09 3.8E-14 91.0 11.7 205 3-237 2-220 (266)
48 smart00859 Semialdhyde_dh Semi 99.0 5.2E-10 1.1E-14 85.0 7.0 112 5-132 1-121 (122)
49 TIGR00036 dapB dihydrodipicoli 98.8 2.3E-08 4.9E-13 86.1 10.1 204 4-234 2-218 (266)
50 TIGR01921 DAP-DH diaminopimela 98.7 4.1E-08 8.8E-13 86.1 7.1 86 1-108 1-86 (324)
51 PRK00048 dihydrodipicolinate r 98.7 7.7E-08 1.7E-12 82.5 8.0 197 3-235 1-209 (257)
52 PF01113 DapB_N: Dihydrodipico 98.6 7.7E-09 1.7E-13 78.8 1.2 98 4-115 1-101 (124)
53 PRK13303 L-aspartate dehydroge 98.5 1.5E-07 3.2E-12 81.1 5.9 92 3-113 1-92 (265)
54 PRK13301 putative L-aspartate 98.4 2.9E-07 6.2E-12 78.3 4.9 90 3-113 2-93 (267)
55 COG1712 Predicted dinucleotide 98.4 4.1E-07 8.9E-12 74.9 5.1 90 4-113 1-91 (255)
56 PRK13302 putative L-aspartate 98.3 5.8E-07 1.3E-11 77.6 5.0 94 1-113 4-98 (271)
57 PRK13304 L-aspartate dehydroge 98.2 3.4E-06 7.3E-11 72.7 5.7 90 4-113 2-92 (265)
58 COG4569 MhpF Acetaldehyde dehy 98.1 3E-06 6.5E-11 68.7 4.2 135 3-157 4-144 (310)
59 PLN02775 Probable dihydrodipic 98.0 5.8E-05 1.3E-09 65.1 10.3 122 3-145 11-138 (286)
60 KOG4039 Serine/threonine kinas 97.9 4.3E-05 9.3E-10 61.0 7.6 97 1-112 16-128 (238)
61 PF01408 GFO_IDH_MocA: Oxidore 97.9 9.7E-06 2.1E-10 60.8 3.1 86 4-107 1-87 (120)
62 PRK06349 homoserine dehydrogen 97.9 2.5E-05 5.4E-10 71.8 6.1 92 1-113 1-102 (426)
63 PRK11579 putative oxidoreducta 97.8 6.1E-05 1.3E-09 67.3 6.5 87 1-107 1-89 (346)
64 PRK06270 homoserine dehydrogen 97.6 0.00011 2.5E-09 65.5 6.2 103 3-114 2-124 (341)
65 TIGR02130 dapB_plant dihydrodi 97.5 0.00024 5.3E-09 61.0 6.0 118 4-145 1-127 (275)
66 PF03447 NAD_binding_3: Homose 97.5 3.3E-05 7.1E-10 58.0 0.4 81 10-108 1-85 (117)
67 COG0673 MviM Predicted dehydro 97.5 0.00012 2.5E-09 65.0 3.9 90 1-107 1-92 (342)
68 PF10727 Rossmann-like: Rossma 97.5 8.2E-05 1.8E-09 56.8 2.5 82 3-105 10-91 (127)
69 COG1748 LYS9 Saccharopine dehy 97.3 0.0015 3.3E-08 58.9 9.1 122 3-144 1-124 (389)
70 COG0460 ThrA Homoserine dehydr 97.3 0.0011 2.3E-08 58.5 7.5 95 1-115 1-113 (333)
71 PRK06813 homoserine dehydrogen 97.2 0.00067 1.5E-08 60.5 5.8 101 3-115 2-122 (346)
72 PRK06392 homoserine dehydrogen 97.2 0.001 2.2E-08 59.0 6.8 96 4-114 1-115 (326)
73 PF02629 CoA_binding: CoA bind 97.0 0.00095 2.1E-08 48.3 4.2 90 3-112 3-92 (96)
74 PTZ00431 pyrroline carboxylate 97.0 0.0012 2.7E-08 56.6 5.6 79 1-104 1-79 (260)
75 COG2344 AT-rich DNA-binding pr 97.0 0.0009 1.9E-08 53.9 4.3 91 3-111 84-175 (211)
76 PRK08374 homoserine dehydrogen 97.0 0.00074 1.6E-08 60.2 4.3 100 3-108 2-117 (336)
77 PRK10206 putative oxidoreducta 97.0 0.001 2.2E-08 59.5 4.7 91 3-112 1-93 (344)
78 PF13460 NAD_binding_10: NADH( 96.9 0.00097 2.1E-08 53.5 3.8 90 6-115 1-99 (183)
79 CHL00194 ycf39 Ycf39; Provisio 96.9 0.0031 6.7E-08 55.5 7.0 92 5-114 2-110 (317)
80 PF05368 NmrA: NmrA-like famil 96.8 0.00038 8.2E-09 58.4 0.9 96 6-115 1-103 (233)
81 COG2910 Putative NADH-flavin r 96.8 0.0071 1.5E-07 48.8 7.8 30 4-34 1-31 (211)
82 PLN02819 lysine-ketoglutarate 96.8 0.0012 2.5E-08 66.5 4.2 99 3-113 569-679 (1042)
83 PRK07634 pyrroline-5-carboxyla 96.8 0.0012 2.6E-08 55.8 3.8 84 1-103 1-87 (245)
84 PF03807 F420_oxidored: NADP o 96.8 0.00087 1.9E-08 48.1 2.1 88 5-113 1-92 (96)
85 PRK05472 redox-sensing transcr 96.7 0.0046 1E-07 51.4 6.6 92 3-112 84-176 (213)
86 PRK11880 pyrroline-5-carboxyla 96.6 0.0026 5.6E-08 54.6 4.5 82 3-104 2-84 (267)
87 COG3804 Uncharacterized conser 96.4 0.018 3.9E-07 49.4 8.0 35 3-37 2-36 (350)
88 PF03435 Saccharop_dh: Sacchar 96.3 0.0042 9E-08 56.3 3.9 95 6-110 1-95 (386)
89 PLN02700 homoserine dehydrogen 96.3 0.0046 9.9E-08 55.7 3.9 31 83-115 110-140 (377)
90 TIGR03649 ergot_EASG ergot alk 96.1 0.013 2.8E-07 50.6 6.1 91 5-114 1-105 (285)
91 PRK12491 pyrroline-5-carboxyla 96.1 0.0096 2.1E-07 51.5 5.1 84 1-103 1-84 (272)
92 PRK07679 pyrroline-5-carboxyla 96.1 0.0066 1.4E-07 52.6 4.0 83 1-103 1-86 (279)
93 PRK05447 1-deoxy-D-xylulose 5- 95.9 0.018 3.9E-07 51.9 6.0 104 4-108 2-117 (385)
94 COG2085 Predicted dinucleotide 95.9 0.012 2.7E-07 48.5 4.5 90 3-114 1-92 (211)
95 PRK08229 2-dehydropantoate 2-r 95.9 0.037 8.1E-07 49.1 7.9 29 3-32 2-30 (341)
96 PRK07502 cyclohexadienyl dehyd 95.7 0.014 3.1E-07 51.1 4.5 25 2-26 5-29 (307)
97 COG0287 TyrA Prephenate dehydr 95.7 0.022 4.7E-07 49.5 5.3 86 2-107 2-92 (279)
98 PF13380 CoA_binding_2: CoA bi 95.6 0.053 1.2E-06 40.6 6.7 81 4-112 1-85 (116)
99 PRK06928 pyrroline-5-carboxyla 95.6 0.0071 1.5E-07 52.4 2.1 81 4-103 2-85 (277)
100 COG4091 Predicted homoserine d 95.6 0.024 5.1E-07 50.2 5.2 100 3-107 17-127 (438)
101 PLN02256 arogenate dehydrogena 95.5 0.02 4.3E-07 50.3 4.7 79 1-102 34-112 (304)
102 PRK06249 2-dehydropantoate 2-r 95.5 0.086 1.9E-06 46.4 8.7 31 1-32 3-33 (313)
103 PRK08818 prephenate dehydrogen 95.4 0.03 6.5E-07 50.5 5.6 69 3-104 4-73 (370)
104 PRK06223 malate dehydrogenase; 95.4 0.042 9.1E-07 48.2 6.5 30 3-32 2-31 (307)
105 TIGR01761 thiaz-red thiazoliny 95.3 0.027 5.8E-07 50.3 4.6 84 3-107 3-91 (343)
106 TIGR02717 AcCoA-syn-alpha acet 95.2 0.074 1.6E-06 49.3 7.6 85 3-115 7-99 (447)
107 PRK07417 arogenate dehydrogena 95.2 0.027 5.9E-07 48.7 4.4 78 5-104 2-79 (279)
108 PTZ00325 malate dehydrogenase; 95.1 0.17 3.6E-06 44.9 9.3 24 3-26 8-32 (321)
109 PLN02688 pyrroline-5-carboxyla 95.1 0.016 3.4E-07 49.7 2.7 23 4-26 1-23 (266)
110 PLN02657 3,8-divinyl protochlo 95.1 0.089 1.9E-06 47.9 7.6 30 3-33 60-90 (390)
111 PRK00094 gpsA NAD(P)H-dependen 95.0 0.022 4.7E-07 50.1 3.3 26 4-30 2-27 (325)
112 cd05294 LDH-like_MDH_nadp A la 94.9 0.13 2.8E-06 45.4 7.8 30 4-33 1-32 (309)
113 PLN02602 lactate dehydrogenase 94.8 0.11 2.4E-06 46.5 7.5 25 4-28 38-62 (350)
114 PRK06476 pyrroline-5-carboxyla 94.8 0.023 5E-07 48.5 3.0 22 5-26 2-23 (258)
115 PTZ00117 malate dehydrogenase; 94.6 0.19 4E-06 44.5 8.1 24 3-26 5-28 (319)
116 PRK05678 succinyl-CoA syntheta 94.5 0.16 3.5E-06 44.3 7.5 87 3-115 8-100 (291)
117 PRK14619 NAD(P)H-dependent gly 94.5 0.097 2.1E-06 46.0 6.3 64 3-102 4-67 (308)
118 PLN02695 GDP-D-mannose-3',5'-e 94.5 0.16 3.5E-06 45.8 7.8 31 3-34 21-52 (370)
119 PTZ00082 L-lactate dehydrogena 94.5 0.057 1.2E-06 47.8 4.7 26 4-29 7-32 (321)
120 TIGR01915 npdG NADPH-dependent 94.4 0.041 8.9E-07 45.9 3.4 27 4-31 1-28 (219)
121 PRK07680 late competence prote 94.4 0.016 3.5E-07 50.0 0.9 80 5-103 2-83 (273)
122 PRK09466 metL bifunctional asp 94.4 0.036 7.8E-07 55.0 3.4 103 1-115 456-572 (810)
123 PRK09436 thrA bifunctional asp 94.3 0.08 1.7E-06 52.8 5.7 32 82-115 547-578 (819)
124 PF01073 3Beta_HSD: 3-beta hyd 94.3 0.19 4.1E-06 43.6 7.4 20 8-27 2-22 (280)
125 cd05293 LDH_1 A subgroup of L- 94.2 0.16 3.5E-06 44.8 6.9 25 3-27 3-27 (312)
126 KOG1502 Flavonol reductase/cin 94.2 0.071 1.5E-06 47.1 4.6 80 3-92 6-88 (327)
127 PRK06444 prephenate dehydrogen 94.2 0.11 2.4E-06 42.7 5.4 22 4-25 1-23 (197)
128 PLN02166 dTDP-glucose 4,6-dehy 94.1 0.27 6E-06 45.4 8.4 29 4-33 121-150 (436)
129 cd05290 LDH_3 A subgroup of L- 94.1 0.18 3.8E-06 44.5 6.8 24 5-28 1-24 (307)
130 PLN00016 RNA-binding protein; 94.0 0.13 2.8E-06 46.4 6.2 102 3-112 52-162 (378)
131 PRK08507 prephenate dehydrogen 94.0 0.06 1.3E-06 46.4 3.7 77 5-103 2-79 (275)
132 PRK00066 ldh L-lactate dehydro 93.9 0.35 7.7E-06 42.7 8.6 25 4-28 7-31 (315)
133 PLN00106 malate dehydrogenase 93.9 0.35 7.5E-06 42.9 8.4 26 3-28 18-44 (323)
134 PF00056 Ldh_1_N: lactate/mala 93.9 0.036 7.9E-07 43.0 1.9 25 4-28 1-26 (141)
135 PRK05479 ketol-acid reductoiso 93.8 0.11 2.4E-06 46.2 4.9 28 3-31 17-44 (330)
136 PLN02214 cinnamoyl-CoA reducta 93.7 0.21 4.4E-06 44.5 6.8 30 3-33 10-40 (342)
137 PRK15469 ghrA bifunctional gly 93.6 0.12 2.6E-06 45.6 5.0 28 4-32 137-164 (312)
138 PF01210 NAD_Gly3P_dh_N: NAD-d 93.6 0.11 2.3E-06 41.0 4.2 89 5-107 1-97 (157)
139 PRK11199 tyrA bifunctional cho 93.5 0.14 3.1E-06 46.3 5.5 72 3-112 98-172 (374)
140 COG0345 ProC Pyrroline-5-carbo 93.5 0.083 1.8E-06 45.4 3.6 133 4-156 2-149 (266)
141 PLN02206 UDP-glucuronate decar 93.4 0.4 8.6E-06 44.4 8.3 29 4-33 120-149 (442)
142 TIGR01019 sucCoAalpha succinyl 93.4 0.35 7.6E-06 42.1 7.5 89 4-115 7-98 (286)
143 PRK09414 glutamate dehydrogena 93.4 0.38 8.2E-06 44.5 8.0 95 3-112 232-341 (445)
144 PRK06522 2-dehydropantoate 2-r 93.2 0.26 5.7E-06 42.7 6.5 86 4-103 1-87 (304)
145 PRK05086 malate dehydrogenase; 93.2 0.7 1.5E-05 40.8 9.1 21 4-24 1-22 (312)
146 COG0240 GpsA Glycerol-3-phosph 93.2 0.098 2.1E-06 46.2 3.7 91 4-107 2-99 (329)
147 PRK14618 NAD(P)H-dependent gly 93.2 0.1 2.2E-06 46.3 3.8 28 3-31 4-31 (328)
148 cd05292 LDH_2 A subgroup of L- 93.1 0.16 3.5E-06 44.6 5.1 22 5-26 2-23 (308)
149 PRK05808 3-hydroxybutyryl-CoA 93.1 0.14 3.1E-06 44.3 4.6 31 1-32 1-31 (282)
150 COG0111 SerA Phosphoglycerate 93.1 0.11 2.5E-06 46.0 4.0 29 4-33 143-171 (324)
151 cd01065 NAD_bind_Shikimate_DH 93.1 0.14 3.1E-06 39.7 4.2 24 3-26 19-42 (155)
152 PRK08618 ornithine cyclodeamin 92.9 0.094 2E-06 46.5 3.3 88 4-107 128-215 (325)
153 PRK11064 wecC UDP-N-acetyl-D-m 92.8 0.16 3.4E-06 46.7 4.6 32 1-33 1-32 (415)
154 PF02670 DXP_reductoisom: 1-de 92.8 0.22 4.7E-06 38.1 4.5 31 6-36 1-33 (129)
155 PRK12921 2-dehydropantoate 2-r 92.7 0.41 9E-06 41.6 7.0 28 4-32 1-28 (305)
156 PLN02712 arogenate dehydrogena 92.7 0.2 4.3E-06 48.8 5.4 78 3-103 369-446 (667)
157 PF01488 Shikimate_DH: Shikima 92.7 0.06 1.3E-06 41.3 1.5 77 3-95 12-88 (135)
158 COG0039 Mdh Malate/lactate deh 92.6 0.46 1E-05 41.8 7.0 23 4-26 1-23 (313)
159 TIGR00465 ilvC ketol-acid redu 92.5 0.22 4.7E-06 44.0 4.9 27 3-30 3-29 (314)
160 PF03446 NAD_binding_2: NAD bi 92.4 0.21 4.5E-06 39.6 4.3 69 3-94 1-69 (163)
161 cd05213 NAD_bind_Glutamyl_tRNA 92.2 0.21 4.6E-06 44.0 4.6 33 3-36 178-210 (311)
162 TIGR03466 HpnA hopanoid-associ 92.2 0.65 1.4E-05 40.4 7.6 29 5-34 2-31 (328)
163 COG5322 Predicted dehydrogenas 92.1 0.84 1.8E-05 39.3 7.6 23 4-26 168-191 (351)
164 TIGR00243 Dxr 1-deoxy-D-xylulo 92.0 0.22 4.8E-06 44.9 4.4 33 4-36 2-36 (389)
165 PRK06545 prephenate dehydrogen 92.0 0.14 3.1E-06 46.0 3.3 81 5-104 2-82 (359)
166 PF02826 2-Hacid_dh_C: D-isome 91.7 0.29 6.4E-06 39.3 4.5 29 4-33 37-65 (178)
167 PF03721 UDPG_MGDP_dh_N: UDP-g 91.7 0.22 4.9E-06 40.4 3.8 29 4-33 1-29 (185)
168 PRK11908 NAD-dependent epimera 91.5 0.28 6.1E-06 43.5 4.6 31 4-34 2-33 (347)
169 PRK12439 NAD(P)H-dependent gly 91.3 0.26 5.5E-06 44.0 4.1 24 3-26 7-30 (341)
170 PRK08219 short chain dehydroge 91.2 0.31 6.7E-06 40.0 4.3 31 1-33 1-32 (227)
171 COG1893 ApbA Ketopantoate redu 91.2 0.82 1.8E-05 40.2 7.1 87 4-104 1-89 (307)
172 PRK08306 dipicolinate synthase 91.1 0.28 6E-06 43.0 4.1 28 4-32 153-180 (296)
173 PLN00203 glutamyl-tRNA reducta 91.0 0.28 6.1E-06 46.3 4.2 85 3-103 266-353 (519)
174 PRK14106 murD UDP-N-acetylmura 90.9 0.57 1.2E-05 43.2 6.1 89 3-107 5-93 (450)
175 PLN02696 1-deoxy-D-xylulose-5- 90.8 0.34 7.3E-06 44.7 4.4 34 3-36 57-92 (454)
176 PRK06719 precorrin-2 dehydroge 90.7 1.8 3.9E-05 34.1 7.9 29 4-33 14-42 (157)
177 PRK05865 hypothetical protein; 90.6 1 2.2E-05 45.1 7.8 28 5-33 2-30 (854)
178 PRK12320 hypothetical protein; 90.5 1.2 2.5E-05 43.7 8.0 28 5-33 2-30 (699)
179 cd01337 MDH_glyoxysomal_mitoch 90.4 1.6 3.5E-05 38.5 8.2 23 4-26 1-24 (310)
180 PRK06035 3-hydroxyacyl-CoA deh 90.4 0.46 1E-05 41.3 4.8 31 1-32 1-31 (291)
181 cd01076 NAD_bind_1_Glu_DH NAD( 90.3 0.54 1.2E-05 39.5 4.9 32 2-34 30-61 (227)
182 TIGR02853 spore_dpaA dipicolin 90.3 0.23 5E-06 43.3 2.8 27 4-31 152-178 (287)
183 PRK06046 alanine dehydrogenase 90.3 0.23 5E-06 44.1 2.8 88 4-107 130-217 (326)
184 PF00070 Pyr_redox: Pyridine n 90.3 0.7 1.5E-05 31.7 4.7 28 5-33 1-28 (80)
185 PRK05708 2-dehydropantoate 2-r 90.2 1.5 3.3E-05 38.4 8.0 30 3-33 2-31 (305)
186 PRK15181 Vi polysaccharide bio 90.2 0.44 9.6E-06 42.4 4.6 32 1-33 13-45 (348)
187 PRK08655 prephenate dehydrogen 90.2 0.48 1E-05 43.8 4.9 84 5-112 2-89 (437)
188 PRK06718 precorrin-2 dehydroge 90.0 3.3 7.1E-05 34.1 9.3 29 3-32 10-38 (202)
189 TIGR02371 ala_DH_arch alanine 90.0 0.24 5.3E-06 43.9 2.8 96 4-115 129-224 (325)
190 PRK08293 3-hydroxybutyryl-CoA 90.0 0.52 1.1E-05 40.9 4.8 31 1-32 1-31 (287)
191 TIGR01470 cysG_Nterm siroheme 89.7 5 0.00011 33.1 10.1 90 4-115 10-101 (205)
192 cd01487 E1_ThiF_like E1_ThiF_l 89.7 1.4 3E-05 35.4 6.6 22 5-26 1-22 (174)
193 PRK07236 hypothetical protein; 89.4 0.55 1.2E-05 42.4 4.6 32 1-33 4-35 (386)
194 PRK11559 garR tartronate semia 89.4 0.53 1.1E-05 40.9 4.3 29 1-31 1-29 (296)
195 PRK13403 ketol-acid reductoiso 89.3 0.69 1.5E-05 41.0 4.9 72 4-99 17-88 (335)
196 cd00300 LDH_like L-lactate deh 89.2 0.88 1.9E-05 39.8 5.6 22 6-27 1-22 (300)
197 PF02737 3HCDH_N: 3-hydroxyacy 89.0 0.69 1.5E-05 37.3 4.4 28 5-33 1-28 (180)
198 PLN02545 3-hydroxybutyryl-CoA 88.9 0.71 1.5E-05 40.2 4.8 31 1-32 1-32 (295)
199 PTZ00345 glycerol-3-phosphate 88.9 0.79 1.7E-05 41.4 5.2 24 3-26 11-34 (365)
200 PRK01438 murD UDP-N-acetylmura 88.7 1.4 3.1E-05 41.0 7.0 91 3-112 16-106 (480)
201 KOG1494 NAD-dependent malate d 88.7 0.37 8E-06 41.6 2.7 34 3-36 28-62 (345)
202 cd01338 MDH_choloroplast_like 88.6 1.4 3E-05 39.1 6.5 24 3-26 2-26 (322)
203 cd05291 HicDH_like L-2-hydroxy 88.5 0.69 1.5E-05 40.6 4.4 23 5-27 2-24 (306)
204 PRK07530 3-hydroxybutyryl-CoA 88.4 0.8 1.7E-05 39.8 4.8 30 2-32 3-32 (292)
205 TIGR00715 precor6x_red precorr 88.2 1.3 2.9E-05 37.9 5.9 88 4-108 1-94 (256)
206 PRK00683 murD UDP-N-acetylmura 88.1 1.4 3E-05 40.4 6.4 85 1-108 1-85 (418)
207 PLN02427 UDP-apiose/xylose syn 88.1 0.78 1.7E-05 41.4 4.7 31 3-33 14-45 (386)
208 PLN02353 probable UDP-glucose 88.0 0.8 1.7E-05 42.8 4.7 30 4-33 2-32 (473)
209 cd05211 NAD_bind_Glu_Leu_Phe_V 87.7 1.1 2.4E-05 37.4 5.0 32 2-34 22-53 (217)
210 PF02558 ApbA: Ketopantoate re 87.6 1.2 2.6E-05 34.4 4.9 85 6-102 1-87 (151)
211 COG1252 Ndh NADH dehydrogenase 87.6 0.87 1.9E-05 41.6 4.6 33 1-33 1-34 (405)
212 TIGR01777 yfcH conserved hypot 87.6 3.2 7E-05 35.3 8.0 28 6-34 1-29 (292)
213 PRK14194 bifunctional 5,10-met 87.5 1.9 4.1E-05 37.8 6.4 27 4-31 160-187 (301)
214 COG0373 HemA Glutamyl-tRNA red 87.4 0.78 1.7E-05 42.0 4.2 85 4-107 179-266 (414)
215 PRK04690 murD UDP-N-acetylmura 87.4 2 4.4E-05 40.0 7.1 90 3-112 8-97 (468)
216 PRK05476 S-adenosyl-L-homocyst 87.3 0.69 1.5E-05 42.6 3.8 27 4-31 213-239 (425)
217 PRK06130 3-hydroxybutyryl-CoA 87.3 1 2.2E-05 39.4 4.8 31 1-32 1-32 (311)
218 TIGR03376 glycerol3P_DH glycer 87.0 0.35 7.6E-06 43.2 1.7 21 5-25 1-21 (342)
219 PRK06487 glycerate dehydrogena 86.9 0.91 2E-05 40.1 4.3 28 4-32 149-176 (317)
220 TIGR01772 MDH_euk_gproteo mala 86.8 3.6 7.7E-05 36.4 7.9 23 5-27 1-24 (312)
221 COG0743 Dxr 1-deoxy-D-xylulose 86.8 0.93 2E-05 40.5 4.2 33 3-35 1-35 (385)
222 cd00704 MDH Malate dehydrogena 86.8 1.7 3.8E-05 38.5 6.0 25 4-28 1-26 (323)
223 KOG2741 Dimeric dihydrodiol de 86.7 0.92 2E-05 40.3 4.0 90 3-107 6-97 (351)
224 PRK05653 fabG 3-ketoacyl-(acyl 86.7 1.2 2.7E-05 36.6 4.8 27 3-30 5-32 (246)
225 PRK12825 fabG 3-ketoacyl-(acyl 86.1 0.9 1.9E-05 37.5 3.7 29 1-30 4-33 (249)
226 PLN00112 malate dehydrogenase 86.1 2.1 4.5E-05 39.7 6.2 23 3-25 100-123 (444)
227 PRK08291 ectoine utilization p 86.0 0.73 1.6E-05 40.9 3.2 88 4-107 133-221 (330)
228 PRK06129 3-hydroxyacyl-CoA deh 85.9 1.2 2.6E-05 39.0 4.5 28 4-32 3-30 (308)
229 PRK08410 2-hydroxyacid dehydro 85.8 1.1 2.4E-05 39.4 4.3 28 4-32 146-173 (311)
230 PRK15409 bifunctional glyoxyla 85.8 1.2 2.5E-05 39.6 4.3 27 4-31 146-173 (323)
231 PRK06932 glycerate dehydrogena 85.7 1.2 2.5E-05 39.4 4.3 28 4-32 148-175 (314)
232 PRK07819 3-hydroxybutyryl-CoA 85.5 1.2 2.7E-05 38.7 4.3 29 3-32 5-33 (286)
233 COG4529 Uncharacterized protei 85.5 1.2 2.7E-05 41.2 4.4 28 3-30 1-28 (474)
234 PF04321 RmlD_sub_bind: RmlD s 85.5 1.1 2.4E-05 38.8 4.0 29 4-33 1-30 (286)
235 PRK07574 formate dehydrogenase 85.4 1.2 2.6E-05 40.5 4.3 28 4-32 193-220 (385)
236 PRK14806 bifunctional cyclohex 85.4 1 2.3E-05 44.4 4.2 23 4-26 4-26 (735)
237 cd00650 LDH_MDH_like NAD-depen 84.9 2.1 4.5E-05 36.7 5.4 21 6-26 1-22 (263)
238 TIGR02992 ectoine_eutC ectoine 84.9 0.79 1.7E-05 40.7 2.9 89 4-107 130-218 (326)
239 PLN00198 anthocyanidin reducta 84.9 1.6 3.4E-05 38.5 4.8 32 1-33 7-39 (338)
240 PRK12480 D-lactate dehydrogena 84.7 1.4 3E-05 39.2 4.4 28 4-32 147-174 (330)
241 TIGR01759 MalateDH-SF1 malate 84.7 2.4 5.2E-05 37.6 5.8 24 3-26 3-27 (323)
242 PLN02240 UDP-glucose 4-epimera 84.6 1.6 3.4E-05 38.6 4.7 30 3-33 5-35 (352)
243 PRK04308 murD UDP-N-acetylmura 84.5 5.6 0.00012 36.7 8.4 86 3-107 5-92 (445)
244 PRK05442 malate dehydrogenase; 84.4 2.2 4.8E-05 37.9 5.5 24 3-26 4-28 (326)
245 PRK15438 erythronate-4-phospha 84.3 1.5 3.2E-05 39.8 4.3 28 4-32 117-144 (378)
246 KOG2733 Uncharacterized membra 84.2 0.69 1.5E-05 41.3 2.1 106 4-115 6-118 (423)
247 PLN02928 oxidoreductase family 84.2 1.5 3.2E-05 39.4 4.3 28 4-32 160-187 (347)
248 cd00401 AdoHcyase S-adenosyl-L 84.1 1.5 3.2E-05 40.3 4.3 28 4-32 203-230 (413)
249 PLN02778 3,5-epimerase/4-reduc 84.0 1.3 2.7E-05 38.7 3.7 28 3-31 9-37 (298)
250 PLN00141 Tic62-NAD(P)-related 83.8 1.9 4.1E-05 36.3 4.7 30 3-33 17-47 (251)
251 PRK06436 glycerate dehydrogena 83.7 1.8 3.8E-05 38.1 4.5 28 4-32 123-150 (303)
252 TIGR03026 NDP-sugDHase nucleot 83.6 1.4 3.1E-05 40.3 4.1 27 5-32 2-28 (411)
253 PRK00045 hemA glutamyl-tRNA re 83.6 0.52 1.1E-05 43.4 1.2 32 4-36 183-214 (423)
254 PRK13243 glyoxylate reductase; 83.6 1.7 3.8E-05 38.6 4.5 27 4-31 151-177 (333)
255 PRK15057 UDP-glucose 6-dehydro 83.5 1.5 3.3E-05 39.9 4.2 27 5-33 2-28 (388)
256 PRK14179 bifunctional 5,10-met 83.3 3.2 6.8E-05 36.1 5.8 26 4-30 159-185 (284)
257 PRK01710 murD UDP-N-acetylmura 83.2 3.6 7.8E-05 38.2 6.6 91 4-113 15-106 (458)
258 COG0771 MurD UDP-N-acetylmuram 83.2 6.5 0.00014 36.5 8.1 89 3-108 7-95 (448)
259 PRK07066 3-hydroxybutyryl-CoA 83.2 1.8 3.9E-05 38.4 4.4 28 4-32 8-35 (321)
260 PRK08605 D-lactate dehydrogena 83.1 1.9 4E-05 38.4 4.5 28 4-31 147-174 (332)
261 COG0569 TrkA K+ transport syst 82.9 1.9 4.1E-05 36.1 4.2 29 4-33 1-29 (225)
262 PRK15461 NADH-dependent gamma- 82.5 1.9 4.1E-05 37.6 4.2 26 4-30 2-27 (296)
263 PRK08268 3-hydroxy-acyl-CoA de 82.5 1.8 4E-05 40.8 4.4 28 4-32 8-35 (507)
264 KOG1399 Flavin-containing mono 82.4 1.6 3.5E-05 40.5 3.9 31 1-32 4-34 (448)
265 cd01075 NAD_bind_Leu_Phe_Val_D 82.2 2.3 5.1E-05 34.9 4.4 28 3-31 28-55 (200)
266 PRK00257 erythronate-4-phospha 82.0 2 4.4E-05 39.0 4.3 28 4-32 117-144 (381)
267 PRK07531 bifunctional 3-hydrox 82.0 2 4.2E-05 40.5 4.4 27 4-31 5-31 (495)
268 PRK05732 2-octaprenyl-6-methox 81.9 2 4.4E-05 38.5 4.4 32 1-32 1-34 (395)
269 PRK14031 glutamate dehydrogena 81.9 6.8 0.00015 36.3 7.7 89 4-108 229-337 (444)
270 PLN00125 Succinyl-CoA ligase [ 81.8 7 0.00015 34.3 7.5 88 4-115 13-104 (300)
271 COG1052 LdhA Lactate dehydroge 81.7 2.2 4.7E-05 37.9 4.3 28 4-32 147-174 (324)
272 KOG0455 Homoserine dehydrogena 81.7 1.4 3.1E-05 37.5 2.9 25 1-25 1-25 (364)
273 PLN03139 formate dehydrogenase 81.7 2 4.3E-05 39.1 4.1 28 4-32 200-227 (386)
274 PRK08125 bifunctional UDP-gluc 81.6 2.2 4.7E-05 41.7 4.6 32 3-34 315-347 (660)
275 PRK09126 hypothetical protein; 81.4 2.2 4.7E-05 38.4 4.3 31 1-32 1-31 (392)
276 PRK07340 ornithine cyclodeamin 81.3 1.1 2.5E-05 39.3 2.4 33 4-37 126-159 (304)
277 TIGR00872 gnd_rel 6-phosphoglu 81.2 2.2 4.7E-05 37.3 4.1 27 5-32 2-28 (298)
278 PRK06407 ornithine cyclodeamin 81.2 1.3 2.7E-05 38.9 2.6 97 4-115 118-214 (301)
279 TIGR01763 MalateDH_bact malate 81.1 2.5 5.5E-05 37.1 4.5 27 4-30 2-28 (305)
280 COG1086 Predicted nucleoside-d 80.9 1.6 3.4E-05 41.4 3.3 102 4-116 251-378 (588)
281 PRK09260 3-hydroxybutyryl-CoA 80.8 2.5 5.4E-05 36.6 4.4 28 4-32 2-29 (288)
282 PRK11790 D-3-phosphoglycerate 80.6 2.4 5.2E-05 38.9 4.3 28 4-32 152-179 (409)
283 PRK08223 hypothetical protein; 80.4 1.3 2.8E-05 38.6 2.4 24 3-26 27-50 (287)
284 PRK09987 dTDP-4-dehydrorhamnos 80.3 2.4 5.2E-05 36.8 4.1 22 5-26 2-24 (299)
285 TIGR03855 NAD_NadX aspartate d 80.1 2 4.3E-05 36.2 3.4 33 81-113 36-68 (229)
286 PRK05562 precorrin-2 dehydroge 80.0 12 0.00026 31.4 7.9 91 4-116 26-118 (223)
287 PF01370 Epimerase: NAD depend 79.9 3 6.5E-05 34.2 4.4 27 6-33 1-28 (236)
288 PLN02712 arogenate dehydrogena 79.9 2.7 5.9E-05 41.1 4.7 77 3-102 52-128 (667)
289 PRK09599 6-phosphogluconate de 79.7 2.6 5.7E-05 36.8 4.2 26 5-31 2-27 (301)
290 COG0644 FixC Dehydrogenases (f 79.7 2.7 5.8E-05 38.2 4.4 32 1-33 1-32 (396)
291 COG0702 Predicted nucleoside-d 79.7 2.7 5.9E-05 35.4 4.2 30 4-34 1-31 (275)
292 COG1250 FadB 3-hydroxyacyl-CoA 79.4 2.3 4.9E-05 37.5 3.6 31 1-32 1-31 (307)
293 cd01339 LDH-like_MDH L-lactate 79.2 1.7 3.6E-05 38.0 2.7 21 6-26 1-21 (300)
294 TIGR01087 murD UDP-N-acetylmur 79.1 8.3 0.00018 35.4 7.5 86 5-107 1-87 (433)
295 PRK07877 hypothetical protein; 79.1 1.2 2.6E-05 43.9 1.9 29 80-108 194-223 (722)
296 PLN02572 UDP-sulfoquinovose sy 79.0 3.1 6.6E-05 38.5 4.5 30 3-33 47-77 (442)
297 COG3268 Uncharacterized conser 78.8 1.5 3.3E-05 38.8 2.3 97 4-115 7-106 (382)
298 PRK14189 bifunctional 5,10-met 78.5 9 0.00019 33.4 7.0 27 4-31 159-186 (285)
299 TIGR03589 PseB UDP-N-acetylglu 78.4 3.6 7.8E-05 36.2 4.7 31 2-32 3-35 (324)
300 PRK07326 short chain dehydroge 78.4 3.7 8E-05 33.8 4.5 29 4-33 7-36 (237)
301 TIGR01202 bchC 2-desacetyl-2-h 78.2 5.1 0.00011 34.9 5.5 28 4-32 146-173 (308)
302 cd01336 MDH_cytoplasmic_cytoso 78.2 3.6 7.8E-05 36.5 4.6 24 3-26 2-26 (325)
303 PRK14989 nitrite reductase sub 77.9 3.2 6.9E-05 41.8 4.6 33 1-33 1-36 (847)
304 PRK15182 Vi polysaccharide bio 77.8 2.9 6.3E-05 38.5 4.0 29 3-33 6-34 (425)
305 PRK05335 tRNA (uracil-5-)-meth 77.7 3.4 7.4E-05 38.1 4.4 30 3-33 2-31 (436)
306 COG1091 RfbD dTDP-4-dehydrorha 77.7 2.6 5.7E-05 36.6 3.4 28 5-34 2-30 (281)
307 PRK08163 salicylate hydroxylas 77.5 3.7 8E-05 36.9 4.6 29 3-32 4-32 (396)
308 PLN02306 hydroxypyruvate reduc 77.5 3.6 7.7E-05 37.5 4.4 28 4-32 166-194 (386)
309 PRK06199 ornithine cyclodeamin 77.4 2.1 4.5E-05 38.9 2.9 34 4-37 156-190 (379)
310 PRK12490 6-phosphogluconate de 77.4 3.4 7.5E-05 36.0 4.2 26 5-31 2-27 (299)
311 PRK08013 oxidoreductase; Provi 77.4 3.5 7.7E-05 37.3 4.4 32 1-33 1-32 (400)
312 PRK10217 dTDP-glucose 4,6-dehy 77.4 3.7 8.1E-05 36.3 4.5 23 4-26 2-25 (355)
313 KOG1203 Predicted dehydrogenas 77.3 3.3 7.1E-05 37.9 4.1 31 2-33 78-109 (411)
314 PRK10675 UDP-galactose-4-epime 77.2 3.7 7.9E-05 36.0 4.4 29 4-33 1-30 (338)
315 TIGR03219 salicylate_mono sali 77.2 3.1 6.7E-05 37.9 4.0 28 4-31 1-28 (414)
316 TIGR01505 tartro_sem_red 2-hyd 77.1 2.9 6.2E-05 36.2 3.6 26 5-31 1-26 (291)
317 PTZ00187 succinyl-CoA syntheta 77.0 10 0.00022 33.5 7.0 90 4-115 30-123 (317)
318 PLN02896 cinnamyl-alcohol dehy 76.9 4.4 9.6E-05 35.9 4.8 30 3-33 10-40 (353)
319 PRK11259 solA N-methyltryptoph 76.8 3.8 8.2E-05 36.5 4.4 31 1-32 1-31 (376)
320 TIGR02622 CDP_4_6_dhtase CDP-g 76.6 4.3 9.3E-05 36.0 4.7 31 2-33 3-34 (349)
321 KOG0029 Amine oxidase [Seconda 76.5 4.3 9.4E-05 38.3 4.8 33 2-35 14-46 (501)
322 PLN02686 cinnamoyl-CoA reducta 76.2 4.5 9.8E-05 36.3 4.7 31 1-32 51-82 (367)
323 TIGR01181 dTDP_gluc_dehyt dTDP 76.1 3.3 7.2E-05 35.6 3.8 29 5-33 1-31 (317)
324 PRK08063 enoyl-(acyl carrier p 76.0 3.5 7.6E-05 34.3 3.8 31 1-32 2-33 (250)
325 PRK02006 murD UDP-N-acetylmura 76.0 7.3 0.00016 36.6 6.2 29 3-32 7-35 (498)
326 PRK06184 hypothetical protein; 75.9 4 8.7E-05 38.3 4.5 32 1-33 1-32 (502)
327 PTZ00318 NADH dehydrogenase-li 75.8 4.5 9.8E-05 37.1 4.7 32 1-33 8-39 (424)
328 PRK12549 shikimate 5-dehydroge 75.8 3 6.5E-05 36.2 3.3 23 4-26 128-150 (284)
329 PRK15059 tartronate semialdehy 75.6 3.7 8.1E-05 35.8 3.9 26 5-31 2-27 (292)
330 PRK03806 murD UDP-N-acetylmura 75.6 17 0.00037 33.4 8.4 84 4-108 7-91 (438)
331 PRK04965 NADH:flavorubredoxin 75.5 4.4 9.5E-05 36.4 4.5 32 1-33 1-33 (377)
332 PRK12827 short chain dehydroge 75.5 5.1 0.00011 33.1 4.6 30 3-33 6-36 (249)
333 PRK08849 2-octaprenyl-3-methyl 75.4 4.4 9.6E-05 36.5 4.5 32 1-33 1-32 (384)
334 TIGR01214 rmlD dTDP-4-dehydror 75.4 3.9 8.4E-05 34.9 3.9 28 5-33 1-29 (287)
335 PRK12826 3-ketoacyl-(acyl-carr 75.3 5 0.00011 33.2 4.5 30 3-33 6-36 (251)
336 PRK04663 murD UDP-N-acetylmura 75.3 17 0.00037 33.5 8.4 84 4-107 8-93 (438)
337 PF00743 FMO-like: Flavin-bind 75.2 4.8 0.0001 38.3 4.8 30 3-33 1-30 (531)
338 PLN02260 probable rhamnose bio 75.1 4.1 8.9E-05 39.7 4.5 31 3-33 6-38 (668)
339 PRK09880 L-idonate 5-dehydroge 75.1 9 0.0002 33.8 6.3 23 4-26 171-193 (343)
340 PRK08850 2-octaprenyl-6-methox 75.0 4.3 9.3E-05 36.8 4.3 31 1-32 2-32 (405)
341 PRK11445 putative oxidoreducta 74.9 4.2 9.2E-05 36.2 4.2 29 3-33 1-29 (351)
342 PRK07023 short chain dehydroge 74.9 4.9 0.00011 33.3 4.4 29 4-33 2-31 (243)
343 cd05212 NAD_bind_m-THF_DH_Cycl 74.9 6.8 0.00015 30.3 4.8 68 4-112 29-97 (140)
344 PRK05565 fabG 3-ketoacyl-(acyl 74.8 5.6 0.00012 32.8 4.7 31 2-33 4-35 (247)
345 PLN02662 cinnamyl-alcohol dehy 74.8 4.5 9.8E-05 35.1 4.3 29 4-33 5-34 (322)
346 PRK10084 dTDP-glucose 4,6 dehy 74.7 4.4 9.6E-05 35.8 4.3 23 5-27 2-25 (352)
347 PRK06180 short chain dehydroge 74.7 5.9 0.00013 33.7 4.9 30 3-33 4-34 (277)
348 COG0451 WcaG Nucleoside-diphos 74.6 4.5 9.7E-05 34.7 4.2 29 5-34 2-31 (314)
349 KOG1430 C-3 sterol dehydrogena 74.3 5.6 0.00012 35.9 4.7 25 2-26 3-28 (361)
350 PRK09754 phenylpropionate diox 74.2 4.6 9.9E-05 36.6 4.3 32 1-32 1-33 (396)
351 PRK13512 coenzyme A disulfide 74.1 4.9 0.00011 37.1 4.5 30 4-33 2-32 (438)
352 PRK14188 bifunctional 5,10-met 74.0 5.3 0.00011 35.0 4.4 27 4-31 159-186 (296)
353 PRK00421 murC UDP-N-acetylmura 74.0 9.6 0.00021 35.4 6.4 83 4-107 8-91 (461)
354 TIGR01771 L-LDH-NAD L-lactate 73.8 5 0.00011 35.2 4.2 21 8-28 1-21 (299)
355 PRK12409 D-amino acid dehydrog 73.8 5.2 0.00011 36.3 4.5 28 4-32 2-29 (410)
356 PRK03369 murD UDP-N-acetylmura 73.7 11 0.00024 35.4 6.8 85 4-112 13-98 (488)
357 PRK13581 D-3-phosphoglycerate 73.7 4.9 0.00011 38.1 4.5 28 4-32 141-168 (526)
358 PRK13394 3-hydroxybutyrate deh 73.6 6.5 0.00014 32.8 4.9 29 3-32 7-36 (262)
359 PRK06182 short chain dehydroge 73.3 6.7 0.00015 33.2 4.9 32 1-33 1-33 (273)
360 PRK06847 hypothetical protein; 73.2 5.6 0.00012 35.4 4.5 31 1-32 1-32 (375)
361 COG1063 Tdh Threonine dehydrog 73.2 4.3 9.3E-05 36.3 3.8 29 5-33 171-199 (350)
362 PF02423 OCD_Mu_crystall: Orni 73.2 1.2 2.5E-05 39.4 0.1 88 4-107 129-218 (313)
363 PF02254 TrkA_N: TrkA-N domain 73.2 6.5 0.00014 28.6 4.2 28 6-34 1-28 (116)
364 PF00899 ThiF: ThiF family; I 73.1 4.4 9.6E-05 30.7 3.4 23 4-26 3-25 (135)
365 COG1004 Ugd Predicted UDP-gluc 72.9 4.9 0.00011 36.6 3.9 29 4-33 1-29 (414)
366 PRK06914 short chain dehydroge 72.9 6.7 0.00014 33.3 4.8 32 1-33 1-33 (280)
367 TIGR01327 PGDH D-3-phosphoglyc 72.9 5.1 0.00011 38.0 4.3 28 4-32 139-166 (525)
368 PLN02172 flavin-containing mon 72.5 5.5 0.00012 37.1 4.4 29 3-32 10-38 (461)
369 PLN02650 dihydroflavonol-4-red 72.5 6 0.00013 35.0 4.6 30 3-33 5-35 (351)
370 PRK14852 hypothetical protein; 72.5 3.8 8.2E-05 41.6 3.5 24 3-26 332-355 (989)
371 PRK14030 glutamate dehydrogena 72.4 17 0.00038 33.7 7.5 90 4-112 229-341 (445)
372 PRK09496 trkA potassium transp 72.4 5.4 0.00012 36.7 4.4 28 5-33 2-29 (453)
373 PRK00141 murD UDP-N-acetylmura 72.3 15 0.00032 34.3 7.3 84 3-107 15-99 (473)
374 PRK14982 acyl-ACP reductase; P 72.3 6.3 0.00014 35.2 4.5 23 3-25 155-178 (340)
375 cd05313 NAD_bind_2_Glu_DH NAD( 72.0 8.1 0.00018 33.1 5.0 31 4-35 39-69 (254)
376 KOG0069 Glyoxylate/hydroxypyru 71.9 3.5 7.6E-05 36.7 2.8 22 4-25 163-184 (336)
377 COG0654 UbiH 2-polyprenyl-6-me 71.9 5.6 0.00012 35.9 4.3 30 3-33 2-31 (387)
378 PLN02260 probable rhamnose bio 71.8 4.2 9E-05 39.7 3.6 28 2-30 379-407 (668)
379 PRK12829 short chain dehydroge 71.6 6.9 0.00015 32.7 4.5 30 3-33 11-41 (264)
380 PRK14620 NAD(P)H-dependent gly 71.6 4.2 9.1E-05 35.8 3.3 90 5-104 2-93 (326)
381 PLN02477 glutamate dehydrogena 71.4 6.7 0.00015 36.0 4.6 30 4-34 207-236 (410)
382 PRK07577 short chain dehydroge 71.4 7.9 0.00017 31.7 4.8 32 1-33 1-33 (234)
383 PRK14851 hypothetical protein; 71.4 4 8.6E-05 40.0 3.3 24 3-26 43-66 (679)
384 PRK06617 2-octaprenyl-6-methox 71.2 6.2 0.00013 35.4 4.4 29 3-32 1-29 (374)
385 PLN02583 cinnamoyl-CoA reducta 71.2 7.8 0.00017 33.5 4.9 29 4-33 7-36 (297)
386 TIGR01472 gmd GDP-mannose 4,6- 71.1 6 0.00013 34.9 4.2 29 4-33 1-30 (343)
387 PRK06823 ornithine cyclodeamin 71.1 3.5 7.5E-05 36.5 2.6 96 4-115 129-224 (315)
388 KOG2742 Predicted oxidoreducta 71.0 1.7 3.7E-05 38.5 0.7 88 1-107 1-88 (367)
389 PRK05600 thiamine biosynthesis 71.0 9.8 0.00021 34.4 5.5 24 3-26 41-64 (370)
390 PTZ00079 NADP-specific glutama 70.9 25 0.00053 32.8 8.1 92 4-112 238-350 (454)
391 COG0677 WecC UDP-N-acetyl-D-ma 70.8 4.5 9.8E-05 36.8 3.3 29 4-33 10-38 (436)
392 PRK05868 hypothetical protein; 70.8 6.5 0.00014 35.4 4.4 29 3-32 1-29 (372)
393 PF02882 THF_DHG_CYH_C: Tetrah 70.7 9.7 0.00021 30.2 4.8 27 4-31 37-64 (160)
394 PRK05557 fabG 3-ketoacyl-(acyl 70.6 8.6 0.00019 31.6 4.9 30 3-33 5-35 (248)
395 COG0665 DadA Glycine/D-amino a 70.5 7.3 0.00016 34.7 4.7 30 2-32 3-32 (387)
396 PRK07231 fabG 3-ketoacyl-(acyl 70.5 8.3 0.00018 31.9 4.8 29 4-33 6-35 (251)
397 PRK08017 oxidoreductase; Provi 70.3 8.6 0.00019 32.0 4.8 28 4-32 3-31 (256)
398 PRK12429 3-hydroxybutyrate deh 69.9 8.5 0.00018 32.0 4.7 30 3-33 4-34 (258)
399 PRK02472 murD UDP-N-acetylmura 69.7 14 0.0003 34.0 6.4 88 4-107 6-93 (447)
400 PRK09897 hypothetical protein; 69.5 4.7 0.0001 38.3 3.3 23 3-25 1-23 (534)
401 PRK07806 short chain dehydroge 69.5 8.8 0.00019 31.8 4.7 29 4-33 7-36 (248)
402 PF01494 FAD_binding_3: FAD bi 69.4 7 0.00015 34.0 4.3 28 4-32 2-29 (356)
403 PLN02653 GDP-mannose 4,6-dehyd 69.4 6.8 0.00015 34.4 4.2 30 3-33 6-36 (340)
404 KOG3923 D-aspartate oxidase [A 69.4 3.5 7.5E-05 36.1 2.2 24 1-24 1-24 (342)
405 PRK03803 murD UDP-N-acetylmura 69.4 22 0.00048 32.8 7.7 85 5-107 8-93 (448)
406 PTZ00142 6-phosphogluconate de 69.4 6.1 0.00013 37.0 4.0 27 4-31 2-28 (470)
407 PRK10538 malonic semialdehyde 69.2 8.6 0.00019 32.0 4.6 29 4-33 1-30 (248)
408 cd05191 NAD_bind_amino_acid_DH 69.2 7.7 0.00017 26.9 3.6 23 3-25 23-45 (86)
409 PRK09291 short chain dehydroge 69.2 9.3 0.0002 31.8 4.8 29 4-33 3-32 (257)
410 PRK08263 short chain dehydroge 69.1 9.7 0.00021 32.3 5.0 31 1-32 1-32 (275)
411 PF01262 AlaDh_PNT_C: Alanine 69.1 9.3 0.0002 30.2 4.5 30 3-33 20-49 (168)
412 PRK11150 rfaD ADP-L-glycero-D- 69.0 6.8 0.00015 33.9 4.0 27 6-33 2-29 (308)
413 PRK07494 2-octaprenyl-6-methox 68.9 7.6 0.00016 34.8 4.4 29 4-33 8-36 (388)
414 PTZ00188 adrenodoxin reductase 68.9 7.1 0.00015 36.8 4.3 28 3-30 39-66 (506)
415 PRK06057 short chain dehydroge 68.7 9.4 0.0002 31.9 4.7 32 1-33 5-37 (255)
416 COG1086 Predicted nucleoside-d 68.7 7.3 0.00016 37.1 4.3 32 3-34 116-147 (588)
417 PRK08773 2-octaprenyl-3-methyl 68.6 7.9 0.00017 34.8 4.5 29 3-32 6-34 (392)
418 PRK07208 hypothetical protein; 68.4 7.4 0.00016 36.1 4.4 31 1-32 2-32 (479)
419 PRK14191 bifunctional 5,10-met 68.3 22 0.00048 30.9 6.9 26 4-30 158-184 (285)
420 COG1810 Uncharacterized protei 68.2 30 0.00066 28.8 7.3 84 3-112 1-86 (224)
421 PRK09186 flagellin modificatio 68.2 9.7 0.00021 31.7 4.7 30 3-33 4-34 (256)
422 PRK07333 2-octaprenyl-6-methox 68.1 7.8 0.00017 34.9 4.4 30 3-32 1-31 (403)
423 PRK07201 short chain dehydroge 68.1 8.1 0.00017 37.3 4.7 29 5-33 2-32 (657)
424 PRK06947 glucose-1-dehydrogena 68.1 9.2 0.0002 31.7 4.5 30 2-32 1-31 (248)
425 PRK07890 short chain dehydroge 67.9 9.5 0.00021 31.8 4.6 32 1-33 3-35 (258)
426 PRK06753 hypothetical protein; 67.8 8.1 0.00018 34.4 4.4 28 4-32 1-28 (373)
427 PLN02986 cinnamyl-alcohol dehy 67.8 9.2 0.0002 33.3 4.6 29 4-33 6-35 (322)
428 PRK09135 pteridine reductase; 67.5 10 0.00023 31.2 4.7 29 4-33 7-36 (249)
429 PLN02586 probable cinnamyl alc 67.2 16 0.00035 32.6 6.2 28 5-33 186-213 (360)
430 TIGR02279 PaaC-3OHAcCoADH 3-hy 67.2 7.2 0.00016 36.8 4.0 29 3-32 5-33 (503)
431 PRK14175 bifunctional 5,10-met 67.0 11 0.00025 32.8 4.9 27 4-31 159-186 (286)
432 PRK06179 short chain dehydroge 66.8 12 0.00025 31.6 4.9 32 1-33 1-34 (270)
433 PRK08177 short chain dehydroge 66.8 11 0.00023 30.9 4.6 29 4-33 2-31 (225)
434 PRK07045 putative monooxygenas 66.6 8.8 0.00019 34.5 4.4 29 3-32 5-33 (388)
435 cd05197 GH4_glycoside_hydrolas 66.5 3.9 8.5E-05 37.7 2.1 83 4-93 1-85 (425)
436 COG1087 GalE UDP-glucose 4-epi 66.5 9.4 0.0002 33.6 4.2 152 4-175 1-175 (329)
437 PRK06500 short chain dehydroge 66.3 11 0.00024 31.1 4.7 29 3-32 6-35 (249)
438 PRK06924 short chain dehydroge 66.3 11 0.00023 31.3 4.6 29 4-33 2-31 (251)
439 PRK06194 hypothetical protein; 65.9 11 0.00024 32.1 4.7 29 3-32 6-35 (287)
440 PRK14190 bifunctional 5,10-met 65.9 21 0.00046 31.1 6.3 22 4-25 159-181 (284)
441 PLN03209 translocon at the inn 65.7 11 0.00024 36.1 5.0 29 4-33 81-110 (576)
442 PRK14573 bifunctional D-alanyl 65.5 19 0.0004 36.2 6.8 86 1-107 1-88 (809)
443 PF07992 Pyr_redox_2: Pyridine 65.5 10 0.00022 30.2 4.2 28 5-33 1-28 (201)
444 TIGR01179 galE UDP-glucose-4-e 65.5 8.6 0.00019 33.1 4.0 28 5-33 1-29 (328)
445 PRK11728 hydroxyglutarate oxid 65.4 10 0.00022 34.2 4.6 29 3-31 2-31 (393)
446 PRK08267 short chain dehydroge 65.3 11 0.00025 31.4 4.6 29 4-33 2-31 (260)
447 cd01483 E1_enzyme_family Super 65.3 6.9 0.00015 29.9 3.0 22 5-26 1-22 (143)
448 PRK14172 bifunctional 5,10-met 65.1 25 0.00055 30.5 6.6 22 4-25 159-181 (278)
449 KOG1800 Ferredoxin/adrenodoxin 65.0 12 0.00027 34.0 4.8 30 3-32 20-50 (468)
450 PRK08243 4-hydroxybenzoate 3-m 65.0 10 0.00022 34.2 4.4 29 3-32 2-30 (392)
451 COG2907 Predicted NAD/FAD-bind 64.8 5.9 0.00013 35.6 2.7 28 3-30 8-35 (447)
452 cd05297 GH4_alpha_glucosidase_ 64.8 3.4 7.3E-05 38.1 1.3 16 4-19 1-16 (423)
453 PRK12742 oxidoreductase; Provi 64.7 8 0.00017 31.7 3.5 29 3-32 6-35 (237)
454 PRK12746 short chain dehydroge 64.7 8 0.00017 32.2 3.5 28 4-32 7-35 (254)
455 PRK12936 3-ketoacyl-(acyl-carr 64.7 8.2 0.00018 31.8 3.6 24 3-26 6-30 (245)
456 PLN02852 ferredoxin-NADP+ redu 64.5 9.2 0.0002 36.0 4.2 30 3-32 26-56 (491)
457 PRK12939 short chain dehydroge 64.5 13 0.00028 30.7 4.7 29 4-33 8-37 (250)
458 PRK06185 hypothetical protein; 64.5 10 0.00022 34.3 4.4 30 3-33 6-35 (407)
459 PRK10637 cysG siroheme synthas 64.5 32 0.0007 32.0 7.7 92 3-116 12-105 (457)
460 PRK12828 short chain dehydroge 64.5 12 0.00027 30.4 4.6 29 4-33 8-37 (239)
461 PRK06172 short chain dehydroge 64.4 13 0.00028 30.9 4.8 29 4-33 8-37 (253)
462 PRK07067 sorbitol dehydrogenas 64.3 13 0.00027 31.1 4.7 29 4-33 7-36 (257)
463 PRK08703 short chain dehydroge 64.2 13 0.00028 30.6 4.7 30 3-33 6-36 (239)
464 PRK07588 hypothetical protein; 63.7 10 0.00022 34.1 4.2 28 4-32 1-28 (391)
465 TIGR01746 Thioester-redct thio 63.6 10 0.00022 33.2 4.1 29 5-33 1-31 (367)
466 TIGR01832 kduD 2-deoxy-D-gluco 63.6 14 0.0003 30.6 4.7 30 3-33 5-35 (248)
467 PRK05875 short chain dehydroge 63.6 14 0.0003 31.2 4.8 30 3-33 7-37 (276)
468 PRK07589 ornithine cyclodeamin 63.6 2.8 6E-05 37.6 0.5 97 4-115 130-227 (346)
469 PRK07102 short chain dehydroge 63.5 13 0.00029 30.7 4.6 29 4-33 2-31 (243)
470 PTZ00075 Adenosylhomocysteinas 63.5 11 0.00024 35.3 4.4 27 4-31 255-281 (476)
471 KOG2711 Glycerol-3-phosphate d 63.4 7.5 0.00016 34.6 3.1 24 2-25 20-43 (372)
472 TIGR02360 pbenz_hydroxyl 4-hyd 63.4 11 0.00024 34.0 4.4 29 3-32 2-30 (390)
473 PRK06126 hypothetical protein; 63.3 10 0.00022 36.0 4.2 29 4-33 8-36 (545)
474 PRK05786 fabG 3-ketoacyl-(acyl 63.0 15 0.00032 30.1 4.8 30 3-33 5-35 (238)
475 PRK07814 short chain dehydroge 62.7 15 0.00033 30.8 4.9 30 3-33 10-40 (263)
476 COG1232 HemY Protoporphyrinoge 62.7 9 0.0002 35.6 3.7 30 4-33 1-31 (444)
477 KOG2380 Prephenate dehydrogena 62.5 8.5 0.00018 34.4 3.2 25 3-27 52-76 (480)
478 PRK08264 short chain dehydroge 62.4 9.6 0.00021 31.3 3.6 23 4-26 7-30 (238)
479 PRK07774 short chain dehydroge 62.4 15 0.00032 30.4 4.7 29 4-33 7-36 (250)
480 PRK00711 D-amino acid dehydrog 62.4 12 0.00026 33.8 4.5 25 5-30 2-26 (416)
481 COG2423 Predicted ornithine cy 62.2 5.2 0.00011 35.6 2.0 89 4-107 131-219 (330)
482 PRK06475 salicylate hydroxylas 62.0 12 0.00025 33.9 4.3 27 4-31 3-29 (400)
483 PRK14192 bifunctional 5,10-met 61.9 17 0.00036 31.6 5.0 23 4-26 160-183 (283)
484 PRK11883 protoporphyrinogen ox 61.8 10 0.00022 34.6 3.9 22 4-25 1-22 (451)
485 PRK14170 bifunctional 5,10-met 61.7 30 0.00065 30.1 6.5 22 4-25 158-180 (284)
486 PRK05714 2-octaprenyl-3-methyl 61.7 12 0.00026 33.8 4.4 29 4-33 3-31 (405)
487 PRK05993 short chain dehydroge 61.7 16 0.00036 31.0 5.0 30 3-33 4-34 (277)
488 PRK07825 short chain dehydroge 61.4 16 0.00035 30.8 4.9 30 2-32 4-34 (273)
489 TIGR02354 thiF_fam2 thiamine b 61.3 8.2 0.00018 31.7 2.9 24 3-26 21-44 (200)
490 PRK07538 hypothetical protein; 61.2 12 0.00026 34.0 4.2 28 4-32 1-28 (413)
491 KOG1198 Zinc-binding oxidoredu 61.2 11 0.00023 33.9 3.8 23 4-26 159-182 (347)
492 COG0579 Predicted dehydrogenas 61.1 14 0.0003 34.2 4.5 33 1-33 1-34 (429)
493 PRK09072 short chain dehydroge 61.0 17 0.00037 30.5 4.9 30 3-33 5-35 (263)
494 PRK12416 protoporphyrinogen ox 60.9 13 0.00027 34.4 4.4 22 4-25 2-23 (463)
495 PRK07364 2-octaprenyl-6-methox 60.9 12 0.00027 33.8 4.2 30 3-33 18-47 (415)
496 PRK06183 mhpA 3-(3-hydroxyphen 60.8 12 0.00026 35.5 4.3 30 3-33 10-39 (538)
497 PRK14182 bifunctional 5,10-met 60.7 26 0.00056 30.5 5.9 22 4-25 158-180 (282)
498 PLN02989 cinnamyl-alcohol dehy 60.6 14 0.00031 32.1 4.5 29 3-32 5-34 (325)
499 PRK12745 3-ketoacyl-(acyl-carr 60.6 16 0.00034 30.4 4.6 29 4-33 3-32 (256)
500 PRK06988 putative formyltransf 60.6 15 0.00033 32.3 4.6 34 2-36 1-34 (312)
No 1
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.1e-52 Score=365.71 Aligned_cols=249 Identities=65% Similarity=1.033 Sum_probs=230.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeecCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 72 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~ 72 (254)
++||||+|+|++|+.++|.+.++++++++++ ++++|||.+|+|. ..+..+.+ .+.++|+.+.++++.+
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAERD 79 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcCC
Confidence 3799999999999999999888889999984 6788999999998 77776655 7889999999988778
Q ss_pred CCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC-CCCeEEeeeCcccccCCCCeEEcCChhhHhHHHH
Q 025368 73 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 151 (254)
Q Consensus 73 ~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~-~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~ 151 (254)
+++++|...++|+||+|++.+.++++++.++++|++++++|++.+ +.|++|||+|++.+.. .++|+||+|++++++++
T Consensus 80 p~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~Lapv 158 (331)
T PRK15425 80 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLAPL 158 (331)
T ss_pred hhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHHHH
Confidence 999999666999999999999999999999999999888888854 4699999999999975 78999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeCce
Q 025368 152 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231 (254)
Q Consensus 152 l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~rG 231 (254)
|+||+++|+|+++.++|+|++|++++..|++++++++++|++++|++|..+|.++++.+++|+++++++.+++|||+++|
T Consensus 159 lk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~g 238 (331)
T PRK15425 159 AKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238 (331)
T ss_pred HHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccCe
Confidence 99999999999999999999999988889877678999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCCCHHHHHHHhC
Q 025368 232 SVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 232 ~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
|+.+++++++++++.||++++|+
T Consensus 239 s~~dltv~l~~~~t~eev~~al~ 261 (331)
T PRK15425 239 SVVDLTVRLEKAATYEQIKAAVK 261 (331)
T ss_pred EEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999874
No 2
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-52 Score=364.82 Aligned_cols=251 Identities=68% Similarity=1.058 Sum_probs=230.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe-----------eeeeeccccccccccceeecCCeeEEECCEEEEEee
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 69 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~-----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~ 69 (254)
|+ +||||+|+|++|+.++|++.++++++++++ ++++|||+||+|. ..+..+.+ .+.++|+.+.+++
T Consensus 1 m~-~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MV-VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFF 77 (337)
T ss_pred Cc-eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEe
Confidence 43 799999999999999999888888999884 5678999999998 77776655 7888999999999
Q ss_pred cCCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC-CCCeEEeeeCcccccCCCCeEEcCChhhHhH
Q 025368 70 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCL 148 (254)
Q Consensus 70 ~~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~-~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~ 148 (254)
+.||.+++|...++|+||+|+|.+.++++++.++++|++++++|++.+ +.|++|||+|++.++...++||||+|+++++
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 889999999888999999999999999999999999999888888743 4799999999999976568999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEeeeeccccccccCCCC--CCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEc
Q 025368 149 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 226 (254)
Q Consensus 149 ~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~--~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~v 226 (254)
+++|+||+++|+|+++.++|+|++|..|...|+++ +++++++|++++|++|+.+|.++|+.+++|+++++++.+++||
T Consensus 158 ap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRV 237 (337)
T PTZ00023 158 APLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 237 (337)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEe
Confidence 99999999999999999999999999988888765 3678999999999999999999999999999999999999999
Q ss_pred eeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 227 PTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 227 P~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
|+++||+.+++++++++++.||++++|+
T Consensus 238 Pt~~~s~~dltv~l~k~vt~eev~~al~ 265 (337)
T PTZ00023 238 PVPDVSVVDLTCKLAKPAKYEEIVAAVK 265 (337)
T ss_pred cccCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999999874
No 3
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.5e-52 Score=364.78 Aligned_cols=251 Identities=91% Similarity=1.370 Sum_probs=233.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe-----------eeeeecccccccccc-ceeecCCeeEEECCEEEEEeec
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHH-ELKVKDDKTLLFGEKPVTVFGV 70 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~-----------~~~~~~s~~g~~~~~-~v~~~~g~~l~~~~~~~~~~~~ 70 (254)
++||||+|+|++|+..+|.+.++|+++++++ ++++|||.+|+|. + .+....|+.+.++|+.+.++..
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEEEEEEc
Confidence 4799999999999999999998999999884 6678999999997 4 6766566679999999999887
Q ss_pred CCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCCCCeEEeeeCcccccCCCCeEEcCChhhHhHHH
Q 025368 71 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 150 (254)
Q Consensus 71 ~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l 150 (254)
.+|++++|...++|+||+|+|.+.++++++.++++|++++++|+++++.|++|||+|++.++.+.++|+||+|+++++++
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTTn~Lap 163 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAP 163 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchHHHHHH
Confidence 88999999777999999999999999999999999999888998887889999999999997657899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeCc
Q 025368 151 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230 (254)
Q Consensus 151 ~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~r 230 (254)
+|+||+++|||+++.++|+|++|+++...|++++++++++|++++|++|+.+|..+++.+++|+++++++.+++|||+++
T Consensus 164 ~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avRVPv~~ 243 (338)
T PLN02358 164 LAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVD 243 (338)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEEeeEcC
Confidence 99999999999999999999999999988988778999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCCCHHHHHHHhC
Q 025368 231 VSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 231 G~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
||+.+++++++++++.||++++|+
T Consensus 244 gs~~dl~v~~~~~~t~eev~~~l~ 267 (338)
T PLN02358 244 VSVVDLTVRLEKAATYDEIKKAIK 267 (338)
T ss_pred eeEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999874
No 4
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.4e-51 Score=363.92 Aligned_cols=250 Identities=76% Similarity=1.157 Sum_probs=230.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe-----------eeeeeccccccccccceee-cCCeeEEECCEEEEEeec
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKV-KDDKTLLFGEKPVTVFGV 70 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~-----------~~~~~~s~~g~~~~~~v~~-~~g~~l~~~~~~~~~~~~ 70 (254)
|+||||+|+|++|+.++|.+.+.++++++++ ++++|||++|+|. +.+.. +.+ .+.++|+.+.++..
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~ 162 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSK 162 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEec
Confidence 3699999999999999999887678998883 6678999999998 77764 444 78899999999887
Q ss_pred CCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCCCCeEEeeeCcccccCCCCeEEcCChhhHhHHH
Q 025368 71 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAP 150 (254)
Q Consensus 71 ~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l 150 (254)
.++++++|...++|+||+|++.+.+++.++.++++|+|++|||+.++|.|++|||+|++.++...++|+||+|+++++++
T Consensus 163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap 242 (421)
T PLN02272 163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 242 (421)
T ss_pred CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHH
Confidence 78999999655899999999999999999999999999999988877789999999999998656899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeCc
Q 025368 151 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230 (254)
Q Consensus 151 ~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~r 230 (254)
+|+||+++|+|+++.++|+|++|++++.+|++++++++++|++++|++|+.+|.++++.+++|+++++++.+++|||+++
T Consensus 243 ~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~ 322 (421)
T PLN02272 243 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN 322 (421)
T ss_pred HHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCc
Confidence 99999999999999999999999999999988777899999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCCCHHHHHHHhC
Q 025368 231 VSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 231 G~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
||+.+++++++++++.||++++|+
T Consensus 323 gs~~dltv~lek~~s~eev~~alk 346 (421)
T PLN02272 323 VSVVDLTCRLEKSASYEDVKAAIK 346 (421)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999874
No 5
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.3e-51 Score=362.41 Aligned_cols=250 Identities=50% Similarity=0.830 Sum_probs=229.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC--CCceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeec
Q 025368 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 70 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~--p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~ 70 (254)
++||||+|+|++|+.++|+|.+. |.++++++ |++.|||.+|+|. ..+..+.|+.+.++|+.+.++..
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~~~ 138 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVVSD 138 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEEEc
Confidence 37999999999999999999876 67888864 5667899999998 77766566689999999999988
Q ss_pred CCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCC-CCCCeEEeeeCcccccCCCCeEEcCChhhHhHH
Q 025368 71 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS-KDAPMFVVGVNENEYKPELNIVSNASCTTNCLA 149 (254)
Q Consensus 71 ~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~-~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~ 149 (254)
.|+++++|...++|+||+|++.+.+++.++.++++|+++|++|++. +++|++|||+|++.+++..++|+||+|++++++
T Consensus 139 ~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LA 218 (395)
T PLN03096 139 RNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLA 218 (395)
T ss_pred CCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHH
Confidence 8899999976799999999999999999999999999988889884 357999999999999765789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeC
Q 025368 150 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229 (254)
Q Consensus 150 l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~ 229 (254)
++++||+++|+|+++.+||+|++|++++..|+++ .+++++|+.++|++|..+|.++++.+++|+++++++.+++|||++
T Consensus 219 p~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~ 297 (395)
T PLN03096 219 PFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 297 (395)
T ss_pred HHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEcccc
Confidence 9999999999999999999999999999999865 688899999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 230 DVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 230 rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+||+.+++++++++++.||++++|+
T Consensus 298 ~gs~~dltv~~~~~~t~eev~~al~ 322 (395)
T PLN03096 298 NVSVVDLVVQVEKKTFAEEVNAAFR 322 (395)
T ss_pred ceEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999874
No 6
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4.7e-51 Score=355.96 Aligned_cols=249 Identities=50% Similarity=0.844 Sum_probs=228.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC--CCceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeec
Q 025368 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 70 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~--p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~ 70 (254)
|+||||+|+|++|+.++|.+.++ ++++++++ ++++|||++|+|. ..+..+.+ .+.++|+.+.++.+
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~ 78 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVSD 78 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEEc
Confidence 47999999999999999998776 57999884 5778999999998 77765444 79999999999987
Q ss_pred CCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC--CCCeEEeeeCcccccC-CCCeEEcCChhhHh
Q 025368 71 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKP-ELNIVSNASCTTNC 147 (254)
Q Consensus 71 ~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~--~~~~~v~~vn~~~i~~-~~~iVa~p~C~~t~ 147 (254)
.||++++|...++|+||+|++.+.++++++.++++|++++++|++.. |.|++|||+|++.++. ..++||||+|++++
T Consensus 79 ~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~ 158 (337)
T PRK07403 79 RNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNC 158 (337)
T ss_pred CCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHH
Confidence 89999999766999999999999999999999999999888898843 4699999999999974 36799999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEce
Q 025368 148 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227 (254)
Q Consensus 148 ~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP 227 (254)
++++|+||+++|+|+++.+||+|++|++|+.+|++. .+++++|..++|++|..+|.++++.+++|+++++++.+++|||
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVP 237 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVP 237 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEec
Confidence 999999999999999999999999999999999875 7999999999999999999999999999999999999999999
Q ss_pred eCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 228 ~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+..||+.+++++++++++.|||+++|+
T Consensus 238 t~~vs~~dl~v~l~k~~t~eeI~~~~~ 264 (337)
T PRK07403 238 TPNVSVVDLVVQVEKRTITEQVNEVLK 264 (337)
T ss_pred cCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999999874
No 7
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-50 Score=353.69 Aligned_cols=247 Identities=41% Similarity=0.756 Sum_probs=226.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe-----------eeeeeccccccccccceeecCCeeEEECCEEEEEeecC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 71 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~-----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 71 (254)
++||||+|+|++|+.++|.+.++++++++++ ++++|||+||+|. ..+. +.|+.+.++|+.+.+++..
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~-~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVT-AEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEE-EcCCEEEECCEEEEEEecC
Confidence 4799999999999999999999989999884 4567899999997 7776 4555899999999998777
Q ss_pred CCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC--CCCeEEeeeCcccccCC-CCeEEcCChhhHhH
Q 025368 72 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTNCL 148 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~--~~~~~v~~vn~~~i~~~-~~iVa~p~C~~t~~ 148 (254)
++++++|+ ++|+||+|++.+.++++++.++++|++++++|+++. +.|++|||+|++.+++. .++||||+|+++++
T Consensus 80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L 157 (334)
T PRK08955 80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL 157 (334)
T ss_pred ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence 89999994 899999999999999999999999999888888843 46999999999999862 68999999999999
Q ss_pred HHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEcee
Q 025368 149 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 228 (254)
Q Consensus 149 ~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~ 228 (254)
+++|+||+++|+|+++.++|+|++|.+++..|+++ .+++++|+.++|++|..+|.++++.+++|+++++++.+++|||+
T Consensus 158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv 236 (334)
T PRK08955 158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236 (334)
T ss_pred HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence 99999999999999999999999999999999875 57799999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 229 VDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 229 ~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
++||+.+++++++++++.||++++|+
T Consensus 237 ~~gs~~dl~v~~~~~~s~eev~~~l~ 262 (334)
T PRK08955 237 ANASLTDCVFEVERDTTVEEVNALLK 262 (334)
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 8
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.3e-50 Score=351.84 Aligned_cols=248 Identities=61% Similarity=0.982 Sum_probs=225.9
Q ss_pred EEEEEccCHHHHHHHHHHHcC--CCceeEEe----------eeeeeccccccccccceeecCCeeEEECCE-EEEEeecC
Q 025368 5 KIGINGFGRIGRLVARVILQR--DDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGVR 71 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~--p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~-~~~~~~~~ 71 (254)
||||+|+|++|+.++|++.++ ++++++++ ++++|||++|+|. ..+....++.+.++|+ .+.+++..
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEecC
Confidence 799999999999999998877 47999874 6788999999998 7777644324888998 89998877
Q ss_pred CCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCC-CCeEEeeeCcccccCCCCeEEcCChhhHhHHH
Q 025368 72 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAP 150 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~-~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l 150 (254)
++++++|...++|+||+|++.+.+++.++.++++|++++++|+++.+ +|++|||+|++.++...++|+||+|+++++++
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 89999996569999999999999999999999999998888988555 79999999999998656799999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeCc
Q 025368 151 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230 (254)
Q Consensus 151 ~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~r 230 (254)
+|+||+++|+|+++.++|+|++|++++.+|+++ .+++++|+.++|++|+.+|+++++.+++|+++++++.+++|||+++
T Consensus 160 ~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~~ 238 (327)
T TIGR01534 160 LAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 238 (327)
T ss_pred HHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEecccC
Confidence 999999999999999999999999999999865 5778999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCCCHHHHHHHhC
Q 025368 231 VSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 231 G~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
||+.+++++++++++.||++++|+
T Consensus 239 gs~~dl~v~~~~~~t~eev~~al~ 262 (327)
T TIGR01534 239 VSLVDLVLNLEKDTTKEEVNAALK 262 (327)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999874
No 9
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-49 Score=345.68 Aligned_cols=252 Identities=60% Similarity=0.979 Sum_probs=231.3
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC----CCceeEE-----------eeeeeeccccccccccceee--------cCCee
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKHHELKV--------KDDKT 57 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~----p~~~v~~-----------~~~~~~~s~~g~~~~~~v~~--------~~g~~ 57 (254)
||++||||+|+|++|+.++|++.++ +++++++ +|+++|||.+|+|. ..+.. +.+ .
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~ 78 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-V 78 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-E
Confidence 7778999999999999999998864 5799887 46788999999997 77765 344 7
Q ss_pred EEECCEEEEEe-ecCCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCC-CCeEEeeeCcccccC-C
Q 025368 58 LLFGEKPVTVF-GVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-E 134 (254)
Q Consensus 58 l~~~~~~~~~~-~~~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~-~~~~v~~vn~~~i~~-~ 134 (254)
+.++|+.+.++ ++.||++++|...++|+|++|||.+.+++.+..++++|+|+|+||++.++ .+++|+|+|++.+++ .
T Consensus 79 l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~ 158 (361)
T PTZ00434 79 LVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTE 158 (361)
T ss_pred EEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCccc
Confidence 88899999986 77899999998789999999999999999999999999999999999655 578999999999975 3
Q ss_pred CCeEEcCChhhHhHHHHHHHH-hhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcc
Q 025368 135 LNIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP 213 (254)
Q Consensus 135 ~~iVa~p~C~~t~~~l~l~pL-~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~ 213 (254)
.++|+|.+|+++++++.++.| +++|||+.+.+||+|+.++.|+..|++++.+++.+|..+.|++|..+|.++.+.+++|
T Consensus 159 ~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP 238 (361)
T PTZ00434 159 HHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIP 238 (361)
T ss_pred CcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecc
Confidence 679999999999999999999 7999999999999999999999999986689999999999999999999999999999
Q ss_pred cCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 214 ALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 214 ~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
++++++...++|||+..|.+.+++++++++++.|||+++|+
T Consensus 239 ~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k 279 (361)
T PTZ00434 239 STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIK 279 (361)
T ss_pred ccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999874
No 10
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.4e-49 Score=345.54 Aligned_cols=249 Identities=51% Similarity=0.856 Sum_probs=227.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeecCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 72 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~ 72 (254)
++||||+|+|++|+.++|.+.++++++++++ |+++|||++|+|. ..+..+.+ .+.++|+.+.++++.+
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNRD 79 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcCC
Confidence 3799999999999999999888889999985 6778999999998 77776544 8999999999988889
Q ss_pred CCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCC-CCeEEeeeCcccccC-CCCeEEcCChhhHhHHH
Q 025368 73 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAP 150 (254)
Q Consensus 73 ~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~-~~~~v~~vn~~~i~~-~~~iVa~p~C~~t~~~l 150 (254)
|++++|...++|+||+|++.+.++++++.++++|++++++|++..+ .+.+|||+|++.++. ..++||||+|+++++++
T Consensus 80 p~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~Lap 159 (343)
T PRK07729 80 PKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAP 159 (343)
T ss_pred hhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHHH
Confidence 9999997679999999999999999999999999998888988443 345689999999975 36899999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeCc
Q 025368 151 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230 (254)
Q Consensus 151 ~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~r 230 (254)
+|+||+++|+|+++.+||+|++|++++.+|++. .+++.+|..+.|++|..+++.+.+.+++|+++++++.+++|||+++
T Consensus 160 ~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~~ 238 (343)
T PRK07729 160 VVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 238 (343)
T ss_pred HHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeecC
Confidence 999999999999999999999999999999874 6888899999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCCCHHHHHHHhC
Q 025368 231 VSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 231 G~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
||+.+++++++++++.|+++++|+
T Consensus 239 ~s~~dltv~l~k~~t~eev~~~l~ 262 (343)
T PRK07729 239 VSLVDLVVDVKRDVTVEEINEAFK 262 (343)
T ss_pred eEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999874
No 11
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2e-49 Score=346.74 Aligned_cols=249 Identities=37% Similarity=0.715 Sum_probs=225.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC---CCceeEE----------eeeeeeccccccccccceeecCCeeEEECCEEEEEee
Q 025368 3 KVKIGINGFGRIGRLVARVILQR---DDVELVA----------TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG 69 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~---p~~~v~~----------~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~ 69 (254)
|+||||+|+|++|+.++|+|.++ +++++++ +|+++|||.+|+|. ..+.. .|+.+.++|+.+.+++
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~-~~v~~-~~~~l~v~g~~i~v~~ 78 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFA-WDVRQ-ERDQLFVGDDAIRLLH 78 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCC-CcEEe-cCCEEEECCEEEEEEE
Confidence 36999999999999999999874 4788885 46788899999998 77764 4558999999999988
Q ss_pred cCCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC-C-CCeEEeeeCcccccCCCCeEEcCChhhHh
Q 025368 70 VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNC 147 (254)
Q Consensus 70 ~~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~-~-~~~~v~~vn~~~i~~~~~iVa~p~C~~t~ 147 (254)
+.++++++|...++|+||+|++.+.++++++.++++|++++++|++.. + .+++|||+|++.+++..++||||+|++++
T Consensus 79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~ 158 (336)
T PRK13535 79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC 158 (336)
T ss_pred cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence 788999999767999999999999999999999999999888888842 3 34899999999998657899999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEce
Q 025368 148 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227 (254)
Q Consensus 148 ~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP 227 (254)
++++|+||+++|||+++.++|+|++|..++.+|++. .+++.+|..++|++|+.++..+|+.+++|+++++++.+++|||
T Consensus 159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVP 237 (336)
T PRK13535 159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVP 237 (336)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeC
Confidence 999999999999999999999999998899999874 6888899999999999888889999999999999999999999
Q ss_pred eCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 228 ~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+++||+.+++++++++++.|+++++|+
T Consensus 238 v~~gs~~dl~v~~~~~~t~eei~~~l~ 264 (336)
T PRK13535 238 TINVTAIDLSVTVKKPVKVNEVNQLLQ 264 (336)
T ss_pred ccCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999999874
No 12
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=5e-49 Score=350.40 Aligned_cols=250 Identities=53% Similarity=0.877 Sum_probs=228.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC--CCceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeec
Q 025368 3 KVKIGINGFGRIGRLVARVILQR--DDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 70 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~--p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~ 70 (254)
++||||+|+|++|+.++|.+.++ ++++++++ ++++|||+||+|. ..+....++.+.++|+.+.+++.
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEEEc
Confidence 48999999999999999997755 67999884 6788999999997 77754234479999999999886
Q ss_pred CCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC--CCCeEEeeeCcccccCC-CCeEEcCChhhHh
Q 025368 71 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTNC 147 (254)
Q Consensus 71 ~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~--~~~~~v~~vn~~~i~~~-~~iVa~p~C~~t~ 147 (254)
.+|.+++|...++|+||+|+|.+.++++++.++++|++++++|++.. ++|++|||+|++.++.. .++|+||+|++++
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNc 233 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNC 233 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHH
Confidence 68899999777999999999999999999999999999888898843 47899999999999764 6899999999999
Q ss_pred HHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEce
Q 025368 148 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227 (254)
Q Consensus 148 ~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP 227 (254)
++++++||+++|+|+++.++|+|++|++|+.+|++ +.+++.+|..+.|++|..+|..+.+.+++|++++++...++|||
T Consensus 234 LAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~-h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVP 312 (442)
T PLN02237 234 LAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVP 312 (442)
T ss_pred HHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCC-CcccccccccccccccCCcchhhhhceecccCCCceeeEEEecc
Confidence 99999999999999999999999999999999987 58999999999999999999999999999999999999999999
Q ss_pred eCceeEEEEEEEecC-CCCHHHHHHHhC
Q 025368 228 TVDVSVVDLTVRLEK-DASYDEIKAAIK 254 (254)
Q Consensus 228 ~~rG~~~~~~~~~~~-~~~~~~v~~~~~ 254 (254)
+..|.+.++++++++ +++.|||+++|+
T Consensus 313 t~nvS~vDLt~~l~k~~~t~eein~~~k 340 (442)
T PLN02237 313 TPNVSVVDLVVNVEKKGITAEDVNAAFR 340 (442)
T ss_pred cCCceEEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999998 799999999874
No 13
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=2.5e-47 Score=333.55 Aligned_cols=247 Identities=38% Similarity=0.721 Sum_probs=221.2
Q ss_pred EEEEEccCHHHHHHHHHHHcCC---CceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeecC
Q 025368 5 KIGINGFGRIGRLVARVILQRD---DVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 71 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p---~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 71 (254)
||||+|+|++|+.++|+|.+++ +|+++.+ ++++|||.+|+|. ..+.. .|+.+.++|+.+.++...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~-~~v~~-~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFP-GEVKV-DGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCC-CcEEE-eCCEEEECCeEEEEEEcC
Confidence 6999999999999999998764 6999885 4567899999997 77764 455899999999998878
Q ss_pred CCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCC-C-CCeEEeeeCcccccCCCCeEEcCChhhHhHH
Q 025368 72 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-D-APMFVVGVNENEYKPELNIVSNASCTTNCLA 149 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~-~-~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~ 149 (254)
++++++|...++|+||+|+|.+.++++++.++++|++++++|++.. + ..++|||+|++.+++..++||||+|++++++
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~la 158 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIV 158 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHH
Confidence 8999999777999999999999999999999999998888888732 2 3479999999999865789999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeC
Q 025368 150 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229 (254)
Q Consensus 150 l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~ 229 (254)
++|+||+++|+|+++.++|+|++|+.++.+|++. .+++.+|....|++|...+..+++.+++|+++++++.+++|||++
T Consensus 159 p~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv~ 237 (325)
T TIGR01532 159 PLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPTV 237 (325)
T ss_pred HHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEeccc
Confidence 9999999999999999999999999988999874 688888766669999988888999999999999999999999999
Q ss_pred ceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 230 DVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 230 rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+||+.+++++++++++.|+++++|+
T Consensus 238 ~~s~~dl~v~~~~~~~~eev~~~l~ 262 (325)
T TIGR01532 238 NVTALDLSVTTKRDVKANEVNRVLR 262 (325)
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999874
No 14
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-47 Score=330.10 Aligned_cols=249 Identities=30% Similarity=0.547 Sum_probs=220.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe-----------eeeeeccccccccccceeecCCeeEEECC-EEEEEeecC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVKDDKTLLFGE-KPVTVFGVR 71 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~-----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~-~~~~~~~~~ 71 (254)
+||||+|+|++|+.++|++.++++++++++ ++++|||+||+|....+..+.+ .+.++| +.+.++++.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAKH 81 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEecC
Confidence 799999999999999999888888999885 4567899999994246665554 788888 789999988
Q ss_pred CCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCCCCeEEeeeCcccccCCCCeEEcCChhhHhHHHH
Q 025368 72 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPL 151 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~ 151 (254)
++++++|...++|+||+|++.+.+.+....++++|++++++|+++++.|++|||+|++.+++..++|+||+|++++++++
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lapv 161 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPV 161 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHHH
Confidence 99999997669999999999998888888899999998999998777899999999999986567999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeeccccccccCCCC--CCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeC
Q 025368 152 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--SKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229 (254)
Q Consensus 152 l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~--~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~ 229 (254)
++||+++|+|+++.+||+|+.. .+...|.++ +++++.+|..+.|++|..++..+++.+++|+++++++.+++|||++
T Consensus 162 lkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt~ 240 (342)
T PTZ00353 162 IRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVK 240 (342)
T ss_pred HHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcccc
Confidence 9999999999999999998875 333344444 3678888888889999888888999999999999999999999999
Q ss_pred ceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 230 DVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 230 rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+|++.+++++++++++.||++++|+
T Consensus 241 ~vs~vdltv~~~k~~t~eein~~l~ 265 (342)
T PTZ00353 241 KGCAIDMLVRTKQPVSKEVVDSALA 265 (342)
T ss_pred CeEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999999999999999999999874
No 15
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-46 Score=321.52 Aligned_cols=249 Identities=63% Similarity=0.966 Sum_probs=229.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC-CceeEEee----------eeeeccccccccccceeecCCeeEEECCEEEEEeecC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD-DVELVATY----------MFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 71 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p-~~~v~~~~----------~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 71 (254)
|+||||+|+|+||+.++|++.+++ +++++++. +++|||.+|.|. +.+..+.+ .+.+++..++++...
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEecC
Confidence 479999999999999999999998 79999964 456789899998 66654443 788999899999888
Q ss_pred CCCCCCcccCCCcEEEEecCCccCHHHHHHHHHC-CCCeEEecCCCCC-CCeEEeeeCcccccCCCCeEEcCChhhHhHH
Q 025368 72 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLA 149 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~-G~~~~viS~~~~~-~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~ 149 (254)
+|+.++|...++|+|++|||.+.+++..++++++ |+|++++|++.++ ++.+|+++|++.++....+|+|.+|++||++
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 8899999888999999999999999999999988 5999999999665 8999999999999866899999999999999
Q ss_pred HHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEceeC
Q 025368 150 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229 (254)
Q Consensus 150 l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~ 229 (254)
+.+++|.++|||+++.+|++|+.++.|...|+|+ .+++.+|.++.|++|..++|.+.+..++|++++++..+++|||+.
T Consensus 159 p~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt~ 237 (335)
T COG0057 159 PVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPTP 237 (335)
T ss_pred HHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecCC
Confidence 9999999999999999999999999999999876 679999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 230 DVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 230 rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
.+|+.+++++++++++.|||+++|+
T Consensus 238 ~vs~~dl~v~l~k~~t~eeIn~alk 262 (335)
T COG0057 238 NVSVVDLTVELEKEVTVEEINAALK 262 (335)
T ss_pred CcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999999999874
No 16
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-46 Score=335.20 Aligned_cols=250 Identities=40% Similarity=0.664 Sum_probs=229.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC----CCceeEEe--------------eeeeeccccccccccceeecC-CeeEEECCE
Q 025368 3 KVKIGINGFGRIGRLVARVILQR----DDVELVAT--------------YMFKYDSVHGQWKHHELKVKD-DKTLLFGEK 63 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~----p~~~v~~~--------------~~~~~~s~~g~~~~~~v~~~~-g~~l~~~~~ 63 (254)
..||+|+|+|++|+.++|++.++ ++++++++ ++++|||.||+|. +.+..+. +..+.++|+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECCE
Confidence 46999999999999999998876 57999887 4567899999998 7777652 337888999
Q ss_pred EEEEeecCCCCCCCcccCCCc--EEEEecCCccCHHHHHHHHH-CCCCeEEecCCCCC-CCeEEeeeCcccccCCCCeEE
Q 025368 64 PVTVFGVRNPEEIPWAETGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVS 139 (254)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~D--vv~~a~~~~~s~~~~~~~~~-~G~~~~viS~~~~~-~~~~v~~vn~~~i~~~~~iVa 139 (254)
.+.++...+|++++|...++| +|++||+.+.+.+.+..+++ +|+|+|++|++.++ .|++|||+|++.+.+..++||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999889999999878999 99999999999999999999 89999999999654 799999999999976567999
Q ss_pred cCChhhHhHHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCce
Q 025368 140 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKL 219 (254)
Q Consensus 140 ~p~C~~t~~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v 219 (254)
||+|+++++++++++|+++|||+++.++|+|++|+.++.+|++. .+++++|++++|++|..+|.++++.+++|++++++
T Consensus 286 nASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKl 364 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKL 364 (477)
T ss_pred CCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCcE
Confidence 99999999999999999999999999999999999999999875 67899999999999999999999999999999999
Q ss_pred eEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 220 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 220 ~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+.+++|||++.|++++++++++++++.|+++++|+
T Consensus 365 tg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk 399 (477)
T PRK08289 365 TGNAIRVPTPNVSMAILNLNLEKETSREELNEYLR 399 (477)
T ss_pred EEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 17
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-45 Score=323.13 Aligned_cols=232 Identities=22% Similarity=0.240 Sum_probs=186.7
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHc--CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCc
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQ--RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 78 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~--~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 78 (254)
.++||||+|+ ||+|++|+|+|.+ ||.+++..+.+.+ +.|+.+.+++..+.+. ++++++|
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~---------------saG~~~~~~~~~~~v~---~~~~~~~ 64 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEE---------------SAGETLRFGGKSVTVQ---DAAEFDW 64 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccC---------------cCCceEEECCcceEEE---eCchhhc
Confidence 4689999999 9999999999999 8999998886542 2333455555544442 3455555
Q ss_pred ccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCc---ccccCCCCeEEcCChhhHhHHHHH
Q 025368 79 AETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNE---NEYKPELNIVSNASCTTNCLAPLA 152 (254)
Q Consensus 79 ~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~---~~i~~~~~iVa~p~C~~t~~~l~l 152 (254)
.++|+||+|+|++.+.++++++.++|+++++.|++ +++.|+.+||+|+ +.++ ++++|+|||||+|+++++|
T Consensus 65 --~~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~~iIAnPgC~~t~~~laL 141 (336)
T PRK08040 65 --SQAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NRNIIAVADSLTSQLLTAI 141 (336)
T ss_pred --cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc-cCCEEECCCHHHHHHHHHH
Confidence 57999999999999999999999999954445776 3468999999999 5555 3789999999999999999
Q ss_pred HHHhhhcCeeEEEEEeeeeccccccccC-C-----------CCCCCccccccccceeeccC---------CCh-hhhhhh
Q 025368 153 KVIHDKFGIVEGLMTTVHSITATQKTVD-G-----------PSSKDWRGGRAASFNIIPSS---------TGA-AKAVGK 210 (254)
Q Consensus 153 ~pL~~~~~i~~~~v~~~~~~sg~~~~~d-~-----------~~~~~~~~~~~~~~n~~p~~---------~~~-~~e~~~ 210 (254)
+||+++++|++..|++++++||+++... . .+.+...|++++++|++||+ |.| .+|+.+
T Consensus 142 ~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~~erh~~~Ei~k 221 (336)
T PRK08040 142 KPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVREERRLVDQVRK 221 (336)
T ss_pred HHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcchHhhhhHHHHHH
Confidence 9999999999988899999999865322 1 11123578878999999993 345 677888
Q ss_pred hcccCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 211 VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 211 ~l~~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+|..-+.+++||||||||+|||++++|++++++++.++++++|+
T Consensus 222 iL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~ 265 (336)
T PRK08040 222 ILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALE 265 (336)
T ss_pred HhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHh
Confidence 87422335999999999999999999999999999999999884
No 18
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=4e-44 Score=314.69 Aligned_cols=235 Identities=17% Similarity=0.275 Sum_probs=184.8
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
.+||||+|+ ||+|++|+|+|.+||+|++..+..+.... +.|+.+.++++.+.+.. .++++ | .
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~------------saGk~~~~~~~~l~v~~-~~~~~--~--~ 67 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKR------------SAGKTVQFKGREIIIQE-AKINS--F--E 67 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcc------------cCCCCeeeCCcceEEEe-CCHHH--h--c
Confidence 479999999 99999999999999999976655443111 34445566665444432 34433 3 5
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCcccccCCCCeEEcCChhhHhHHHHHHHHhhh
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDK 158 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~l~pL~~~ 158 (254)
++|+||+|+|+++++++++++.++|+++++.|++ +++.|+.+||+|++++++..++|+||||++|+++++|+||+++
T Consensus 68 ~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~tt~~~laL~PL~~~ 147 (347)
T PRK06728 68 GVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSALQMVTALQPIRKV 147 (347)
T ss_pred CCCEEEECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999944444665 4678999999999999863379999999999999999999999
Q ss_pred cCeeEEEEEeeeecccccccc-CC-----------CCCCCcccc-------ccccceeeccC-----CChhhhhhh----
Q 025368 159 FGIVEGLMTTVHSITATQKTV-DG-----------PSSKDWRGG-------RAASFNIIPSS-----TGAAKAVGK---- 210 (254)
Q Consensus 159 ~~i~~~~v~~~~~~sg~~~~~-d~-----------~~~~~~~~~-------~~~~~n~~p~~-----~~~~~e~~~---- 210 (254)
++|++..+++++++||+++.+ ++ .+.....|+ .+++||++|++ .|+++|+++
T Consensus 148 ~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E 227 (347)
T PRK06728 148 FGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQE 227 (347)
T ss_pred CCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCCccHHHHHHHHH
Confidence 999999999999999985422 21 111234566 88999999998 455666554
Q ss_pred ---hcccCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 211 ---VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 211 ---~l~~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+|..-+.++++||+|||+++||+.+++++|+++++.++++++|+
T Consensus 228 ~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~ 274 (347)
T PRK06728 228 TKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLF 274 (347)
T ss_pred HHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 44221345999999999999999999999999999999999874
No 19
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=311.71 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=187.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
|+||+|+|+ ||+|.||+|+|.+||++|+..+.++++ .|+.. .++. ..+.|....-++..+++.+. .+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~---~g~~~-~~~~------p~l~g~~~l~~~~~~~~~~~--~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER---AGKPV-SDVH------PNLRGLVDLPFQTIDPEKIE--LD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh---cCCch-HHhC------cccccccccccccCChhhhh--cc
Confidence 589999999 999999999999999999766665542 35544 2222 21222111112223444431 35
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC-C-------------C----C-CCeEE---eeeCcccccCCCCeEE
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-S-------------K----D-APMFV---VGVNENEYKPELNIVS 139 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~-~-------------~----~-~~~~v---~~vn~~~i~~~~~iVa 139 (254)
++|+||+|+||++++++++.+++.|++++++|+| + + + ...+| ||+++|+|++ +++|+
T Consensus 70 ~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~-A~lIA 148 (349)
T COG0002 70 ECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRG-AKLIA 148 (349)
T ss_pred cCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhc-CCEee
Confidence 6999999999999999999999999976667998 2 1 1 23677 5789999995 99999
Q ss_pred cCChhhHhHHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccC---CChhhhhhhhcccCC
Q 025368 140 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALN 216 (254)
Q Consensus 140 ~p~C~~t~~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~---~~~~~e~~~~l~~~~ 216 (254)
|||||+|+.+|+|+||.++..|+.....+++++||.++++..++ ..+.+. ...+|+.||. |.|++|+.|.+..+.
T Consensus 149 nPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s-~~~~~~-e~~~~~~~Y~~~~HrH~pEi~q~l~~l~ 226 (349)
T COG0002 149 NPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKAS-VKNHFP-EVNDSLRPYGLTGHRHTPEIEQHLGRLA 226 (349)
T ss_pred CCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcc-ccccch-hhccccccccccccCchHHHHHHhhhcc
Confidence 99999999999999999997776555468999999988887766 455555 5777899988 789999999998765
Q ss_pred ---CceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 217 ---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 217 ---~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
..++||||.+|++||+++|+|+++++.++.+|++++|+
T Consensus 227 ~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~ 267 (349)
T COG0002 227 GRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYE 267 (349)
T ss_pred cCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHH
Confidence 45999999999999999999999999999999999874
No 20
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-43 Score=311.95 Aligned_cols=234 Identities=16% Similarity=0.200 Sum_probs=183.8
Q ss_pred CC-CcEEEEEcc-CHHHHHHHHHHH--cCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCC
Q 025368 1 MG-KVKIGINGF-GRIGRLVARVIL--QRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEI 76 (254)
Q Consensus 1 M~-~~~V~IvG~-G~~G~~l~~~L~--~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~ 76 (254)
|+ |+||+|+|+ ||+|++|+|+|. +||.+++..+.+.+ ..|+ .+.+++....+. +.+..
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~---~aG~------------~l~~~~~~l~~~---~~~~~ 62 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSE---SAGH------------SVPFAGKNLRVR---EVDSF 62 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcc---cCCC------------eeccCCcceEEe---eCChH
Confidence 44 579999999 999999999999 78999988886643 2244 233334333332 22222
Q ss_pred CcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC--CCCCCeEEeeeCcccccC--CCCeEEcCChhhHhHHHHH
Q 025368 77 PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP--SKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAPLA 152 (254)
Q Consensus 77 ~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~--~~~~~~~v~~vn~~~i~~--~~~iVa~p~C~~t~~~l~l 152 (254)
+| +++|+||+|+|++.+.++++++.++|+++++.|++ .++.|+.+||+|+++++. ++++|+|||||+|+++++|
T Consensus 63 ~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~~t~~~laL 140 (336)
T PRK05671 63 DF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSASAVALAVAL 140 (336)
T ss_pred Hh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcHHHHHHHHH
Confidence 23 57999999999999999999999999965556776 246899999999999874 2689999999999999999
Q ss_pred HHHhhhcCeeEEEEEeeeeccccccccCCC------------CCCCccccccccceeeccCC-----ChhhhhhhhcccC
Q 025368 153 KVIHDKFGIVEGLMTTVHSITATQKTVDGP------------SSKDWRGGRAASFNIIPSST-----GAAKAVGKVLPAL 215 (254)
Q Consensus 153 ~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~------------~~~~~~~~~~~~~n~~p~~~-----~~~~e~~~~l~~~ 215 (254)
+||++.+++++..|++++++||+++..... +.....|+++++||++|+.. +|+.|+.|+.+|+
T Consensus 141 ~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r~~~Ei 220 (336)
T PRK05671 141 APLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAEL 220 (336)
T ss_pred HHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHHHHHHHHH
Confidence 999988888889999999999986543221 01234578889999999874 5655555555443
Q ss_pred -------CCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 216 -------NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 216 -------~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+.+++|||||||++|||++++|++++++++.++++++|+
T Consensus 221 ~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~ 266 (336)
T PRK05671 221 RQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALE 266 (336)
T ss_pred HHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHh
Confidence 335999999999999999999999999999999999885
No 21
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-42 Score=307.37 Aligned_cols=230 Identities=22% Similarity=0.328 Sum_probs=181.9
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHc--CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~--~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
|+||+|+|+ ||+|++|+|+|.+ ||.+++..+.+.+ ..|+ .+.+++..+.+. +.+..+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~---~~g~------------~l~~~g~~i~v~---d~~~~~~- 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR---SAGK------------ELSFKGKELKVE---DLTTFDF- 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc---cCCC------------eeeeCCceeEEe---eCCHHHH-
Confidence 369999999 9999999999999 7888988876542 1122 333444444442 3333345
Q ss_pred cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCcccccCC--CCeEEcCChhhHhHHHHHHH
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKPE--LNIVSNASCTTNCLAPLAKV 154 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~~~--~~iVa~p~C~~t~~~l~l~p 154 (254)
.++|+||+|+|++.+++++++++++|++++..|++ +++.|..+||+|++.++.. .++|+|||||+|+++++|+|
T Consensus 62 -~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~~t~~~l~l~p 140 (334)
T PRK14874 62 -SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCSTIQMVVALKP 140 (334)
T ss_pred -cCCCEEEECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHHHHHHHHHHHH
Confidence 58999999999999999999999999933333665 2357899999999999752 27999999999999999999
Q ss_pred HhhhcCeeEEEEEeeeeccccccc------------cCCC--CCCCccccccccceeeccC-----CChhhhhhh-----
Q 025368 155 IHDKFGIVEGLMTTVHSITATQKT------------VDGP--SSKDWRGGRAASFNIIPSS-----TGAAKAVGK----- 210 (254)
Q Consensus 155 L~~~~~i~~~~v~~~~~~sg~~~~------------~d~~--~~~~~~~~~~~~~n~~p~~-----~~~~~e~~~----- 210 (254)
|+++++|++..++++|++||+++. .|.+ +..+.+++|++++|++|+. ++|++|+++
T Consensus 141 L~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~eE~ki~~el 220 (334)
T PRK14874 141 LHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNET 220 (334)
T ss_pred HHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHHHHHHHHHH
Confidence 999999999999999999996443 2211 1245568889999999997 678888433
Q ss_pred --hc--ccCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 211 --VL--PALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 211 --~l--~~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
++ |++ +++|+|||||++|||++++|++++++++.+|++++|+
T Consensus 221 ~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~ 266 (334)
T PRK14874 221 KKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILA 266 (334)
T ss_pred HHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 33 333 5999999999999999999999999999999999884
No 22
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=306.68 Aligned_cols=235 Identities=16% Similarity=0.199 Sum_probs=180.5
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+||||+|+ ||+|++|+|+|++||+|++..+..++..+ +.++.+.++++...++...+++. | .+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~------------sg~~~~~f~g~~~~v~~~~~~~~--~--~~ 65 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ------------AGGAAPSFGGKEGTLQDAFDIDA--L--KK 65 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh------------hCCcccccCCCcceEEecCChhH--h--cC
Confidence 79999999 99999999999999999955544432111 12222345555455543222333 3 57
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC---CCCCCeEEeeeCcccccCC--C--CeEEcCChhhHhHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP---SKDAPMFVVGVNENEYKPE--L--NIVSNASCTTNCLAPLAK 153 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~---~~~~~~~v~~vn~~~i~~~--~--~iVa~p~C~~t~~~l~l~ 153 (254)
+|+||+|+|+++++++++++.++|++.+|| |++ +++.|+++||+|+++++.. . ++|+||||++|+++++|+
T Consensus 66 ~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanPnC~tt~~~laL~ 145 (369)
T PRK06598 66 LDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGGNCTVSLMLMALG 145 (369)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcCChHHHHHHHHHH
Confidence 999999999999999999999999542555 555 4679999999999998751 1 589999999999999999
Q ss_pred HHhhhcCeeEEEEEeeeeccccccc------------cC-------------------------CCCCCCccccccccce
Q 025368 154 VIHDKFGIVEGLMTTVHSITATQKT------------VD-------------------------GPSSKDWRGGRAASFN 196 (254)
Q Consensus 154 pL~~~~~i~~~~v~~~~~~sg~~~~------------~d-------------------------~~~~~~~~~~~~~~~n 196 (254)
||+++++|+++.+++++++||+++. .+ +...+...|+++++||
T Consensus 146 PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN 225 (369)
T PRK06598 146 GLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGS 225 (369)
T ss_pred HHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCcccCCCccccc
Confidence 9999988999999999999998643 01 1111344677899999
Q ss_pred eeccC-----CChhhhhhh-------hccc--CCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 197 IIPSS-----TGAAKAVGK-------VLPA--LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 197 ~~p~~-----~~~~~e~~~-------~l~~--~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
++|++ .|+++|+++ +|.. -..++++||+|||+++||+.+++++|+++++.++++++|+
T Consensus 226 ~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~~L~ 297 (369)
T PRK06598 226 LIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILA 297 (369)
T ss_pred ccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 99998 356666554 4532 1235999999999999999999999999999999999874
No 23
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=2.7e-42 Score=305.00 Aligned_cols=232 Identities=16% Similarity=0.195 Sum_probs=180.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHc--CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQ--RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~--~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
++||+|+|+ ||+|++|+|+|.+ ||.+++..+.+.+ ..|+ .+.+++..+.+ ...+++. |
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~r---saGk------------~~~~~~~~~~v-~~~~~~~--~- 67 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASAR---SAGK------------KVTFEGRDYTV-EELTEDS--F- 67 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccC---CCCC------------eeeecCceeEE-EeCCHHH--H-
Confidence 579999999 9999999999998 8999988886542 1233 33333433333 2222222 2
Q ss_pred cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCcccccCC------CCeEEcCChhhHhHHH
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKPE------LNIVSNASCTTNCLAP 150 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~~~------~~iVa~p~C~~t~~~l 150 (254)
.++|+||+|+|++.++++++++.++|+++++.|++ +++.|+.+||+|++.++.. .++|+|||||+|++++
T Consensus 68 -~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t~~~l 146 (344)
T PLN02383 68 -DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTIICLM 146 (344)
T ss_pred -cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHHHHHH
Confidence 57999999999999999999999999955555776 4568999999999998851 2399999999999999
Q ss_pred HHHHHhhhcCeeEEEEEeeeeccccccccCCC------------CCCCccccccccceeeccCCC-----hh-hhhh---
Q 025368 151 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGP------------SSKDWRGGRAASFNIIPSSTG-----AA-KAVG--- 209 (254)
Q Consensus 151 ~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~------------~~~~~~~~~~~~~n~~p~~~~-----~~-~e~~--- 209 (254)
+|+||+++++|++..+++++++||+++..... +.+...++++.+||++|++|. ++ +|+.
T Consensus 147 aL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~ 226 (344)
T PLN02383 147 AVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVK 226 (344)
T ss_pred HHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCChHHHHHHH
Confidence 99999999999999999999999985533211 114567888999999999852 33 3333
Q ss_pred ---hhcccCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 210 ---KVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 210 ---~~l~~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+++..-..+++|||||||++|||++++|++++++++.++++++|+
T Consensus 227 e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~ 274 (344)
T PLN02383 227 ETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILA 274 (344)
T ss_pred HHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 333211235999999999999999999999999999999999884
No 24
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-41 Score=290.24 Aligned_cols=230 Identities=19% Similarity=0.277 Sum_probs=189.7
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
|.++|||| |+ |.+|++++++|.++ +|++..++.+... ..+.|+.+.|+|+.+.+.. .++.+|
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer-~fpv~~l~l~~s~-----------~~s~gk~i~f~g~~~~V~~---l~~~~f- 63 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQS-DLEIEQISIVEIE-----------PFGEEQGIRFNNKAVEQIA---PEEVEW- 63 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhc-CCchhheeecccc-----------cccCCCEEEECCEEEEEEE---CCccCc-
Confidence 77899999 99 99999999999988 5988877766411 1345668889998887743 333344
Q ss_pred cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEe---cCC--CCCCCeEEeeeCcccccC--CCCeEEcCChhhHhHHHHH
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAPLA 152 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi---S~~--~~~~~~~v~~vn~~~i~~--~~~iVa~p~C~~t~~~l~l 152 (254)
+++|++|+ ++...++++++.+.++|+ +|| |++ ++|+|++|||+|++.++. +.++|+||||++++++++|
T Consensus 64 -~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCsTi~l~~aL 139 (322)
T PRK06901 64 -ADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLALAL 139 (322)
T ss_pred -ccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHHHHHHHHHH
Confidence 68999999 899999999999999999 777 555 578999999999998874 2579999999999999999
Q ss_pred HHHhhhcCeeEEEEEeeeeccccccc-cCC-----------CCCCCccccccccceeeccCC-ChhhhhhhhcccCCCce
Q 025368 153 KVIHDKFGIVEGLMTTVHSITATQKT-VDG-----------PSSKDWRGGRAASFNIIPSST-GAAKAVGKVLPALNGKL 219 (254)
Q Consensus 153 ~pL~~~~~i~~~~v~~~~~~sg~~~~-~d~-----------~~~~~~~~~~~~~~n~~p~~~-~~~~e~~~~l~~~~~~v 219 (254)
+||++.++|++..++|||++||++.. +++ .+.. ...++++||++|+.. +-..|.+|++|++ .++
T Consensus 140 ~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~--~~~~~iAFNviP~ig~~m~~EtrKIl~~l-~~V 216 (322)
T PRK06901 140 APFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLD--EEEQRLAFDVFPANAQNLELQLQKIFPQL-ENV 216 (322)
T ss_pred HHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCC--CCceeeeccccccCCccHHHHHHHHhCCc-ccE
Confidence 99999999999999999999997431 121 1111 123689999999994 4667888999766 258
Q ss_pred eEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 220 TGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 220 ~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+.||+|||+++||+.+++++++++++.++++++|+
T Consensus 217 saTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~ 251 (322)
T PRK06901 217 TFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQ 251 (322)
T ss_pred EEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999874
No 25
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=2.2e-41 Score=291.88 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=173.0
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
.||+|+|+ ||+|.||+|+|.+||++++..+++.++ + ...+.+++ ..+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~------~-----------------------~~~~~~~~---~~~ 49 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR------K-----------------------DAAERAKL---LNA 49 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc------c-----------------------CcCCHhHh---hcC
Confidence 69999999 999999999999999999999865320 0 00112222 246
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeee---CcccccCCCCeEEcCChhhHhHHHHHHHHh
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGV---NENEYKPELNIVSNASCTTNCLAPLAKVIH 156 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~v---n~~~i~~~~~iVa~p~C~~t~~~l~l~pL~ 156 (254)
+|+||+|+|++.++++++.+.++|++++++|++ +++.+..+||+ +++.|++ +++|+|||||+|+++++|+||+
T Consensus 50 ~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~~-a~lIAnPgC~aTa~~LaL~PL~ 128 (310)
T TIGR01851 50 ADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIRN-SKRIANPGCYPTGFIALMRPLV 128 (310)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhcc-CCEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999965556887 45688999999 4566774 8999999999999999999999
Q ss_pred hhcCeeEEEEEeeeeccccccccCCCCCCCcc----ccccccceeeccC----CChhhhhhhhcccCCCceeEEEEEcee
Q 025368 157 DKFGIVEGLMTTVHSITATQKTVDGPSSKDWR----GGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGMAFRVPT 228 (254)
Q Consensus 157 ~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~----~~~~~~~n~~p~~----~~~~~e~~~~l~~~~~~v~~~~~~vP~ 228 (254)
++..|++..+++++++||.++.+.... ..+. |. ...+|+.||. |.|.+|+++.+... .++.||||++|+
T Consensus 129 ~~~li~~~~~~~~~a~SG~SGAGr~~~-~~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~~v~FtPhl~p~ 205 (310)
T TIGR01851 129 EAGILPADFPITINAVSGYSGGGKAMI-ADYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-LPPIFTPAVGNF 205 (310)
T ss_pred HcCCccccceEEEEeccccCccChhhh-HHhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-CCEEEEeEEccc
Confidence 987776654589999999766555433 2223 33 4567788876 56899999988654 469999999999
Q ss_pred CceeEEEEEEEe---cCCCCHHHHHHHhC
Q 025368 229 VDVSVVDLTVRL---EKDASYDEIKAAIK 254 (254)
Q Consensus 229 ~rG~~~~~~~~~---~~~~~~~~v~~~~~ 254 (254)
+||+++|+|+++ +++++.+|++++|+
T Consensus 206 ~RGil~Ti~~~l~~~~~~~~~~~~~~~~~ 234 (310)
T TIGR01851 206 AQGMAVTIPLHLQTLASKVSPADIHAALA 234 (310)
T ss_pred cCcEEEEEEEEeccCCCCCCHHHHHHHHH
Confidence 999999999999 78899999998874
No 26
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=2.5e-41 Score=293.49 Aligned_cols=217 Identities=12% Similarity=0.049 Sum_probs=174.4
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
||+||||+|+ ||+|++|+|+|.+||++++..+.+.. ++.+ .+.+.. |
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~-----------------~~~~------------~~~~~~-~-- 48 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK-----------------RKDA------------AARREL-L-- 48 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC-----------------CCcc------------cCchhh-h--
Confidence 3589999999 99999999999999999998876431 0001 011111 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeC---cccccCCCCeEEcCChhhHhHHHHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVN---ENEYKPELNIVSNASCTTNCLAPLAKV 154 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn---~~~i~~~~~iVa~p~C~~t~~~l~l~p 154 (254)
.++|+||+|+|++.++++++++.++|+++++.|++ +++.+..+||+| ++.++. +++|+|||||+|+++++|+|
T Consensus 49 ~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~-~~~IanPgC~~Ta~~laL~P 127 (313)
T PRK11863 49 NAADVAILCLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIAA-AKRVANPGCYPTGAIALLRP 127 (313)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhhc-CCeEEcCCcHHHHHHHHHHH
Confidence 47999999999999999999999999965556887 456889999996 566764 89999999999999999999
Q ss_pred HhhhcCeeEEEEEeeeeccccccccCCCCCCCcc--ccccccceeeccC----CChhhhhhhhcccCCCceeEEEEEcee
Q 025368 155 IHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWR--GGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGMAFRVPT 228 (254)
Q Consensus 155 L~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~--~~~~~~~n~~p~~----~~~~~e~~~~l~~~~~~v~~~~~~vP~ 228 (254)
|+++..+++...++++++||.++++.... ..+. +. .+.+|++||. |.|.+|+.+++..+ .++.|+||.+|+
T Consensus 128 L~~~~li~~~~~i~i~a~SG~SGAG~~~~-~~~~~~~~-~~~~n~~~Y~~~~~HrH~pEi~~~l~~~-~~~~F~Phl~p~ 204 (313)
T PRK11863 128 LVDAGLLPADYPVSINAVSGYSGGGKAMI-AAYEAAPD-GKAPAFRLYGLGLAHKHLPEMQAHAGLA-RRPIFTPSVGNF 204 (313)
T ss_pred HHHcCCcccCceEEEEEccccccCCccch-HHHhhhhh-hhccCeeeccCCcCCcchHHHHHHhccc-cCcEEEeeEccc
Confidence 99987776543478999988766655443 2334 44 5788999998 55899999998665 358899999999
Q ss_pred CceeEEEEEEEe---cCCCCHHHHHHHhC
Q 025368 229 VDVSVVDLTVRL---EKDASYDEIKAAIK 254 (254)
Q Consensus 229 ~rG~~~~~~~~~---~~~~~~~~v~~~~~ 254 (254)
+|||++|+|+++ +++++.+|++++|+
T Consensus 205 ~rGil~Ti~~~~~~~~~~~~~~~i~~~~~ 233 (313)
T PRK11863 205 RQGMLVTVPLHLRLLPGGPTAEDLHAALA 233 (313)
T ss_pred cCcEEEEEEEEecccCCCCCHHHHHHHHH
Confidence 999999999997 88899999999874
No 27
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=5.8e-41 Score=296.80 Aligned_cols=230 Identities=22% Similarity=0.307 Sum_probs=180.6
Q ss_pred EEEEEcc-CHHHHHHHHHHHc--CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 5 KIGINGF-GRIGRLVARVILQ--RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~--~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
||+|+|+ ||+|++|+++|.+ ||.+++..+.+.+ . .|+.+.+.+....+ .+.+.++ | .
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~---~------------~g~~~~~~~~~~~~-~~~~~~~--~--~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDR---S------------AGRKVTFKGKELEV-NEAKIES--F--E 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccc---c------------CCCeeeeCCeeEEE-EeCChHH--h--c
Confidence 6999999 9999999999998 7878876665432 1 22234444533333 2222222 3 5
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCcccccC--CCCeEEcCChhhHhHHHHHHHHh
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAPLAKVIH 156 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~~--~~~iVa~p~C~~t~~~l~l~pL~ 156 (254)
++|+||+|+|++.+++++++++++|++++..|++ +++.|+++||+|++.+++ ..++|+|||||+|+++++|+||+
T Consensus 61 ~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~t~~~l~l~pL~ 140 (339)
T TIGR01296 61 GIDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCSTIQMVVVLKPLH 140 (339)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHHHHHHHHHHHHH
Confidence 8999999999999999999999999933333554 346899999999999975 13499999999999999999999
Q ss_pred hhcCeeEEEEEeeeeccccccc------------cCCCCCCC-------ccccccccceeeccC-----CChhhhhhhhc
Q 025368 157 DKFGIVEGLMTTVHSITATQKT------------VDGPSSKD-------WRGGRAASFNIIPSS-----TGAAKAVGKVL 212 (254)
Q Consensus 157 ~~~~i~~~~v~~~~~~sg~~~~------------~d~~~~~~-------~~~~~~~~~n~~p~~-----~~~~~e~~~~l 212 (254)
++++|++..++++|++||+++. .+.+.... ..+++.+++|++|+. ++|++|+.++.
T Consensus 141 ~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~ 220 (339)
T TIGR01296 141 DEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKML 220 (339)
T ss_pred HhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCCHHHHHHH
Confidence 9999999999999999997442 12221111 567888999999995 48999977777
Q ss_pred ccCC-------CceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 213 PALN-------GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 213 ~~~~-------~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+|+. .+++|+|||||++|||++++|++++++++.++++++|+
T Consensus 221 ~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~ 269 (339)
T TIGR01296 221 FETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLK 269 (339)
T ss_pred HHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHh
Confidence 7653 36999999999999999999999999999999999884
No 28
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=9.5e-41 Score=293.87 Aligned_cols=234 Identities=16% Similarity=0.194 Sum_probs=183.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCC-CcccC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEI-PWAET 81 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~ 81 (254)
+||||+|+ |.+|++++++|.+|++|++..+..++..+ +.|+.+.++++...+.. .++. +| .
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~------------s~g~~~~f~~~~~~v~~---~~~~~~~--~ 63 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ------------LGQAAPSFGGTTGTLQD---AFDIDAL--K 63 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh------------hCCCcCCCCCCcceEEc---Ccccccc--c
Confidence 48999999 99999999999999999987776664222 23334455555554432 2222 33 6
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEe---cCC--CCCCCeEEeeeCcccccCC--CCe--EEcCChhhHhHHHHH
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNENEYKPE--LNI--VSNASCTTNCLAPLA 152 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi---S~~--~~~~~~~v~~vn~~~i~~~--~~i--Va~p~C~~t~~~l~l 152 (254)
++|+||+|+|..+++++.+++.++|+..+|| |++ ++|+|++|||+|++.+... ..+ |+||||++++++++|
T Consensus 64 ~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianPNCst~~l~~aL 143 (366)
T TIGR01745 64 ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSL 143 (366)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECcCHHHHHHHHHH
Confidence 8999999999999999999999999332777 555 5789999999999988641 456 899999999999999
Q ss_pred HHHhhhcCeeEEEEEeeeeccccccc------------cCC-------------------------CCCCCccccccccc
Q 025368 153 KVIHDKFGIVEGLMTTVHSITATQKT------------VDG-------------------------PSSKDWRGGRAASF 195 (254)
Q Consensus 153 ~pL~~~~~i~~~~v~~~~~~sg~~~~------------~d~-------------------------~~~~~~~~~~~~~~ 195 (254)
+||+++++|+++.++|||++||++.. .+. .......|+++++|
T Consensus 144 ~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iaf 223 (366)
T TIGR01745 144 GGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAG 223 (366)
T ss_pred HHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCCcccCCCcccc
Confidence 99999999999999999999998621 110 01134468889999
Q ss_pred eeeccCC-----Chhhhhhh-------hccc-CCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 196 NIIPSST-----GAAKAVGK-------VLPA-LNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 196 n~~p~~~-----~~~~e~~~-------~l~~-~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
|++|++. |+++|+++ +|.. -+.++++||+|||++|||+.+++++|+++++.++++++|+
T Consensus 224 NvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~L~ 295 (366)
T TIGR01745 224 SLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIR 295 (366)
T ss_pred cccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHH
Confidence 9999983 56666655 4532 1346999999999999999999999999999999999873
No 29
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=287.34 Aligned_cols=233 Identities=24% Similarity=0.327 Sum_probs=179.1
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHc-CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQ-RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~-~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|+||||+|+ |.+|++++++|.+ |+.++...+.... +.+|+. .+.|++..+.+.. .-.+..+|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~--rSaG~~-----------~~~f~~~~~~v~~-~~~~~~~~-- 64 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASA--RSAGKK-----------YIEFGGKSIGVPE-DAADEFVF-- 64 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecc--cccCCc-----------cccccCccccCcc-cccccccc--
Confidence 479999999 9999999999999 7777755544322 223331 1445554444321 11333445
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEe---cCC--CCCCCeEEeeeCcccccC--CCC-eEEcCChhhHhHHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII---SAP--SKDAPMFVVGVNENEYKP--ELN-IVSNASCTTNCLAPLA 152 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi---S~~--~~~~~~~v~~vn~~~i~~--~~~-iVa~p~C~~t~~~l~l 152 (254)
.++|+||+|.|..+++++.+++.++|+ +|| |++ ++|+|++|||||.+++.. +.+ +|+||||++..++++|
T Consensus 65 ~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCst~~l~~aL 142 (334)
T COG0136 65 SDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLAL 142 (334)
T ss_pred ccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECCChHHHHHHHHH
Confidence 589999999999999999999999999 888 555 468999999999988764 233 9999999999999999
Q ss_pred HHHhhhcCeeEEEEEeeeecccccc-ccCCCC---------CCCccccccccceeeccCC-----Chhhhhhhh------
Q 025368 153 KVIHDKFGIVEGLMTTVHSITATQK-TVDGPS---------SKDWRGGRAASFNIIPSST-----GAAKAVGKV------ 211 (254)
Q Consensus 153 ~pL~~~~~i~~~~v~~~~~~sg~~~-~~d~~~---------~~~~~~~~~~~~n~~p~~~-----~~~~e~~~~------ 211 (254)
+||+++++|+++.++|||++||++. .++... ..-.-.+.+++||++||+. |+++|++|+
T Consensus 143 ~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~K 222 (334)
T COG0136 143 KPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRK 222 (334)
T ss_pred HHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccHHHHHHHHHHHH
Confidence 9999999999999999999999865 333211 0001115679999999994 477777664
Q ss_pred -cccCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHh
Q 025368 212 -LPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAI 253 (254)
Q Consensus 212 -l~~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~ 253 (254)
|+.-..++++||+|||+++||+..++++|+++++.+|+++.+
T Consensus 223 Ilg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~ 265 (334)
T COG0136 223 ILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL 265 (334)
T ss_pred HhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHH
Confidence 443345799999999999999999999999999999998543
No 30
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=1.3e-39 Score=289.31 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=171.2
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCE-EEEEeecCCCCCCCcccC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~ 81 (254)
+||+|+|+ ||+|++++|+|.+||++++..+...+ +..|+.. .... + .+ .+. ...+ ...+.+++ .+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~--~sagk~~-~~~~--~--~l--~~~~~~~~-~~~~~~~~---~~ 67 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSR--ESAGKPV-SEVH--P--HL--RGLVDLNL-EPIDEEEI---AE 67 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccc--hhcCCCh-HHhC--c--cc--cccCCcee-ecCCHHHh---hc
Confidence 49999999 99999999999999999998763322 1124422 1100 0 11 111 1112 11222222 24
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CC-------------------CCCeEEeeeCcccccCCCCeEE
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SK-------------------DAPMFVVGVNENEYKPELNIVS 139 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~-------------------~~~~~v~~vn~~~i~~~~~iVa 139 (254)
++|+||+|+|++.+.++++++.++|++++++|++ ++ +.+..+||+|++.+++ +++|+
T Consensus 68 ~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~-~~iia 146 (346)
T TIGR01850 68 DADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKG-ARLIA 146 (346)
T ss_pred CCCEEEECCCchHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCC-CcEEE
Confidence 7999999999999999999999999854445766 22 3667889999999985 89999
Q ss_pred cCChhhHhHHHHHHHHhhhcCee--EEEEEeeeeccccccccCCCCCCCccccccccceeeccC---CChhhhhhhhccc
Q 025368 140 NASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPA 214 (254)
Q Consensus 140 ~p~C~~t~~~l~l~pL~~~~~i~--~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~---~~~~~e~~~~l~~ 214 (254)
|||||+|+++++|+||+++++|+ +..+++++++||+++......+..+. ..|++||. |.|.+|+.+.+..
T Consensus 147 nPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~-----~~~~~~y~~~~h~h~~Ei~~~l~~ 221 (346)
T TIGR01850 147 NPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEV-----NENLRPYKVTGHRHTPEIEQELGR 221 (346)
T ss_pred cCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhh-----cCCeeeeccCCcCcHHHHHHHHHH
Confidence 99999999999999999998886 56777888888886644322222222 34555555 5588998887765
Q ss_pred C---CCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 215 L---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 215 ~---~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+ +.+++||||+||++|||++++|++++++++.++++++|+
T Consensus 222 ~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~ 264 (346)
T TIGR01850 222 LAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYE 264 (346)
T ss_pred hcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHH
Confidence 4 235999999999999999999999999999999999874
No 31
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-38 Score=282.52 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=178.0
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe-eeeeeccccccccccceeecCCeeEEECC--EEEEEeecCCCCCC
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT-YMFKYDSVHGQWKHHELKVKDDKTLLFGE--KPVTVFGVRNPEEI 76 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~-~~~~~~s~~g~~~~~~v~~~~g~~l~~~~--~~~~~~~~~~~~~~ 76 (254)
|||+||+|+|+ |++|++|+++|.+||+++++.+ .+. +..|+.. ..+....+ .-.+.+ ..+.+. ..+++.+
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~---~~~G~~~-~~~~~~~~-~~~~~~~~~~~~v~-~~~~~~~ 74 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE---RSAGKTY-GEAVRWQL-DGPIPEEVADMEVV-STDPEAV 74 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh---hhcCCcc-cccccccc-cccccccccceEEE-eCCHHHh
Confidence 78899999999 9999999999999999999988 432 3345533 11100000 000011 112222 2334432
Q ss_pred CcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCccccc----------CCCCeEEcCCh
Q 025368 77 PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYK----------PELNIVSNASC 143 (254)
Q Consensus 77 ~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~----------~~~~iVa~p~C 143 (254)
.++|+||+|+|++.+.++++++.++|+++++.|++ .++.|..+|++|.+.+. ++.++|+||||
T Consensus 75 ----~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C 150 (349)
T PRK08664 75 ----DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNC 150 (349)
T ss_pred ----cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCH
Confidence 47999999999999999999999999965555776 23467788888875441 12579999999
Q ss_pred hhHhHHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccC----CChhhhhhhhcccC----
Q 025368 144 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAVGKVLPAL---- 215 (254)
Q Consensus 144 ~~t~~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~----~~~~~e~~~~l~~~---- 215 (254)
|+|+++++|+||++ ++|++..+++++++||+++.... ...+++|++||. |.|.+|+.+++...
T Consensus 151 ~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~~--------~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~ 221 (349)
T PRK08664 151 STIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGVP--------SMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGK 221 (349)
T ss_pred HHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccch--------hhhhhcCcccccCchhhhhhHHHHHHhhhccccc
Confidence 99999999999999 89999999999999997654321 235899999998 45788888877653
Q ss_pred ----CCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 216 ----NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 216 ----~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
..+++|+||+||++|||++++|++++++++.+|++++|+
T Consensus 222 ~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~ 264 (349)
T PRK08664 222 IVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALE 264 (349)
T ss_pred ccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 556999999999999999999999999999999999884
No 32
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=2.6e-38 Score=280.77 Aligned_cols=235 Identities=18% Similarity=0.185 Sum_probs=173.9
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
|+||+|+|+ |++|++++++|.+||+++++.+..++ ..|+.. .... + .+ .+.....+. +.++.. ..
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~---~~g~~l-~~~~--~--~~--~~~~~~~~~--~~~~~~--~~ 67 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS---SAGKPL-SDVH--P--HL--RGLVDLVLE--PLDPEI--LA 67 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc---ccCcch-HHhC--c--cc--ccccCceee--cCCHHH--hc
Confidence 479999999 99999999999999999998887632 123221 0000 0 01 111011121 122222 25
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC-C--C-C------------------CCeEEeeeCcccccCCCCeEE
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-S--K-D------------------APMFVVGVNENEYKPELNIVS 139 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~-~--~-~------------------~~~~v~~vn~~~i~~~~~iVa 139 (254)
++|+||+|+|++.+.+++++++++|+.+++.|++ + + + .+..+||+|++.+++ +++|+
T Consensus 68 ~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~-~~iIa 146 (343)
T PRK00436 68 GADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKG-ARLIA 146 (343)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcC-CCEEE
Confidence 7999999999999999999999999844444666 2 2 2 567889999999985 79999
Q ss_pred cCChhhHhHHHHHHHHhhhcCee--EEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCC
Q 025368 140 NASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 217 (254)
Q Consensus 140 ~p~C~~t~~~l~l~pL~~~~~i~--~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~ 217 (254)
||||++|+++++|+||+++++|+ +..+++++++||+++......+..+..++..+||+.|+ .|.+|+.+++..+.+
T Consensus 147 nPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h--~h~~Ei~~~l~~~~~ 224 (343)
T PRK00436 147 NPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGH--RHTPEIEQELSALAG 224 (343)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCC--CCHHHHHHHHHHhcC
Confidence 99999999999999999988887 78888999999987643322222223333345555544 478998887765422
Q ss_pred ceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 218 KLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 218 ~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+++||||+||++|||++++|++++++++.+|++++|+
T Consensus 225 ~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~ 261 (343)
T PRK00436 225 EVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYE 261 (343)
T ss_pred CEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999884
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=6e-38 Score=278.47 Aligned_cols=231 Identities=20% Similarity=0.263 Sum_probs=176.5
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEEC---C--EEEEEeecCCCCCCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFG---E--KPVTVFGVRNPEEIP 77 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~---~--~~~~~~~~~~~~~~~ 77 (254)
+||+|+|+ |++|++|+++|.+||+++++.+.... +..|+.. ..+. + ...++ + ..+.+ ...+++.
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~--~~~g~~~-~~~~--~--~~~~~~~~~~~~~~~~-~~~~~~~-- 70 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP--RSAGKRY-GEAV--K--WIEPGDMPEYVRDLPI-VEPEPVA-- 70 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh--hhcCCcc-hhhc--c--ccccCCCccccceeEE-EeCCHHH--
Confidence 49999999 99999999999999999999875432 2234432 1111 0 00001 1 11222 2222322
Q ss_pred cccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCcccccC---------CCCeEEcCChhh
Q 025368 78 WAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKP---------ELNIVSNASCTT 145 (254)
Q Consensus 78 ~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~~---------~~~iVa~p~C~~ 145 (254)
| .++|+||+|+|++.+.++.+++.++|+++++.|++ +++.|.++|++|.+.+.. ++++|+|||||+
T Consensus 71 ~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~ 148 (341)
T TIGR00978 71 S--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTT 148 (341)
T ss_pred h--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHH
Confidence 2 57999999999999999999999999965555777 455788889888654321 367999999999
Q ss_pred HhHHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccC----CChhhhhhhhcccCC-----
Q 025368 146 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALN----- 216 (254)
Q Consensus 146 t~~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~----~~~~~e~~~~l~~~~----- 216 (254)
|+++++|+||+++++|++..+++++++||+++.... ...+++|++||. |.|.+|+.++++.+.
T Consensus 149 t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~--------~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~ 220 (341)
T TIGR00978 149 AGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVP--------SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIE 220 (341)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCc--------cchhhCCeEecCcHHHHHHHHHHHHHhCccccCccc
Confidence 999999999999999999888999999998654221 135899999998 447789999998652
Q ss_pred ---CceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 217 ---GKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 217 ---~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
.+++|+||+||++|||++++|++++++++.++++++|+
T Consensus 221 ~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~ 261 (341)
T TIGR00978 221 PAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALK 261 (341)
T ss_pred CCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999999999999999999999999884
No 34
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=3.2e-38 Score=282.31 Aligned_cols=231 Identities=13% Similarity=0.063 Sum_probs=165.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
++||+|+|+ ||+|++|+|+|.+||++++..+.+.+ ..|+.. .... + .+ .+.....+...+.+ +| .
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~---saG~~i-~~~~--~--~l--~~~~~~~~~~~~~~--~~--~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR---KAGQSF-GSVF--P--HL--ITQDLPNLVAVKDA--DF--S 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh---hcCCCc-hhhC--c--cc--cCccccceecCCHH--Hh--c
Confidence 479999999 99999999999999999999987643 234432 1100 0 11 11112211111111 22 5
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCC--------CC-----------eEEeeeCcccccCCCCeEE
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKD--------AP-----------MFVVGVNENEYKPELNIVS 139 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~--------~~-----------~~v~~vn~~~i~~~~~iVa 139 (254)
++|+||+|+|++.+.++++.+ ++|++++++|++ +++ .| .-+||+|++++++ +++|+
T Consensus 104 ~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~~-~~iIA 181 (381)
T PLN02968 104 DVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIKS-ARLVA 181 (381)
T ss_pred CCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhcC-CCEEE
Confidence 799999999999999999985 788855555776 222 23 2236778888874 89999
Q ss_pred cCChhhHhHHHHHHHHhhhcCe--eEEEEEeeeeccccccccCCCCCCCccccccccceeeccC---CChhhhhhhhccc
Q 025368 140 NASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPA 214 (254)
Q Consensus 140 ~p~C~~t~~~l~l~pL~~~~~i--~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~---~~~~~e~~~~l~~ 214 (254)
|||||+|+++++|+||+++++| ++..+++++++||+++..... +.+. +..+|+.||. |.|.+|+++.+..
T Consensus 182 nPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~----~l~~-e~~~n~~~y~~~~h~h~pEie~~~~~ 256 (381)
T PLN02968 182 NPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEA----NLYT-EIAEGIGAYGVTRHRHVPEIEQGLAD 256 (381)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchh----hhHH-HhcccceeeccCCCCCcchHHHHHHH
Confidence 9999999999999999999889 556777888888776544322 1232 3455666776 5577786654322
Q ss_pred C---CCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 215 L---NGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 215 ~---~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+ +.+++||||+||++|||+.++|++++++++.++++++|+
T Consensus 257 ~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~ 299 (381)
T PLN02968 257 AAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLK 299 (381)
T ss_pred HhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHH
Confidence 2 335999999999999999999999999999999999874
No 35
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-32 Score=244.17 Aligned_cols=228 Identities=27% Similarity=0.353 Sum_probs=170.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccc------cccccccceeecCCeeEE-ECCEEEEEeecCCCCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSV------HGQWKHHELKVKDDKTLL-FGEKPVTVFGVRNPEE 75 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~------~g~~~~~~v~~~~g~~l~-~~~~~~~~~~~~~~~~ 75 (254)
|+||||+|+|++|+.+++++.++|+++++++.....+.. +| +. .... .+. ... +++..+.+. .+.++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G-~~-~~~~-~~~-~~~~~~~~~i~V~--~~~~e 74 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKG-YP-LYVA-DPE-REKAFEEAGIPVA--GTIED 74 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcC-CC-cccc-Ccc-ccccccCCceEEc--CChhH
Confidence 479999999999999999999999999999875321100 01 00 0000 000 010 222234442 23334
Q ss_pred CCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC-CCCC--CeEEeeeCcccccCCCCeEEcCChhhHhHHHHH
Q 025368 76 IPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP-SKDA--PMFVVGVNENEYKPELNIVSNASCTTNCLAPLA 152 (254)
Q Consensus 76 ~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~-~~~~--~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~l 152 (254)
+ ..++|+||+|+|.+.+.+.++.++++|+ ++|+++. ..+. ..++||+|.+.+.+ .++|+||+|++|+++++|
T Consensus 75 l---~~~vDVVIdaT~~~~~~e~a~~~~~aGk-~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~~l~~~l 149 (341)
T PRK04207 75 L---LEKADIVVDATPGGVGAKNKELYEKAGV-KAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTTGLCRTL 149 (341)
T ss_pred h---hccCCEEEECCCchhhHHHHHHHHHCCC-EEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHHHHHHHH
Confidence 3 2579999999999999999999999996 3555444 2222 24799999999975 458999999999999999
Q ss_pred HHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccC----CChhhhhhhhcccCCCceeEEEEEcee
Q 025368 153 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGMAFRVPT 228 (254)
Q Consensus 153 ~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~----~~~~~e~~~~l~~~~~~v~~~~~~vP~ 228 (254)
+||+++|||+++.+|++|+.|+ + .++ .+....|++|+. ..+.+++.+++|+++ ++.+|+|||+
T Consensus 150 ~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~avrVPv 216 (341)
T PRK04207 150 CALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTMAVKVPT 216 (341)
T ss_pred HHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEEEEEcCC
Confidence 9999999999999999999763 1 122 245677787652 223578889999986 9999999999
Q ss_pred CceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 229 VDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 229 ~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
++||+.+++++|+++++.||++++|+
T Consensus 217 ~~gh~~~v~v~l~~~~t~eev~~~l~ 242 (341)
T PRK04207 217 TLMHMHSVNVELKKPVTKEEVLEALE 242 (341)
T ss_pred CCceEEEEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999874
No 36
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=99.97 E-value=4e-30 Score=224.83 Aligned_cols=221 Identities=25% Similarity=0.320 Sum_probs=176.5
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceeEEeeeee------------eccccccccccceeecCCeeEEECCEEEEEeecCCC
Q 025368 6 IGINGFGRIGRLVARVILQRDDVELVATYMFK------------YDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 73 (254)
Q Consensus 6 V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~------------~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~ 73 (254)
|||+|+|++|+.++|.+.++|+++++++.... |++.++ + .+....+.+..+.+. .++
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~-~--------~~~~~~~~~~~l~v~--g~~ 69 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAA-S--------EEFIPRFEEAGIEVA--GTL 69 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEee-c--------CCcceEeccCceEec--CCH
Confidence 69999999999999999988999999976422 111110 0 000111212123332 235
Q ss_pred CCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCC--CCeEEeeeCcccccCCCCeEEcCChhhHhHHHH
Q 025368 74 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLAPL 151 (254)
Q Consensus 74 ~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~--~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~ 151 (254)
+++ ..++|+|++|+|.+..++..+.+++.|.|.+++|++.++ .+.|++++|.+.+.+ .++|+|.+|++|++++.
T Consensus 70 eeL---l~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~-~~~vs~aSCtTn~Lap~ 145 (333)
T TIGR01546 70 EDL---LEKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG-KDYVRVVSCNTTGLVRT 145 (333)
T ss_pred HHH---hhcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc-CceEEecCchHhhHHHH
Confidence 555 357999999999999999999999999998888999655 468999999999875 45999999999999999
Q ss_pred HHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeecc-CC---ChhhhhhhhcccCCCceeEEEEEce
Q 025368 152 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMAFRVP 227 (254)
Q Consensus 152 l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~-~~---~~~~e~~~~l~~~~~~v~~~~~~vP 227 (254)
+++|.++|||+.+.+|++|+ ++.++ +++.+| +.|++|. .. .|.+.+.+++|+++ +...++|||
T Consensus 146 ~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~AvrVP 212 (333)
T TIGR01546 146 LNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFVVP 212 (333)
T ss_pred HHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEEeC
Confidence 99999999999999999997 54332 445565 6899998 22 46789999999997 999999999
Q ss_pred eCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 228 ~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+..+|+.+++++++++++.|||+++|+
T Consensus 213 t~~vs~~dl~v~l~~~~t~eeV~~~l~ 239 (333)
T TIGR01546 213 TTLMHVHSIMVELKKPVTKDDIIDILE 239 (333)
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHH
Confidence 999999999999999999999999875
No 37
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=99.96 E-value=1e-29 Score=207.52 Aligned_cols=229 Identities=14% Similarity=0.121 Sum_probs=163.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
.+||+.+|| ||+|++|++++.+||++++..++++. ..|+.. . +. . .+.. ...-++..|...+.- ..
T Consensus 19 ~~rv~LlGArGYTGknlv~Lin~HPylevthvssre---l~Gqkl-~-~y--t--k~ei---qy~~lst~D~~klee-~~ 85 (340)
T KOG4354|consen 19 DIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRE---LAGQKL-E-VY--T--KLEI---QYADLSTVDAVKLEE-PH 85 (340)
T ss_pred CceEEEEeccccchhhHHHHhcCCCceEEEeeehhh---hcCCcc-c-Cc--c--hhhe---eecccchhhHHHhhc-CC
Confidence 379999999 99999999999999999999988764 335533 0 00 0 0100 000011112211110 13
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCCCCCCC--eEE---eeeC-cccccCCCCeEEcCChhhHhHHHHHH
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAP--MFV---VGVN-ENEYKPELNIVSNASCTTNCLAPLAK 153 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~~~~~~--~~v---~~vn-~~~i~~~~~iVa~p~C~~t~~~l~l~ 153 (254)
.+|....++|..+-+.++.......-|-++| |++..-+| .++ ||+| |+.|++ ++.|+|||||+|.+.+.|-
T Consensus 86 avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~n-a~~iaNPGCYaTgsQl~l~ 164 (340)
T KOG4354|consen 86 AVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKN-ARLIANPGCYATGSQLPLV 164 (340)
T ss_pred ceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHhh-hhhccCCCcccccCcccch
Confidence 4688888888877776666544333333444 88843334 566 5678 899986 8999999999999999999
Q ss_pred HHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccC---CChhhhhhhhcccCCCceeEEEEEceeCc
Q 025368 154 VIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKLTGMAFRVPTVD 230 (254)
Q Consensus 154 pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~---~~~~~e~~~~l~~~~~~v~~~~~~vP~~r 230 (254)
||.+...... .+.++||.++++..++. .. ....++.|++||. |.|.+|+.+-+ ...|.|+||..|+|+
T Consensus 165 Pllk~i~g~p----~ifgvSGySGAGtkpsp-kN-d~~~l~nnlipY~ltdHiHerEIs~r~---k~~VaF~PHv~qwfq 235 (340)
T KOG4354|consen 165 PLLKAILGKP----EIFGVSGYSGAGTKPSP-KN-DYSELANNLIPYGLTDHIHEREISQRS---KVTVAFTPHVMQWFQ 235 (340)
T ss_pred HHHHHhcCCc----ceeeeccccCCCCCCCC-cc-CHHHHhcCCccccccccchhHhHHHhh---CCceeechhHHHHhh
Confidence 9998755543 35677777666666653 22 2346889999998 55788887744 557999999999999
Q ss_pred eeEEEEEEEecCCCCHHHHHHHhC
Q 025368 231 VSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 231 G~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
|+..|+|+.+++.++.+|++++|+
T Consensus 236 Gi~lTi~vpmkksv~~~elr~lyk 259 (340)
T KOG4354|consen 236 GIQLTIYVPMKKSVRTEELRQLYK 259 (340)
T ss_pred hceEEEEEeecCcccHHHHHHHHH
Confidence 999999999999999999999885
No 38
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-29 Score=209.75 Aligned_cols=219 Identities=68% Similarity=1.072 Sum_probs=201.3
Q ss_pred eeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 33 TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 33 ~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
.+.++|||++|+|. +.+..+.+ .+..+|..+.++++.++..++|...+.|++.+.++.+.+.+.+..++++|+++++|
T Consensus 27 ~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~~~gakkvii 104 (285)
T KOG0657|consen 27 AYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVII 104 (285)
T ss_pred cccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccccccccccccccccceEEEe
Confidence 46677999999998 77776665 45556888999998899999998889999999999999999999999999999999
Q ss_pred cCCCCCCCeEEeeeCcccccCCCCeEEcCChhhHhHHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCcccccc
Q 025368 113 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRA 192 (254)
Q Consensus 113 S~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~ 192 (254)
|+++.|.|.++++||.+.+.+...+|+|.+|++.++++..+-++++|+|.+..++++|+.+.+++.+|+|++..|+.++.
T Consensus 105 saps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~ 184 (285)
T KOG0657|consen 105 SAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRR 184 (285)
T ss_pred ccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeeccccccccCcccccccccch
Confidence 99988999999999999998766799999999999999999999999999999999999999999999999999999998
Q ss_pred ccceeeccCCChhhhhhhhcccCCCceeEEEEEceeCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 193 ASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 193 ~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
..+|++|...|.++.+.+.+||+.++++.++++||+. ....+++++++++.+.|+++++.+
T Consensus 185 a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk 245 (285)
T KOG0657|consen 185 ALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVK 245 (285)
T ss_pred hhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHH
Confidence 8899999999999999999999999999999999999 999999999999999999988753
No 39
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.94 E-value=9.8e-27 Score=182.35 Aligned_cols=138 Identities=58% Similarity=1.007 Sum_probs=121.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe-----------eeeeeccccccccccceeecCCeeEEECCEEEEEeecCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT-----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN 72 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~-----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~ 72 (254)
+||||+|+|++|+.++|++..+|+++++++ ++++|||.+|+|. ..+..+.+ .+.++|+.++++...+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d 78 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD 78 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence 599999999999999999999999999985 4566899999997 77776666 7889999999988889
Q ss_pred CCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCC--CCeEEeeeCcccccCCCCeEEcCCh
Q 025368 73 PEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD--APMFVVGVNENEYKPELNIVSNASC 143 (254)
Q Consensus 73 ~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~--~~~~v~~vn~~~i~~~~~iVa~p~C 143 (254)
|++++|...++|+|++|||.+.+++.++.++++|+|+|++|++.++ .+++|+++|.+.+.++.++|++++|
T Consensus 79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 9999998889999999999999999999999999999999999654 7999999999999874599999999
No 40
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.9e-26 Score=189.79 Aligned_cols=232 Identities=17% Similarity=0.222 Sum_probs=164.9
Q ss_pred CCCcEEE-EEcc-CHHHHHHHHHHHcCCCceeEEeeeeee-c----cccccccccceeecCCeeEEECCEEEEEeecCCC
Q 025368 1 MGKVKIG-INGF-GRIGRLVARVILQRDDVELVATYMFKY-D----SVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 73 (254)
Q Consensus 1 M~~~~V~-IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~-~----s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~ 73 (254)
|.-.|+| |+|+ |.+|++.+-+|.+||+|++.-+...+. + -..|+|.|.... .. . -..+.+ .+.++
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~l-p~--~----~~e~~V-~ec~~ 72 (361)
T KOG4777|consen 1 MALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLL-PE--S----AHEYTV-EECTA 72 (361)
T ss_pred CCcccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccc-cc--h----hhhhhH-hhcCh
Confidence 6666887 9999 999999999999999999877632211 0 011333211100 00 0 011222 22445
Q ss_pred CCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC---C--CCCCeEEeeeCcccccC-----------CCCe
Q 025368 74 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---S--KDAPMFVVGVNENEYKP-----------ELNI 137 (254)
Q Consensus 74 ~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~--~~~~~~v~~vn~~~i~~-----------~~~i 137 (254)
+.+ .++|+||+.++...+.+.-+.+.++|. +|+|.. + +++|++||++|+|+++. +..+
T Consensus 73 ~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~i 146 (361)
T KOG4777|consen 73 DSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAI 146 (361)
T ss_pred hhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceE
Confidence 543 689999999999999999999999998 777554 2 45899999999998863 4679
Q ss_pred EEcCChhhHhHHHHHHHHhhhc-CeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChh----hhhhhhc
Q 025368 138 VSNASCTTNCLAPLAKVIHDKF-GIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAA----KAVGKVL 212 (254)
Q Consensus 138 Va~p~C~~t~~~l~l~pL~~~~-~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~----~e~~~~l 212 (254)
|+|+||++.++..+|+||+.+| .|.+..++++|++||++-... .+ .-.+..|++|++.+.. .|..++|
T Consensus 147 I~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apg-v~------~vdildnilp~iggee~k~ewet~kiL 219 (361)
T KOG4777|consen 147 IANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPG-VE------LVDILDNILPGIGGEENKFEWETAKIL 219 (361)
T ss_pred EecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCC-ch------HHHHHHhhcCCCCccchhhhHHHHHhh
Confidence 9999999999999999999998 578878889999999754211 11 1246779999986631 2333444
Q ss_pred ccC-----------CCceeEEEEEceeCceeEEEEEEEecCC--CCHHHHHHHh
Q 025368 213 PAL-----------NGKLTGMAFRVPTVDVSVVDLTVRLEKD--ASYDEIKAAI 253 (254)
Q Consensus 213 ~~~-----------~~~v~~~~~~vP~~rG~~~~~~~~~~~~--~~~~~v~~~~ 253 (254)
-.. +..++..|-|+|+..||+..+.+.|+.+ .+.+++..++
T Consensus 220 ~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l 273 (361)
T KOG4777|consen 220 FSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLL 273 (361)
T ss_pred hccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHH
Confidence 221 1237789999999999999999999843 3567776654
No 41
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.92 E-value=7.1e-24 Score=166.40 Aligned_cols=138 Identities=58% Similarity=0.982 Sum_probs=121.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe----------eeeeeccccccccccceeecCCeeEEECCEEEEEeecCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT----------YMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP 73 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~----------~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~ 73 (254)
+||||+|+|++|+.+++.+.++++++++.+ ++++|||.+|+|. ..+..+.+ .+.++|+.+.+++..+|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~p 78 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERDP 78 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCCh
Confidence 499999999999999999999999999885 4557899999997 66665554 67889998999988889
Q ss_pred CCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCC-CCeEEeeeCcccccCCCCeEEcCCh
Q 025368 74 EEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKD-APMFVVGVNENEYKPELNIVSNASC 143 (254)
Q Consensus 74 ~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~-~~~~v~~vn~~~i~~~~~iVa~p~C 143 (254)
.+++|...++|+|++||+.+.+++.++.++++|+|+|++|++.++ .+++|+++|.+.+.++.++|+|.+|
T Consensus 79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred HHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999998889999999999999999999999999999999999655 3589999999999865569999999
No 42
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.74 E-value=1.3e-18 Score=132.46 Aligned_cols=116 Identities=27% Similarity=0.325 Sum_probs=82.1
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
||+|+|+ ||+|++|+++|.+||++++..+.+.+. ..|+.. ........ ....+.+.. .+.+.+ .++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~--~~g~~~-~~~~~~~~-----~~~~~~~~~-~~~~~~----~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR--SAGKPL-SEVFPHPK-----GFEDLSVED-ADPEEL----SDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT--TTTSBH-HHTTGGGT-----TTEEEBEEE-TSGHHH----TTE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc--ccCCee-ehhccccc-----cccceeEee-cchhHh----hcC
Confidence 8999999 999999999999999999999887652 235533 11110000 112233321 233332 689
Q ss_pred cEEEEecCCccCHHHHHHHHHCCCCeEEecCC---CCCCCeEEeeeCcccccC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGAKKVIISAP---SKDAPMFVVGVNENEYKP 133 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~---~~~~~~~v~~vn~~~i~~ 133 (254)
|+||+|+|++.+++++++++++|++++..|++ +++.|..+||+|+++|++
T Consensus 68 Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~~ 120 (121)
T PF01118_consen 68 DVVFLALPHGASKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIKK 120 (121)
T ss_dssp SEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHHC
T ss_pred CEEEecCchhHHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHcc
Confidence 99999999999999999999999954445666 356899999999999863
No 43
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.73 E-value=3.2e-17 Score=129.82 Aligned_cols=106 Identities=66% Similarity=0.986 Sum_probs=98.9
Q ss_pred HHHHHHHHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhhhcccCCCceeEEEEEce
Q 025368 148 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227 (254)
Q Consensus 148 ~~l~l~pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~~l~~~~~~v~~~~~~vP 227 (254)
+++.+++|+++|||+++.+|++|+.+..|+..|+++ .+++.+|..+.|++|...++.+.+.+++|++++++..+++|||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP 79 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP 79 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence 578999999999999999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred eCceeEEEEEEEecCCCCHHHHHHHhC
Q 025368 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254 (254)
Q Consensus 228 ~~rG~~~~~~~~~~~~~~~~~v~~~~~ 254 (254)
+..||+.+++++++++++.|||+++|+
T Consensus 80 t~~~s~~dl~~~l~k~~t~eeV~~~~~ 106 (157)
T PF02800_consen 80 TPNVSLHDLTVELEKPVTKEEVNEALK 106 (157)
T ss_dssp SSSEEEEEEEEEESSSS-HHHHHHHHH
T ss_pred ecccCceEEEEecccchhhhhhhhhhh
Confidence 999999999999999999999999874
No 44
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.64 E-value=3.9e-16 Score=134.94 Aligned_cols=152 Identities=21% Similarity=0.195 Sum_probs=108.3
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCC----CCC
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNP----EEI 76 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~----~~~ 76 (254)
|+++||||+|.|.+|..++..+.++++++++++.....++ .|... ..+- | +.... .+. ++.
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es-~gla~----A~~~-------G--i~~~~-~~ie~LL~~~ 66 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPES-DGLAR----ARRL-------G--VATSA-EGIDGLLAMP 66 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHH----HHHc-------C--CCccc-CCHHHHHhCc
Confidence 4578999999999999999888889999999988663221 11100 0001 1 11110 111 111
Q ss_pred CcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEe-cCCCCCCCeEEeeeCcccccC--CCCeEEcCChhhHhHHHHHH
Q 025368 77 PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAPLAK 153 (254)
Q Consensus 77 ~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi-S~~~~~~~~~v~~vn~~~i~~--~~~iVa~p~C~~t~~~l~l~ 153 (254)
+| .++|+||+|||+..+.+++++++++|+ .|| ..+....|++||++|.+++.. ..++|+||||.++.++.+|+
T Consensus 67 ~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~Al~ 142 (302)
T PRK08300 67 EF--DDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVS 142 (302)
T ss_pred CC--CCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHHHhc
Confidence 22 579999999999999999999999998 555 111125799999999887754 36899999999999999999
Q ss_pred HHhhhcCeeEEEEEeeeecc
Q 025368 154 VIHDKFGIVEGLMTTVHSIT 173 (254)
Q Consensus 154 pL~~~~~i~~~~v~~~~~~s 173 (254)
|+.+. .+.+.. .+++++|
T Consensus 143 ~v~~~-~~~eIv-at~~s~s 160 (302)
T PRK08300 143 RVAPV-HYAEIV-ASIASKS 160 (302)
T ss_pred ccCcC-ceeeee-eeehhhc
Confidence 96543 555543 6788888
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.55 E-value=9.4e-15 Score=119.06 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=75.5
Q ss_pred HHHHhhh-cCeeEEEEEeeeeccccccc------------cCCCCCCCccccccccceeeccCC----Chhhhhhhhccc
Q 025368 152 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSSKDWRGGRAASFNIIPSST----GAAKAVGKVLPA 214 (254)
Q Consensus 152 l~pL~~~-~~i~~~~v~~~~~~sg~~~~------------~d~~~~~~~~~~~~~~~n~~p~~~----~~~~e~~~~l~~ 214 (254)
|+||+++ ++++++.+++++++||+++. ..+.......+..++++|++||.. .|.+|+.+.+..
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899998 88999999999999998764 011111233455689999999993 465555443321
Q ss_pred -------C--CCceeEEEEEceeCceeEEEEEEEec-CCCCHHHHHHHh
Q 025368 215 -------L--NGKLTGMAFRVPTVDVSVVDLTVRLE-KDASYDEIKAAI 253 (254)
Q Consensus 215 -------~--~~~v~~~~~~vP~~rG~~~~~~~~~~-~~~~~~~v~~~~ 253 (254)
+ ..++++||||||++|||++++|++++ ++.+.++++++|
T Consensus 81 ~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~ 129 (184)
T PF02774_consen 81 IAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAF 129 (184)
T ss_dssp HHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHH
T ss_pred hccccceeeccccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHH
Confidence 1 22799999999999999999999995 777777777765
No 46
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.44 E-value=6.2e-13 Score=114.75 Aligned_cols=152 Identities=21% Similarity=0.235 Sum_probs=107.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
++||||+|+|.+|..++..+.+.++++++++.....++. +... ..+. | +..+. .+.+.+ ....+
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~-~la~----A~~~-------G--i~~~~-~~~e~l-l~~~d 64 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESD-GLAR----AREL-------G--VKTSA-EGVDGL-LANPD 64 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccH-HHHH----HHHC-------C--CCEEE-CCHHHH-hcCCC
Confidence 379999999999999987777788999999876532210 1000 0011 1 11111 122221 01146
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe-cCCCCCCCeEEeeeCcccccC--CCCeEEcCChhhHhHHHHHHHHhhhc
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII-SAPSKDAPMFVVGVNENEYKP--ELNIVSNASCTTNCLAPLAKVIHDKF 159 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi-S~~~~~~~~~v~~vn~~~i~~--~~~iVa~p~C~~t~~~l~l~pL~~~~ 159 (254)
+|+||+|||+....+++..++++|+ .|+ -.+....|+++|++|.+++.. +.++|++|+|.++.+..+|.++++..
T Consensus 65 IDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~~al~r~~d~~ 142 (285)
T TIGR03215 65 IDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAISRVAPVH 142 (285)
T ss_pred CCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999998 444 122225789999999877653 36899999999999999999999876
Q ss_pred CeeEEEEEeeeeccc
Q 025368 160 GIVEGLMTTVHSITA 174 (254)
Q Consensus 160 ~i~~~~v~~~~~~sg 174 (254)
.++ .+.++++.|+
T Consensus 143 ~~~--iv~ti~s~S~ 155 (285)
T TIGR03215 143 YAE--IVASIASRSA 155 (285)
T ss_pred cEE--EEEEEEeecc
Confidence 553 3467898885
No 47
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.07 E-value=1.7e-09 Score=90.98 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=117.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEE-CCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLF-GEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~~ 80 (254)
||||+|+|+ |++|+++++++.+.|++++++...+......|+ +.| .+.. +...+.+. .++... .
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~--------d~g-e~~g~~~~gv~v~--~~~~~~---~ 67 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGS--------DAG-ELAGLGLLGVPVT--DDLLLV---K 67 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcccccc--------chh-hhccccccCceee--cchhhc---c
Confidence 589999999 999999999999999999999876542211111 122 1211 11123332 222222 3
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCCCCCCCeEEeeeCcccccCCCCeEEcCChhh--HhH---HHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNENEYKPELNIVSNASCTT--NCL---APLAK 153 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~--t~~---~l~l~ 153 (254)
.++|+++|.|-+..+.+.++.+++.|.+ .|| ++++++.... + .+..+ +..+|-+||.+- +.+ +--++
T Consensus 68 ~~~DV~IDFT~P~~~~~~l~~~~~~~~~-lVIGTTGf~~e~~~~---l-~~~a~-~v~vv~a~NfSiGvnll~~l~~~aa 141 (266)
T COG0289 68 ADADVLIDFTTPEATLENLEFALEHGKP-LVIGTTGFTEEQLEK---L-REAAE-KVPVVIAPNFSLGVNLLFKLAEQAA 141 (266)
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCC-eEEECCCCCHHHHHH---H-HHHHh-hCCEEEeccchHHHHHHHHHHHHHH
Confidence 6799999999999999999999999975 555 6665331000 0 11122 467888888773 222 22222
Q ss_pred HHhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeeccCCChhhhhhh----hcc-cCCCceeEEEEEcee
Q 025368 154 VIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGK----VLP-ALNGKLTGMAFRVPT 228 (254)
Q Consensus 154 pL~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~~~~~~~e~~~----~l~-~~~~~v~~~~~~vP~ 228 (254)
.++..|.|+- +..+|. .+.|.||++....+..++...-. +...+... +-+ .-++.+-++.+|.|-
T Consensus 142 k~l~~~DiEI--iE~HHr-----~K~DAPSGTAl~lae~ia~~~~~---~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ 211 (266)
T COG0289 142 KVLDDYDIEI--IEAHHR-----HKKDAPSGTALKLAEAIAEARGQ---DLKDEAVYGREGATGARKEGEIGIHSVRGGD 211 (266)
T ss_pred HhcCCCCEEe--hhhhcc-----cCCCCCcHHHHHHHHHHHHhhcc---ccccceeecccCCcCCCCCCCceeEEeecCC
Confidence 3333444542 345665 36788887665555443332210 00000000 000 112247788888887
Q ss_pred CceeEEEEE
Q 025368 229 VDVSVVDLT 237 (254)
Q Consensus 229 ~rG~~~~~~ 237 (254)
.-|+-..+.
T Consensus 212 ivG~H~V~F 220 (266)
T COG0289 212 IVGEHEVIF 220 (266)
T ss_pred cceeEEEEE
Confidence 777665543
No 48
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.05 E-value=5.2e-10 Score=84.95 Aligned_cols=112 Identities=24% Similarity=0.292 Sum_probs=71.3
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
|++|+|+ |++|..+++.|.++|++++..+..+. ...|+.. . ..+..+ .. . .+...+.+. |...++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~--~~~~~~~----~-~~~~~~--~~--~-~~~~~~~~~--~~~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA--RSAGKRV----S-EAGPHL--KG--E-VVLELEPED--FEELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech--hhcCcCH----H-HHCccc--cc--c-cccccccCC--hhhcCC
Confidence 6899998 99999999999999999998885532 1123211 0 000000 00 1 111112222 222579
Q ss_pred cEEEEecCCccCHHHHH---HHHHCCCCeEEe--cCC---CCCCCeEEeeeCccccc
Q 025368 84 EYVVESTGVFTDKDKAA---AHLKGGAKKVII--SAP---SKDAPMFVVGVNENEYK 132 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~---~~~~~G~~~~vi--S~~---~~~~~~~v~~vn~~~i~ 132 (254)
|+||.|+|.....+.+. ..++.|+ ++| |+. +++.+..+|++|+++++
T Consensus 67 DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 67 DIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred CEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence 99999999998887544 3346787 555 544 34678899999988764
No 49
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.84 E-value=2.3e-08 Score=86.15 Aligned_cols=204 Identities=18% Similarity=0.208 Sum_probs=107.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+||+|+|+ |.+|+.+++.+.++|+++++++..+......++.. ..+ .+ .....+.++ .+.+++ ...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~-~~~---~~----~~~~gv~~~--~d~~~l---~~~ 68 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA-GEL---AG----IGKVGVPVT--DDLEAV---ETD 68 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH-HHh---cC----cCcCCceee--CCHHHh---cCC
Confidence 69999997 99999999999999999999987632111111111 000 00 000013332 334444 246
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCCCCCCCeEEeeeCcccccC-CCCeEEcCChhh--HhHHHH---HHH
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTT--NCLAPL---AKV 154 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~~~~~~~~v~~vn~~~i~~-~~~iVa~p~C~~--t~~~l~---l~p 154 (254)
+|+|++|+++....+.+..++++|+. +|+ ++.+.+.- -++. +..+. ...++..||-+. +.+... +..
T Consensus 69 ~DvVIdfT~p~~~~~~~~~al~~g~~-vVigttg~~~e~~---~~l~-~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~ 143 (266)
T TIGR00036 69 PDVLIDFTTPEGVLNHLKFALEHGVR-LVVGTTGFSEEDK---QELA-DLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAK 143 (266)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCC-EEEECCCCCHHHH---HHHH-HHHhcCCccEEEECcccHHHHHHHHHHHHHHH
Confidence 89999999999999999999999985 444 33321100 0010 11111 245666666553 222222 223
Q ss_pred HhhhcCeeEEEEEeeeeccccccccCCCCCCCccccccccceeecc---CCChhhhhhhhcccC-CCceeEEEEEceeCc
Q 025368 155 IHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS---STGAAKAVGKVLPAL-NGKLTGMAFRVPTVD 230 (254)
Q Consensus 155 L~~~~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~p~---~~~~~~e~~~~l~~~-~~~v~~~~~~vP~~r 230 (254)
++..+.++ .+.+.|. ++.|.||++....++.++.+.-.. ...+.++ .+-..- ...+.++.+|.|-..
T Consensus 144 ~l~~~die--I~E~HH~-----~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~--~~~~~r~~~~i~i~s~R~g~i~ 214 (266)
T TIGR00036 144 YLGDYDIE--IIELHHR-----HKKDAPSGTALKTAEMIAEARGERLKNVAVTERE--GLTGERGREEIGIHAVRGGDVV 214 (266)
T ss_pred hccCCCEE--eeeeccC-----CCCCCCCHHHHHHHHHHHHhhccccccCcccccc--CCcCCCCCCccceEEEecCCce
Confidence 33334333 2235555 367888876555444333322110 0000000 000000 124678899999888
Q ss_pred eeEE
Q 025368 231 VSVV 234 (254)
Q Consensus 231 G~~~ 234 (254)
|.-.
T Consensus 215 g~h~ 218 (266)
T TIGR00036 215 GEHT 218 (266)
T ss_pred EEEE
Confidence 8643
No 50
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.69 E-value=4.1e-08 Score=86.13 Aligned_cols=86 Identities=27% Similarity=0.401 Sum_probs=63.3
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|+++||+|+|+|++|+..++.+.++|+++++++..+.... + .. . ...++...+.+++ .
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~---~-----~~--~---------~~~v~~~~d~~e~---l 58 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAE---T-----LD--T---------ETPVYAVADDEKH---L 58 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHH---H-----Hh--h---------cCCccccCCHHHh---c
Confidence 7889999999999999999999999999999987653100 0 00 0 0112211222222 3
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCC
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
.++|+|+.|+|+....+.+..++++|+.
T Consensus 59 ~~iDVViIctPs~th~~~~~~~L~aG~N 86 (324)
T TIGR01921 59 DDVDVLILCMGSATDIPEQAPYFAQFAN 86 (324)
T ss_pred cCCCEEEEcCCCccCHHHHHHHHHcCCC
Confidence 5799999999999999999999999983
No 51
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.67 E-value=7.7e-08 Score=82.46 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=109.9
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
|+||+|+|+ |.+|+.+++.+.++|+++++++.....+. . . .. ....+..+ .+.+++ ..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~----~-----~-----~~--~~~~i~~~--~dl~~l---l~ 59 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP----L-----V-----GQ--GALGVAIT--DDLEAV---LA 59 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc----c-----c-----cc--CCCCcccc--CCHHHh---cc
Confidence 369999999 99999999999999999999987543110 0 0 00 00012221 233333 24
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCCCCCCCeEEeeeCcccccCCCCeEEcCChhh--HhHHHHHHHHhh
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNENEYKPELNIVSNASCTT--NCLAPLAKVIHD 157 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~--t~~~l~l~pL~~ 157 (254)
++|+|++++++....+.+..++++|+. +|+ ++++.+.. -++.. ..++..++..||+.- ..+...+.-+.+
T Consensus 60 ~~DvVid~t~p~~~~~~~~~al~~G~~-vvigttG~s~~~~---~~l~~--aa~~~~v~~s~n~s~g~~~~~~l~~~aa~ 133 (257)
T PRK00048 60 DADVLIDFTTPEATLENLEFALEHGKP-LVIGTTGFTEEQL---AELEE--AAKKIPVVIAPNFSIGVNLLMKLAEKAAK 133 (257)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCCC-EEEECCCCCHHHH---HHHHH--HhcCCCEEEECcchHHHHHHHHHHHHHHH
Confidence 689999999998889999999999985 444 33332110 01111 212477888888873 333333333333
Q ss_pred h---cCeeEEEEEeeeeccccccccCCCCCCCccccccccceee-cc--CCChhhhhhhhc-ccCCCceeEEEEEceeCc
Q 025368 158 K---FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNII-PS--STGAAKAVGKVL-PALNGKLTGMAFRVPTVD 230 (254)
Q Consensus 158 ~---~~i~~~~v~~~~~~sg~~~~~d~~~~~~~~~~~~~~~n~~-p~--~~~~~~e~~~~l-~~~~~~v~~~~~~vP~~r 230 (254)
. |.++- +.+.|. .+.|.||++.....+.++.+.- .+ ...+.+ .... +.....+.++.+|.|-..
T Consensus 134 ~l~~~d~ei--~E~HH~-----~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~i~s~R~g~~~ 204 (257)
T PRK00048 134 YLGDYDIEI--IEAHHR-----HKVDAPSGTALKLAEAIAEARGRDLKEVAVYGR--EGATGARVKGEIGIHSVRGGDIV 204 (257)
T ss_pred hcCCCCEEE--EEccCC-----CCCCCCCHHHHHHHHHHHHhhcccccccceecc--CCccCCcCCCCccEEEEEcCCce
Confidence 3 33442 235565 3678888765444433322110 00 000000 0000 111235778889999888
Q ss_pred eeEEE
Q 025368 231 VSVVD 235 (254)
Q Consensus 231 G~~~~ 235 (254)
|.-..
T Consensus 205 g~h~v 209 (257)
T PRK00048 205 GEHEV 209 (257)
T ss_pred EEEEE
Confidence 86443
No 52
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.65 E-value=7.7e-09 Score=78.85 Aligned_cols=98 Identities=31% Similarity=0.362 Sum_probs=63.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
|||+|+|+ |.+|+.+++.+.++++++++++..+...+..|+-. +.+ .+ .....+.++ .+.+++ .+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~-g~~---~~----~~~~~~~v~--~~l~~~---~~~ 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDV-GEL---AG----IGPLGVPVT--DDLEEL---LEE 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBC-HHH---CT----SST-SSBEB--S-HHHH---TTH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchh-hhh---hC----cCCcccccc--hhHHHh---ccc
Confidence 59999999 99999999999999999999988765322233321 110 11 001112332 334443 355
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP 115 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~ 115 (254)
+|+++|++.+....+.++.+++.|++ +|+ +++
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~g~~-~ViGTTG~ 101 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKHGVP-LVIGTTGF 101 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHHT-E-EEEE-SSS
T ss_pred CCEEEEcCChHHhHHHHHHHHhCCCC-EEEECCCC
Confidence 99999999888888999999999984 444 444
No 53
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.53 E-value=1.5e-07 Score=81.06 Aligned_cols=92 Identities=23% Similarity=0.316 Sum_probs=63.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
|+||||+|+|.+|+.+++.|.++|+++++.+.... ....+. .. .+ +..+.++ .|.+++ ..+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~--~~~~~~--------~~-~~---~~~~~~~--~d~~~l---~~~ 61 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE--HSIDAV--------RR-AL---GEAVRVV--SSVDAL---PQR 61 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC--CCHHHH--------hh-hh---ccCCeee--CCHHHh---ccC
Confidence 36999999999999999999999999998887432 110000 00 11 0012333 234444 246
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
+|+|++|+|+....+++..++++|+..++.|
T Consensus 62 ~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s 92 (265)
T PRK13303 62 PDLVVECAGHAALKEHVVPILKAGIDCAVIS 92 (265)
T ss_pred CCEEEECCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999999999988999999999998644443
No 54
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.42 E-value=2.9e-07 Score=78.29 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=63.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC--CCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGFGRIGRLVARVILQR--DDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~--p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
++||||+|+|.+|+.+++.|... +.+++++++.+..+ +. . .+ .+. .++. .+++++ ..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~----~~--------~--~~--~~~-~~~~--~~l~~l--l~ 60 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAAD----LP--------P--AL--AGR-VALL--DGLPGL--LA 60 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHH----HH--------H--Hh--hcc-Cccc--CCHHHH--hh
Confidence 58999999999999999998764 34888887644211 00 0 11 111 2222 234443 12
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
..+|+|++|.++..-+++.+.++++|++.+++|
T Consensus 61 ~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 61 WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 579999999999999999999999999877764
No 55
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.40 E-value=4.1e-07 Score=74.85 Aligned_cols=90 Identities=27% Similarity=0.436 Sum_probs=62.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC-CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD-DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p-~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
++|+|+|+|.+|+.+++++.+.+ +|+++.++.+..+ +-. .... .+++... .+.+++ ..+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~e----k~~----~~~~----~~~~~~~-----s~ide~---~~~ 60 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEE----KAK----ELEA----SVGRRCV-----SDIDEL---IAE 60 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHH----HHH----HHHh----hcCCCcc-----ccHHHH---hhc
Confidence 48999999999999999999774 5777777643211 100 0001 1122111 223333 368
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
+|++++|+++.+.++++++++++|++.+|+|
T Consensus 61 ~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~S 91 (255)
T COG1712 61 VDLVVEAASPEAVREYVPKILKAGIDVIVMS 91 (255)
T ss_pred cceeeeeCCHHHHHHHhHHHHhcCCCEEEEe
Confidence 9999999999999999999999999877773
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.34 E-value=5.8e-07 Score=77.62 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=63.7
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHc-CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQ-RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
|+++||||+|+|++|+.+++.|.+ .+++++++++.+..+. ...+ . . . ++. ...+ .+.+++
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~-a~~~-----a--~--~--~g~--~~~~--~~~eel--- 64 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQR-HADF-----I--W--G--LRR--PPPV--VPLDQL--- 64 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHH-HHHH-----H--H--h--cCC--Cccc--CCHHHH---
Confidence 667899999999999999999987 4889998886543111 0000 0 0 0 010 1111 234444
Q ss_pred cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
..++|+|+.|+|+....++...++++|+..++.|
T Consensus 65 l~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 65 ATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred hcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEec
Confidence 2468999999999999999999999997544333
No 57
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.16 E-value=3.4e-06 Score=72.68 Aligned_cols=90 Identities=26% Similarity=0.372 Sum_probs=61.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC-CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD-DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p-~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+||||+|+|.+|+.+++.|.+.+ ++++.+++.+..+. ...+. . . + + ...+ .+.+++ ..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~-a~~~a-------~--~--~-~--~~~~--~~~~el---l~~ 61 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEK-AENLA-------S--K--T-G--AKAC--LSIDEL---VED 61 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHH-HHHHH-------H--h--c-C--CeeE--CCHHHH---hcC
Confidence 69999999999999999988764 78888876543111 00000 0 0 1 1 1222 233444 257
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
+|+|++|+++....++.+.++++|+..+++|
T Consensus 62 ~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 62 VDLVVECASVNAVEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred CCEEEEcCChHHHHHHHHHHHHcCCCEEEEc
Confidence 9999999999999999999999998654444
No 58
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=3e-06 Score=68.74 Aligned_cols=135 Identities=22% Similarity=0.239 Sum_probs=86.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC-CCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc--
Q 025368 3 KVKIGINGFGRIGRLVARVILQR-DDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA-- 79 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-- 79 (254)
+.||+|+|.|++|..|+--++.| ..+|..+.......|. |- .+.. .| | +.. ..+-++|.
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sd-gl------araa--rl---g--v~t----t~egv~~ll~ 65 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSD-GL------ARAA--RL---G--VAT----THEGVIGLLN 65 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCcc-HH------HHHH--hc---C--Ccc----hhhHHHHHHh
Confidence 57999999999999998877777 5678777665532221 10 0000 11 1 111 11111110
Q ss_pred ---cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCCCCeEEeeeCcccccCCCCeEEcCChhhHhHHHHHHHHh
Q 025368 80 ---ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIH 156 (254)
Q Consensus 80 ---~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~t~~~l~l~pL~ 156 (254)
+.+.|+||+++..+...+.++++.++|++.+.++ +..-.|.++|-+|.++-.+ +.-|+.-.|-..+.++.++...
T Consensus 66 ~p~~~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paaigp~vvp~~n~~eh~~-a~nvnmvtcggqatipiv~avs 143 (310)
T COG4569 66 MPEFADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAAIGPYVVPVVNLEEHVD-ALNVNMVTCGGQATIPIVAAVS 143 (310)
T ss_pred CCCCCCcceEEeccccchhhcchHhHHhcCCceeecc-hhccCCeeccccchHHhcC-CCCcceEeecCcccchhhhhhh
Confidence 2467899999999999999999999999655552 1122578889898554332 5566667777777777766665
Q ss_pred h
Q 025368 157 D 157 (254)
Q Consensus 157 ~ 157 (254)
+
T Consensus 144 r 144 (310)
T COG4569 144 R 144 (310)
T ss_pred h
Confidence 4
No 59
>PLN02775 Probable dihydrodipicolinate reductase
Probab=98.00 E-value=5.8e-05 Score=65.09 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=76.6
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCC--cc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIP--WA 79 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~ 79 (254)
.+||.|+|+ |.+|+++++.+.+ ++++++.......+ |... ...+.|..+.++...|.++.- -+
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~---~~~~----------~~~~~g~~v~~~~~~dl~~~l~~~~ 76 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPA---GVGV----------TVEVCGVEVRLVGPSEREAVLSSVK 76 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccc---cccc----------cceeccceeeeecCccHHHHHHHhh
Confidence 479999999 9999999999999 89999986543211 2111 001222235554222332220 00
Q ss_pred cCCCc-EEEEecCCccCHHHHHHHHHCCCCeEEe--cCCCCCCCeEEeeeCcccccCCCCeEEcCChhh
Q 025368 80 ETGAE-YVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNENEYKPELNIVSNASCTT 145 (254)
Q Consensus 80 ~~~~D-vv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~ 145 (254)
.+.+| +++|.+.+....+.++.+++.|++ +|+ ++++.+. +....-+++..++-.||.+-
T Consensus 77 ~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~-~VvGTTG~~~e~------l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 77 AEYPNLIVVDYTLPDAVNDNAELYCKNGLP-FVMGTTGGDRDR------LLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHCCCC-EEEECCCCCHHH------HHHHHhcCCccEEEECcccH
Confidence 12588 999999999999999999999986 444 5554321 11000012467888888774
No 60
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=97.94 E-value=4.3e-05 Score=60.97 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=61.7
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
|+++.+-|+|+ |..|+.|++.+++.|.|.-+.+..++. . . ....++.+. ...+.+ ...+++.-.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~-~-----~----d~at~k~v~--q~~vDf---~Kl~~~a~~ 80 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRE-L-----P----DPATDKVVA--QVEVDF---SKLSQLATN 80 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEecc-C-----C----Cccccceee--eEEech---HHHHHHHhh
Confidence 67789999999 999999999999999998777666541 1 0 111121111 111111 112222111
Q ss_pred cCCCcEEEEecCC---------------ccCHHHHHHHHHCCCCeEEe
Q 025368 80 ETGAEYVVESTGV---------------FTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 80 ~~~~Dvv~~a~~~---------------~~s~~~~~~~~~~G~~~~vi 112 (254)
..+.|+.|.|++. ++.++.++.+.+.||+.+++
T Consensus 81 ~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvL 128 (238)
T KOG4039|consen 81 EQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVL 128 (238)
T ss_pred hcCCceEEEeecccccccccCceEeechHHHHHHHHHHHhCCCeEEEE
Confidence 3589999999885 23345567778899998886
No 61
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.89 E-value=9.7e-06 Score=60.83 Aligned_cols=86 Identities=27% Similarity=0.381 Sum_probs=60.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcC-CCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQR-DDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+||||+|+|.+|+..++.+.++ |++++++++....+. ..++ .... + +..+ .|.+++- ...+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~-~~~~-----~~~~-------~--~~~~--~~~~~ll-~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER-AEAF-----AEKY-------G--IPVY--TDLEELL-ADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH-HHHH-----HHHT-------T--SEEE--SSHHHHH-HHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH-HHHH-----HHHh-------c--ccch--hHHHHHH-Hhhc
Confidence 5999999999999999888877 889999987653211 0000 0001 1 1233 2333331 1247
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
+|+|+.|+|+....+++..++++|.
T Consensus 63 ~D~V~I~tp~~~h~~~~~~~l~~g~ 87 (120)
T PF01408_consen 63 VDAVIIATPPSSHAEIAKKALEAGK 87 (120)
T ss_dssp ESEEEEESSGGGHHHHHHHHHHTTS
T ss_pred CCEEEEecCCcchHHHHHHHHHcCC
Confidence 9999999999999999999999998
No 62
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.87 E-value=2.5e-05 Score=71.78 Aligned_cols=92 Identities=20% Similarity=0.354 Sum_probs=59.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCC---------CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecC
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 71 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p---------~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 71 (254)
|+++||||+|+|.+|+.++++|.+|+ +++++++..+... +. .+ ....+ ...+ .
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~----~~--------~~--~~~~~--~~~~--~ 62 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE----KD--------RG--VDLPG--ILLT--T 62 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh----hc--------cC--CCCcc--ccee--C
Confidence 77899999999999999999998774 5778887654311 00 00 00001 1121 2
Q ss_pred CCCCCCcccCCCcEEEEecCC-ccCHHHHHHHHHCCCCeEEec
Q 025368 72 NPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~-~~s~~~~~~~~~~G~~~~viS 113 (254)
+.+++- ...++|+|++|++. ....+++.+++++|+ -|++
T Consensus 63 d~~~ll-~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVt 102 (426)
T PRK06349 63 DPEELV-NDPDIDIVVELMGGIEPARELILKALEAGK--HVVT 102 (426)
T ss_pred CHHHHh-hCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEE
Confidence 333331 12468999999876 345788889999997 4553
No 63
>PRK11579 putative oxidoreductase; Provisional
Probab=97.75 E-value=6.1e-05 Score=67.26 Aligned_cols=87 Identities=25% Similarity=0.328 Sum_probs=60.2
Q ss_pred CC-CcEEEEEccCHHHHH-HHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCc
Q 025368 1 MG-KVKIGINGFGRIGRL-VARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 78 (254)
Q Consensus 1 M~-~~~V~IvG~G~~G~~-l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 78 (254)
|+ ++||||+|+|.+|+. .++.+...|+++++++.....+ +. . . . +.+ ..++ .|.+++-
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~----~~-----~--~--~--~~~--~~~~--~~~~ell- 60 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDAT----KV-----K--A--D--WPT--VTVV--SEPQHLF- 60 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHH----HH-----H--h--h--CCC--Ccee--CCHHHHh-
Confidence 54 479999999999985 6788888899999998754211 00 0 0 0 111 1222 2333331
Q ss_pred ccCCCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 79 AETGAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 79 ~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
...++|+|+.|+|+....+++..++++|+
T Consensus 61 ~~~~vD~V~I~tp~~~H~~~~~~al~aGk 89 (346)
T PRK11579 61 NDPNIDLIVIPTPNDTHFPLAKAALEAGK 89 (346)
T ss_pred cCCCCCEEEEcCCcHHHHHHHHHHHHCCC
Confidence 12468999999999999999999999996
No 64
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.62 E-value=0.00011 Score=65.50 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=57.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC---------CceeEEeeeeeec--cccccccccceeecCCeeEEECCEEEEEee--
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVATYMFKYD--SVHGQWKHHELKVKDDKTLLFGEKPVTVFG-- 69 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p---------~~~v~~~~~~~~~--s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~-- 69 (254)
++||+|+|+|.+|+.+++.|.+++ +++++++...... ...|... ..+.. ...-.+ .+..+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~-~~~~~----~~~~~~-~~~~~~~~ 75 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDL-ELALK----VKEETG-KLADYPEG 75 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCH-HHHHH----HHhccC-CcccCccc
Confidence 589999999999999999998764 6888887653200 0001000 00000 000000 011110
Q ss_pred --cCCCCCCCcccCCCcEEEEecCCcc-----CHHHHHHHHHCCCCeEEecC
Q 025368 70 --VRNPEEIPWAETGAEYVVESTGVFT-----DKDKAAAHLKGGAKKVIISA 114 (254)
Q Consensus 70 --~~~~~~~~~~~~~~Dvv~~a~~~~~-----s~~~~~~~~~~G~~~~viS~ 114 (254)
..+.+++ ....++|+|++|+|+.. +.+++..++++|+ -|+++
T Consensus 76 ~~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVta 124 (341)
T PRK06270 76 GGEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTS 124 (341)
T ss_pred cccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcC
Confidence 0122222 11146899999999754 3678899999998 55543
No 65
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=97.48 E-value=0.00024 Score=60.99 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=72.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec----CCCCCCCc
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV----RNPEEIPW 78 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~----~~~~~~~~ 78 (254)
+||.|+|+ |.+|+++++.+.+ ++++++....-.. . .+. +.+ .+ .+..+++... .+++++
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~-~-~~~--------~~~-~~--~g~~v~v~~~~~~~~~l~~~-- 64 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGE-E-EAE--------NEA-EV--AGKEILLHGPSEREARIGEV-- 64 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEcccc-c-ccc--------chh-hh--cccceeeeccccccccHHHH--
Confidence 58999999 9999999999888 8999998522110 0 011 111 11 1223444211 223332
Q ss_pred ccCC-Cc-EEEEecCCccCHHHHHHHHHCCCCeEEe--cCCCCCCCeEEeeeCcccccCCCCeEEcCChhh
Q 025368 79 AETG-AE-YVVESTGVFTDKDKAAAHLKGGAKKVII--SAPSKDAPMFVVGVNENEYKPELNIVSNASCTT 145 (254)
Q Consensus 79 ~~~~-~D-vv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~~ 145 (254)
... +| +++|.|.+....+.++.+.+.|++ +|+ |+++.+.- -++ .+.. +..++..||.+-
T Consensus 65 -~~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~-~ViGTTG~~~~~~---~~l--~~~~-~i~~l~apNfSi 127 (275)
T TIGR02130 65 -FAKYPELICIDYTHPSAVNDNAAFYGKHGIP-FVMGTTGGDREAL---AKL--VADA-KHPAVIAPNMAK 127 (275)
T ss_pred -HhhcCCEEEEECCChHHHHHHHHHHHHCCCC-EEEcCCCCCHHHH---HHH--HHhc-CCCEEEECcccH
Confidence 123 88 999999999999999999999985 444 55532210 001 1112 367888888774
No 66
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.46 E-value=3.3e-05 Score=57.97 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=48.9
Q ss_pred ccCHHHHHHHHHHHcCC---CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCC-CcccCCCcE
Q 025368 10 GFGRIGRLVARVILQRD---DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEI-PWAETGAEY 85 (254)
Q Consensus 10 G~G~~G~~l~~~L~~~p---~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~Dv 85 (254)
|+|.+|+.++++|.++. +++++++..+. .-....+. . . ..+ .... .+.+++ ++ .+.|+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~----~-~------~~~--~~~~--~~~~~~~~~--~~~dv 62 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWA----A-S------FPD--EAFT--TDLEELIDD--PDIDV 62 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHH----H-H------HTH--SCEE--SSHHHHHTH--TT-SE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhh----h-h------ccc--cccc--CCHHHHhcC--cCCCE
Confidence 78999999999999886 68888887653 10000000 0 0 000 0111 223322 11 26999
Q ss_pred EEEecCCccCHHHHHHHHHCCCC
Q 025368 86 VVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 86 v~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
|++|+++....++.+.++++|+.
T Consensus 63 vVE~t~~~~~~~~~~~~L~~G~~ 85 (117)
T PF03447_consen 63 VVECTSSEAVAEYYEKALERGKH 85 (117)
T ss_dssp EEE-SSCHHHHHHHHHHHHTTCE
T ss_pred EEECCCchHHHHHHHHHHHCCCe
Confidence 99999999999999999999983
No 67
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.45 E-value=0.00012 Score=64.96 Aligned_cols=90 Identities=23% Similarity=0.298 Sum_probs=60.4
Q ss_pred CCCcEEEEEccC-HHHHHHHHHHHcCCC-ceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCc
Q 025368 1 MGKVKIGINGFG-RIGRLVARVILQRDD-VELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 78 (254)
Q Consensus 1 M~~~~V~IvG~G-~~G~~l~~~L~~~p~-~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 78 (254)
|+++||||+|+| ..++..+..+.+.++ ++++++....... ...+ . . . ++. . ..+ .+.+++-
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~-a~~~-----a-~---~--~~~-~-~~~--~~~~~ll- 63 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPER-AEAF-----A-E---E--FGI-A-KAY--TDLEELL- 63 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHH-HHHH-----H-H---H--cCC-C-ccc--CCHHHHh-
Confidence 778999999995 666779999999887 6888886543110 0000 0 0 1 111 1 222 2333331
Q ss_pred ccCCCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 79 AETGAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 79 ~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
...++|+|+-|+|+....+.+.+++++|+
T Consensus 64 ~~~~iD~V~Iatp~~~H~e~~~~AL~aGk 92 (342)
T COG0673 64 ADPDIDAVYIATPNALHAELALAALEAGK 92 (342)
T ss_pred cCCCCCEEEEcCCChhhHHHHHHHHhcCC
Confidence 12458999999999999999999999997
No 68
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.45 E-value=8.2e-05 Score=56.79 Aligned_cols=82 Identities=26% Similarity=0.315 Sum_probs=49.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
.+||+|+|+|++|..|.++|.+.. +++..++++...+. + ... .. +.+ ..+ .+++++ ...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa--~------~a~---~~-~~~--~~~---~~~~~~---~~~ 68 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASA--E------RAA---AF-IGA--GAI---LDLEEI---LRD 68 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HH--H------HHH---C---TT----------TTGG---GCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCcccc--c------ccc---cc-ccc--ccc---cccccc---ccc
Confidence 379999999999999999999874 78988887642211 0 000 00 112 122 223333 367
Q ss_pred CcEEEEecCCccCHHHHHHHHHC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKG 105 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~ 105 (254)
+|++|.|+|-..-.+.++.+.+.
T Consensus 69 aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 69 ADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -SEEEE-S-CCHHHHHHHHHHCC
T ss_pred CCEEEEEechHHHHHHHHHHHHh
Confidence 99999999998777777776665
No 69
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.29 E-value=0.0015 Score=58.91 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=72.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee--cCCCCCCCccc
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG--VRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~--~~~~~~~~~~~ 80 (254)
|+||.|+|+|.+|+.+++.|+++.+.++..+ .++.+. ..+ +..+.+ + .++..+ ..+.+.+.-.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iA-dRs~~~-~~~-----i~~~~~------~-~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIA-DRSKEK-CAR-----IAELIG------G-KVEALQVDAADVDALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEE-eCCHHH-HHH-----HHhhcc------c-cceeEEecccChHHHHHHH
Confidence 3699999999999999999999987776443 222111 001 110100 0 111111 12222221113
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCCCCCCCeEEeeeCcccccCCCCeEEcCChh
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNASCT 144 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~~~~~~~~v~~vn~~~i~~~~~iVa~p~C~ 144 (254)
.+.|+||.|.|.......++.+++.|+..+++|...+. . ..++ +..+ ++.+.+.++|-
T Consensus 67 ~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~---~-~~~~-~~a~-~Agit~v~~~G 124 (389)
T COG1748 67 KDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP---P-WKLD-EEAK-KAGITAVLGCG 124 (389)
T ss_pred hcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch---h-hhhh-HHHH-HcCeEEEcccC
Confidence 56799999999999999999999999965555544322 1 1222 3333 36777777776
No 70
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0011 Score=58.53 Aligned_cols=95 Identities=24% Similarity=0.385 Sum_probs=58.2
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCC---------CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecC
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVR 71 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p---------~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~ 71 (254)
|+++||+|+|+|.+|+.++++|.++. +++++.+..++ +.+. + + + ......... .
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~-----~~~~----~---~--~--~~~~~~~~~-~ 63 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRD-----GSLV----R---D--L--DLLNAEVWT-T 63 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEecc-----chhc----c---c--c--cccchhhhe-e
Confidence 78899999999999999999998863 35555655442 1110 0 0 0 000000000 1
Q ss_pred CC-----CCCCcccCCCcEEEEecCCc--cCH--HHHHHHHHCCCCeEEecCC
Q 025368 72 NP-----EEIPWAETGAEYVVESTGVF--TDK--DKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 72 ~~-----~~~~~~~~~~Dvv~~a~~~~--~s~--~~~~~~~~~G~~~~viS~~ 115 (254)
+. .++.+ ..+.|+|+++++.. .+. ++..+++++|. .|+++.
T Consensus 64 ~~~~~~~~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN 113 (333)
T COG0460 64 DGALSLGDEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN 113 (333)
T ss_pred cccccccHhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence 11 22222 25689999999983 344 67889999997 777665
No 71
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.20 E-value=0.00067 Score=60.52 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=55.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC---------CceeEEeeeeeeccccccccccceeecCCee----EEECCEE--EEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVATYMFKYDSVHGQWKHHELKVKDDKT----LLFGEKP--VTV 67 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p---------~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~----l~~~~~~--~~~ 67 (254)
+++|+|+|+|.+|+.++++|.++. ++.++++..+.. + . ..+.|-. +...... +.-
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~-~---~------~~~~gi~~~~~l~~~~~~~~~~~ 71 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNV-A---I------HNEDGLSIHHLLRYGGGSCAIEK 71 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecch-h---h------ccccCCChhhhhhccccccchhh
Confidence 589999999999999999987542 355666643220 0 0 0011100 0000000 000
Q ss_pred eecCCCCCCCcccCCCcEEEEecCCc-----cCHHHHHHHHHCCCCeEEecCC
Q 025368 68 FGVRNPEEIPWAETGAEYVVESTGVF-----TDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 68 ~~~~~~~~~~~~~~~~Dvv~~a~~~~-----~s~~~~~~~~~~G~~~~viS~~ 115 (254)
+...+++++.-...+.|+|++||+.. .+.++++.++++|+ -|+|+.
T Consensus 72 ~~~~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~--hVVTAN 122 (346)
T PRK06813 72 YIEHHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKM--DIVAIS 122 (346)
T ss_pred hhccChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCC--eEEcCC
Confidence 00011111100011579999998863 45678899999998 677655
No 72
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.20 E-value=0.001 Score=59.00 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=53.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcC-------CCceeEEeeeeeeccccccccccceeecCCeeE------EECCEEEEEeec
Q 025368 4 VKIGINGFGRIGRLVARVILQR-------DDVELVATYMFKYDSVHGQWKHHELKVKDDKTL------LFGEKPVTVFGV 70 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~-------p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l------~~~~~~~~~~~~ 70 (254)
|||+|+|+|.+|+.++++|.++ .+++++++..+. +.. ..+.|-.+ .-.+ .+..+..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~-----g~l-----~~~~Gldl~~l~~~~~~g-~l~~~~~ 69 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK-----LSY-----YNERGLDIGKIISYKEKG-RLEEIDY 69 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC-----Ccc-----cCCcCCChHHHHHHHhcC-ccccCCC
Confidence 3999999999999999999875 356777775432 100 00111000 0000 0100000
Q ss_pred C--CCCCCCcccCCCcEEEEecCCcc----CHHHHHHHHHCCCCeEEecC
Q 025368 71 R--NPEEIPWAETGAEYVVESTGVFT----DKDKAAAHLKGGAKKVIISA 114 (254)
Q Consensus 71 ~--~~~~~~~~~~~~Dvv~~a~~~~~----s~~~~~~~~~~G~~~~viS~ 114 (254)
. +.+++ + ..++|+|++|++... ...+.+.++++|+ -|+++
T Consensus 70 ~~~~~~~l-l-~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~--hVVTa 115 (326)
T PRK06392 70 EKIKFDEI-F-EIKPDVIVDVTPASKDGIREKNLYINAFEHGI--DVVTA 115 (326)
T ss_pred CcCCHHHH-h-cCCCCEEEECCCCCCcCchHHHHHHHHHHCCC--EEEcC
Confidence 0 11222 1 136899999997532 3566789999998 55533
No 73
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.03 E-value=0.00095 Score=48.29 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=59.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+.||.|+|+|..|++++........+++..+.... + ++ .|+. ++| ++++. +.+++.-.. +
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~--~--~~---------~G~~--i~g--ipV~~--~~~~l~~~~-~ 62 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD--P--EK---------IGKE--IGG--IPVYG--SMDELEEFI-E 62 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC--T--TT---------TTSE--ETT--EEEES--SHHHHHHHC-T
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC--C--Cc---------cCcE--ECC--EEeec--cHHHhhhhh-C
Confidence 46999999999999988656655578887765432 1 10 1212 233 56652 122221112 3
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
+|+.+.|.|.....+.+.+++++|+|.++.
T Consensus 63 i~iaii~VP~~~a~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 63 IDIAIITVPAEAAQEVADELVEAGIKGIVN 92 (96)
T ss_dssp TSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 899999999999999999999999987664
No 74
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.03 E-value=0.0012 Score=56.60 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|+.+||+|+|+|.+|..+++.|.+...+.-..++... . +.. .+ + .... .++.+. .
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~--~------------~~~-~~---~--~~~~--~~~~~~---~ 55 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHT--P------------SKK-NT---P--FVYL--QSNEEL---A 55 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEEC--C------------Chh-cC---C--eEEe--CChHHH---H
Confidence 7778999999999999999999877433221222211 1 000 11 1 1111 223222 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~ 104 (254)
.++|+||.|+++....+.++.+..
T Consensus 56 ~~~D~Vilavkp~~~~~vl~~i~~ 79 (260)
T PTZ00431 56 KTCDIIVLAVKPDLAGKVLLEIKP 79 (260)
T ss_pred HhCCEEEEEeCHHHHHHHHHHHHh
Confidence 478999999999887777766553
No 75
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.02 E-value=0.0009 Score=53.86 Aligned_cols=91 Identities=19% Similarity=0.331 Sum_probs=60.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHc-CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
|.+|.|+|+|.+|+.|+..-.. +.++.++.+..... +..|+.. ++ +.+....+.+.. -...
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~-~~VG~~~--------------~~--v~V~~~d~le~~-v~~~ 145 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP-DKVGTKI--------------GD--VPVYDLDDLEKF-VKKN 145 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH-HHhCccc--------------CC--eeeechHHHHHH-HHhc
Confidence 5799999999999999875443 45688888764431 1122211 12 444332233322 0113
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEE
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVI 111 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~v 111 (254)
++|+++.|.|...+.+.+..+.++|+|.++
T Consensus 146 dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 146 DVEIAILTVPAEHAQEVADRLVKAGVKGIL 175 (211)
T ss_pred CccEEEEEccHHHHHHHHHHHHHcCCceEE
Confidence 799999999999999999999999997544
No 76
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.02 E-value=0.00074 Score=60.18 Aligned_cols=100 Identities=26% Similarity=0.379 Sum_probs=55.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC---------CceeEEeeeeeeccccccccccceeecCCe-eEEECCEEEEEee---
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD---------DVELVATYMFKYDSVHGQWKHHELKVKDDK-TLLFGEKPVTVFG--- 69 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p---------~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~-~l~~~~~~~~~~~--- 69 (254)
++||+|+|+|.+|+.++++|.++. +++++++.... ...+.. ..+..+.-. ...-.+ .+.-+.
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~-~~~~~~---~Gid~~~l~~~~~~~~-~~~~~~~~~ 76 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS-GTIWLP---EDIDLREAKEVKENFG-KLSNWGNDY 76 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC-ccccCC---CCCChHHHHHhhhccC-chhhccccc
Confidence 589999999999999999987732 36677765321 000000 000000000 000000 000010
Q ss_pred ---cCCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCC
Q 025368 70 ---VRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 70 ---~~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
..+++++ +...++|+|++|++.....++..++++.|+.
T Consensus 77 ~~~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~ 117 (336)
T PRK08374 77 EVYNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKS 117 (336)
T ss_pred cccCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCc
Confidence 0122222 1114689999999988888899999999984
No 77
>PRK10206 putative oxidoreductase; Provisional
Probab=96.96 E-value=0.001 Score=59.49 Aligned_cols=91 Identities=14% Similarity=0.246 Sum_probs=57.6
Q ss_pred CcEEEEEccCHHHH-HHHHHHHc-CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGFGRIGR-LVARVILQ-RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~G~~G~-~l~~~L~~-~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|+||||+|+|.+++ ..++.+.. .+++++++++...... .++. . . +++ +.++ .|.+++ +..
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~--~~~~-------~--~--~~~--~~~~--~~~~el-l~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKP--EEQA-------P--I--YSH--IHFT--SDLDEV-LND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhH--HHHH-------H--h--cCC--Cccc--CCHHHH-hcC
Confidence 47999999998775 34566644 4679999987653110 0100 0 0 111 2222 233333 112
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
.++|+|+-|+|+....+++.+++++|+. +++
T Consensus 63 ~~iD~V~I~tp~~~H~~~~~~al~aGkh-Vl~ 93 (344)
T PRK10206 63 PDVKLVVVCTHADSHFEYAKRALEAGKN-VLV 93 (344)
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHcCCc-EEE
Confidence 4689999999999999999999999963 444
No 78
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.91 E-value=0.00097 Score=53.50 Aligned_cols=90 Identities=27% Similarity=0.370 Sum_probs=54.6
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee--cCCCCCCCcccCC
Q 025368 6 IGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG--VRNPEEIPWAETG 82 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 82 (254)
|.|+|+ |++|+.+++.|.+++ .++..+.-.. .+.. . .. + +.++. ..|++.+.-...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~-----~~~~----~-~~-------~--~~~~~~d~~d~~~~~~al~~ 60 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSP-----SKAE----D-SP-------G--VEIIQGDLFDPDSVKAALKG 60 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG-----GGHH----H-CT-------T--EEEEESCTTCHHHHHHHHTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCc-----hhcc----c-cc-------c--cccceeeehhhhhhhhhhhh
Confidence 689999 999999999999997 7877764221 1110 0 11 1 22222 1233222112358
Q ss_pred CcEEEEecCCccC-----HHHHHHHHHCCCCeEEe-cCC
Q 025368 83 AEYVVESTGVFTD-----KDKAAAHLKGGAKKVII-SAP 115 (254)
Q Consensus 83 ~Dvv~~a~~~~~s-----~~~~~~~~~~G~~~~vi-S~~ 115 (254)
+|.||.+.++... +...+.+.++|++++++ |+.
T Consensus 61 ~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 61 ADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp SSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred cchhhhhhhhhcccccccccccccccccccccceeeecc
Confidence 9999999986433 33345566789887776 443
No 79
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.88 E-value=0.0031 Score=55.46 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=53.3
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee--cCCCCCCCcccC
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG--VRNPEEIPWAET 81 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~--~~~~~~~~~~~~ 81 (254)
||.|.|+ |++|+.|++.|.++. .++..+. +.... . ... . .. + +.++. ..|++.+.-...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~-R~~~~-~-~~l----~-~~-------~--v~~v~~Dl~d~~~l~~al~ 63 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLV-RNLRK-A-SFL----K-EW-------G--AELVYGDLSLPETLPPSFK 63 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEE-cChHH-h-hhH----h-hc-------C--CEEEECCCCCHHHHHHHHC
Confidence 8999999 999999999999885 6766653 21000 0 000 0 01 1 11211 123332211236
Q ss_pred CCcEEEEecCCccC-------------HHHHHHHHHCCCCeEEe-cC
Q 025368 82 GAEYVVESTGVFTD-------------KDKAAAHLKGGAKKVII-SA 114 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s-------------~~~~~~~~~~G~~~~vi-S~ 114 (254)
++|+||.+.+.... ...++.+.++|++++|. |.
T Consensus 64 g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 64 GVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 89999998764321 33456677789987775 55
No 80
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.85 E-value=0.00038 Score=58.36 Aligned_cols=96 Identities=23% Similarity=0.182 Sum_probs=56.8
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCCc
Q 025368 6 IGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAE 84 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~D 84 (254)
|.|+|+ |.+|+.+++.|.. +.+++..++-....+...++ . ..| ..+-.....|++.+.-.+.++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l-----~-~~g-------~~vv~~d~~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQL-----Q-ALG-------AEVVEADYDDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHH-----H-HTT-------TEEEES-TT-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhh-----h-ccc-------ceEeecccCCHHHHHHHHcCCc
Confidence 789999 9999999999998 56888776532100000111 0 122 1111111123334332347999
Q ss_pred EEEEecCCc------cCHHHHHHHHHCCCCeEEecCC
Q 025368 85 YVVESTGVF------TDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 85 vv~~a~~~~------~s~~~~~~~~~~G~~~~viS~~ 115 (254)
.||.+++.. .....+.++.++|+|++|.|.+
T Consensus 67 ~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 67 AVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp EEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred eEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 999999943 3344567788899998877544
No 81
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.82 E-value=0.0071 Score=48.79 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=26.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
|||||+|+ |.+|.+++.-...+. -+++++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAiv 31 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIV 31 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC-CeeEEEE
Confidence 49999999 999999999988884 7888875
No 82
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.81 E-value=0.0012 Score=66.54 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCce------------eEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVE------------LVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV 70 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~------------v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~ 70 (254)
|.||+|+|+|++|+..++.|.++|+++ ++.+.....+. .+.. ..+ +. +-..+.+ ..
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~--a~~l------a~~--~~-~~~~v~l-Dv 636 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD--AKET------VEG--IE-NAEAVQL-DV 636 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH--HHHH------HHh--cC-CCceEEe-ec
Confidence 579999999999999999999998876 34443321100 0000 000 00 0011121 00
Q ss_pred CCCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 71 RNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 71 ~~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
.|.+++.-...++|+|+.|+|.....+.+..++++|+..++.|
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 2333331112579999999999999999999999998533334
No 83
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.81 E-value=0.0012 Score=55.81 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=47.1
Q ss_pred CC-CcEEEEEccCHHHHHHHHHHHcCC--CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCC
Q 025368 1 MG-KVKIGINGFGRIGRLVARVILQRD--DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIP 77 (254)
Q Consensus 1 M~-~~~V~IvG~G~~G~~l~~~L~~~p--~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~ 77 (254)
|| ++||+|+|+|.+|..+++.|.++. +++...++.+. +. .+.. ... . . + + +... .+.+++
T Consensus 1 ~m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~-~~--~~~~--~~~-~---~--~-~--~~~~--~~~~~~- 63 (245)
T PRK07634 1 MLKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS-NV--EKLD--QLQ-A---R--Y-N--VSTT--TDWKQH- 63 (245)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC-CH--HHHH--HHH-H---H--c-C--cEEe--CChHHH-
Confidence 44 689999999999999999887764 23312222211 00 0000 000 0 0 1 1 2222 223222
Q ss_pred cccCCCcEEEEecCCccCHHHHHHHH
Q 025368 78 WAETGAEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 78 ~~~~~~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
.+++|+||.|+|+....+.++.+.
T Consensus 64 --~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 64 --VTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred --HhcCCEEEEecCHHHHHHHHHHHH
Confidence 357999999999987776666544
No 84
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.76 E-value=0.00087 Score=48.12 Aligned_cols=88 Identities=23% Similarity=0.246 Sum_probs=48.7
Q ss_pred EEEEEccCHHHHHHHHHHHcCC--CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 5 KIGINGFGRIGRLVARVILQRD--DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p--~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
||||+|+|.+|..|++.|.++. ..++..++.+..+. ..++ ...- + ..++. .+..++ .+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~-~~~~-----~~~~-------~--~~~~~-~~~~~~---~~~ 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEK-AAEL-----AKEY-------G--VQATA-DDNEEA---AQE 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHH-HHHH-----HHHC-------T--TEEES-EEHHHH---HHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHH-HHHH-----HHhh-------c--ccccc-CChHHh---hcc
Confidence 7999999999999999999884 13444333332111 0000 0000 1 11111 011222 246
Q ss_pred CcEEEEecCCccCHHHHHHH--HHCCCCeEEec
Q 025368 83 AEYVVESTGVFTDKDKAAAH--LKGGAKKVIIS 113 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~--~~~G~~~~viS 113 (254)
+|+||.|.++....+.++.+ ...+. .+||
T Consensus 62 advvilav~p~~~~~v~~~i~~~~~~~--~vis 92 (96)
T PF03807_consen 62 ADVVILAVKPQQLPEVLSEIPHLLKGK--LVIS 92 (96)
T ss_dssp TSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEE
T ss_pred CCEEEEEECHHHHHHHHHHHhhccCCC--EEEE
Confidence 89999999998877777665 44554 5553
No 85
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.74 E-value=0.0046 Score=51.41 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=57.7
Q ss_pred CcEEEEEccCHHHHHHHHHHH-cCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~-~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
..||+|+|+|.+|+.+++.+. ..++++++++.....+ . .+.. ..+ ..+....+.+++ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~-~------------~~~~--i~g--~~v~~~~~l~~l-i~~~ 145 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE-K------------IGTK--IGG--IPVYHIDELEEV-VKEN 145 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh-h------------cCCE--eCC--eEEcCHHHHHHH-HHHC
Confidence 469999999999999998643 3446888887653211 0 0101 122 222211122222 0113
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
++|+|+.|+|.....+....+.++|++.++.
T Consensus 146 ~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~ 176 (213)
T PRK05472 146 DIEIGILTVPAEAAQEVADRLVEAGIKGILN 176 (213)
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence 6999999999988888888899999865443
No 86
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.63 E-value=0.0026 Score=54.57 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=46.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCC-ceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDD-VELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~-~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
|+||+|+|+|.+|..+++.|.+... ...+.++.+..+ +. ..+. . .+ + +.+. .+.+++ ..
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~----~~--~~~~--~--~~---g--~~~~--~~~~~~---~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPE----KR--AALA--E--EY---G--VRAA--TDNQEA---AQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHH----HH--HHHH--H--hc---C--Ceec--CChHHH---Hh
Confidence 4799999999999999999886631 112233322111 00 0000 0 00 1 1221 222222 25
Q ss_pred CCcEEEEecCCccCHHHHHHHHH
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~ 104 (254)
++|+||.|+++....+.++.+..
T Consensus 62 ~advVil~v~~~~~~~v~~~l~~ 84 (267)
T PRK11880 62 EADVVVLAVKPQVMEEVLSELKG 84 (267)
T ss_pred cCCEEEEEcCHHHHHHHHHHHHh
Confidence 78999999999877777766554
No 87
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=96.40 E-value=0.018 Score=49.38 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=31.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFK 37 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~ 37 (254)
.++|-+.|.|++|.+.+|.|.++|.++++++...+
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s 36 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHS 36 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecC
Confidence 37999999999999999999999999999977654
No 88
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.28 E-value=0.0042 Score=56.29 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=51.2
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCCcE
Q 025368 6 IGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEY 85 (254)
Q Consensus 6 V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~Dv 85 (254)
|.|+|+|++|+.+++.|.+++.++-..+..+..+. ..+.. ..+ .+..+ ........|.+++.-...++|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~-~~~~~-~~~---~~~~~-----~~~~~d~~~~~~l~~~~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEK-AERLA-EKL---LGDRV-----EAVQVDVNDPESLAELLRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHH-HHHHH-T-----TTTTE-----EEEE--TTTHHHHHHHHTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHH-HHHHH-hhc---cccce-----eEEEEecCCHHHHHHHHhcCCE
Confidence 68999999999999999999877322333322110 00000 000 11011 1111111233222211468899
Q ss_pred EEEecCCccCHHHHHHHHHCCCCeE
Q 025368 86 VVESTGVFTDKDKAAAHLKGGAKKV 110 (254)
Q Consensus 86 v~~a~~~~~s~~~~~~~~~~G~~~~ 110 (254)
|+.|+|+......++.+++.|+.-+
T Consensus 71 Vin~~gp~~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 71 VINCAGPFFGEPVARACIEAGVHYV 95 (386)
T ss_dssp EEE-SSGGGHHHHHHHHHHHT-EEE
T ss_pred EEECCccchhHHHHHHHHHhCCCee
Confidence 9999999988889999999998433
No 89
>PLN02700 homoserine dehydrogenase family protein
Probab=96.26 E-value=0.0046 Score=55.70 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=26.0
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEecCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~ 115 (254)
.++++|||+.....++.+.++++|+ -|+++.
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~--hVVTaN 140 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGC--CIVLAN 140 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCC--eEEcCC
Confidence 5999999998777789999999998 667554
No 90
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.15 E-value=0.013 Score=50.56 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=51.7
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc---
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE--- 80 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~--- 80 (254)
+|.|.|+ |++|+.+++.|.+.. .++..+. +..++. . ..+ . ..+. ....|++.+.-..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~-R~~~~~---------~-~~~--~----~~~~-~d~~d~~~l~~a~~~~ 61 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVAS-RSSSSS---------A-GPN--E----KHVK-FDWLDEDTWDNPFSSD 61 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEe-CCCccc---------c-CCC--C----cccc-ccCCCHHHHHHHHhcc
Confidence 5889999 999999999998774 6665443 221110 0 011 0 0000 1112333221111
Q ss_pred ---CC-CcEEEEecCCcc-----CHHHHHHHHHCCCCeEEe-cC
Q 025368 81 ---TG-AEYVVESTGVFT-----DKDKAAAHLKGGAKKVII-SA 114 (254)
Q Consensus 81 ---~~-~Dvv~~a~~~~~-----s~~~~~~~~~~G~~~~vi-S~ 114 (254)
.+ +|.||.+++... ....++.+.++|++++|. |.
T Consensus 62 ~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 62 DGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred cCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 45 899999988532 234556677899988775 53
No 91
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.11 E-value=0.0096 Score=51.49 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|+ +||+++|+|.+|..+++.|.+...+....++... ....+.. ... . . + | +... .+..++ .
T Consensus 1 ~~-~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~--r~~~~~~--~l~-~---~--~-g--~~~~--~~~~e~---~ 61 (272)
T PRK12491 1 MN-KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD--LNVSNLK--NAS-D---K--Y-G--ITIT--TNNNEV---A 61 (272)
T ss_pred CC-CeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC--CCHHHHH--HHH-H---h--c-C--cEEe--CCcHHH---H
Confidence 55 5999999999999999999876432222222221 1101100 000 0 0 1 1 1221 223233 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
.++|+||.|.++....+.++.+.
T Consensus 62 ~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 62 NSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred hhCCEEEEEeChHHHHHHHHHHH
Confidence 57899999999976666665543
No 92
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.08 E-value=0.0066 Score=52.58 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCC---ceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCC
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDD---VELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIP 77 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~---~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~ 77 (254)
|+.+||+++|+|.+|..+++.|.++.. .++ .++.+.... +. ..+. .. + + +... .++.+.
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r~~~~---~~--~~l~-~~-----~-g--~~~~--~~~~e~- 62 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNRSNET---RL--QELH-QK-----Y-G--VKGT--HNKKEL- 62 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECCCCHH---HH--HHHH-Hh-----c-C--ceEe--CCHHHH-
Confidence 777899999999999999999987741 222 222221000 00 0000 00 0 1 1221 222222
Q ss_pred cccCCCcEEEEecCCccCHHHHHHHH
Q 025368 78 WAETGAEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 78 ~~~~~~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
..++|+||.|.++....+.+..+.
T Consensus 63 --~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 63 --LTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred --HhcCCEEEEEeCHHHHHHHHHHHH
Confidence 257899999999987777666554
No 93
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.92 E-value=0.018 Score=51.94 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=57.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC-CceeEEeeeeeec----cccccccccceeecCC---eeEE--ECCEEEEEeec-C
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD-DVELVATYMFKYD----SVHGQWKHHELKVKDD---KTLL--FGEKPVTVFGV-R 71 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p-~~~v~~~~~~~~~----s~~g~~~~~~v~~~~g---~~l~--~~~~~~~~~~~-~ 71 (254)
+||+|+|+ |.+|.+-++.+.++| .|+++++.....- ....+|.-..+..... ..+. +.+..+.++.. .
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~ 81 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE 81 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence 69999999 999999999999987 5899888632210 0000000000000000 0000 00101223221 1
Q ss_pred CCCCCCcccCCCcEEEEecCCccCHHHHHHHHHCCCC
Q 025368 72 NPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 72 ~~~~~~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
...++- ...++|+|+.|.+.....+..-.++++|.+
T Consensus 82 ~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~ 117 (385)
T PRK05447 82 GLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAGKR 117 (385)
T ss_pred HHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCCCc
Confidence 111221 124689999999988777777788899963
No 94
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.90 E-value=0.012 Score=48.47 Aligned_cols=90 Identities=22% Similarity=0.183 Sum_probs=53.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
|++++|+|+|.+|..|.+.+..-. .|+....++..++.. .... .+ +..+... ...+. .+.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r~~~~~~--------a~a~--~l---~~~i~~~--~~~dA----~~~ 60 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSRGPKALA--------AAAA--AL---GPLITGG--SNEDA----AAL 60 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC-CeEEEecCCChhHHH--------HHHH--hh---ccccccC--ChHHH----Hhc
Confidence 369999999999999999998763 676554433211100 0000 11 1111111 11122 356
Q ss_pred CcEEEEecCCccCHHHHHHHHH--CCCCeEEecC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLK--GGAKKVIISA 114 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~--~G~~~~viS~ 114 (254)
+|+||++.|-.......+.+.+ .|. +||+.
T Consensus 61 aDVVvLAVP~~a~~~v~~~l~~~~~~K--IvID~ 92 (211)
T COG2085 61 ADVVVLAVPFEAIPDVLAELRDALGGK--IVIDA 92 (211)
T ss_pred CCEEEEeccHHHHHhHHHHHHHHhCCe--EEEec
Confidence 9999999998877777776664 344 77733
No 95
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.86 E-value=0.037 Score=49.12 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=24.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+||+|+|+|.+|..+...|.++. .++..
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~ 30 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAG-ADVTL 30 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcC-CcEEE
Confidence 469999999999999999998874 45544
No 96
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.68 E-value=0.014 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCC
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
+..||+|+|+|.+|..+.+.|.+..
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g 29 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLG 29 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcC
Confidence 3469999999999999999998764
No 97
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.66 E-value=0.022 Score=49.45 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCC--CCCCCcc
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN--PEEIPWA 79 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~--~~~~~~~ 79 (254)
++++|+|+|.|.+|+.+.|.|.+.. ..+ .++... ...+.. .... .+ |-..... .+ .+.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g-~~v-~i~g~d--~~~~~~-----~~a~--~l---gv~d~~~--~~~~~~~---- 61 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG-LVV-RIIGRD--RSAATL-----KAAL--EL---GVIDELT--VAGLAEA---- 61 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC-CeE-EEEeec--CcHHHH-----HHHh--hc---Ccccccc--cchhhhh----
Confidence 4679999999999999999998764 222 222221 100110 0000 11 1001110 11 112
Q ss_pred cCCCcEEEEecCCccCHHHHHHHH---HCCC
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHL---KGGA 107 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~---~~G~ 107 (254)
...+|+||.|+|-..+.+.++++. +.|+
T Consensus 62 ~~~aD~VivavPi~~~~~~l~~l~~~l~~g~ 92 (279)
T COG0287 62 AAEADLVIVAVPIEATEEVLKELAPHLKKGA 92 (279)
T ss_pred cccCCEEEEeccHHHHHHHHHHhcccCCCCC
Confidence 246899999999998888887655 4666
No 98
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.62 E-value=0.053 Score=40.59 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=51.8
Q ss_pred cEEEEEcc----CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 4 VKIGINGF----GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 4 ~~V~IvG~----G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
.+|+|+|+ +..|..+++.|.++. +++..+.... + . +.| .+.+. +.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~~-----------------~-~--i~G--~~~y~--sl~e~--- 52 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPKG-----------------G-E--ILG--IKCYP--SLAEI--- 52 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTTC-----------------S-E--ETT--EE-BS--SGGGC---
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCCc-----------------e-E--ECc--EEeec--cccCC---
Confidence 37999994 778999999999863 6665553210 0 1 123 33442 22222
Q ss_pred cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
-..+|+++.++|+....+.++++.+.|++.+++
T Consensus 53 p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 53 PEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp SST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE
T ss_pred CCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence 157899999999999999999999999998887
No 99
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.60 E-value=0.0071 Score=52.40 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=45.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCC---ceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 4 VKIGINGFGRIGRLVARVILQRDD---VELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~---~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
+||+|+|+|.+|..+++.|.+... .++... .++... +. .... . . +.+ ..+. .+..+. .
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~---~~--~~l~--~--~--~~~--~~~~--~~~~e~---~ 62 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILY-SSSKNE---HF--NQLY--D--K--YPT--VELA--DNEAEI---F 62 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHH---HH--HHHH--H--H--cCC--eEEe--CCHHHH---H
Confidence 599999999999999999887642 233322 211000 00 0000 0 0 001 1221 122222 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
.++|+||.|+|+....+.++.+.
T Consensus 63 ~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 63 TKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred hhCCEEEEecCHHHHHHHHHHHH
Confidence 57899999999987777766553
No 100
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.57 E-value=0.024 Score=50.15 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=57.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeec------cccccccccceeec-CCe---eEEECCEEEEEeecCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYD------SVHGQWKHHELKVK-DDK---TLLFGEKPVTVFGVRN 72 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~------s~~g~~~~~~v~~~-~g~---~l~~~~~~~~~~~~~~ 72 (254)
.+|||++|+|.+|.-++.....-|.++++++.-+.-+ +.+|......+..+ .++ .+. .| .+.+. .|
T Consensus 17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~-aG-Ki~vT--~D 92 (438)
T COG4091 17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIE-AG-KIAVT--DD 92 (438)
T ss_pred ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHh-cC-cEEEe--cc
Confidence 4899999999999999999998899999997654321 00111110000000 000 000 11 12332 33
Q ss_pred CCCCCcccCCCcEEEEecCC-ccCHHHHHHHHHCCC
Q 025368 73 PEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGA 107 (254)
Q Consensus 73 ~~~~~~~~~~~Dvv~~a~~~-~~s~~~~~~~~~~G~ 107 (254)
.+.+ +..+.+|+|+++|++ .+..+..-.++.+|.
T Consensus 93 ~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~K 127 (438)
T COG4091 93 AELI-IANDLIDVIIDATGVPEVGAKIALEAILHGK 127 (438)
T ss_pred hhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcCC
Confidence 3333 223678999999997 445556666677774
No 101
>PLN02256 arogenate dehydrogenase
Probab=95.53 E-value=0.02 Score=50.32 Aligned_cols=79 Identities=24% Similarity=0.475 Sum_probs=46.6
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|.++||+|+|+|.+|+.+.+.|.+.. .++..+. .. .. . .... . + | +..+ .+.+++. .
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d-~~--~~--~----~~a~----~--~-g--v~~~--~~~~e~~--~ 90 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATS-RS--DY--S----DIAA----E--L-G--VSFF--RDPDDFC--E 90 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEE-Cc--cH--H----HHHH----H--c-C--Ceee--CCHHHHh--h
Confidence 34579999999999999999998764 5554322 11 00 0 0000 0 0 1 1111 2222220 1
Q ss_pred CCCcEEEEecCCccCHHHHHHH
Q 025368 81 TGAEYVVESTGVFTDKDKAAAH 102 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~ 102 (254)
.++|+||.|+|.....+.++.+
T Consensus 91 ~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 91 EHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEecCHHHHHHHHHhh
Confidence 3589999999998777766665
No 102
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.51 E-value=0.086 Score=46.39 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+++||+|+|+|.+|..+...|.+.. .++..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~ 33 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-FDVHF 33 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-CeEEE
Confidence 45689999999999999999998763 45543
No 103
>PRK08818 prephenate dehydrogenase; Provisional
Probab=95.44 E-value=0.03 Score=50.52 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=46.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
+.||+|+|. |.+|+.+.+.|.+....++.+. |.. +.+ ..++++. ..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-----D~~-----------d~~--------------~~~~~~~---v~ 50 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-----DPA-----------DPG--------------SLDPATL---LQ 50 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-----cCC-----------ccc--------------cCCHHHH---hc
Confidence 579999999 9999999999986534454321 210 000 0112221 25
Q ss_pred CCcEEEEecCCccCHHHHHHHHH
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~ 104 (254)
++|+||.|+|.....+.++++..
T Consensus 51 ~aDlVilavPv~~~~~~l~~l~~ 73 (370)
T PRK08818 51 RADVLIFSAPIRHTAALIEEYVA 73 (370)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhh
Confidence 79999999999988888877653
No 104
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.43 E-value=0.042 Score=48.18 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=23.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+||+|+|+|++|..++..+..+.-.++.-
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L 31 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVL 31 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 469999999999999999988764224433
No 105
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.25 E-value=0.027 Score=50.34 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC-CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD-DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p-~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
.+||||+|+ .+|+.-++.+.+.| +++++++.....+. .+. .. . . + | +..+ .+.+++ ..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er--A~~----~A--~--~--~-g--i~~y--~~~eel---l~ 61 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER--SRA----LA--H--R--L-G--VPLY--CEVEEL---PD 61 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH--HHH----HH--H--H--h-C--CCcc--CCHHHH---hc
Confidence 579999999 56999999999888 89999998754211 110 00 0 1 1 1 2222 234444 23
Q ss_pred CCcEEEEec----CCccCHHHHHHHHHCCC
Q 025368 82 GAEYVVEST----GVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 82 ~~Dvv~~a~----~~~~s~~~~~~~~~~G~ 107 (254)
+.|+++-++ |++.-.+.+.+++++|+
T Consensus 62 d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk 91 (343)
T TIGR01761 62 DIDIACVVVRSAIVGGQGSALARALLARGI 91 (343)
T ss_pred CCCEEEEEeCCCCCCccHHHHHHHHHhCCC
Confidence 345444443 56777899999999997
No 106
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.21 E-value=0.074 Score=49.31 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=59.4
Q ss_pred CcEEEEEcc----CHHHHHHHHHHHcCCCc--eeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCC
Q 025368 3 KVKIGINGF----GRIGRLVARVILQRDDV--ELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEI 76 (254)
Q Consensus 3 ~~~V~IvG~----G~~G~~l~~~L~~~p~~--~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~ 76 (254)
..+|+|+|+ |..|..+++.|.++. | ++..+.-. ++ . +.| ++++ .+.+++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~g-f~g~v~~Vnp~-~~-----------------~--i~G--~~~~--~sl~~l 61 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGG-YKGKIYPVNPK-AG-----------------E--ILG--VKAY--PSVLEI 61 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCC-CCCcEEEECCC-CC-----------------c--cCC--cccc--CCHHHC
Confidence 468999999 668999999999875 4 33222110 00 1 112 3333 234455
Q ss_pred CcccCCCcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC
Q 025368 77 PWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP 115 (254)
Q Consensus 77 ~~~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~ 115 (254)
+ +.+|+++.|+|+....+.++++.++|++.+++ |++
T Consensus 62 p---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf 99 (447)
T TIGR02717 62 P---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVVITAGF 99 (447)
T ss_pred C---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 3 56899999999999999999999999988876 555
No 107
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.16 E-value=0.027 Score=48.72 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=45.1
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCCc
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAE 84 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~D 84 (254)
||+|+|.|.+|..+.+.|.++. +++... .+..+. ..+. . .. |. +.... .+.+. ..++|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~-d~~~~~-~~~a-----~-~~-------g~-~~~~~-~~~~~----~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGV-SRREST-CERA-----I-ER-------GL-VDEAS-TDLSL----LKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEE-ECCHHH-HHHH-----H-HC-------CC-ccccc-CCHhH----hcCCC
Confidence 8999999999999999998774 555433 221110 0000 0 01 10 11110 12222 25799
Q ss_pred EEEEecCCccCHHHHHHHHH
Q 025368 85 YVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 85 vv~~a~~~~~s~~~~~~~~~ 104 (254)
+||.|+|.....+..+.+..
T Consensus 60 lVilavp~~~~~~~~~~l~~ 79 (279)
T PRK07417 60 LVILALPIGLLLPPSEQLIP 79 (279)
T ss_pred EEEEcCCHHHHHHHHHHHHH
Confidence 99999998777666665543
No 108
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.13 E-value=0.17 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
|.||+|+|+ |.+|..+...|...+
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~ 32 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNP 32 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCC
Confidence 579999999 999999999888664
No 109
>PLN02688 pyrroline-5-carboxylate reductase
Probab=95.12 E-value=0.016 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=20.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
|||+++|+|.+|..+++.|.+..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g 23 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASG 23 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCC
Confidence 38999999999999999998764
No 110
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.08 E-value=0.089 Score=47.85 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=25.5
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++||.|.|+ |++|+.+++.|.++. .++..+
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l 90 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG-YNVVAV 90 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 469999999 999999999998874 676554
No 111
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.97 E-value=0.022 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
+||+|+|+|.+|..+...|.+.. .++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g-~~V 27 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG-HDV 27 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEE
Confidence 59999999999999999998763 554
No 112
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.87 E-value=0.13 Score=45.35 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=24.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCc-eeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDV-ELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~-~v~~~ 33 (254)
+||+|+|+ |++|..++..|...+.. ++..+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv 32 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI 32 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence 49999999 99999999999988643 44443
No 113
>PLN02602 lactate dehydrogenase
Probab=94.84 E-value=0.11 Score=46.52 Aligned_cols=25 Identities=32% Similarity=0.605 Sum_probs=21.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCc
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDV 28 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~ 28 (254)
.||+|+|+|.+|..++-.|...+-+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~ 62 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA 62 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC
Confidence 6999999999999999988877533
No 114
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.83 E-value=0.023 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEccCHHHHHHHHHHHcCC
Q 025368 5 KIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p 26 (254)
||+|+|+|.+|..+++.|.+..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g 23 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSP 23 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCC
Confidence 8999999999999999998764
No 115
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.56 E-value=0.19 Score=44.53 Aligned_cols=24 Identities=46% Similarity=0.706 Sum_probs=21.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
.+||+|+|+|.+|..+..++..+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999999888775
No 116
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=94.55 E-value=0.16 Score=44.29 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=59.3
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEE-eeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA-TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~-~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
+-||-|.|. |..|..+++.|.+.. ++..+ +.-.. | .. .+ .| ++.+ .+.++++
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~~v~pVnp~~-----~----------~~-~v--~G--~~~y--~sv~dlp--- 61 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TNIVGGVTPGK-----G----------GT-TV--LG--LPVF--NTVAEAV--- 61 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CCEEEEECCCC-----C----------CC-eE--eC--eecc--CCHHHHh---
Confidence 359999999 999999999998875 44222 21100 0 00 11 12 3444 2344443
Q ss_pred CC--CcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC
Q 025368 81 TG--AEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP 115 (254)
Q Consensus 81 ~~--~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~ 115 (254)
+. +|+++.+.|.....+.++++.++|+|.+|| +++
T Consensus 62 ~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf 100 (291)
T PRK05678 62 EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGI 100 (291)
T ss_pred hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 33 899999999999999999999999998776 555
No 117
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.54 E-value=0.097 Score=45.98 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=42.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
.+||+|+|+|.+|..+.+.|.+.. .++. ++.+. .. .++++. ..+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~-~~~r~----------------~~---------------~~~~~~---~~~ 47 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANG-HRVR-VWSRR----------------SG---------------LSLAAV---LAD 47 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCC-CEEE-EEeCC----------------CC---------------CCHHHH---Hhc
Confidence 469999999999999999998774 5553 22211 00 111121 246
Q ss_pred CcEEEEecCCccCHHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAH 102 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~ 102 (254)
+|+||.|+|.....+.++.+
T Consensus 48 advvi~~vp~~~~~~v~~~l 67 (308)
T PRK14619 48 ADVIVSAVSMKGVRPVAEQV 67 (308)
T ss_pred CCEEEEECChHHHHHHHHHH
Confidence 89999999987655555554
No 118
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.54 E-value=0.16 Score=45.76 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.3
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
.+||.|.|+ |++|+.|++.|.++. .++..+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG-HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC-CEEEEEE
Confidence 479999999 999999999999885 6776654
No 119
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.47 E-value=0.057 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=21.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCce
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVE 29 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~ 29 (254)
.||+|+|+|.+|..+...+..+.-.+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~ 32 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGD 32 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe
Confidence 48999999999999999887664335
No 120
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.42 E-value=0.041 Score=45.86 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.1
Q ss_pred cEEEEEc-cCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGING-FGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG-~G~~G~~l~~~L~~~p~~~v~ 31 (254)
|||+|+| +|.+|..+.+.|.+.. .++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~ 28 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKII 28 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEE
Confidence 3899998 5999999999998774 4553
No 121
>PRK07680 late competence protein ComER; Validated
Probab=94.38 E-value=0.016 Score=49.97 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=45.2
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCcee--EEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVEL--VATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v--~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
||+|+|+|.+|..+++.|.+...++. +.++.+..++ .. ... . . +.+ +... .+..+. ..+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~----~~--~~~--~--~--~~g--~~~~--~~~~~~---~~~ 62 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAK----AY--HIK--E--R--YPG--IHVA--KTIEEV---ISQ 62 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHH----HH--HHH--H--H--cCC--eEEE--CCHHHH---HHh
Confidence 89999999999999999887753322 2333332110 00 000 0 0 011 2222 222222 257
Q ss_pred CcEEEEecCCccCHHHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
+|+||.|+++....+.++.+.
T Consensus 63 aDiVilav~p~~~~~vl~~l~ 83 (273)
T PRK07680 63 SDLIFICVKPLDIYPLLQKLA 83 (273)
T ss_pred CCEEEEecCHHHHHHHHHHHH
Confidence 899999999877666665543
No 122
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.36 E-value=0.036 Score=55.03 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=54.1
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCC---------CceeEEeeeeeeccccccccccceeecCCeeEE-ECCEEEEEeec
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRD---------DVELVATYMFKYDSVHGQWKHHELKVKDDKTLL-FGEKPVTVFGV 70 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p---------~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~-~~~~~~~~~~~ 70 (254)
|++++|+|+|+|.+|+.++++|.++. +++++++..+. +... . ..|-.+. .....-.....
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~-----~~~~----~-~~gi~~~~~~~~~~~~~~~ 525 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSR-----RSLL----N-YDGLDASRALAFFDDEAVE 525 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCC-----cccc----C-ccCCCHHHHHhhHHhhcCC
Confidence 34689999999999999999987653 35556664321 0000 0 0010000 00000000000
Q ss_pred CCCCCC-Ccc---cCCCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC
Q 025368 71 RNPEEI-PWA---ETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 71 ~~~~~~-~~~---~~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~ 115 (254)
.+.+.+ +|. ....++|++|++......+...++++|+ -|+|+.
T Consensus 526 ~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~--~VVtaN 572 (810)
T PRK09466 526 WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGF--HVISAN 572 (810)
T ss_pred ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence 001000 010 0123699999998766666778999998 677554
No 123
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.31 E-value=0.08 Score=52.79 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=25.4
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEecCC
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~ 115 (254)
..|++++|++......+...++++|+ -|+|+.
T Consensus 547 ~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN 578 (819)
T PRK09436 547 LNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN 578 (819)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence 35899999998665666779999998 677555
No 124
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=94.28 E-value=0.19 Score=43.57 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEcc-CHHHHHHHHHHHcCCC
Q 025368 8 INGF-GRIGRLVARVILQRDD 27 (254)
Q Consensus 8 IvG~-G~~G~~l~~~L~~~p~ 27 (254)
|.|+ |++|+.|++.|+++.+
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~ 22 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY 22 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC
Confidence 7899 9999999999999875
No 125
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.22 E-value=0.16 Score=44.81 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDD 27 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~ 27 (254)
..||+|+|+|.+|..++-.|...+-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~ 27 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL 27 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC
Confidence 4699999999999999998887753
No 126
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=94.22 E-value=0.071 Score=47.05 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=45.8
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec--CCCCCCCcc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV--RNPEEIPWA 79 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~--~~~~~~~~~ 79 (254)
+++|-|-|+ ||+|..+++.|+.+. ..|.+. .+..... -+. ..+. .+...+..+.++.. .+++.++-.
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gt-VR~~~~~-k~~--~~L~-----~l~~a~~~l~l~~aDL~d~~sf~~a 75 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRG-YTVRGT-VRDPEDE-KKT--EHLR-----KLEGAKERLKLFKADLLDEGSFDKA 75 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCC-CEEEEE-EcCcchh-hhH--HHHH-----hcccCcccceEEeccccccchHHHH
Confidence 479999999 999999999999996 455443 2221110 000 0000 11111222444431 244555445
Q ss_pred cCCCcEEEEecCC
Q 025368 80 ETGAEYVVESTGV 92 (254)
Q Consensus 80 ~~~~Dvv~~a~~~ 92 (254)
+++||.||.++.+
T Consensus 76 i~gcdgVfH~Asp 88 (327)
T KOG1502|consen 76 IDGCDGVFHTASP 88 (327)
T ss_pred HhCCCEEEEeCcc
Confidence 6799999998765
No 127
>PRK06444 prephenate dehydrogenase; Provisional
Probab=94.16 E-value=0.11 Score=42.74 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.0
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcC
Q 025368 4 VKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
+||+|+|+ |.+|+.+.+.+.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~ 23 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN 23 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC
Confidence 39999999 99999999987544
No 128
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=94.08 E-value=0.27 Score=45.40 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=25.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+||.|.|+ |++|+.|++.|.++. .+|..+
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~l 150 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVI 150 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC-CEEEEE
Confidence 69999999 999999999999884 576654
No 129
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.05 E-value=0.18 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCc
Q 025368 5 KIGINGFGRIGRLVARVILQRDDV 28 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~ 28 (254)
||+|+|+|.+|..++-.|..++-+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~ 24 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF 24 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC
Confidence 799999999999999988877644
No 130
>PLN00016 RNA-binding protein; Provisional
Probab=94.04 E-value=0.13 Score=46.36 Aligned_cols=102 Identities=20% Similarity=0.098 Sum_probs=53.4
Q ss_pred CcEEEEE----cc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec--CCCCC
Q 025368 3 KVKIGIN----GF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV--RNPEE 75 (254)
Q Consensus 3 ~~~V~Iv----G~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~--~~~~~ 75 (254)
++||.|+ |+ |++|+.|++.|.+.. .++..+.-.. ... .+.. .. ....-..+.-.+ +..+.. .+.++
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~-~~~-~~~~-~~-~~~~~~~l~~~~--v~~v~~D~~d~~~ 124 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGK-EPS-QKMK-KE-PFSRFSELSSAG--VKTVWGDPADVKS 124 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCC-cch-hhhc-cC-chhhhhHhhhcC--ceEEEecHHHHHh
Confidence 4699999 99 999999999999874 6776654221 100 0000 00 000000000001 222211 11222
Q ss_pred CCcccCCCcEEEEecCCcc--CHHHHHHHHHCCCCeEEe
Q 025368 76 IPWAETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 76 ~~~~~~~~Dvv~~a~~~~~--s~~~~~~~~~~G~~~~vi 112 (254)
+ +...++|+||.+.+... ....++.+.+.|++++|.
T Consensus 125 ~-~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~ 162 (378)
T PLN00016 125 K-VAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLF 162 (378)
T ss_pred h-hccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2 11247899999876432 344566677789987775
No 131
>PRK08507 prephenate dehydrogenase; Validated
Probab=93.97 E-value=0.06 Score=46.44 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=43.8
Q ss_pred EEEEEccCHHHHHHHHHHHcCCC-ceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 5 KIGINGFGRIGRLVARVILQRDD-VELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~-~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
||+|+|.|.+|..+.+.|.+... .++.. +.+..+ .. .. .... |. .... .+++++ .++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~-~d~~~~----~~--~~-~~~~-------g~-~~~~--~~~~~~----~~a 59 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYG-YDHNEL----HL--KK-ALEL-------GL-VDEI--VSFEEL----KKC 59 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEE-EcCCHH----HH--HH-HHHC-------CC-Cccc--CCHHHH----hcC
Confidence 89999999999999999987642 23322 222100 00 00 0001 10 1011 122233 248
Q ss_pred cEEEEecCCccCHHHHHHHH
Q 025368 84 EYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~ 103 (254)
|+||.|+|.....+.++.+.
T Consensus 60 D~Vilavp~~~~~~~~~~l~ 79 (275)
T PRK08507 60 DVIFLAIPVDAIIEILPKLL 79 (275)
T ss_pred CEEEEeCcHHHHHHHHHHHh
Confidence 99999999987777776654
No 132
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.95 E-value=0.35 Score=42.69 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCc
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDV 28 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~ 28 (254)
.||+|+|+|.+|..++-.|...+-+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~ 31 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIA 31 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC
Confidence 6999999999999999999888644
No 133
>PLN00106 malate dehydrogenase
Probab=93.88 E-value=0.35 Score=42.91 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCc
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDV 28 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~ 28 (254)
..||+|+|+ |.+|..+...|..++.+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~ 44 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLV 44 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCC
Confidence 369999999 99999999999876544
No 134
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.86 E-value=0.036 Score=42.98 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCc
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDV 28 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~ 28 (254)
+||+|+|+ |.+|..++-.|...+-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~ 26 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA 26 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC
Confidence 49999999 99999999999988643
No 135
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.76 E-value=0.11 Score=46.15 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
..+|||+|+|.+|..+++.|.+.. +++.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG-~~Vv 44 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSG-VDVV 44 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCC-CEEE
Confidence 368999999999999999998774 6654
No 136
>PLN02214 cinnamoyl-CoA reductase
Probab=93.73 E-value=0.21 Score=44.48 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=25.1
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++|.|.|+ |++|+.|++.|.++. .++..+
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~ 40 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGT 40 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEE
Confidence 468999999 999999999999884 566554
No 137
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.62 E-value=0.12 Score=45.60 Aligned_cols=28 Identities=32% Similarity=0.429 Sum_probs=24.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++.+.|... ++++.+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af-G~~V~~ 164 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW-GFPLRC 164 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE
Confidence 6999999999999999999976 477654
No 138
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.60 E-value=0.11 Score=40.99 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=48.3
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccc-----cccccccceeecCCeeEEECCEEEEEeecCCCCCCCcc
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSV-----HGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 79 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~-----~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 79 (254)
||+|+|+|..|..+...|..+. .++ .++.+..+.. .+... ..-++..+. . .+.+. .|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V-~l~~~~~~~~~~i~~~~~n~----~~~~~~~l~--~-~i~~t--~dl~~a--- 66 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEV-TLWGRDEEQIEEINETRQNP----KYLPGIKLP--E-NIKAT--TDLEEA--- 66 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEE-EEETSCHHHHHHHHHHTSET----TTSTTSBEE--T-TEEEE--SSHHHH---
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEE-EEEeccHHHHHHHHHhCCCC----CCCCCcccC--c-ccccc--cCHHHH---
Confidence 7999999999999999999886 443 3333221100 00000 001121221 1 23332 344332
Q ss_pred cCCCcEEEEecCCccCHHHHHHHHH---CCC
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAHLK---GGA 107 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~~~---~G~ 107 (254)
.+++|+++.|+|+...++.++.+.. .+.
T Consensus 67 ~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~ 97 (157)
T PF01210_consen 67 LEDADIIIIAVPSQAHREVLEQLAPYLKKGQ 97 (157)
T ss_dssp HTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-
T ss_pred hCcccEEEecccHHHHHHHHHHHhhccCCCC
Confidence 4689999999999888777766543 554
No 139
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.55 E-value=0.14 Score=46.25 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=46.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
++||+|+|. |.+|+.+.+.|.++. +++... .+ + . . .++++. ..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~-d~--~--------------~---~------------~~~~~~---~~ 141 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL-EQ--D--------------D---W------------DRAEDI---LA 141 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC-CeEEEe-CC--C--------------c---c------------hhHHHH---Hh
Confidence 369999995 999999999998864 443221 11 0 0 0 011111 25
Q ss_pred CCcEEEEecCCccCHHHHHHHHH--CCCCeEEe
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLK--GGAKKVII 112 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~--~G~~~~vi 112 (254)
++|+||.|+|.....+.++.+.. .|+ +|+
T Consensus 142 ~aDlVilavP~~~~~~~~~~l~~l~~~~--iv~ 172 (374)
T PRK11199 142 DAGMVIVSVPIHLTEEVIARLPPLPEDC--ILV 172 (374)
T ss_pred cCCEEEEeCcHHHHHHHHHHHhCCCCCc--EEE
Confidence 78999999999877776665443 344 554
No 140
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=93.47 E-value=0.083 Score=45.42 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=70.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
+||+++|+|.+|+.+++-|.+++.+.-..+....... .+.. .... . ++. .. . .+.... ....
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~----~l~~--~--~g~---~~-~-~~~~~~---~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRA----ALAA--E--YGV---VT-T-TDNQEA---VEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHH----HHHH--H--cCC---cc-c-CcHHHH---HhhC
Confidence 6999999999999999999988743322222211100 0000 0000 1 111 11 1 222222 3579
Q ss_pred cEEEEecCCccCHHHHHHHHH--CCCCeEEecCC---C--------CCC--CeEEeeeCcccccCCCCeEEcCChhhHhH
Q 025368 84 EYVVESTGVFTDKDKAAAHLK--GGAKKVIISAP---S--------KDA--PMFVVGVNENEYKPELNIVSNASCTTNCL 148 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~--~G~~~~viS~~---~--------~~~--~~~v~~vn~~~i~~~~~iVa~p~C~~t~~ 148 (254)
|+||+|.-+..-.+.++.+.. .+. .|||-- + ++. -+++|-.+..--..-..+..+.+|.....
T Consensus 64 dvv~LavKPq~~~~vl~~l~~~~~~~--lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~ 141 (266)
T COG0345 64 DVVFLAVKPQDLEEVLSKLKPLTKDK--LVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDK 141 (266)
T ss_pred CEEEEEeChHhHHHHHHHhhcccCCC--EEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHH
Confidence 999999999776666666553 343 555433 1 111 13345444332222344666677777666
Q ss_pred HHHHHHHh
Q 025368 149 APLAKVIH 156 (254)
Q Consensus 149 ~l~l~pL~ 156 (254)
..+..-|.
T Consensus 142 ~~v~~l~~ 149 (266)
T COG0345 142 AFVEALLS 149 (266)
T ss_pred HHHHHHHH
Confidence 55555443
No 141
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.44 E-value=0.4 Score=44.43 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=24.9
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+||.|.|+ |++|+.|++.|.++. .++..+
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~l 149 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVV 149 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHCc-CEEEEE
Confidence 69999999 999999999999884 566554
No 142
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.44 E-value=0.35 Score=42.10 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=59.2
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
-||-|.|. |..|..+++-|...+ +++++-..- +++. . .+ .| ++.+. +.++++... +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g-~~~v~~V~p------~~~~-~--------~v--~G--~~~y~--sv~dlp~~~-~ 63 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYG-TNIVGGVTP------GKGG-T--------TV--LG--LPVFD--SVKEAVEET-G 63 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCC-CCEEEEECC------CCCc-c--------ee--cC--eeccC--CHHHHhhcc-C
Confidence 58999999 999999999998775 554442110 1100 0 11 12 34432 334443100 2
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP 115 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~ 115 (254)
+|+++.+.|.....+.++++.++|+|.+|| +++
T Consensus 64 ~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf 98 (286)
T TIGR01019 64 ANASVIFVPAPFAADAIFEAIDAGIELIVCITEGI 98 (286)
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 799999999999999999999999988876 555
No 143
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.38 E-value=0.38 Score=44.49 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=56.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEE--------ECCEEEEEee-----
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLL--------FGEKPVTVFG----- 69 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~--------~~~~~~~~~~----- 69 (254)
-.||+|.|+|.+|+.++++|.+. ...++++.... | .+..+.|-.+. .++ .+.-+.
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~-----G-----~iyn~~GLD~~~L~~~k~~~~~-~l~~~~~~~~~ 299 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSS-----G-----YVYDEEGIDLEKLKEIKEVRRG-RISEYAEEFGA 299 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCC-----c-----eEECCCCCCHHHHHHHHHhcCC-chhhhhhhcCC
Confidence 36999999999999999999877 48888875321 1 11111110000 000 010000
Q ss_pred -cCCCCCCCcccCCCcEEEEecCCc-cCHHHHHHHHHCCCCeEEe
Q 025368 70 -VRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 70 -~~~~~~~~~~~~~~Dvv~~a~~~~-~s~~~~~~~~~~G~~~~vi 112 (254)
..+.+++ |. .++||++-|+... .+.+.+..+.+.+|| +|+
T Consensus 300 ~~i~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 300 EYLEGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred eecCCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 0123343 42 4799999998765 477778888777885 444
No 144
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.20 E-value=0.26 Score=42.74 Aligned_cols=86 Identities=19% Similarity=0.264 Sum_probs=45.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCE-EEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEK-PVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (254)
|||+|+|+|.+|..+...|.+.. .++..+. +. .+.... +. ..|..+. .+. ........+++++ ..
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~-r~-~~~~~~-----~~-~~g~~~~-~~~~~~~~~~~~~~~~~----~~ 66 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA-RR-GAHLDA-----LN-ENGLRLE-DGEITVPVLAADDPAEL----GP 66 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE-CC-hHHHHH-----HH-HcCCccc-CCceeecccCCCChhHc----CC
Confidence 38999999999999999998763 4544332 21 111000 01 1110110 121 0111111222222 57
Q ss_pred CcEEEEecCCccCHHHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
+|+||.|++.....+.++.+.
T Consensus 67 ~d~vila~k~~~~~~~~~~l~ 87 (304)
T PRK06522 67 QDLVILAVKAYQLPAALPSLA 87 (304)
T ss_pred CCEEEEecccccHHHHHHHHh
Confidence 899999999887666665544
No 145
>PRK05086 malate dehydrogenase; Provisional
Probab=93.19 E-value=0.7 Score=40.76 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred cEEEEEcc-CHHHHHHHHHHHc
Q 025368 4 VKIGINGF-GRIGRLVARVILQ 24 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~ 24 (254)
|||+|+|+ |.+|..++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 49999999 9999999988855
No 146
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.19 E-value=0.098 Score=46.18 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=49.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCE----EEEEeecCCCCCCCcc
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEK----PVTVFGVRNPEEIPWA 79 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~----~~~~~~~~~~~~~~~~ 79 (254)
+||+|+|+|..|..|...|.++. .+ +.+..+..+ ...+.. .. +... +.| .+. .+.. ..|.++.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~-V~lw~r~~~-~~~~i~-~~-~~N~-~yL--p~i~lp~~l~a--t~Dl~~a--- 68 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HE-VRLWGRDEE-IVAEIN-ET-RENP-KYL--PGILLPPNLKA--TTDLAEA--- 68 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-Ce-eEEEecCHH-HHHHHH-hc-CcCc-ccc--CCccCCccccc--ccCHHHH---
Confidence 69999999999999999999874 22 223332210 000000 00 0000 011 111 1222 1233333
Q ss_pred cCCCcEEEEecCCccCHHHHHHH---HHCCC
Q 025368 80 ETGAEYVVESTGVFTDKDKAAAH---LKGGA 107 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~~~---~~~G~ 107 (254)
.+++|+++++.|+..-++.++.+ +..+.
T Consensus 69 ~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~ 99 (329)
T COG0240 69 LDGADIIVIAVPSQALREVLRQLKPLLLKDA 99 (329)
T ss_pred HhcCCEEEEECChHHHHHHHHHHhhhccCCC
Confidence 46799999999998777776654 34555
No 147
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.16 E-value=0.1 Score=46.26 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=23.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
+|||+|+|+|.+|..+...|.+.. .++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G-~~V~ 31 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKG-VPVR 31 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC-CeEE
Confidence 469999999999999999998764 5543
No 148
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.14 E-value=0.16 Score=44.64 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEccCHHHHHHHHHHHcCC
Q 025368 5 KIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p 26 (254)
||+|+|+|++|..++..|....
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 8999999999999999998775
No 149
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.12 E-value=0.14 Score=44.28 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=26.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|++.||+|+|+|++|..+...++.+. .++..
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g-~~V~~ 31 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAG-YDVVM 31 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCC-CceEE
Confidence 77779999999999999999999884 56544
No 150
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.11 E-value=0.11 Score=45.96 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=24.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++|||+|+|.+|+++.+.|..- ++++.+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~~~ 171 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVIGY 171 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEE
Confidence 5899999999999999999877 4776553
No 151
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.09 E-value=0.14 Score=39.73 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
..||+|+|+|.+|+.+++.|.++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g 42 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG 42 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC
Confidence 468999999999999999998774
No 152
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.95 E-value=0.094 Score=46.51 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=51.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..|+..++.+.....++.+.++.+..+. .-++. ..+. . . + +..+..+ .+.++. ..++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~-~~~~--~--~--~-~~~~~~~--~~~~~~---~~~a 193 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFA-QEIQ--S--K--F-NTEIYVV--NSADEA---IEEA 193 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHH-HHHH--H--h--c-CCcEEEe--CCHHHH---HhcC
Confidence 5899999999999998887755557777776553211 01111 0000 0 0 1 1112222 233332 3579
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+.|||+.. .... ..++.|+
T Consensus 194 DiVi~aT~s~~-p~i~-~~l~~G~ 215 (325)
T PRK08618 194 DIIVTVTNAKT-PVFS-EKLKKGV 215 (325)
T ss_pred CEEEEccCCCC-cchH-HhcCCCc
Confidence 99999999873 3444 6778898
No 153
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.75 E-value=0.16 Score=46.66 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.++||+|+|.||+|..+...|.++. +++..+
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~ 32 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQ-KQVIGV 32 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCC-CEEEEE
Confidence 77889999999999999999999874 666543
No 154
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=92.75 E-value=0.22 Score=38.08 Aligned_cols=31 Identities=35% Similarity=0.349 Sum_probs=27.8
Q ss_pred EEEEcc-CHHHHHHHHHHHcCC-CceeEEeeee
Q 025368 6 IGINGF-GRIGRLVARVILQRD-DVELVATYMF 36 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p-~~~v~~~~~~ 36 (254)
|+|+|+ |.+|.+-++.+.+|| +|+++++...
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~ 33 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG 33 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 689999 999999999999998 5999998654
No 155
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.75 E-value=0.41 Score=41.60 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=22.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|||+|+|+|.+|..+...|.++. .++..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~ 28 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTF 28 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CceEE
Confidence 38999999999999999998763 45433
No 156
>PLN02712 arogenate dehydrogenase
Probab=92.75 E-value=0.2 Score=48.83 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=46.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
++||||+|+|.+|+.+++.|.+.. .++.. +.+.... . . .. . . | +... .+.+++. ...
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~-~dr~~~~---~----~-a~----~--~-G--v~~~--~~~~el~--~~~ 425 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLA-YSRSDYS---D----E-AQ----K--L-G--VSYF--SDADDLC--EEH 425 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCc-CEEEE-EECChHH---H----H-HH----H--c-C--CeEe--CCHHHHH--hcC
Confidence 479999999999999999998764 55543 2221000 0 0 00 0 1 1 1111 2233320 124
Q ss_pred CcEEEEecCCccCHHHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAHL 103 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~ 103 (254)
+|+||.|+|.....+.++.+.
T Consensus 426 aDvVILavP~~~~~~vi~~l~ 446 (667)
T PLN02712 426 PEVILLCTSILSTEKVLKSLP 446 (667)
T ss_pred CCEEEECCChHHHHHHHHHHH
Confidence 899999999877777666543
No 157
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.67 E-value=0.06 Score=41.35 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=44.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
..||.|+|+|-+|+.++..|..+ .++-..+..+..+. .-++. . . +.+..+......+..+. ..+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~r-a~~l~----~-----~--~~~~~~~~~~~~~~~~~---~~~ 75 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPER-AEALA----E-----E--FGGVNIEAIPLEDLEEA---LQE 75 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHH-HHHHH----H-----H--HTGCSEEEEEGGGHCHH---HHT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHH-HHHHH----H-----H--cCccccceeeHHHHHHH---Hhh
Confidence 36999999999999999999988 46644555443211 00110 0 0 11212333322222221 357
Q ss_pred CcEEEEecCCccC
Q 025368 83 AEYVVESTGVFTD 95 (254)
Q Consensus 83 ~Dvv~~a~~~~~s 95 (254)
+|+||.|||.+..
T Consensus 76 ~DivI~aT~~~~~ 88 (135)
T PF01488_consen 76 ADIVINATPSGMP 88 (135)
T ss_dssp ESEEEE-SSTTST
T ss_pred CCeEEEecCCCCc
Confidence 9999999998754
No 158
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.59 E-value=0.46 Score=41.83 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
+||+|+|+|.+|..++-+|....
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~ 23 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQG 23 (313)
T ss_pred CeEEEECCChHHHHHHHHHhccc
Confidence 49999999999999999997665
No 159
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=92.51 E-value=0.22 Score=44.02 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
-+||+|+|+|.+|..+++.|.++. +++
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG-~~V 29 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSG-LNV 29 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCC-CeE
Confidence 469999999999999999998774 554
No 160
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.38 E-value=0.21 Score=39.57 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=39.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
|+|||++|.|.+|..+.+.|.++. +++.. +.+..+. ..++. .. + .... .++.++ .++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~-~d~~~~~-~~~~~------~~-------g--~~~~--~s~~e~---~~~ 57 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG-YEVTV-YDRSPEK-AEALA------EA-------G--AEVA--DSPAEA---AEQ 57 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT-TEEEE-EESSHHH-HHHHH------HT-------T--EEEE--SSHHHH---HHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC-CeEEe-eccchhh-hhhhH------Hh-------h--hhhh--hhhhhH---hhc
Confidence 369999999999999999999884 77543 3322110 01110 11 2 2222 344443 357
Q ss_pred CcEEEEecCCcc
Q 025368 83 AEYVVESTGVFT 94 (254)
Q Consensus 83 ~Dvv~~a~~~~~ 94 (254)
+|+||.|++...
T Consensus 58 ~dvvi~~v~~~~ 69 (163)
T PF03446_consen 58 ADVVILCVPDDD 69 (163)
T ss_dssp BSEEEE-SSSHH
T ss_pred ccceEeecccch
Confidence 899999999753
No 161
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.25 E-value=0.21 Score=43.96 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=24.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMF 36 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~ 36 (254)
..||+|+|+|.+|+.+++.|..+. ..-+.+..+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKG-VAEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence 369999999999999999998753 333344433
No 162
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=92.17 E-value=0.65 Score=40.36 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=24.4
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
+|.|.|+ |++|+.+++.|.++. .++..+.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~ 31 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG-EEVRVLV 31 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC-CEEEEEE
Confidence 8999999 999999999999885 5665543
No 163
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=92.09 E-value=0.84 Score=39.28 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
-.|||+|+ |-+|..+.|.|..|-
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~ 191 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKV 191 (351)
T ss_pred CeEEEecCCchHHHHHHHHhcccc
Confidence 47999999 999999999999774
No 164
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=92.04 E-value=0.22 Score=44.94 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=29.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCC-ceeEEeeee
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDD-VELVATYMF 36 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~-~~v~~~~~~ 36 (254)
+||+|+|+ |.+|.+.++.+.+||+ |+++++...
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~ 36 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG 36 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC
Confidence 69999999 9999999999999975 999987653
No 165
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.02 E-value=0.14 Score=45.97 Aligned_cols=81 Identities=15% Similarity=0.084 Sum_probs=45.2
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCCc
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAE 84 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~D 84 (254)
||+|+|.|.+|..+.+.|.++. +++. ++... ...-.. ....+ + +...... .+.++. ..++|
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~-i~~~~--~~~~~~-----~~a~~--~---~~~~~~~--~~~~~~---~~~aD 62 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVF-IIGYD--PSAAQL-----ARALG--F---GVIDELA--ADLQRA---AAEAD 62 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeE-EEEeC--CCHHHH-----HHHhc--C---CCCcccc--cCHHHH---hcCCC
Confidence 7999999999999999998763 3432 22221 110000 00000 0 1000010 122222 25799
Q ss_pred EEEEecCCccCHHHHHHHHH
Q 025368 85 YVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 85 vv~~a~~~~~s~~~~~~~~~ 104 (254)
+||.|+|.....+.++.+..
T Consensus 63 lVilavP~~~~~~vl~~l~~ 82 (359)
T PRK06545 63 LIVLAVPVDATAALLAELAD 82 (359)
T ss_pred EEEEeCCHHHHHHHHHHHhh
Confidence 99999999877777766653
No 166
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.74 E-value=0.29 Score=39.34 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=23.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|||+|+|.+|+++++.|..- .+++.+.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~ 65 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF-GMRVIGY 65 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT-T-EEEEE
T ss_pred CEEEEEEEcCCcCeEeeeeecC-CceeEEe
Confidence 6999999999999999999977 4666554
No 167
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.72 E-value=0.22 Score=40.42 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=23.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|||+|+|.||+|.-+.-.|+++. +++.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV 29 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEECCCcchHHHHHHHHhCC-CEEEEE
Confidence 49999999999999999999884 777775
No 168
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.53 E-value=0.28 Score=43.47 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=25.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
+||.|.|+ |++|..|++.|.++...++..+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence 58999999 99999999999876446766653
No 169
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.31 E-value=0.26 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
++||+|+|+|.+|..+...|.++.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g 30 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG 30 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC
Confidence 479999999999999999998774
No 170
>PRK08219 short chain dehydrogenase; Provisional
Probab=91.23 E-value=0.31 Score=39.97 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=25.7
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+|+++.|.|+ |.+|+.+++.|+++ .++..+
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~ 32 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT--HTLLLG 32 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh--CCEEEE
Confidence 66679999999 99999999999887 555444
No 171
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.17 E-value=0.82 Score=40.24 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=48.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCE--EEEEeecCCCCCCCcccC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEK--PVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~--~~~~~~~~~~~~~~~~~~ 81 (254)
|||.|+|+|.+|..+.-.|.+.+ -+ +.+..+. ...-++ . ..|-.+.-.+. ........+++.. .
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~-V~~~~R~--~~~~~l-----~-~~GL~i~~~~~~~~~~~~~~~~~~~~----~ 66 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HD-VTLLVRS--RRLEAL-----K-KKGLRIEDEGGNFTTPVVAATDAEAL----G 66 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-Ce-EEEEecH--HHHHHH-----H-hCCeEEecCCCccccccccccChhhc----C
Confidence 49999999999999999999886 23 3333332 110111 1 11211111111 1122222233333 4
Q ss_pred CCcEEEEecCCccCHHHHHHHHH
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~ 104 (254)
.+|+||.++-.....+.++.+..
T Consensus 67 ~~Dlviv~vKa~q~~~al~~l~~ 89 (307)
T COG1893 67 PADLVIVTVKAYQLEEALPSLAP 89 (307)
T ss_pred CCCEEEEEeccccHHHHHHHhhh
Confidence 79999999998887777766543
No 172
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.14 E-value=0.28 Score=42.95 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=23.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.||.|+|+|.+|+.+++.|.... .++..
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v 180 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALG-ANVTV 180 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CEEEE
Confidence 69999999999999999999875 55433
No 173
>PLN00203 glutamyl-tRNA reductase
Probab=91.00 E-value=0.28 Score=46.31 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=47.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
..+|+|+|+|.+|+.+++.|..++ +.-+.++.+..+. .-.+ . . . +++..+.+....+..+. ..+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~er-a~~L-----a-~---~--~~g~~i~~~~~~dl~~a---l~~ 329 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEER-VAAL-----R-E---E--FPDVEIIYKPLDEMLAC---AAE 329 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHH-HHHH-----H-H---H--hCCCceEeecHhhHHHH---Hhc
Confidence 368999999999999999998875 4333444332111 0000 0 0 0 11111222111122121 357
Q ss_pred CcEEEEecCCc---cCHHHHHHHH
Q 025368 83 AEYVVESTGVF---TDKDKAAAHL 103 (254)
Q Consensus 83 ~Dvv~~a~~~~---~s~~~~~~~~ 103 (254)
+|+||.||+.. ...++++.+.
T Consensus 330 aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 330 ADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred CCEEEEccCCCCCeeCHHHHHHhh
Confidence 99999998764 4677777654
No 174
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.89 E-value=0.57 Score=43.22 Aligned_cols=89 Identities=26% Similarity=0.235 Sum_probs=51.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
..+|.|+|+|.+|..+++.|++.. .++..... . .. ..+. .... .+.-.+ +.++....+++. ..+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~d~-~--~~-~~~~-~~~~-----~l~~~~--~~~~~~~~~~~~---~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLG-AKVILTDE-K--EE-DQLK-EALE-----ELGELG--IELVLGEYPEEF---LEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC-C--ch-HHHH-HHHH-----HHHhcC--CEEEeCCcchhH---hhc
Confidence 469999999889999999999885 56544321 1 00 0000 0000 010001 222221222222 257
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
+|+||.+++.......+..+.+.|+
T Consensus 69 ~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 69 VDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCC
Confidence 9999999887666677777888887
No 175
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=90.85 E-value=0.34 Score=44.68 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=29.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCC-ceeEEeeee
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVATYMF 36 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~-~~v~~~~~~ 36 (254)
++||+|+|+ |.+|.+.++++.+||+ |+++++...
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag 92 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG 92 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC
Confidence 369999999 9999999999999976 888887653
No 176
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.66 E-value=1.8 Score=34.14 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=24.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.||.|+|+|.+|...++.|.+.. .+++-+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VI 42 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVV 42 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence 69999999999999999998764 555543
No 177
>PRK05865 hypothetical protein; Provisional
Probab=90.60 E-value=1 Score=45.10 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=23.9
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||.|.|+ |++|+.+++.|.++. .++..+
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l 30 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGI 30 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEE
Confidence 8999999 999999999999874 566554
No 178
>PRK12320 hypothetical protein; Provisional
Probab=90.47 E-value=1.2 Score=43.71 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=23.8
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||.|.|+ |++|+.|++.|.+.. .++..+
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~l 30 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGI 30 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 8999999 999999999998774 566554
No 179
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.45 E-value=1.6 Score=38.46 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
+||+|+|+ |.+|..++-.|..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 49999999 999999999988775
No 180
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.41 E-value=0.46 Score=41.28 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.5
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|...||+|+|+|++|..+...++.+. +++..
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G-~~V~l 31 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTG-YDVTI 31 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcC-CeEEE
Confidence 55569999999999999999998884 56544
No 181
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.33 E-value=0.54 Score=39.54 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=28.0
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEEee
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
+.+||+|.|+|.+|+.+++.|.+. .+.++++.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~ 61 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVS 61 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEE
Confidence 457999999999999999999887 58888775
No 182
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.32 E-value=0.23 Score=43.25 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|+|+|+|.+|+.+++.|..+. .++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G-~~V~ 178 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG-ARVF 178 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC-CEEE
Confidence 58999999999999999999885 5543
No 183
>PRK06046 alanine dehydrogenase; Validated
Probab=90.28 E-value=0.23 Score=44.05 Aligned_cols=88 Identities=23% Similarity=0.205 Sum_probs=52.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..|+..++.+...+.++.+.++.+..+. .-++. ..+. . .+ +..+..+ .+.++. .. +
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~-~~~~~-~~~~--~--~~---~~~v~~~--~~~~~~---l~-a 194 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSS-AEKFV-ERMS--S--VV---GCDVTVA--EDIEEA---CD-C 194 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHH-HHHHH-HHHH--h--hc---CceEEEe--CCHHHH---hh-C
Confidence 5899999999999999999888788888887654211 01111 0000 0 00 1112222 233333 23 8
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+.|||+..-. .-...++.|+
T Consensus 195 DiVv~aTps~~P~-~~~~~l~~g~ 217 (326)
T PRK06046 195 DILVTTTPSRKPV-VKAEWIKEGT 217 (326)
T ss_pred CEEEEecCCCCcE-ecHHHcCCCC
Confidence 9999999975321 2234457887
No 184
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.25 E-value=0.7 Score=31.69 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.0
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||.|+|+|++|-|++..|.+.. .++.-+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli 28 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLI 28 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEE
Confidence 7899999999999999998763 565443
No 185
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.24 E-value=1.5 Score=38.38 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=23.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.|||+|+|+|.+|.-+.-.|.+.. .++..+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv 31 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG-LPVRLI 31 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-CCeEEE
Confidence 369999999999999999888653 454443
No 186
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=90.23 E-value=0.44 Score=42.37 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.++||-|.|+ |++|..|++.|.++. .++..+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~ 45 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGL 45 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEE
Confidence 34679999999 999999999999885 566554
No 187
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.18 E-value=0.48 Score=43.85 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=47.2
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
||+|+|+ |.+|..+.+.|.+.. .++.. +.+.... .. .... .+ | +... .+.++. ..++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v-~~r~~~~--~~----~~a~----~~---g--v~~~--~~~~e~---~~~a 59 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIV-TGRDPKK--GK----EVAK----EL---G--VEYA--NDNIDA---AKDA 59 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEE-EECChHH--HH----HHHH----Hc---C--Ceec--cCHHHH---hccC
Confidence 8999996 999999999998764 45433 2221000 00 0000 00 1 1111 122221 2578
Q ss_pred cEEEEecCCccCHHHHHHHH---HCCCCeEEe
Q 025368 84 EYVVESTGVFTDKDKAAAHL---KGGAKKVII 112 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~---~~G~~~~vi 112 (254)
|+||.|+|.....+.++.+. ..|+ +++
T Consensus 60 DvVIlavp~~~~~~vl~~l~~~l~~~~--iVi 89 (437)
T PRK08655 60 DIVIISVPINVTEDVIKEVAPHVKEGS--LLM 89 (437)
T ss_pred CEEEEecCHHHHHHHHHHHHhhCCCCC--EEE
Confidence 99999999877666665554 3455 554
No 188
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.04 E-value=3.3 Score=34.07 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=23.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
..+|-|+|+|.+|...++.|.+.. .++.-
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~V 38 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVV 38 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CeEEE
Confidence 369999999999999999988874 45443
No 189
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=90.04 E-value=0.24 Score=43.90 Aligned_cols=96 Identities=22% Similarity=0.257 Sum_probs=54.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.++||+|+|..|+..++.+.....++-+.++.+..+. ...+. ..+. . + +..+... .++++. ..++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~-~~~~~-~~~~-----~--~-g~~v~~~--~~~~ea---v~~a 193 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPST-REKFA-LRAS-----D--Y-EVPVRAA--TDPREA---VEGC 193 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHH-HHHH-----h--h-CCcEEEe--CCHHHH---hccC
Confidence 6899999999999988988877667767776554221 11111 0000 0 1 1112222 344443 3689
Q ss_pred cEEEEecCCccCHHHHHHHHHCCCCeEEecCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~ 115 (254)
|+|+.|||...- -.-...++.|+-+.-|+++
T Consensus 194 DiVitaT~s~~P-~~~~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 194 DILVTTTPSRKP-VVKADWVSEGTHINAIGAD 224 (325)
T ss_pred CEEEEecCCCCc-EecHHHcCCCCEEEecCCC
Confidence 999999987431 1223456788732223544
No 190
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.03 E-value=0.52 Score=40.90 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|.+.||+|+|+|.+|..+...++.+. .++..
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G-~~V~l 31 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHG-FDVTI 31 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcC-CeEEE
Confidence 55579999999999999999998763 55433
No 191
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.68 E-value=5 Score=33.10 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=51.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee-cCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (254)
.||.|+|+|.+|..-++.|.+.. ..++-+. .. . ...+. .+. ..+ .+.... ....+++ .+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVvs-p~--~-~~~l~--~l~-~~~--------~i~~~~~~~~~~dl----~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG-AQLRVIA-EE--L-ESELT--LLA-EQG--------GITWLARCFDADIL----EG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC-CEEEEEc-CC--C-CHHHH--HHH-HcC--------CEEEEeCCCCHHHh----CC
Confidence 58999999999999999999875 4443321 11 0 00000 000 111 122221 1122233 57
Q ss_pred CcEEEEecCCc-cCHHHHHHHHHCCCCeEEecCC
Q 025368 83 AEYVVESTGVF-TDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 83 ~Dvv~~a~~~~-~s~~~~~~~~~~G~~~~viS~~ 115 (254)
+|+||-|++.. ...+....+.+.|+ .|-..+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~i--lvn~~d 101 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGV--PVNVVD 101 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCC--EEEECC
Confidence 99999998875 55666677777887 443344
No 192
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.65 E-value=1.4 Score=35.41 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.8
Q ss_pred EEEEEccCHHHHHHHHHHHcCC
Q 025368 5 KIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p 26 (254)
||.|+|+|-+|.+++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999998764
No 193
>PRK07236 hypothetical protein; Provisional
Probab=89.44 E-value=0.55 Score=42.37 Aligned_cols=32 Identities=13% Similarity=0.032 Sum_probs=26.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|++++|.|||+|.+|..+...|.++. +++.-+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~ 35 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG-WDVDVF 35 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC-CCEEEE
Confidence 66789999999999999999998874 665443
No 194
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.36 E-value=0.53 Score=40.90 Aligned_cols=29 Identities=31% Similarity=0.641 Sum_probs=24.1
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
|+ +||+|+|.|++|..+.+.|.++ .+++.
T Consensus 1 ~~-~~IgviG~G~mG~~~a~~l~~~-g~~v~ 29 (296)
T PRK11559 1 MT-MKVGFIGLGIMGKPMSKNLLKA-GYSLV 29 (296)
T ss_pred CC-ceEEEEccCHHHHHHHHHHHHC-CCeEE
Confidence 54 6999999999999999999876 36654
No 195
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=89.29 E-value=0.69 Score=40.96 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=43.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+|||+|+|.+|+.+++.|... .+++.... +...+ + ...... | ..+ .+++++ ...+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G~~ViV~~-r~~~s----~---~~A~~~-------G--~~v---~sl~Ea---ak~A 72 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-GVEVVVGV-RPGKS----F---EVAKAD-------G--FEV---MSVSEA---VRTA 72 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-cCEEEEEE-Ccchh----h---HHHHHc-------C--CEE---CCHHHH---HhcC
Confidence 6899999999999999999877 47764421 11111 0 000011 1 112 133333 3679
Q ss_pred cEEEEecCCccCHHHH
Q 025368 84 EYVVESTGVFTDKDKA 99 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~ 99 (254)
|+|+.++|...+....
T Consensus 73 DVV~llLPd~~t~~V~ 88 (335)
T PRK13403 73 QVVQMLLPDEQQAHVY 88 (335)
T ss_pred CEEEEeCCChHHHHHH
Confidence 9999999976555544
No 196
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=89.23 E-value=0.88 Score=39.85 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEccCHHHHHHHHHHHcCCC
Q 025368 6 IGINGFGRIGRLVARVILQRDD 27 (254)
Q Consensus 6 V~IvG~G~~G~~l~~~L~~~p~ 27 (254)
|+|+|+|++|..++-.|+..+-
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~ 22 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL 22 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC
Confidence 5899999999999998887753
No 197
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.96 E-value=0.69 Score=37.34 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.3
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||+|+|+|.+|+.+...++.+ .+++...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~ 28 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLY 28 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEE
Confidence 799999999999999999988 5776553
No 198
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.91 E-value=0.71 Score=40.16 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=25.2
Q ss_pred CC-CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~-~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+ +.||+|+|+|.+|..+++.++.+. +++..
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G-~~V~~ 32 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAG-MDVWL 32 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcC-CeEEE
Confidence 54 368999999999999999998874 66543
No 199
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.90 E-value=0.79 Score=41.38 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=21.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
++||+|+|+|..|..|...|.++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~ 34 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENT 34 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC
Confidence 469999999999999999998663
No 200
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.75 E-value=1.4 Score=41.05 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=52.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
..+|.|+|+|.+|.++++.|.++. .++..+-... ....... . +.+.-.| +.++...+.+ . ..+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~--~~~~~~~----~----~~l~~~g--v~~~~~~~~~-~---~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELG-ARVTVVDDGD--DERHRAL----A----AILEALG--ATVRLGPGPT-L---PED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCc--hhhhHHH----H----HHHHHcC--CEEEECCCcc-c---cCC
Confidence 358999999999999999998874 6654432111 0000000 0 0010012 2222212222 1 246
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
+|+|+.+++.......+..+.+.|+ .++
T Consensus 79 ~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~ 106 (480)
T PRK01438 79 TDLVVTSPGWRPDAPLLAAAADAGI--PVW 106 (480)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCC--eec
Confidence 8999999887666667777788887 455
No 201
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=88.68 E-value=0.37 Score=41.60 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeee
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATYMF 36 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~ 36 (254)
+.||+|+|+ |-+|+-|--+|..+|.+.--++|..
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi 62 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI 62 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence 479999999 9999999888888887665555544
No 202
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.64 E-value=1.4 Score=39.10 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
..||+|+|+ |.+|..++-.|....
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 469999999 999999999888654
No 203
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.49 E-value=0.69 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEccCHHHHHHHHHHHcCCC
Q 025368 5 KIGINGFGRIGRLVARVILQRDD 27 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~ 27 (254)
||+|+|+|.+|..++..|....-
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~ 24 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI 24 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC
Confidence 89999999999999999987753
No 204
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.35 E-value=0.8 Score=39.75 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=24.4
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+..||+|+|+|.+|..+...|+.+. +++..
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G-~~V~l 32 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAG-YDVLL 32 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CeEEE
Confidence 3469999999999999999998773 56543
No 205
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=88.21 E-value=1.3 Score=37.88 Aligned_cols=88 Identities=17% Similarity=0.300 Sum_probs=48.9
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCC-Cc-cc
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEI-PW-AE 80 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~-~~-~~ 80 (254)
|||-|+|+ |+ |+.|++.|.+.. .++...+. +.+|... .. ..| +..+.. ...+.+++ +| ..
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~----t~~~~~~---~~-~~g------~~~v~~-g~l~~~~l~~~l~~ 63 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG-IEILVTVT----TSEGKHL---YP-IHQ------ALTVHT-GALDPQELREFLKR 63 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC-CeEEEEEc----cCCcccc---cc-ccC------CceEEE-CCCCHHHHHHHHHh
Confidence 38999999 99 999999998775 56544332 1122211 01 010 111111 01122222 11 22
Q ss_pred CCCcEEEEecCCcc---CHHHHHHHHHCCCC
Q 025368 81 TGAEYVVESTGVFT---DKDKAAAHLKGGAK 108 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~---s~~~~~~~~~~G~~ 108 (254)
.++|+|+||+.+++ |......+.+.|++
T Consensus 64 ~~i~~VIDAtHPfA~~is~~a~~a~~~~~ip 94 (256)
T TIGR00715 64 HSIDILVDATHPFAAQITTNATAVCKELGIP 94 (256)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCc
Confidence 46999999999864 44455667777874
No 206
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.13 E-value=1.4 Score=40.38 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=51.0
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|...||.|+|.|.+|..+++.|.+.. .++... |... .... ..+ .+ +. ... .+.+.+ .
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G-~~V~g~-----D~~~-----~~~~-~~~-~~---~~--~~~--~~~~~~---~ 57 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKG-VYVIGV-----DKSL-----EALQ-SCP-YI---HE--RYL--ENAEEF---P 57 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCC-CEEEEE-----eCCc-----cccc-hhH-HH---hh--hhc--CCcHHH---h
Confidence 66679999999999999999998775 444331 2100 0000 000 00 00 000 112222 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCC
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
.++|++|.+.+......++++++++|++
T Consensus 58 ~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 58 EQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred cCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 4689999888766667788899999983
No 207
>PLN02427 UDP-apiose/xylose synthase
Probab=88.10 E-value=0.78 Score=41.37 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=25.9
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++||.|.|+ |++|+.|++.|.++...++..+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 369999999 9999999999998744566655
No 208
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.97 E-value=0.8 Score=42.83 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=25.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC-CceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRD-DVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p-~~~v~~~ 33 (254)
|||+|+|.||+|..+.-.|+++. ++++.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv 32 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV 32 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 59999999999999999998763 5777665
No 209
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=87.68 E-value=1.1 Score=37.39 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=27.1
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEEee
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
+.+||+|.|+|.+|+.+++.|.+. ...++.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vs 53 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVS 53 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE
Confidence 347999999999999999999988 46677765
No 210
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.63 E-value=1.2 Score=34.35 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=43.5
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEE--EEEeecCCCCCCCcccCCC
Q 025368 6 IGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP--VTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 6 V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 83 (254)
|+|+|+|.+|..+...|.+ ...++..+.-.. .... +. ..|..+...... .........+ ......+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~---~~~~-----~~-~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP---RLEA-----IK-EQGLTITGPDGDETVQPPIVISAP--SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH---HHHH-----HH-HHCEEEEETTEEEEEEEEEEESSH--GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc---cHHh-----hh-heeEEEEecccceecccccccCcc--hhccCCC
Confidence 6899999999999999977 345655443221 0000 01 111122222211 1111101111 0013578
Q ss_pred cEEEEecCCccCHHHHHHH
Q 025368 84 EYVVESTGVFTDKDKAAAH 102 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~ 102 (254)
|+||.|+-.....+.++.+
T Consensus 69 D~viv~vKa~~~~~~l~~l 87 (151)
T PF02558_consen 69 DLVIVAVKAYQLEQALQSL 87 (151)
T ss_dssp SEEEE-SSGGGHHHHHHHH
T ss_pred cEEEEEecccchHHHHHHH
Confidence 9999999887777666553
No 211
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.61 E-value=0.87 Score=41.63 Aligned_cols=33 Identities=33% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCC-CceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRD-DVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p-~~~v~~~ 33 (254)
|+++||-|+|+|+.|..+++.|..++ +++++-+
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLV 34 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLV 34 (405)
T ss_pred CCCceEEEECCcHHHHHHHHHhhhcCCCCcEEEE
Confidence 67889999999999999999999885 5655553
No 212
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=87.56 E-value=3.2 Score=35.28 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.6
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 6 IGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
|-|.|+ |++|..+++.|.+.. .++..+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~ 29 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILT 29 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEe
Confidence 468999 999999999998874 6766543
No 213
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.51 E-value=1.9 Score=37.85 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.5
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~ 31 (254)
++|+|+|. |.+|+-+.++|.++. ..+.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~g-atVt 187 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAH-CSVT 187 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC-CEEE
Confidence 68999999 799999999998773 5543
No 214
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=87.38 E-value=0.78 Score=41.96 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=50.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.||.|+|+|-+|..+++.|.++. +.-..+..+.+.. .+ .+. . . +++..+.. .+..+. ...+
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g-~~~i~IaNRT~er--A~----~La---~-~--~~~~~~~l---~el~~~---l~~~ 239 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKG-VKKITIANRTLER--AE----ELA---K-K--LGAEAVAL---EELLEA---LAEA 239 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC-CCEEEEEcCCHHH--HH----HHH---H-H--hCCeeecH---HHHHHh---hhhC
Confidence 58999999999999999999995 5444444443221 00 000 0 1 12222222 111111 3679
Q ss_pred cEEEEecCCc---cCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVF---TDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~---~s~~~~~~~~~~G~ 107 (254)
|+||.||+.- .+.+.++.+++...
T Consensus 240 DvVissTsa~~~ii~~~~ve~a~~~r~ 266 (414)
T COG0373 240 DVVISSTSAPHPIITREMVERALKIRK 266 (414)
T ss_pred CEEEEecCCCccccCHHHHHHHHhccc
Confidence 9999998753 46677777766543
No 215
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.36 E-value=2 Score=40.01 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=49.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
..||+|+|+|..|...+|+|.++. .++... |.. +.. .......+.-.+ ..++...+++.+ .+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g-~~v~~~-----d~~--~~~----~~~~~~~l~~~~--~~~~~~~~~~~~----~~ 69 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHL-PAQALT-----LFC--NAV----EAREVGALADAA--LLVETEASAQRL----AA 69 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcC-CEEEEE-----cCC--Ccc----cchHHHHHhhcC--EEEeCCCChHHc----cC
Confidence 369999999999999999999884 554331 110 000 000000111011 122221222333 56
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
+|+|+-+.+-..+...+.++.+.|+ .|+
T Consensus 70 ~d~vV~SpgI~~~~p~~~~a~~~~i--~i~ 97 (468)
T PRK04690 70 FDVVVKSPGISPYRPEALAAAARGT--PFI 97 (468)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCC--cEE
Confidence 8999976554455566777788887 444
No 216
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.28 E-value=0.69 Score=42.60 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=22.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|+|+|+|.+|+.+++.+.... ..+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G-a~Vi 239 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG-ARVI 239 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEE
Confidence 58999999999999999998774 5543
No 217
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.27 E-value=1 Score=39.43 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=24.9
Q ss_pred CCC-cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGK-VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~-~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|.+ .||+|+|+|.+|..+...|.++. +++..
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g-~~V~~ 32 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKG-LQVVL 32 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCC-CeEEE
Confidence 544 58999999999999999998764 56544
No 218
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=87.03 E-value=0.35 Score=43.23 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEEEccCHHHHHHHHHHHcC
Q 025368 5 KIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~ 25 (254)
||+|+|+|..|..|...|.+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 689999999999999999864
No 219
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.95 E-value=0.91 Score=40.14 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++++.+... ++++.+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~ 176 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLI 176 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEE
Confidence 5999999999999999999866 466544
No 220
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.81 E-value=3.6 Score=36.36 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCC
Q 025368 5 KIGINGF-GRIGRLVARVILQRDD 27 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~ 27 (254)
||+|+|+ |.+|..++-.|...+-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~ 24 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY 24 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC
Confidence 7999999 9999999998887753
No 221
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=86.81 E-value=0.93 Score=40.53 Aligned_cols=33 Identities=36% Similarity=0.389 Sum_probs=29.2
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCC-ceeEEeee
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDD-VELVATYM 35 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~-~~v~~~~~ 35 (254)
|+|+.|+|. |.+|.+-+..+.++|+ |+++++..
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~a 35 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAA 35 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEec
Confidence 369999999 9999999999999986 78888654
No 222
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.78 E-value=1.7 Score=38.48 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCc
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDV 28 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~ 28 (254)
.||+|+|+ |.+|..+...|...+-+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~ 26 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELF 26 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCcc
Confidence 48999999 99999999998876533
No 223
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.68 E-value=0.92 Score=40.25 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=58.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC--CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD--DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p--~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
.+|.||+|+|.+++..++.|..-| +..++++...+. +.+-.|. . .. .+. +.+++. +-|++. +.
T Consensus 6 ~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~-~~A~~fA----q-~~--~~~----~~k~y~--syEeLa-kd 70 (351)
T KOG2741|consen 6 TIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSL-ERAKEFA----Q-RH--NIP----NPKAYG--SYEELA-KD 70 (351)
T ss_pred eeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccH-HHHHHHH----H-hc--CCC----CCcccc--CHHHHh-cC
Confidence 489999999999999999999888 788888876531 1111110 0 00 010 122221 123331 12
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
..+|+|...+++-+..+++-.++..|.
T Consensus 71 ~~vDvVyi~~~~~qH~evv~l~l~~~K 97 (351)
T KOG2741|consen 71 PEVDVVYISTPNPQHYEVVMLALNKGK 97 (351)
T ss_pred CCcCEEEeCCCCccHHHHHHHHHHcCC
Confidence 468999999999888888888888885
No 224
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.65 E-value=1.2 Score=36.64 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=23.5
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCcee
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v 30 (254)
+++|.|.|+ |.+|+.+++.|.++. .++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g-~~v 32 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADG-AKV 32 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEE
Confidence 368999999 999999999999885 554
No 225
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.12 E-value=0.9 Score=37.55 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCcee
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v 30 (254)
|++++|-|.|+ |.+|++|++.|.++. .++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g-~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAG-ADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CeE
Confidence 34579999999 999999999998875 454
No 226
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=86.06 E-value=2.1 Score=39.70 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=21.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
.+||+|+|+ |.+|..++-.|...
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 479999999 99999999988876
No 227
>PRK08291 ectoine utilization protein EutC; Validated
Probab=85.97 E-value=0.73 Score=40.94 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=48.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..|+..++.+.....++-+.++.+..+. ...+. ..+. . . + +..+..+ .++++. ..++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~-~~~~--~--~--~-g~~v~~~--~d~~~a---l~~a 198 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYA-ADLR--A--E--L-GIPVTVA--RDVHEA---VAGA 198 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHH-HHHh--h--c--c-CceEEEe--CCHHHH---HccC
Confidence 5899999999999988888754347666666654221 11111 0000 0 0 1 1122222 333332 3578
Q ss_pred cEEEEecCCccCHHHH-HHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKA-AAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~-~~~~~~G~ 107 (254)
|+|+.|||.... .. ...++.|.
T Consensus 199 DiVi~aT~s~~p--~i~~~~l~~g~ 221 (330)
T PRK08291 199 DIIVTTTPSEEP--ILKAEWLHPGL 221 (330)
T ss_pred CEEEEeeCCCCc--EecHHHcCCCc
Confidence 999999997532 22 23456776
No 228
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.91 E-value=1.2 Score=39.04 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=23.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+||+|+|+|.+|..+...|+++. .++..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G-~~V~v 30 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG-HEVRL 30 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC-CeeEE
Confidence 58999999999999999999884 56543
No 229
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=85.84 E-value=1.1 Score=39.45 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++++.+..- ++++.+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~ 173 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVY 173 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc-CCEEEE
Confidence 6899999999999999998765 356543
No 230
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=85.84 E-value=1.2 Score=39.61 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=22.4
Q ss_pred cEEEEEccCHHHHHHHHHHH-cCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVIL-QRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~-~~p~~~v~ 31 (254)
.+|||+|+|.+|+++.+.+. .. ++++.
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~ 173 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPIL 173 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEE
Confidence 68999999999999999986 54 35654
No 231
>PRK06932 glycerate dehydrogenase; Provisional
Probab=85.72 E-value=1.2 Score=39.41 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=23.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++.+.+..- ++++.+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~ 175 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL-GMKVLY 175 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEE
Confidence 6999999999999999998765 466544
No 232
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.54 E-value=1.2 Score=38.67 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=24.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+.||||+|+|.+|..+...++.+ .+++..
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G~~V~l 33 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-GVDVLV 33 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-CCEEEE
Confidence 35999999999999999998887 467554
No 233
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.48 E-value=1.2 Score=41.22 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=24.9
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
|++|+|||.|..|..++..|++++..+-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~ 28 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSG 28 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCC
Confidence 4699999999999999999999987654
No 234
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=85.46 E-value=1.1 Score=38.82 Aligned_cols=29 Identities=38% Similarity=0.605 Sum_probs=24.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|||-|+|+ |++|+.|.+.|.++ ++++...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIAT 30 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEe
Confidence 49999999 99999999999876 4665554
No 235
>PRK07574 formate dehydrogenase; Provisional
Probab=85.41 E-value=1.2 Score=40.51 Aligned_cols=28 Identities=43% Similarity=0.564 Sum_probs=23.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++|||+|+|.+|+++++.|... ++++.+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f-G~~V~~ 220 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF-DVKLHY 220 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEE
Confidence 5899999999999999999876 466544
No 236
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=85.40 E-value=1 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
.||+|+|+|.+|..+++.|.+..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G 26 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERG 26 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC
Confidence 69999999999999999998763
No 237
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=84.93 E-value=2.1 Score=36.65 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEcc-CHHHHHHHHHHHcCC
Q 025368 6 IGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p 26 (254)
|+|+|+ |.+|..++..|...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689999 999999999988776
No 238
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=84.90 E-value=0.79 Score=40.66 Aligned_cols=89 Identities=20% Similarity=0.189 Sum_probs=49.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..|+..++.|.....++-+.++.+..+. .-.+. ..+. . . + +..+... .+.++. ..++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a-~~~~--~--~--~-g~~v~~~--~~~~~a---v~~a 195 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALA-LQLS--S--L--L-GIDVTAA--TDPRAA---MSGA 195 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHH-HHHH--h--h--c-CceEEEe--CCHHHH---hccC
Confidence 5899999999999999999754446666666553221 01111 0000 0 0 0 1112221 233332 3579
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+.|||...- -.-...++.|.
T Consensus 196 DiVvtaT~s~~p-~i~~~~l~~g~ 218 (326)
T TIGR02992 196 DIIVTTTPSETP-ILHAEWLEPGQ 218 (326)
T ss_pred CEEEEecCCCCc-EecHHHcCCCc
Confidence 999999997532 11234567787
No 239
>PLN00198 anthocyanidin reductase; Provisional
Probab=84.88 E-value=1.6 Score=38.53 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|++++|.|.|+ |++|+.|++.|++.. .++..+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~ 39 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTT 39 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEE
Confidence 34579999999 999999999999874 566443
No 240
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.72 E-value=1.4 Score=39.21 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=23.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++|||+|+|.+|+.+.+.|... .+++..
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~-G~~V~~ 174 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF-GATITA 174 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEE
Confidence 5899999999999999999876 366544
No 241
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=84.67 E-value=2.4 Score=37.60 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
.+||+|+|+ |.+|..++-.|...+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 579999999 999999999888775
No 242
>PLN02240 UDP-glucose 4-epimerase
Probab=84.65 E-value=1.6 Score=38.56 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=25.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++|.|.|+ |.+|..|++.|.+.. .++..+
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~ 35 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG-YKVVVI 35 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence 469999999 999999999999875 566554
No 243
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.52 E-value=5.6 Score=36.68 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=49.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEE--CCEEEEEeecCCCCCCCccc
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLF--GEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~--~~~~~~~~~~~~~~~~~~~~ 80 (254)
..+|.|+|.|.+|..++++|.++. ..+...-... .. .. . . .+.- .| +.++.....+.+ .
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g-~~v~~~d~~~--~~-~~-~-~--------~l~~~~~g--i~~~~g~~~~~~---~ 65 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG-AEVAAYDAEL--KP-ER-V-A--------QIGKMFDG--LVFYTGRLKDAL---D 65 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCC--Cc-hh-H-H--------HHhhccCC--cEEEeCCCCHHH---H
Confidence 358999999999999999999885 5654431110 00 00 0 0 1100 12 233221212221 2
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
.+.|+|+-+.+-..+...+..+.+.|+
T Consensus 66 ~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 66 NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 468999986665555566777778887
No 244
>PRK05442 malate dehydrogenase; Provisional
Probab=84.44 E-value=2.2 Score=37.86 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
+.||+|+|+ |.+|..++-.|....
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~ 28 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGD 28 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhh
Confidence 579999999 999999988877643
No 245
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.26 E-value=1.5 Score=39.84 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+.+.+.|... .+++..
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~-G~~V~~ 144 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL-GIKTLL 144 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEE
Confidence 6999999999999999999876 466544
No 246
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=84.21 E-value=0.69 Score=41.31 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=58.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe--eeeeeccccccccc--cceeecCCeeEEECCEEEEEeecCCCCCCCc
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT--YMFKYDSVHGQWKH--HELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 78 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~--~~~~~~s~~g~~~~--~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 78 (254)
+.+-|.|| |++|+-+++.+.....++...+ ..+. ..+..+ ..+....+..|. ...+-+....|+++++-
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn----~~KL~~vL~~~~~k~~~~ls--~~~i~i~D~~n~~Sl~e 79 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRN----EKKLQEVLEKVGEKTGTDLS--SSVILIADSANEASLDE 79 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccCceEEEecCC----HHHHHHHHHHHhhccCCCcc--cceEEEecCCCHHHHHH
Confidence 57899999 9999999998877543433222 2221 111100 000111111121 11233332234444432
Q ss_pred ccCCCcEEEEecCCcc--CHHHHHHHHHCCCCeEEecCC
Q 025368 79 AETGAEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 79 ~~~~~Dvv~~a~~~~~--s~~~~~~~~~~G~~~~viS~~ 115 (254)
...++.+|+.|.++.. -...++.+++.|+..++||+-
T Consensus 80 mak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE 118 (423)
T KOG2733|consen 80 MAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE 118 (423)
T ss_pred HHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence 2467899999999852 344567788888877778775
No 247
>PLN02928 oxidoreductase family protein
Probab=84.20 E-value=1.5 Score=39.35 Aligned_cols=28 Identities=32% Similarity=0.422 Sum_probs=24.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++++.|... .+++.+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af-G~~V~~ 187 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF-GVKLLA 187 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEE
Confidence 5999999999999999999876 467654
No 248
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.11 E-value=1.5 Score=40.32 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=23.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|+|+|+|.+|+.+++.+.... .++..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G-a~ViV 230 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV 230 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEEE
Confidence 58999999999999999988774 55433
No 249
>PLN02778 3,5-epimerase/4-reductase
Probab=84.02 E-value=1.3 Score=38.68 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.8
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeE
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~ 31 (254)
++||-|.|+ |++|+.|++.|.++. .++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g-~~V~ 37 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQG-IDFH 37 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC-CEEE
Confidence 479999999 999999999998874 4553
No 250
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=83.78 E-value=1.9 Score=36.27 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=24.9
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++|.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~ 47 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKG-FAVKAG 47 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CEEEEE
Confidence 469999999 999999999998874 566543
No 251
>PRK06436 glycerate dehydrogenase; Provisional
Probab=83.66 E-value=1.8 Score=38.10 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=23.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++.+.|..- .+++.+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~ 150 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF-GMNIYA 150 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEEE
Confidence 6999999999999999988755 466544
No 252
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=83.59 E-value=1.4 Score=40.27 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.0
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
||+|+|.||+|..+...|.+.. +++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G-~~V~~ 28 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLG-HEVTG 28 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcC-CeEEE
Confidence 8999999999999999998764 56544
No 253
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=83.57 E-value=0.52 Score=43.37 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=24.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeee
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMF 36 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~ 36 (254)
.+|+|+|+|.+|+.+++.|.... +.-+.+..+
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence 58999999999999999998764 433334433
No 254
>PRK13243 glyoxylate reductase; Reviewed
Probab=83.55 E-value=1.7 Score=38.64 Aligned_cols=27 Identities=44% Similarity=0.668 Sum_probs=23.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|||+|+|.+|+++.+.|... ++++.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~-G~~V~ 177 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF-GMRIL 177 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEE
Confidence 6999999999999999999866 46654
No 255
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=83.50 E-value=1.5 Score=39.88 Aligned_cols=27 Identities=41% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||+|+|.||+|..+..+++. .+++..+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~Vigv 28 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVAL 28 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEE
Confidence 89999999999999977764 3666554
No 256
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.29 E-value=3.2 Score=36.15 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=21.8
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCcee
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v 30 (254)
.+|+|+|. |.+|+-+..+|.+.. ..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~g-atV 185 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKN-ATV 185 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCC-CEE
Confidence 68999999 999999999998763 443
No 257
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.23 E-value=3.6 Score=38.21 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=49.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCC-CCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (254)
.||+|+|+|..|+.++++|.+.. .++... ... +. ... .... ..+.-.| +.++...+ ++.+ .+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G-~~V~~~-D~~-~~--~~~--~~~~----~~l~~~g--i~~~~~~~~~~~~----~~ 77 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG-AKVTAF-DKK-SE--EEL--GEVS----NELKELG--VKLVLGENYLDKL----DG 77 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC-CEEEEE-CCC-CC--ccc--hHHH----HHHHhCC--CEEEeCCCChHHh----cc
Confidence 58999999999999999999885 554332 110 00 000 0000 0111112 22222111 2222 46
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
+|+||-+.+-..+...+.++.+.|+ .|+|
T Consensus 78 ~dlVV~Spgi~~~~p~~~~a~~~~i--~i~s 106 (458)
T PRK01710 78 FDVIFKTPSMRIDSPELVKAKEEGA--YITS 106 (458)
T ss_pred CCEEEECCCCCCCchHHHHHHHcCC--cEEe
Confidence 8999876443445566777788888 4453
No 258
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.22 E-value=6.5 Score=36.51 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=52.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
++||.|+|.|..|+.+++.|.++. .++...-.+. ++ .+. ..+.+.. ..+.+.....+. .+| ..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~-~~-~~~---------~~~~~~~--~~i~~~~g~~~~-~~~--~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRP-AP-EGL---------AAQPLLL--EGIEVELGSHDD-EDL--AE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCC-Cc-cch---------hhhhhhc--cCceeecCccch-hcc--cc
Confidence 479999999999999999999885 5543321111 11 000 0000000 113332211112 233 57
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
+|+|+..-+-..+-..+.++.++|++
T Consensus 70 ~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 70 FDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 89999876666666788899999983
No 259
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.20 E-value=1.8 Score=38.36 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.||||+|+|.+|..+...++.+ .+++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G~~V~l 35 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-GLDVVA 35 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEE
Confidence 5899999999999999999887 477654
No 260
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.08 E-value=1.9 Score=38.42 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=21.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
++|||+|+|.+|+.+.+.|.+.-++++.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~ 174 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVV 174 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEE
Confidence 5899999999999999998432135543
No 261
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=82.87 E-value=1.9 Score=36.12 Aligned_cols=29 Identities=41% Similarity=0.543 Sum_probs=24.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|++.|+|+|.+|..+++.|.+.. .+++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~I 29 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLI 29 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEE
Confidence 48999999999999999999884 565555
No 262
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=82.52 E-value=1.9 Score=37.61 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
.||+|+|.|++|..+.+.|.++. +++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V 27 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG-HQL 27 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC-CeE
Confidence 49999999999999999998875 554
No 263
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.51 E-value=1.8 Score=40.83 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.||||+|+|.+|..+...++.+ .+++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~l 35 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVLL 35 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEE
Confidence 5899999999999999998877 467643
No 264
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.36 E-value=1.6 Score=40.47 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+..+|+|+|||..|..-+|.|..+ .++++.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~v 34 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE-GHEVVV 34 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC-CCCceE
Confidence 3468999999999999999999888 355444
No 265
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.15 E-value=2.3 Score=34.86 Aligned_cols=28 Identities=21% Similarity=0.577 Sum_probs=24.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
-++|+|+|+|.+|+.+.+.|.+.. .++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G-~~Vv 55 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG-AKLI 55 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEE
Confidence 369999999999999999999874 6766
No 266
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=82.02 E-value=2 Score=38.99 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=23.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++.+.|... .+++..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~-G~~V~~ 144 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL-GWKVLV 144 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE
Confidence 6899999999999999999876 466543
No 267
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=82.00 E-value=2 Score=40.48 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
+||||+|+|.+|..++..|+.+. +++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G-~~V~ 31 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG-IDVA 31 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEE
Confidence 58999999999999999999884 6653
No 268
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=81.93 E-value=2 Score=38.51 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.1
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC--CCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~--p~~~v~~ 32 (254)
|++++|.|||+|.+|..+.-.|.++ ..+++.-
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v 34 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVAL 34 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEE
Confidence 8889999999999999999998876 2355433
No 269
>PRK14031 glutamate dehydrogenase; Provisional
Probab=81.86 E-value=6.8 Score=36.34 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=53.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeE---E--------ECCE--------E
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTL---L--------FGEK--------P 64 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l---~--------~~~~--------~ 64 (254)
.||+|.|+|.+|...++.|.+. ...++.+.... | .+..+.|-.+ . .++. .
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~-----G-----~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~g 297 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSD-----G-----YIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYG 297 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCC-----C-----eEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcC
Confidence 6999999999999999999876 47887765311 1 1111111000 0 0010 0
Q ss_pred EEEeecCCCCCCCcccCCCcEEEEecCCc-cCHHHHHHHHHCCCC
Q 025368 65 VTVFGVRNPEEIPWAETGAEYVVESTGVF-TDKDKAAAHLKGGAK 108 (254)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~Dvv~~a~~~~-~s~~~~~~~~~~G~~ 108 (254)
... .+.+++ |. .+||+.|=|+-.. .+.+.++.+...||+
T Consensus 298 a~~---i~~d~~-~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~ 337 (444)
T PRK14031 298 CKY---VEGARP-WG-EKGDIALPSATQNELNGDDARQLVANGVI 337 (444)
T ss_pred CEE---cCCccc-cc-CCCcEEeecccccccCHHHHHHHHhcCCe
Confidence 111 123333 43 5799998776654 688888888888883
No 270
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=81.84 E-value=7 Score=34.31 Aligned_cols=88 Identities=14% Similarity=0.085 Sum_probs=58.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEE-eeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVA-TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~-~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
.||-|.|. |..|....+.+.+.+ -++++ +... + | +..+ .| ++++. +.++++-. -
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~yg-t~~~~gV~p~-~----~-----------~~~i--~G--~~~y~--sv~dlp~~-~ 68 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEYG-TKMVGGVTPK-K----G-----------GTEH--LG--LPVFN--TVAEAKAE-T 68 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHhC-CcEEEEECCC-C----C-----------CceE--cC--eeccC--CHHHHhhc-c
Confidence 59999999 999999999888775 34433 3211 0 0 0011 12 34442 33344210 1
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP 115 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~ 115 (254)
++|+++.+.|.....+.++++.++|+|.+|| +++
T Consensus 69 ~~DlAvI~vPa~~v~~al~e~~~~Gvk~~vIisaGf 104 (300)
T PLN00125 69 KANASVIYVPPPFAAAAILEAMEAELDLVVCITEGI 104 (300)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 3799999999999999999999999997776 555
No 271
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=81.70 E-value=2.2 Score=37.94 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=22.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+++||+|.|.||+++.|.+..- .+++.+
T Consensus 147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y 174 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGF-GMKVLY 174 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcC-CCEEEE
Confidence 6999999999999999998844 355544
No 272
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=81.70 E-value=1.4 Score=37.48 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.7
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
|..++|+++|+|.+|++|+..+...
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~ 25 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSC 25 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHH
Confidence 6778999999999999999887643
No 273
>PLN03139 formate dehydrogenase; Provisional
Probab=81.68 E-value=2 Score=39.12 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=23.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++|||+|+|.+|+.+++.|... ++++.+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~ 227 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLY 227 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEE
Confidence 5899999999999999999865 466543
No 274
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=81.56 E-value=2.2 Score=41.66 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
++||.|.|+ |++|+.|++.|.++...++..+.
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~ 347 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD 347 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEe
Confidence 469999999 99999999999976457777653
No 275
>PRK09126 hypothetical protein; Provisional
Probab=81.36 E-value=2.2 Score=38.38 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=26.2
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
||+.+|.|||+|..|..+...|.++ .+++.-
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v 31 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGS-GLKVTL 31 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhC-CCcEEE
Confidence 7889999999999999999999876 466543
No 276
>PRK07340 ornithine cyclodeaminase; Validated
Probab=81.31 E-value=1.1 Score=39.27 Aligned_cols=33 Identities=15% Similarity=-0.061 Sum_probs=25.5
Q ss_pred cEEEEEccCHHHHHHHHHHHc-CCCceeEEeeeee
Q 025368 4 VKIGINGFGRIGRLVARVILQ-RDDVELVATYMFK 37 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~~~~~~ 37 (254)
.+++|+|+|..|+..++.+.. ++ ++-+.++.+.
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~-~~~v~v~~r~ 159 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLP-VRRVWVRGRT 159 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC-CCEEEEEcCC
Confidence 589999999999999999875 44 5555565543
No 277
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=81.18 E-value=2.2 Score=37.27 Aligned_cols=27 Identities=30% Similarity=0.657 Sum_probs=23.1
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
||||+|.|.+|..+.+.|.++ .+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~ 28 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVG 28 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEE
Confidence 899999999999999999887 466643
No 278
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=81.16 E-value=1.3 Score=38.94 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=52.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..|+.-++++..-..++=+.++.+..+. .-+|. ..+. . .+ +..+.+. .++++. ..++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~-a~~f~-~~~~--~--~~---~~~v~~~--~~~~ea---v~~a 183 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDH-ARAFA-ERFS--K--EF---GVDIRPV--DNAEAA---LRDA 183 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHH-HHHH--H--hc---CCcEEEe--CCHHHH---HhcC
Confidence 5899999999999999988876556655665543211 01111 0000 0 01 1123332 344443 3689
Q ss_pred cEEEEecCCccCHHHHHHHHHCCCCeEEecCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~ 115 (254)
|+|+.||++..-. .-...++.|.-+.-|.++
T Consensus 184 DIV~taT~s~~P~-~~~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 184 DTITSITNSDTPI-FNRKYLGDEYHVNLAGSN 214 (301)
T ss_pred CEEEEecCCCCcE-ecHHHcCCCceEEecCCC
Confidence 9999999975321 112345678732223444
No 279
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.15 E-value=2.5 Score=37.10 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
+||+|+|+|++|..++..++.+...++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~V 28 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADL 28 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeE
Confidence 499999999999999999988643343
No 280
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=80.86 E-value=1.6 Score=41.37 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=55.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEE--ECCEEEEEee--cCCCCCCCc
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLL--FGEKPVTVFG--VRNPEEIPW 78 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~--~~~~~~~~~~--~~~~~~~~~ 78 (254)
++|-|-|+ |.+|.++++.+++.. -+ .+..+.++. +.++ .+.. ++. +....+..+- -.|.+.+.-
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~-p~--~i~l~~~~E-~~~~---~i~~----el~~~~~~~~~~~~igdVrD~~~~~~ 319 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFN-PK--EIILFSRDE-YKLY---LIDM----ELREKFPELKLRFYIGDVRDRDRVER 319 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcC-CC--EEEEecCch-HHHH---HHHH----HHHhhCCCcceEEEecccccHHHHHH
Confidence 68999999 999999999888762 22 223332221 1110 0100 000 0001111111 022222211
Q ss_pred ccC--CCcEEEEecCCc------------------cCHHHHHHHHHCCCCeEEe-cCCC
Q 025368 79 AET--GAEYVVESTGVF------------------TDKDKAAAHLKGGAKKVII-SAPS 116 (254)
Q Consensus 79 ~~~--~~Dvv~~a~~~~------------------~s~~~~~~~~~~G~~~~vi-S~~~ 116 (254)
... ++|+||.|+... -+...++.+.+.|++.+|. |.|.
T Consensus 320 ~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK 378 (588)
T COG1086 320 AMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK 378 (588)
T ss_pred HHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc
Confidence 123 499999998763 2344567888999988885 9984
No 281
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.78 E-value=2.5 Score=36.59 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.||+|+|+|.+|..+...|.++. +++..
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~ 29 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTL 29 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC-CcEEE
Confidence 48999999999999999998773 55543
No 282
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.63 E-value=2.4 Score=38.90 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++++.+... ++++.+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f-Gm~V~~ 179 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL-GMRVYF 179 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE
Confidence 5899999999999999999866 466644
No 283
>PRK08223 hypothetical protein; Validated
Probab=80.45 E-value=1.3 Score=38.63 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=20.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
..||.|+|+|-+|.+++..|....
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aG 50 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLG 50 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhC
Confidence 359999999999999999888653
No 284
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=80.32 E-value=2.4 Score=36.84 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCC
Q 025368 5 KIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
||-|.|+ |++|+.|++.|.++.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g 24 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG 24 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC
Confidence 8999999 999999999998775
No 285
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=80.11 E-value=2 Score=36.16 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCCCeEEec
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS 113 (254)
.++|+|+.|+|+....++..+++++|+.++++|
T Consensus 36 ~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s 68 (229)
T TIGR03855 36 EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMS 68 (229)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 469999999999999999999999998755554
No 286
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=79.97 E-value=12 Score=31.37 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=48.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee-cCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (254)
.+|-|+|+|.++..=++.|++.. ..+.-+.. .-. . ++. .+...+ .+.... ..+++++ .+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap-~i~---~-----el~-----~l~~~~-~i~~~~r~~~~~dl----~g 85 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKG-CYVYILSK-KFS---K-----EFL-----DLKKYG-NLKLIKGNYDKEFI----KD 85 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CEEEEEcC-CCC---H-----HHH-----HHHhCC-CEEEEeCCCChHHh----CC
Confidence 58999999999999888888764 44433321 000 0 000 000011 122222 1233333 67
Q ss_pred CcEEEEecCCcc-CHHHHHHHHHCCCCeEEecCCC
Q 025368 83 AEYVVESTGVFT-DKDKAAAHLKGGAKKVIISAPS 116 (254)
Q Consensus 83 ~Dvv~~a~~~~~-s~~~~~~~~~~G~~~~viS~~~ 116 (254)
+++||.||+... ..+....+.+.|. .+...++
T Consensus 86 ~~LViaATdD~~vN~~I~~~a~~~~~--lvn~vd~ 118 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHCDRLYK--LYIDCSD 118 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHcCC--eEEEcCC
Confidence 999999998643 3444455556676 4444443
No 287
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=79.94 E-value=3 Score=34.16 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=22.2
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 6 IGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.|.|+ |++|..|++.|.+.. .++..+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~ 28 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVL 28 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccc
Confidence 679999 999999999999885 454443
No 288
>PLN02712 arogenate dehydrogenase
Probab=79.94 E-value=2.7 Score=41.09 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=45.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
++||+|+|+|.+|+.+.+.|.++. +++... .+. +.. . . . . .+ | +..+ .+.+++ ...+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~-dr~-~~~--~----~-A--~--~~---G--v~~~--~d~~e~--~~~~ 108 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAH-SRS-DHS--L----A-A--R--SL---G--VSFF--LDPHDL--CERH 108 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC-CEEEEE-eCC-HHH--H----H-H--H--Hc---C--CEEe--CCHHHH--hhcC
Confidence 479999999999999999998874 665442 221 100 0 0 0 0 11 1 1111 233332 0135
Q ss_pred CcEEEEecCCccCHHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAH 102 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~ 102 (254)
+|+||.|+|.....+.++.+
T Consensus 109 aDvViLavP~~~~~~vl~~l 128 (667)
T PLN02712 109 PDVILLCTSIISTENVLKSL 128 (667)
T ss_pred CCEEEEcCCHHHHHHHHHhh
Confidence 89999999987666666554
No 289
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.74 E-value=2.6 Score=36.78 Aligned_cols=26 Identities=38% Similarity=0.724 Sum_probs=22.5
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
||||+|.|.+|..+++.|.+.. +++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g-~~v~ 27 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGG-HEVV 27 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999999998774 6653
No 290
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=79.71 E-value=2.7 Score=38.17 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+++.|.|||+|..|...++.|.+.. +++.-+
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G-~~Vlvl 32 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAG-LDVLVL 32 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcC-CeEEEE
Confidence 67789999999999999999999886 665443
No 291
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.65 E-value=2.7 Score=35.35 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=25.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
++|.|.|+ |.+|+.+++.|.++ ..++..+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~ 31 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAV 31 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC-CCEEEEEE
Confidence 38999999 99999999999999 45665543
No 292
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=79.45 E-value=2.3 Score=37.45 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+..||||+|+|.+|..+...++. ..+++.-
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l 31 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFAL-AGYDVVL 31 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhh-cCCceEE
Confidence 556799999999999999998887 4466654
No 293
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.22 E-value=1.7 Score=38.04 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=18.5
Q ss_pred EEEEccCHHHHHHHHHHHcCC
Q 025368 6 IGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 6 V~IvG~G~~G~~l~~~L~~~p 26 (254)
|+|+|+|++|..+...+..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~ 21 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE 21 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC
Confidence 689999999999999888664
No 294
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=79.14 E-value=8.3 Score=35.36 Aligned_cols=86 Identities=28% Similarity=0.310 Sum_probs=46.2
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEE-ECCEEEEEeecCCCCCCCcccCCC
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLL-FGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
||.|+|.|-+|..++++|.++. .++... |....... ..... .+. ..| +.++...+++.+ .++
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G-~~V~~s-----D~~~~~~~----~~~~~-~~~~~~g--i~~~~g~~~~~~----~~~ 63 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG-AEVTVT-----DLKPNEEL----EPSMG-QLRLNEG--SVLHTGLHLEDL----NNA 63 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC-CEEEEE-----eCCCCccc----hhHHH-HHhhccC--cEEEecCchHHh----ccC
Confidence 5899999999999999999884 565442 11000000 00000 010 012 233222233333 568
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+-..+-..+-....++.+.|+
T Consensus 64 d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 64 DLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCC
Confidence 998876554444455667778887
No 295
>PRK07877 hypothetical protein; Provisional
Probab=79.05 E-value=1.2 Score=43.86 Aligned_cols=29 Identities=21% Similarity=0.054 Sum_probs=22.7
Q ss_pred cCCCcEEEEecCCccCHHHHH-HHHHCCCC
Q 025368 80 ETGAEYVVESTGVFTDKDKAA-AHLKGGAK 108 (254)
Q Consensus 80 ~~~~Dvv~~a~~~~~s~~~~~-~~~~~G~~ 108 (254)
..++|+||+|+....++-.+. .+.+.|++
T Consensus 194 l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP 223 (722)
T PRK07877 194 LDGLDVVVEECDSLDVKVLLREAARARRIP 223 (722)
T ss_pred hcCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 368999999999987776664 56778874
No 296
>PLN02572 UDP-sulfoquinovose synthase
Probab=78.99 E-value=3.1 Score=38.55 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=25.3
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++||-|.|+ |++|+.|++.|.+.. .++..+
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~ 77 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRG-YEVAIV 77 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEE
Confidence 469999999 999999999999874 566554
No 297
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=78.84 E-value=1.5 Score=38.79 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=56.2
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
..+-|.|+ ||+|+-+++.|..+. ... .+..++ + ++.. .+.. .| |.+..++...++..++-..++
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g-~~~-aLAgRs--~--~kl~--~l~~----~L---G~~~~~~p~~~p~~~~~~~~~ 71 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREG-LTA-ALAGRS--S--AKLD--ALRA----SL---GPEAAVFPLGVPAALEAMASR 71 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcC-Cch-hhccCC--H--HHHH--HHHH----hc---CccccccCCCCHHHHHHHHhc
Confidence 57889999 999999999998774 332 333322 1 1110 0000 11 112222221112222111468
Q ss_pred CcEEEEecCCcc--CHHHHHHHHHCCCCeEEecCC
Q 025368 83 AEYVVESTGVFT--DKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 83 ~Dvv~~a~~~~~--s~~~~~~~~~~G~~~~viS~~ 115 (254)
+++|+.|.+++. ...+++.++.+|..=.+||+-
T Consensus 72 ~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 72 TQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred ceEEEeccccccccccHHHHHHHHhCCCeeecccc
Confidence 999999999963 556778888899876667654
No 298
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.53 E-value=9 Score=33.37 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=21.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|.|+|. +.+|+-|..+|.+. +..+.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~-~atVt 186 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA-GATVT 186 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC-CCEEE
Confidence 58999999 77799999998866 34443
No 299
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.44 E-value=3.6 Score=36.19 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCC-CceeEE
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRD-DVELVA 32 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p-~~~v~~ 32 (254)
+.++|.|.|+ |.+|+.|++.|+++. ..++..
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~ 35 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIII 35 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4478999999 999999999998773 245443
No 300
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.35 E-value=3.7 Score=33.78 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|.|.|+ |.+|+.+++.|.++ ..++..+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~ 36 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAIT 36 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEe
Confidence 58999999 99999999999987 4665444
No 301
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=78.20 E-value=5.1 Score=34.90 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=21.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|.|+|+|.+|...+.++.... ...+.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G-~~~v~ 173 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAG-GSPPA 173 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC-CceEE
Confidence 37899999999999998777664 55433
No 302
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.16 E-value=3.6 Score=36.51 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
..||+|+|+ |++|..++..|...+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCc
Confidence 469999999 999999999998865
No 303
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=77.90 E-value=3.2 Score=41.79 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=26.4
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC---CCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR---DDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~---p~~~v~~~ 33 (254)
|+++||.|||+|++|...++.|.++ ++++++-+
T Consensus 1 m~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi 36 (847)
T PRK14989 1 MSKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVF 36 (847)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEE
Confidence 7778999999999999999888653 35666554
No 304
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=77.81 E-value=2.9 Score=38.55 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+|||+|+|.||+|.-+...|.+. +++..+
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~~--~~V~g~ 34 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGKS--RQVVGF 34 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhcC--CEEEEE
Confidence 47999999999999999997763 777664
No 305
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=77.67 E-value=3.4 Score=38.13 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=24.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+.+|.|+|+|.+|.+++..|+++. +++.-+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G-l~V~Li 31 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG-VPVELY 31 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 469999999999999999998874 554443
No 306
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=77.66 E-value=2.6 Score=36.57 Aligned_cols=28 Identities=36% Similarity=0.549 Sum_probs=23.9
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
||.|.|+ |..|.+|.+.|. +.+++..+.
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~ 30 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATD 30 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEecc
Confidence 5999999 999999999987 667777653
No 307
>PRK08163 salicylate hydroxylase; Provisional
Probab=77.51 E-value=3.7 Score=36.92 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=23.9
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.++|.|||+|.+|..+...|.++ .+++.-
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v 32 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKL 32 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEE
Confidence 46999999999999999998877 366543
No 308
>PLN02306 hydroxypyruvate reductase
Probab=77.47 E-value=3.6 Score=37.48 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=22.7
Q ss_pred cEEEEEccCHHHHHHHHHHH-cCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVIL-QRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~-~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++++.+. .. .+++.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~ 194 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY 194 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEE
Confidence 68999999999999999975 44 466544
No 309
>PRK06199 ornithine cyclodeaminase; Validated
Probab=77.44 E-value=2.1 Score=38.91 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=27.9
Q ss_pred cEEEEEccCHHHHHHHHHHHc-CCCceeEEeeeee
Q 025368 4 VKIGINGFGRIGRLVARVILQ-RDDVELVATYMFK 37 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~~~~~~ 37 (254)
.+++|+|+|..++.-++.+.. +|+++-+.++.+.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~ 190 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG 190 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC
Confidence 589999999999999999886 5667767776654
No 310
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.44 E-value=3.4 Score=36.01 Aligned_cols=26 Identities=31% Similarity=0.602 Sum_probs=22.8
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
||||+|.|.+|..+.+.|.++. +++.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~ 27 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDG-HEVV 27 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCC-CEEE
Confidence 8999999999999999998874 6654
No 311
>PRK08013 oxidoreductase; Provisional
Probab=77.42 E-value=3.5 Score=37.34 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+..+|.|+|+|.+|..+...|.++ .+++.-+
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~-G~~v~vi 32 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGS-GLRVAVL 32 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhC-CCEEEEE
Confidence 7678999999999999999888776 4665443
No 312
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=77.40 E-value=3.7 Score=36.29 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
+||.|.|+ |++|+.|++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 59999999 999999999999874
No 313
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.32 E-value=3.3 Score=37.90 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=26.5
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+..|.|+|+ |++|+.+++.|.+.. |.+..+
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~ 109 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRG-FSVRAL 109 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCC-Ceeeee
Confidence 3579999999 999999999999996 776554
No 314
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=77.23 E-value=3.7 Score=35.99 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|||.|.|+ |++|..|++.|.+.. .++..+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC-CeEEEE
Confidence 38999999 999999999998774 566554
No 315
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=77.19 E-value=3.1 Score=37.86 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=23.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
+||+|||+|..|..+...|.++..++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~ 28 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQ 28 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEE
Confidence 4899999999999999999987644543
No 316
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=77.12 E-value=2.9 Score=36.23 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.5
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
||+|+|+|.+|..+.+.|.++. +++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~ 26 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG-YQLH 26 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC-CeEE
Confidence 6999999999999999998874 6654
No 317
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=76.95 E-value=10 Score=33.52 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=58.9
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEE-eeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVA-TYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~-~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
.||-|-|. |.-|.--.+...+.. -++++ +.-.+ .|+.+...| +++|. +.++++- ..
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~yg-t~iv~GV~Pgk----------------gg~~v~~~G--vpvy~--sv~ea~~-~~ 87 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEYG-TKMVGGVNPKK----------------AGTTHLKHG--LPVFA--TVKEAKK-AT 87 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHhC-CcEEEEECCCC----------------CCceEecCC--ccccC--CHHHHhc-cc
Confidence 58999999 999999998888774 34444 32110 111111002 45542 2333321 12
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCCCeEEe--cCC
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGAKKVII--SAP 115 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi--S~~ 115 (254)
++|+++.+.|.....+.+.++.++|++.+|+ +++
T Consensus 88 ~~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGf 123 (317)
T PTZ00187 88 GADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGI 123 (317)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4899999999999999999999999998776 444
No 318
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=76.87 E-value=4.4 Score=35.94 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=25.3
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+||.|.|+ |++|+.+++.|.++. .++..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~ 40 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG-YTVHAT 40 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 369999999 999999999999885 566553
No 319
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=76.83 E-value=3.8 Score=36.50 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=26.0
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|++..|.|||+|.+|..++..|.++. ++++-
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g-~~V~l 31 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRG-LRVLG 31 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCC-CeEEE
Confidence 67789999999999999999999884 56543
No 320
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=76.65 E-value=4.3 Score=35.96 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+.+||-|.|+ |++|..+++.|.+.. .++..+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~ 34 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGY 34 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCC-CEEEEE
Confidence 3479999999 999999999999874 566554
No 321
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.46 E-value=4.3 Score=38.28 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=26.7
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEEeee
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVATYM 35 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~ 35 (254)
.+.+|.|||||..|...+|.|.+. .+++.-+-+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEA 46 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEA 46 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc-CCceEEEec
Confidence 457999999999999999999987 377555433
No 322
>PLN02686 cinnamoyl-CoA reductase
Probab=76.22 E-value=4.5 Score=36.32 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=25.7
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|++++|-|.|+ |++|+.|++.|.++. .++..
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~ 82 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRI 82 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEE
Confidence 34579999999 999999999999874 56654
No 323
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=76.10 E-value=3.3 Score=35.57 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=23.7
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCC-CceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQRD-DVELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p-~~~v~~~ 33 (254)
||.|.|+ |++|+.|++.|+++. +.++..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence 5899999 999999999988763 4676554
No 324
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.05 E-value=3.5 Score=34.25 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+..++.|.|+ |.+|+++++.|.++. .++..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g-~~v~~ 33 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEG-YDIAV 33 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEE
Confidence 44578999999 999999999999885 55543
No 325
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.99 E-value=7.3 Score=36.56 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
..+|.|+|.|..|..++++|.++. .++..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G-~~v~~ 35 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG-ARLRV 35 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC-CEEEE
Confidence 358999999999999999999885 56544
No 326
>PRK06184 hypothetical protein; Provisional
Probab=75.93 E-value=4 Score=38.26 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.7
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.+.+|.|||+|.+|..+...|.++. +++.-+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~G-i~v~vi 32 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRG-VSFRLI 32 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEE
Confidence 77889999999999999999998874 665443
No 327
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=75.85 E-value=4.5 Score=37.07 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.6
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.+.||.|+|+|+.|..+++.|.. ++++++-+
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI 39 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVI 39 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEE
Confidence 456799999999999999988753 34665554
No 328
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=75.78 E-value=3 Score=36.23 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
.+|.|+|+|-+|+.++..|....
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G 150 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLG 150 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC
Confidence 48999999889999999998764
No 329
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=75.61 E-value=3.7 Score=35.76 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
||+++|.|.+|..+.+.|.+.. +++.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~ 27 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG-HQLH 27 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC-CeEE
Confidence 8999999999999999998874 5553
No 330
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.55 E-value=17 Score=33.40 Aligned_cols=84 Identities=24% Similarity=0.198 Sum_probs=46.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec-CCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-RNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (254)
.+|.|+|.|..|+..+++|.++. .++... |...... . .. .+. .| +.++.. .+++.+ .+
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G-~~v~~~-----D~~~~~~-----~--~~-~l~-~g--~~~~~~~~~~~~~----~~ 65 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG-VTPRVI-----DTRITPP-----G--LD-KLP-EN--VERHTGSLNDEWL----LA 65 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CeEEEE-----cCCCCch-----h--HH-HHh-cC--CEEEeCCCCHHHh----cC
Confidence 48999999999999999888774 565332 2110000 0 00 111 12 222221 122222 46
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAK 108 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~ 108 (254)
.|+|+-..+-......+.++.+.|++
T Consensus 66 ~d~vv~spgi~~~~~~~~~a~~~g~~ 91 (438)
T PRK03806 66 ADLIVASPGIALAHPSLSAAADAGIE 91 (438)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCe
Confidence 78877654444455677788889983
No 331
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=75.52 E-value=4.4 Score=36.42 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=25.2
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC-CCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~~ 33 (254)
|+ .+|.|+|+|+.|..+++.|.++ ++.+++-+
T Consensus 1 m~-~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi 33 (377)
T PRK04965 1 MS-NGIVIIGSGFAARQLVKNIRKQDAHIPITLI 33 (377)
T ss_pred CC-CCEEEECCcHHHHHHHHHHHhhCcCCCEEEE
Confidence 53 6999999999999999998763 55665544
No 332
>PRK12827 short chain dehydrogenase; Provisional
Probab=75.52 E-value=5.1 Score=33.08 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=25.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+++.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g-~~v~~~ 36 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG-ADVIVL 36 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEE
Confidence 468999999 999999999999885 565443
No 333
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=75.38 E-value=4.4 Score=36.45 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.9
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.+.+|.|+|+|.+|..+...|.+.. +++.-+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G-~~v~l~ 32 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQG-RSVAVI 32 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCC-CcEEEE
Confidence 66679999999999999999888764 555443
No 334
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=75.38 E-value=3.9 Score=34.86 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.0
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||.|.|+ |++|+.+++.|.++. .++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~ 29 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVAL 29 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEe
Confidence 6899999 999999999998874 565443
No 335
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=75.30 E-value=5 Score=33.20 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.5
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++|.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~ 36 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG-AEVIVV 36 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 368999999 999999999999884 565443
No 336
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.28 E-value=17 Score=33.48 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=48.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCC-ceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec-CCCCCCCcccC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDD-VELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-RNPEEIPWAET 81 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~-~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~ 81 (254)
.||.|+|.|-.|...++.|+.+.. +++... |...... . .. .|.- | +.++.. .+++.+ .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~-----D~~~~~~-----~--~~-~l~~-g--~~~~~g~~~~~~~----~ 67 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVI-----DTRETPP-----G--QE-QLPE-D--VELHSGGWNLEWL----L 67 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEE-----eCCCCch-----h--HH-Hhhc-C--CEEEeCCCChHHh----c
Confidence 589999999999999999998744 555432 2100000 0 00 1211 2 333222 233333 4
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
++|+|+-..+-..+...+.++.++|+
T Consensus 68 ~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 68 EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 68988876555445556677788887
No 337
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=75.19 E-value=4.8 Score=38.30 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=21.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++||+|||+|..|...++.|++. .++++..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~-g~~~~~f 30 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEE-GLEVTCF 30 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHT-T-EEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCeEE
Confidence 36999999999999999999887 4877653
No 338
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=75.12 E-value=4.1 Score=39.69 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=25.5
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcC-CCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQR-DDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~-p~~~v~~~ 33 (254)
.+||.|.|+ |++|+.|++.|.++ ++.++..+
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~ 38 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVL 38 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence 469999999 99999999999876 45676554
No 339
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.06 E-value=9 Score=33.78 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
-+|.|+|+|.+|...+.++....
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G 193 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG 193 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 37999999999999998877663
No 340
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=74.98 E-value=4.3 Score=36.78 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=24.5
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|...+|.|+|+|.+|..+.-.|..+ .+++.-
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~v 32 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKES-DLRIAV 32 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhC-CCEEEE
Confidence 3356999999999999999888776 466543
No 341
>PRK11445 putative oxidoreductase; Provisional
Probab=74.94 E-value=4.2 Score=36.18 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=23.9
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+.|.|+|+|.+|..+...|.++ +++.-+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~--~~V~li 29 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK--MKVIAI 29 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc--CCEEEE
Confidence 36999999999999999998876 565444
No 342
>PRK07023 short chain dehydrogenase; Provisional
Probab=74.94 E-value=4.9 Score=33.32 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=24.5
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++-|.|+ |.+|+.+++.|.++. .++..+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G-~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG-IAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC-CEEEEE
Confidence 49999999 999999999999874 665543
No 343
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=74.86 E-value=6.8 Score=30.30 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=43.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
.+|.|+|- .-+|+.|..+|.++ +..+....... .+.++. ..+
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~t---------------------------------~~l~~~---v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKT---------------------------------IQLQSK---VHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCCC---------------------------------cCHHHH---Hhh
Confidence 68999999 99999999998866 34433321100 011111 257
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
+|+|+.|++.. .-.-...++.|. +|+
T Consensus 72 ADIVvsAtg~~--~~i~~~~ikpGa--~Vi 97 (140)
T cd05212 72 ADVVVVGSPKP--EKVPTEWIKPGA--TVI 97 (140)
T ss_pred CCEEEEecCCC--CccCHHHcCCCC--EEE
Confidence 99999999975 223345677888 666
No 344
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.81 E-value=5.6 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=25.5
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++.++.|.|+ |.+|.++++.|+++. .++..+
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g-~~v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEG-AKVVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 3468999999 999999999998774 666554
No 345
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=74.77 E-value=4.5 Score=35.08 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++|.|.|+ |++|+.|++.|+++. .++..+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~ 34 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG-YTVKAT 34 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999 999999999999885 566543
No 346
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=74.71 E-value=4.4 Score=35.76 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCC
Q 025368 5 KIGINGF-GRIGRLVARVILQRDD 27 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~ 27 (254)
||.|.|+ |++|..|++.|+++..
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~ 25 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCC
Confidence 8999999 9999999999998753
No 347
>PRK06180 short chain dehydrogenase; Provisional
Probab=74.69 E-value=5.9 Score=33.70 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=24.9
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+.++-|.|+ |.+|+.+++.|.++. .++..+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G-~~V~~~ 34 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAG-HRVVGT 34 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCc-CEEEEE
Confidence 467999999 999999999998874 666554
No 348
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=74.56 E-value=4.5 Score=34.75 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.3
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEee
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
+|.|.|+ |++|+.|++.|.+. ..++..+.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~ 31 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLD 31 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC-CCeEEEEe
Confidence 5999999 99999999999987 46666654
No 349
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=74.30 E-value=5.6 Score=35.85 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
.+.+|.|+|. |+.|+.|++.|.+..
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~ 28 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE 28 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc
Confidence 4679999999 999999999999885
No 350
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=74.21 E-value=4.6 Score=36.62 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=25.6
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC-CCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~ 32 (254)
|.+.||.|||+|+.|.+.++.|.++ ++.++.-
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~l 33 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHL 33 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEE
Confidence 7778999999999999999999865 3344443
No 351
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=74.11 E-value=4.9 Score=37.05 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=23.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcC-CCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQR-DDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~~ 33 (254)
+||.|+|+|..|...++.|.++ ++.++.-+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li 32 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIF 32 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEE
Confidence 5999999999999999988754 45665443
No 352
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.02 E-value=5.3 Score=35.01 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|+|+|- |.+|+-+.+.|.+.. +++.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g-~tVt 186 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAAN-ATVT 186 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCC-CEEE
Confidence 68999998 999999999998763 5543
No 353
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=73.98 E-value=9.6 Score=35.37 Aligned_cols=83 Identities=25% Similarity=0.282 Sum_probs=47.3
Q ss_pred cEEEEEccCHHHHH-HHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRL-VARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~-l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+||.|+|.|-.|.. ++|+|.++. .++... |....... . .+.-.| +.++...+++.+ .+
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G-~~V~~~-----D~~~~~~~-~--------~l~~~g--i~~~~~~~~~~~----~~ 66 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG-YKVSGS-----DLKESAVT-Q--------RLLELG--AIIFIGHDAENI----KD 66 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC-CeEEEE-----CCCCChHH-H--------HHHHCC--CEEeCCCCHHHC----CC
Confidence 58999999999999 799999884 665432 21000000 0 110011 223222233333 46
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCC
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
+|+|+-+.+-......+..+.+.|+
T Consensus 67 ~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 67 ADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCC
Confidence 8999876554445556677788887
No 354
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=73.81 E-value=5 Score=35.18 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEccCHHHHHHHHHHHcCCCc
Q 025368 8 INGFGRIGRLVARVILQRDDV 28 (254)
Q Consensus 8 IvG~G~~G~~l~~~L~~~p~~ 28 (254)
|+|+|.+|..++-.|..++-+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~ 21 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA 21 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC
Confidence 689999999999999887644
No 355
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=73.79 E-value=5.2 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=23.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|.|||+|.+|..++..|++. ..++.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~v 29 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTV 29 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEE
Confidence 5999999999999999999876 355433
No 356
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.73 E-value=11 Score=35.39 Aligned_cols=85 Identities=18% Similarity=0.143 Sum_probs=50.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec-CCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-RNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (254)
.||.|+|+|..|...+++|.... .++.. +... . ... .... .. | +.++.. ..++.+ .+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~~--~--~~~--~~l~-~~-------g--~~~~~~~~~~~~l----~~ 70 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDDD--P--DAL--RPHA-ER-------G--VATVSTSDAVQQI----AD 70 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcCC--H--HHH--HHHH-hC-------C--CEEEcCcchHhHh----hc
Confidence 58999999999999999888774 55543 2111 0 000 0000 01 1 122111 112222 46
Q ss_pred CcEEEEecCCccCHHHHHHHHHCCCCeEEe
Q 025368 83 AEYVVESTGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
+|+||.+.+-..+...+.++.++|+ .|+
T Consensus 71 ~D~VV~SpGi~~~~p~~~~a~~~gi--~v~ 98 (488)
T PRK03369 71 YALVVTSPGFRPTAPVLAAAAAAGV--PIW 98 (488)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCC--cEe
Confidence 8999998876666667778888888 444
No 357
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=73.73 E-value=4.9 Score=38.13 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++|||+|+|.+|+++.+.|... ++++.+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~ 168 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF-GMKVIA 168 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEE
Confidence 5899999999999999999876 466544
No 358
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.58 E-value=6.5 Score=32.80 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=24.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+++-|.|+ |.+|..+++.|+++. .++..
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G-~~v~~ 36 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG-AAVAI 36 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEE
Confidence 468999999 999999999999885 46543
No 359
>PRK06182 short chain dehydrogenase; Validated
Probab=73.29 E-value=6.7 Score=33.21 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|.+.++.|.|+ |.+|+++++.|.++. .++..+
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G-~~V~~~ 33 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQG-YTVYGA 33 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence 66679999999 999999999998874 565543
No 360
>PRK06847 hypothetical protein; Provisional
Probab=73.21 E-value=5.6 Score=35.42 Aligned_cols=31 Identities=23% Similarity=0.121 Sum_probs=24.5
Q ss_pred CC-CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MG-KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~-~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|. +.+|.|||+|..|..+...|.++ .+++.-
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v 32 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRA-GIAVDL 32 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhC-CCCEEE
Confidence 54 46899999999999999998876 355433
No 361
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=73.20 E-value=4.3 Score=36.32 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+|.|+|+|.+|...+.++....--++..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~ 199 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV 199 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe
Confidence 79999999999888776666653444443
No 362
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=73.20 E-value=1.2 Score=39.40 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=41.4
Q ss_pred cEEEEEccCHHHHHHHHHHHc-CCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGFGRIGRLVARVILQ-RDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
.+++|+|+|..|+.-++.+.. +| ++-+.++.+..+. ..+|. ..+. . + +..+... .++++. ..+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~-~~~~~-~~~~-----~--~-~~~v~~~--~~~~~a---v~~ 192 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRSPER-AEAFA-ARLR-----D--L-GVPVVAV--DSAEEA---VRG 192 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SSHHH-HHHHH-HHHH-----C--C-CTCEEEE--SSHHHH---HTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccChhH-HHHHH-Hhhc-----c--c-cccceec--cchhhh---ccc
Confidence 589999999999999998876 45 7666676654221 11221 1111 1 1 2123322 344333 468
Q ss_pred CcEEEEecCCccC-HHHHHHHHHCCC
Q 025368 83 AEYVVESTGVFTD-KDKAAAHLKGGA 107 (254)
Q Consensus 83 ~Dvv~~a~~~~~s-~~~~~~~~~~G~ 107 (254)
+|+|+.||++... .-.-...++.|.
T Consensus 193 aDii~taT~s~~~~P~~~~~~l~~g~ 218 (313)
T PF02423_consen 193 ADIIVTATPSTTPAPVFDAEWLKPGT 218 (313)
T ss_dssp SSEEEE----SSEEESB-GGGS-TT-
T ss_pred CCEEEEccCCCCCCccccHHHcCCCc
Confidence 9999999998651 112223456787
No 363
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.19 E-value=6.5 Score=28.60 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=22.0
Q ss_pred EEEEccCHHHHHHHHHHHcCCCceeEEee
Q 025368 6 IGINGFGRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 6 V~IvG~G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
|-|+|+|.+|+++++.|.+. ..+++.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid 28 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVID 28 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEE
Confidence 56999999999999999984 46666654
No 364
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=73.14 E-value=4.4 Score=30.69 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
.||.|+|+|-+|.++++.|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~G 25 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSG 25 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHT
T ss_pred CEEEEECcCHHHHHHHHHHHHhC
Confidence 59999999999999999998764
No 365
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=72.92 E-value=4.9 Score=36.58 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=24.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|||.|+|.||+|....-.|+++. -+++.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G-HeVv~v 29 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG-HEVVCV 29 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC-CeEEEE
Confidence 49999999999999988888774 566664
No 366
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.90 E-value=6.7 Score=33.29 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=26.5
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+...+-|.|+ |.+|+.+++.|.++. ..+..+
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~ 33 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKG-YLVIAT 33 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC-CEEEEE
Confidence 66677899999 999999999999884 666554
No 367
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=72.89 E-value=5.1 Score=38.05 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|||+|+|.+|+++.+.|... .+++.+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~~ 166 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVLA 166 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEE
Confidence 5899999999999999999876 366544
No 368
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=72.53 E-value=5.5 Score=37.14 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
..+|+|||+|..|...++.|.+.. ++++-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G-~~v~v 38 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG-HTVVV 38 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC-CeEEE
Confidence 479999999999999999988774 55443
No 369
>PLN02650 dihydroflavonol-4-reductase
Probab=72.52 E-value=6 Score=35.00 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.4
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++|.|.|+ |++|+.|++.|.++. .++..+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~ 35 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERG-YTVRAT 35 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEE
Confidence 479999999 999999999999874 566554
No 370
>PRK14852 hypothetical protein; Provisional
Probab=72.52 E-value=3.8 Score=41.58 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=20.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
..||+|+|+|-+|..++..|....
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraG 355 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTG 355 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcC
Confidence 369999999999999999888663
No 371
>PRK14030 glutamate dehydrogenase; Provisional
Probab=72.38 E-value=17 Score=33.70 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=54.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCe----------------eE------EEC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDK----------------TL------LFG 61 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~----------------~l------~~~ 61 (254)
.||+|=|+|.+|..+++.|.+. ...++.+.... | .+..+.|- .+ .+.
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~-----G-----~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ 297 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATEL-GAKVVTISGPD-----G-----YIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP 297 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCC-----c-----eEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC
Confidence 6999999999999999999877 57887764221 1 11111110 00 011
Q ss_pred CEEEEEeecCCCCCCCcccCCCcEEEEecCC-ccCHHHHHHHHHCCCCeEEe
Q 025368 62 EKPVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~Dvv~~a~~~-~~s~~~~~~~~~~G~~~~vi 112 (254)
+ ... .+.+++ |. .+||+.+=|+-. ..+.+.++.+.+.+|| +|+
T Consensus 298 g--a~~---i~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~ 341 (445)
T PRK14030 298 G--STF---FAGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CVA 341 (445)
T ss_pred C--CEE---cCCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence 1 111 123344 53 479998877654 5678888888888885 444
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.35 E-value=5.4 Score=36.67 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.9
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+|.|+|+|++|+.+++.|.+. +.++..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vi 29 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVI 29 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEE
Confidence 899999999999999999876 4676554
No 373
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.29 E-value=15 Score=34.30 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=47.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeec-CCCCCCCcccC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGV-RNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~ 81 (254)
+.||.|+|+|-+|+.++++|.+.. .++... |...... . . .+.-.| +.++.. .+++.+ .
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G-~~V~~~-----D~~~~~~-----~--~--~l~~~g--i~~~~~~~~~~~~----~ 73 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELG-CDVVVA-----DDNETAR-----H--K--LIEVTG--VADISTAEASDQL----D 73 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCC-CEEEEE-----CCChHHH-----H--H--HHHhcC--cEEEeCCCchhHh----c
Confidence 368999999999999999998775 454332 2100000 0 0 000012 233221 122223 4
Q ss_pred CCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 82 GAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 82 ~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
++|+|+-+.+-..+.....++.+.|+
T Consensus 74 ~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 74 SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 68999876554445556667778887
No 374
>PRK14982 acyl-ACP reductase; Provisional
Probab=72.29 E-value=6.3 Score=35.23 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
..+|.|+|+ |.+|+++++.|.++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~ 178 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAK 178 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhh
Confidence 468999999 99999999999854
No 375
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=71.96 E-value=8.1 Score=33.06 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeee
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYM 35 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~ 35 (254)
.||+|-|+|.+|+.+++.|.+. ...++++..
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD 69 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLEL-GAKVVTLSD 69 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEC
Confidence 6999999999999999999887 488887753
No 376
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=71.93 E-value=3.5 Score=36.71 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=19.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcC
Q 025368 4 VKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
.+|||+|+|.+|+.+++.|..-
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc
Confidence 6999999999999999988753
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=71.86 E-value=5.6 Score=35.90 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++|.|+|+|.+|..+.-+|.++. ++++-+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~ 31 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG-LDVTLL 31 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC-CcEEEE
Confidence 478999999999999999998886 665443
No 378
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=71.78 E-value=4.2 Score=39.66 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCcee
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v 30 (254)
++|||-|.|+ |++|+.|++.|.+.. .++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v 407 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAY 407 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeE
Confidence 3579999999 999999999998764 454
No 379
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.59 E-value=6.9 Score=32.71 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=25.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..++.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g-~~V~~~ 41 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAG-ARVHVC 41 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 479999999 999999999999885 565443
No 380
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.57 E-value=4.2 Score=35.81 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=46.8
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccc--cceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKH--HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~--~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
||+|+|+|.+|..+...|.+.. .++. ++.+..+. .....+ .....-++..+ . ..+... .+.++.. ..+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~-l~~r~~~~-~~~i~~~~~~~~~~~~~~~--~-~~i~~~--~~~~~~~--~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVN-LWGRNHTT-FESINTKRKNLKYLPTCHL--P-DNISVK--SAIDEVL--SDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEE-EEecCHHH-HHHHHHcCCCcccCCCCcC--C-CCeEEe--CCHHHHH--hCC
Confidence 8999999999999999998763 4543 44432110 000000 00000001000 0 012222 1222110 146
Q ss_pred CcEEEEecCCccCHHHHHHHHH
Q 025368 83 AEYVVESTGVFTDKDKAAAHLK 104 (254)
Q Consensus 83 ~Dvv~~a~~~~~s~~~~~~~~~ 104 (254)
+|++|.|+++....+.++.+..
T Consensus 72 ~Dliiiavks~~~~~~l~~l~~ 93 (326)
T PRK14620 72 ATCIILAVPTQQLRTICQQLQD 93 (326)
T ss_pred CCEEEEEeCHHHHHHHHHHHHH
Confidence 8999999999877777766554
No 381
>PLN02477 glutamate dehydrogenase
Probab=71.42 E-value=6.7 Score=36.01 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=26.7
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEee
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
.||+|.|+|.+|+.++++|.+. ...++++.
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~-GakVVaVs 236 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK-GGKIVAVS 236 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEE
Confidence 6999999999999999999887 48888775
No 382
>PRK07577 short chain dehydrogenase; Provisional
Probab=71.41 E-value=7.9 Score=31.70 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|..+++.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 1 ~~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~ 33 (234)
T PRK07577 1 MSSRTVLVTGATKGIGLALSLRLANLG-HQVIGI 33 (234)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 55578999999 999999999999885 565444
No 383
>PRK14851 hypothetical protein; Provisional
Probab=71.37 E-value=4 Score=40.02 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
..||+|+|+|-+|..++..|....
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~G 66 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTG 66 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhC
Confidence 369999999999999999887653
No 384
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=71.21 E-value=6.2 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=23.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|++|.|+|+|.+|..+...|.++. +++.-
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G-~~v~l 29 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKG-IKTTI 29 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCC-CeEEE
Confidence 369999999999999999988764 55433
No 385
>PLN02583 cinnamoyl-CoA reductase
Probab=71.21 E-value=7.8 Score=33.53 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|.|.|+ |++|+.+++.|+++. .++..+
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~ 36 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG-YTVHAA 36 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEE
Confidence 58999999 999999999999874 676554
No 386
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=71.12 E-value=6 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++|-|.|+ |++|+.|++.|++.. .++..+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~ 30 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGL 30 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 38999999 999999999999874 576654
No 387
>PRK06823 ornithine cyclodeaminase; Validated
Probab=71.07 E-value=3.5 Score=36.46 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=53.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..++.-++.+..-..++-+.++.+..+. .-++. ..+. .. +..+.+. .++++. ..++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~-a~~~~-~~~~-----~~---~~~v~~~--~~~~~a---v~~A 193 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETA-LEEYR-QYAQ-----AL---GFAVNTT--LDAAEV---AHAA 193 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHH-HHHHH-HHHH-----hc---CCcEEEE--CCHHHH---hcCC
Confidence 5899999999999999988876556666666554221 11111 0000 00 1122222 334333 3689
Q ss_pred cEEEEecCCccCHHHHHHHHHCCCCeEEecCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~~~~viS~~ 115 (254)
|+|+.||++..-. .-...++.|.-+.-|+++
T Consensus 194 DIV~taT~s~~P~-~~~~~l~~G~hi~~iGs~ 224 (315)
T PRK06823 194 NLIVTTTPSREPL-LQAEDIQPGTHITAVGAD 224 (315)
T ss_pred CEEEEecCCCCce-eCHHHcCCCcEEEecCCC
Confidence 9999999865321 113456678722223555
No 388
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=71.03 E-value=1.7 Score=38.51 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=57.0
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCccc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 80 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
|... |||+|.|...+-++-+|.+-+ |++.++-.+. ..+.+. .. ......... ...+++ |..
T Consensus 1 m~Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt--~~ea~a--------~a-----a~~~v~~~t-~~~dei-Ll~ 61 (367)
T KOG2742|consen 1 MSPG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRT--KTEAKA--------KA-----AEMNVRKYT-SRLDEI-LLD 61 (367)
T ss_pred CCCc-eeEeccChhHhhhhhhhhhcc-chHhhhhchh--hhHHHH--------hh-----hccchhhcc-ccchhh-hcc
Confidence 6655 999999999999999999888 8877665441 111000 00 001122221 122333 323
Q ss_pred CCCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 81 TGAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 81 ~~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
.++|+|+.+.|+....+...+++..|.
T Consensus 62 ~~vdlv~i~lpp~~~~eI~~kal~~Gk 88 (367)
T KOG2742|consen 62 QDVDLVCISLPPPLHAEIVVKALGIGK 88 (367)
T ss_pred CCcceeEeccCCccceeeeeccccCCc
Confidence 679999999999988888888888886
No 389
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=70.98 E-value=9.8 Score=34.44 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
..||.|+|+|-+|.+++..|....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~G 64 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAG 64 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 369999999999999999998764
No 390
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=70.94 E-value=25 Score=32.79 Aligned_cols=92 Identities=11% Similarity=0.173 Sum_probs=55.1
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCe---eE--------EECCE---------
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDK---TL--------LFGEK--------- 63 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~---~l--------~~~~~--------- 63 (254)
.||+|=|+|.+|..+++.|.+. ...++++.... +.+..+.|- .+ ..++.
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~----------G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~ 306 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSD----------GYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSS 306 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCC----------CcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccC
Confidence 6999999999999999999887 47887765321 111111110 00 00000
Q ss_pred EEEEeecCCCCCCCcccCCCcEEEEecCC-ccCHHHHHHHHHCCCCeEEe
Q 025368 64 PVTVFGVRNPEEIPWAETGAEYVVESTGV-FTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~Dvv~~a~~~-~~s~~~~~~~~~~G~~~~vi 112 (254)
.... .+.+++ |. .+||+.+=|+-. ..+.+.++.+.+.||+ +|+
T Consensus 307 ~a~~---~~~~~~-~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~ 350 (454)
T PTZ00079 307 TAKY---VPGKKP-WE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA 350 (454)
T ss_pred CcEE---eCCcCc-cc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence 0111 123333 64 479999877654 4577888888888995 444
No 391
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=70.84 E-value=4.5 Score=36.78 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=24.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|||+|.||+|.-+.-..+.+ .+++.++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~-G~~ViG~ 38 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA-GFKVIGV 38 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc-CCceEeE
Confidence 7999999999999999887777 4777775
No 392
>PRK05868 hypothetical protein; Validated
Probab=70.75 E-value=6.5 Score=35.35 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=23.1
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|++|.|+|+|.+|..+...|.++ .+++.-
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G~~v~v 29 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-GYSVTM 29 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEE
Confidence 35999999999999999888766 355433
No 393
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=70.71 E-value=9.7 Score=30.18 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=19.9
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~ 31 (254)
++|.|+|. +.+|+-|..+|.++ +..+.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~-~atVt 64 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK-GATVT 64 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT-T-EEE
T ss_pred CEEEEECCcCCCChHHHHHHHhC-CCeEE
Confidence 68999999 88999999998887 34443
No 394
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.62 E-value=8.6 Score=31.58 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.6
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..++-|.|+ |.+|+++++.|.++. .++..+
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G-~~v~~~ 35 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG-ANVVIN 35 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 368999999 999999999999874 565443
No 395
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=70.47 E-value=7.3 Score=34.70 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++.+|.|||+|.+|......|.++. .+++-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G-~~V~v 32 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERG-ADVTV 32 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcC-CEEEE
Confidence 4679999999999999999999885 34433
No 396
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.47 E-value=8.3 Score=31.86 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=24.2
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++.|.|+ |.+|+++++.|.++. .++..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G-~~V~~~ 35 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG-ARVVVT 35 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence 68999999 999999999999884 564443
No 397
>PRK08017 oxidoreductase; Provisional
Probab=70.26 E-value=8.6 Score=31.98 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|.|.|+ |.+|+.+++.|.++. .++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g-~~v~~ 31 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG-YRVLA 31 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEE
Confidence 58999999 999999999999874 56544
No 398
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=69.92 E-value=8.5 Score=31.96 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=24.8
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..+|-|.|+ |.+|.++++.|.++. .++..+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~ 34 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEG-AKVVIA 34 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CeEEEE
Confidence 468999999 999999999999874 565444
No 399
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.71 E-value=14 Score=33.98 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=46.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+|.|+|+|.+|+..++.|.+.. .++...-... .. ... ... .+.-.| +.++...++.++ ...+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G-~~V~~~d~~~-~~--~~~---~~~-----~l~~~g--~~~~~~~~~~~~--~~~~~ 69 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG-ANVTVNDGKP-FS--ENP---EAQ-----ELLEEG--IKVICGSHPLEL--LDEDF 69 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC-CEEEEEcCCC-cc--chh---HHH-----HHHhcC--CEEEeCCCCHHH--hcCcC
Confidence 58999999779999999999875 5654432110 00 000 000 110011 222211222222 01238
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+-+.+-........++.+.|+
T Consensus 70 d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 70 DLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCC
Confidence 999887654445556777788887
No 400
>PRK09897 hypothetical protein; Provisional
Probab=69.53 E-value=4.7 Score=38.34 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC
Q 025368 3 KVKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
|++|+|||+|..|..++..|..+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~ 23 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQ 23 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhc
Confidence 36999999999999999988765
No 401
>PRK07806 short chain dehydrogenase; Provisional
Probab=69.53 E-value=8.8 Score=31.79 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++-|.|+ |.+|+.+++.|.++. .++..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G-~~V~~~ 36 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAG-AHVVVN 36 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCC-CEEEEE
Confidence 68999999 999999999998874 565443
No 402
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=69.45 E-value=7 Score=33.95 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=21.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.+|.|||+|..|..+...|.++. +++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G-~~v~i 29 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG-IDVTI 29 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT-CEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcc-ccccc
Confidence 58999999999999999999884 55433
No 403
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=69.43 E-value=6.8 Score=34.45 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=25.2
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++|-|.|+ |++|..|++.|.++. .++..+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~ 36 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKG-YEVHGI 36 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC-CEEEEE
Confidence 368999999 999999999999874 666554
No 404
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=69.38 E-value=3.5 Score=36.10 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=19.7
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHc
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQ 24 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~ 24 (254)
|+++||+|+|+|-+|-.-+-.+++
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~ 24 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLSTALCILE 24 (342)
T ss_pred CCCccEEEEcCCeechhHHHHHHH
Confidence 567899999999999877765555
No 405
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.36 E-value=22 Score=32.78 Aligned_cols=85 Identities=21% Similarity=0.133 Sum_probs=46.2
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee-cCCCCCCCcccCCC
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VRNPEEIPWAETGA 83 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (254)
.|.|+|.|.+|+.++++|.+.. .++... |...... . .. .|.-.+..+.++. ..+++.+ .++
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G-~~v~~~-----D~~~~~~-----~--~~-~l~~~~~g~~~~~~~~~~~~~----~~~ 69 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG-IPFAVM-----DSREQPP-----G--LD-TLAREFPDVELRCGGFDCELL----VQA 69 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC-CeEEEE-----eCCCCch-----h--HH-HHHhhcCCcEEEeCCCChHHh----cCC
Confidence 6899999999999999999874 555432 2100000 0 00 1110000133322 1233333 468
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+-+.+-..+...+.++.+.|+
T Consensus 70 d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 70 SEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCC
Confidence 988876544444455666778887
No 406
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.36 E-value=6.1 Score=36.98 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.5
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|||+|.|.+|..+.+.|.++. ++|.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V~ 28 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG-FKIS 28 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC-CeEE
Confidence 48999999999999999999885 5643
No 407
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=69.24 E-value=8.6 Score=32.02 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+|.|.|+ |.+|..+++.|.++. .++..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G-~~V~~~ 30 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG-HKVIAT 30 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 38999999 999999999999884 565443
No 408
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=69.22 E-value=7.7 Score=26.93 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC
Q 025368 3 KVKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
..+++|+|+|.+|+-+++.|.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc
Confidence 36999999999999999998876
No 409
>PRK09291 short chain dehydrogenase; Provisional
Probab=69.17 E-value=9.3 Score=31.79 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|-|.|+ |.+|+.+++.|.++. ..+..+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G-~~v~~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG-HNVIAG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999 999999999999874 565543
No 410
>PRK08263 short chain dehydrogenase; Provisional
Probab=69.12 E-value=9.7 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=25.6
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+..+|-|.|+ |.+|+.+++.|.++. .++..
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~ 32 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERG-DRVVA 32 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEE
Confidence 66678999999 999999999998774 55543
No 411
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=69.06 E-value=9.3 Score=30.21 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=24.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..||.|+|+|.+|...++++...+ ++++.+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~ 49 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG-AEVVVP 49 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC-CEEEec
Confidence 479999999999999999999996 666554
No 412
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=69.03 E-value=6.8 Score=33.86 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.9
Q ss_pred EEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 6 IGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 6 V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|-|.|+ |++|+.|++.|.++. .+++.+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~ 29 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILV 29 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEE
Confidence 679999 999999999999885 444443
No 413
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=68.91 E-value=7.6 Score=34.82 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=23.4
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++|.|||+|.+|..+...|.++ .+++.-+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G~~v~li 36 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-GASVALV 36 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-CCeEEEE
Confidence 5799999999999999988876 4665443
No 414
>PTZ00188 adrenodoxin reductase; Provisional
Probab=68.88 E-value=7.1 Score=36.77 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
..||+|||+|..|...++.|+.+...++
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~V 66 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKV 66 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeE
Confidence 4699999999999999886654434554
No 415
>PRK06057 short chain dehydrogenase; Provisional
Probab=68.67 E-value=9.4 Score=31.91 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=25.9
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+..+|-|.|+ |.+|..+++.|.++. .++..+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G-~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEG-ATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcC-CEEEEE
Confidence 44578999999 999999999999874 565443
No 416
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=68.66 E-value=7.3 Score=37.07 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=28.0
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATY 34 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~ 34 (254)
+.|+.|+|+|..|..|+|.+..++.+..+++.
T Consensus 116 ~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fi 147 (588)
T COG1086 116 RIRLLIIGAGSAGDLLLRALRRDPEYTPVAFL 147 (588)
T ss_pred CCceEEEcCchHHHHHHHHHHhCCCcceEEEE
Confidence 46999999999999999999999987766654
No 417
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=68.58 E-value=7.9 Score=34.82 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+.+|.|+|+|.+|..+...|.++ .+++.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~-G~~v~l 34 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA-GLSVAL 34 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC-CCEEEE
Confidence 46999999999999999998876 466433
No 418
>PRK07208 hypothetical protein; Provisional
Probab=68.42 E-value=7.4 Score=36.10 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|++.+|.|||+|..|......|.+. .+++.-
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v 32 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTV 32 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEE
Confidence 4467999999999999999988875 355433
No 419
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.35 E-value=22 Score=30.94 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=20.8
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCcee
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v 30 (254)
.+|.|+|. ..+|+-+..+|.++ +..+
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~-gAtV 184 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA-GASV 184 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC-CCEE
Confidence 68999999 69999999988876 3443
No 420
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.23 E-value=30 Score=28.83 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=49.9
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCC-CcccC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEI-PWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~ 81 (254)
||||+|+..|.-|.....-|.-|. |....+....+ ++ . +..+- .+|+++ +- ..
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~-f~~~~v~v~~~---------------Pe-~-------~~~fi-e~P~~~Lp~-~~ 54 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKG-FKNQFVAVKEY---------------PE-E-------LPDFI-EEPEDLLPK-LP 54 (224)
T ss_pred CcEEEEEeeccchHHHHHhHhhhc-cccceEEEEec---------------cc-c-------ccchh-hCHHHhcCC-CC
Confidence 369999999999999999888663 43322322211 10 0 01110 112211 11 13
Q ss_pred CCcEEEEe-cCCccCHHHHHHHHHCCCCeEEe
Q 025368 82 GAEYVVES-TGVFTDKDKAAAHLKGGAKKVII 112 (254)
Q Consensus 82 ~~Dvv~~a-~~~~~s~~~~~~~~~~G~~~~vi 112 (254)
++|+++.- +.++...++.+.+...|.+-+++
T Consensus 55 e~Di~va~~lHPDl~~~L~e~~~~~~~~alIv 86 (224)
T COG1810 55 EADIVVAYGLHPDLLLALPEKAAEGGVKALIV 86 (224)
T ss_pred CCCEEEEeccCccHHHHHHHHHHhCCccEEEE
Confidence 68999987 44567777888777888775655
No 421
>PRK09186 flagellin modification protein A; Provisional
Probab=68.19 E-value=9.7 Score=31.66 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=25.1
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++|.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g-~~v~~~ 34 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAG-GIVIAA 34 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 478999999 999999999999874 565544
No 422
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=68.15 E-value=7.8 Score=34.87 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC-CCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQR-DDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~ 32 (254)
|.+|.|||+|.+|..+...|.++ +.+++.-
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~l 31 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTV 31 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEE
Confidence 36899999999999999999887 3565543
No 423
>PRK07201 short chain dehydrogenase; Provisional
Probab=68.12 E-value=8.1 Score=37.35 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=23.4
Q ss_pred EEEEEcc-CHHHHHHHHHHHcC-CCceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQR-DDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~-p~~~v~~~ 33 (254)
||.|.|+ |++|+.|++.|.++ ...++..+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l 32 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVL 32 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEE
Confidence 8999999 99999999999852 34565554
No 424
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=68.11 E-value=9.2 Score=31.67 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=24.8
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
||++|.|.|+ |.+|..+++.|.++. .++..
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g-~~v~~ 31 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG-WSVGI 31 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC-CEEEE
Confidence 2469999999 999999999999874 56544
No 425
>PRK07890 short chain dehydrogenase; Provisional
Probab=67.95 E-value=9.5 Score=31.76 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=25.8
Q ss_pred CCCcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MGKVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+.++|.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G-~~V~~~ 35 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAG-ADVVLA 35 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEE
Confidence 34579999999 999999999999885 565443
No 426
>PRK06753 hypothetical protein; Provisional
Probab=67.80 E-value=8.1 Score=34.37 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++|.|+|+|.+|..++..|.++ .+++.-
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g~~v~v 28 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-GHEVKV 28 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEE
Confidence 3899999999999999998877 466433
No 427
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=67.76 E-value=9.2 Score=33.28 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
++|.|.|+ |++|..+++.|.++. .++..+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~ 35 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG-YTVKAT 35 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 58999999 999999999999885 565543
No 428
>PRK09135 pteridine reductase; Provisional
Probab=67.52 E-value=10 Score=31.18 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=24.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|-|.|+ |.+|+.+++.|.++. .++..+
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~ 36 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG-YRVAIH 36 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEEE
Confidence 57999999 999999999999874 666554
No 429
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=67.24 E-value=16 Score=32.56 Aligned_cols=28 Identities=14% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+|.|.|+|.+|..++.++.... .++..+
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~ 213 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVI 213 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence 7889888999999999877663 555443
No 430
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=67.18 E-value=7.2 Score=36.82 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
..||+|+|+|.+|..+...++.+. +++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG-~~V~l 33 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAG-HQVLL 33 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCC-CeEEE
Confidence 358999999999999999998874 66643
No 431
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.99 E-value=11 Score=32.76 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=21.6
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|.|+|. +.+|+-+..+|.+.. ..+.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~g-atVt 186 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKN-ASVT 186 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCC-CeEE
Confidence 68999999 569999999998763 4443
No 432
>PRK06179 short chain dehydrogenase; Provisional
Probab=66.78 E-value=12 Score=31.61 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.4
Q ss_pred CC-CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 1 MG-KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 1 M~-~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
|+ ..+|-|.|+ |.+|+++++.|.++. .++..+
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~ 34 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAG-YRVFGT 34 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEE
Confidence 43 457999999 999999999999884 665443
No 433
>PRK08177 short chain dehydrogenase; Provisional
Probab=66.77 E-value=11 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|.|.|+ |.+|+.+++.|.++. ..+..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G-~~V~~~ 31 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG-WQVTAT 31 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC-CEEEEE
Confidence 58999999 999999999999885 565544
No 434
>PRK07045 putative monooxygenase; Reviewed
Probab=66.57 E-value=8.8 Score=34.47 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=23.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+++|.|+|+|..|..+...|.+. .+++.-
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v 33 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-GHSVTV 33 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-CCcEEE
Confidence 57999999999999999988876 465433
No 435
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=66.52 E-value=3.9 Score=37.73 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=46.0
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC-CceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD-DVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAET 81 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p-~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
+||+|+|+ +.-..+|++-|..++ ++.+..+.+..-|. .+.. .+..-..+...-.|..+.+....|.++- ..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~Rl~--~v~~l~~~~~~~~g~~~~v~~ttD~~~A---l~ 73 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE--ERLD--IILTIAKRYVEEVGADIKFEKTMDLEDA---II 73 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH--HHHH--HHHHHHHHHHHhhCCCeEEEEeCCHHHH---hC
Confidence 49999999 667888999999888 58877766542111 1110 0000000000001223455444555433 47
Q ss_pred CCcEEEEecCCc
Q 025368 82 GAEYVVESTGVF 93 (254)
Q Consensus 82 ~~Dvv~~a~~~~ 93 (254)
++|+||.+.-.+
T Consensus 74 gADfVi~~irvG 85 (425)
T cd05197 74 DADFVINQFRVG 85 (425)
T ss_pred CCCEEEEeeecC
Confidence 899999887654
No 436
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=66.50 E-value=9.4 Score=33.55 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=76.5
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETG 82 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
++|-|.|. ||||...++.|++. ..+++-+--+.. |.. ..+....+ .+..++ +.- ..-++++ |...+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~~----g~~--~~v~~~~~-~f~~gD--i~D--~~~L~~v-f~~~~ 67 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSN----GHK--IALLKLQF-KFYEGD--LLD--RALLTAV-FEENK 67 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCC----CCH--HHhhhccC-ceEEec--ccc--HHHHHHH-HHhcC
Confidence 38999999 99999999999997 467666532221 111 11110001 111111 000 0001111 22346
Q ss_pred CcEEEEecCCcc------------------CHHHHHHHHHCCCCeEEecCCCCCCCeEEeeeCcc-cccCCCCeEEcCCh
Q 025368 83 AEYVVESTGVFT------------------DKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEN-EYKPELNIVSNASC 143 (254)
Q Consensus 83 ~Dvv~~a~~~~~------------------s~~~~~~~~~~G~~~~viS~~~~~~~~~v~~vn~~-~i~~~~~iVa~p~C 143 (254)
.|.||.+++.-. +..+++...+.|++.+|+|.-. .|||.... =|.. ......-|+
T Consensus 68 idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStA-----avYG~p~~~PI~E-~~~~~p~NP 141 (329)
T COG1087 68 IDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTA-----AVYGEPTTSPISE-TSPLAPINP 141 (329)
T ss_pred CCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecch-----hhcCCCCCcccCC-CCCCCCCCc
Confidence 899998877632 2335577888999988883220 11111000 0110 111112234
Q ss_pred hh---HhHHHHHHHHhhhcCeeEEEEEeeeecccc
Q 025368 144 TT---NCLAPLAKVIHDKFGIVEGLMTTVHSITAT 175 (254)
Q Consensus 144 ~~---t~~~l~l~pL~~~~~i~~~~v~~~~~~sg~ 175 (254)
|. -.+-.+|.-+.+..++..+. .-+-.+.|+
T Consensus 142 YG~sKlm~E~iL~d~~~a~~~~~v~-LRYFN~aGA 175 (329)
T COG1087 142 YGRSKLMSEEILRDAAKANPFKVVI-LRYFNVAGA 175 (329)
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEE-EEecccccC
Confidence 43 34566777777777766543 455555554
No 437
>PRK06500 short chain dehydrogenase; Provisional
Probab=66.30 E-value=11 Score=31.11 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=24.3
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
..+|.|.|+ |.+|+.+++.|.++. .++..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g-~~v~~ 35 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEG-ARVAI 35 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEE
Confidence 369999999 999999999999885 56543
No 438
>PRK06924 short chain dehydrogenase; Provisional
Probab=66.28 E-value=11 Score=31.33 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++-|.|+ |.+|+.+++.|.++. .++..+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g-~~V~~~ 31 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKG-THVISI 31 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcC-CEEEEE
Confidence 58999999 999999999999885 565444
No 439
>PRK06194 hypothetical protein; Provisional
Probab=65.95 E-value=11 Score=32.06 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=24.1
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+.++-|.|+ |.+|+++++.|.++. .++..
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G-~~V~~ 35 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALG-MKLVL 35 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCC-CEEEE
Confidence 368999999 999999999999885 56543
No 440
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.86 E-value=21 Score=31.07 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.8
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcC
Q 025368 4 VKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
.+|.|+|. ..+|+-|..+|.++
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~ 181 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE 181 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC
Confidence 58899999 99999998888766
No 441
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=65.65 E-value=11 Score=36.10 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=24.4
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|.|.|+ |.+|+.+++.|+++. .++..+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G-~~Vval 110 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLG-FRVRAG 110 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CeEEEE
Confidence 57999999 999999999999874 676554
No 442
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=65.51 E-value=19 Score=36.16 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCC-cEEEEEccCHHHHHH-HHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCc
Q 025368 1 MGK-VKIGINGFGRIGRLV-ARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 78 (254)
Q Consensus 1 M~~-~~V~IvG~G~~G~~l-~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 78 (254)
|++ .+|.|+|.|-.|... +++|.++. .++... |....... . .|.-.| +.++...+.+.+
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G-~~V~~s-----D~~~~~~~-~--------~L~~~g--i~~~~g~~~~~~-- 61 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRG-YSVSGS-----DLSEGKTV-E--------KLKAKG--ARFFLGHQEEHV-- 61 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCC-CeEEEE-----CCCCChHH-H--------HHHHCC--CEEeCCCCHHHc--
Confidence 543 479999999999997 88888774 665432 21100000 0 111012 233221222222
Q ss_pred ccCCCcEEEEecCCccCHHHHHHHHHCCC
Q 025368 79 AETGAEYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 79 ~~~~~Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
.++|+|+-..+-..+-.....+.+.|+
T Consensus 62 --~~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 62 --PEDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred --CCCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 468999876554444455666778887
No 443
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=65.46 E-value=10 Score=30.18 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.0
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||.|||+|+.|...+..|..+ ..++.-+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEE
Confidence 689999999999999999854 4665554
No 444
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=65.45 E-value=8.6 Score=33.09 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=23.1
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
||.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEE
Confidence 6889999 999999999998875 565443
No 445
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=65.42 E-value=10 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=23.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcC-CCceeE
Q 025368 3 KVKIGINGFGRIGRLVARVILQR-DDVELV 31 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~-p~~~v~ 31 (254)
+..|.|||+|.+|..+...|.+. |..++.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~ 31 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIA 31 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEE
Confidence 47999999999999999998874 445543
No 446
>PRK08267 short chain dehydrogenase; Provisional
Probab=65.32 E-value=11 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.213 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++-|.|+ |.+|+.+++.|.++. ..+..+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G-~~V~~~ 31 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG-WRVGAY 31 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CeEEEE
Confidence 58999999 999999999999875 555443
No 447
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=65.32 E-value=6.9 Score=29.88 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEccCHHHHHHHHHHHcCC
Q 025368 5 KIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p 26 (254)
||.|+|+|-+|.++++.|....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G 22 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG 22 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC
Confidence 6899999999999999998764
No 448
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.13 E-value=25 Score=30.50 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=17.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcC
Q 025368 4 VKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
.+|.|+|- ..+|+-|..+|.++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~ 181 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE 181 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC
Confidence 57888888 88888888888765
No 449
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=64.97 E-value=12 Score=33.97 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=23.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHc-CCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~ 32 (254)
..+|.|||.|..|---+..|++ ||.+.+.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi 50 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDI 50 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEe
Confidence 4699999999999888877766 67666544
No 450
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=64.96 E-value=10 Score=34.23 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=23.8
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+.+|.|+|+|.+|..+...|.++ .+++.-
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v 30 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVV 30 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEE
Confidence 47999999999999999888876 466443
No 451
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=64.81 E-value=5.9 Score=35.60 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.7
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
++||+|||+|-.|.....+|..|-++.+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTL 35 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTL 35 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEE
Confidence 4799999999999999999998877654
No 452
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=64.81 E-value=3.4 Score=38.10 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.5
Q ss_pred cEEEEEccCHHHHHHH
Q 025368 4 VKIGINGFGRIGRLVA 19 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~ 19 (254)
+||+|+|+|.+|..+.
T Consensus 1 ~KIaIIGaGs~G~a~a 16 (423)
T cd05297 1 IKIAFIGAGSVVFTKN 16 (423)
T ss_pred CeEEEECCChHHhHHH
Confidence 4899999999998744
No 453
>PRK12742 oxidoreductase; Provisional
Probab=64.69 E-value=8 Score=31.74 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=24.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
..+|-|.|+ |.+|+++++.|.++. .++..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G-~~v~~ 35 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDG-ANVRF 35 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEE
Confidence 368999999 999999999998874 56543
No 454
>PRK12746 short chain dehydrogenase; Provisional
Probab=64.69 E-value=8 Score=32.18 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=23.7
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.++.|.|+ |.+|.++++.|+++. .++..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G-~~v~i 35 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDG-ALVAI 35 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC-CEEEE
Confidence 69999999 999999999999884 45543
No 455
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=64.66 E-value=8.2 Score=31.77 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
..++.|.|+ |.+|+++++.|.++.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g 30 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQG 30 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC
Confidence 368999999 999999999998875
No 456
>PLN02852 ferredoxin-NADP+ reductase
Probab=64.53 E-value=9.2 Score=36.00 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=23.6
Q ss_pred CcEEEEEccCHHHHHHHHHHHc-CCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQ-RDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~-~p~~~v~~ 32 (254)
..||+|||+|..|...++.|++ ++..++.-
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv 56 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDI 56 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEE
Confidence 3699999999999999999874 34555543
No 457
>PRK12939 short chain dehydrogenase; Provisional
Probab=64.50 E-value=13 Score=30.69 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=24.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++-|.|+ |.+|+.+++.|.++. .++..+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G-~~v~~~ 37 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAG-ATVAFN 37 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcC-CEEEEE
Confidence 68999999 999999999998874 565544
No 458
>PRK06185 hypothetical protein; Provisional
Probab=64.50 E-value=10 Score=34.26 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..+|.|+|+|.+|..+...|.++ .+++.-+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~-G~~v~li 35 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARA-GVDVTVL 35 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEE
Confidence 36899999999999999988876 4665443
No 459
>PRK10637 cysG siroheme synthase; Provisional
Probab=64.46 E-value=32 Score=32.01 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=50.2
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEee-cCCCCCCCcccC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFG-VRNPEEIPWAET 81 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~ 81 (254)
..||.|+|+|.++..=++.|++.. ..+.-+. .... ..+ . .+...+ .+.... ....+++ +
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~g-a~v~vis-p~~~---~~~-----~-----~l~~~~-~i~~~~~~~~~~dl----~ 71 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAG-ARLTVNA-LAFI---PQF-----T-----AWADAG-MLTLVEGPFDESLL----D 71 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEc-CCCC---HHH-----H-----HHHhCC-CEEEEeCCCChHHh----C
Confidence 379999999999988777777663 4433321 1100 000 0 000011 122221 1223333 6
Q ss_pred CCcEEEEecCC-ccCHHHHHHHHHCCCCeEEecCCC
Q 025368 82 GAEYVVESTGV-FTDKDKAAAHLKGGAKKVIISAPS 116 (254)
Q Consensus 82 ~~Dvv~~a~~~-~~s~~~~~~~~~~G~~~~viS~~~ 116 (254)
++++||-||+. ....+....+.+.|+ .+-.+|+
T Consensus 72 ~~~lv~~at~d~~~n~~i~~~a~~~~~--lvN~~d~ 105 (457)
T PRK10637 72 TCWLAIAATDDDAVNQRVSEAAEARRI--FCNVVDA 105 (457)
T ss_pred CCEEEEECCCCHHHhHHHHHHHHHcCc--EEEECCC
Confidence 78999999976 455666666667776 4434553
No 460
>PRK12828 short chain dehydrogenase; Provisional
Probab=64.45 E-value=12 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.2
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++-|.|+ |.+|+.+++.|.++ ..++..+
T Consensus 8 k~vlItGatg~iG~~la~~l~~~-G~~v~~~ 37 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAAR-GARVALI 37 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHC-CCeEEEE
Confidence 58999999 99999999999887 4665444
No 461
>PRK06172 short chain dehydrogenase; Provisional
Probab=64.44 E-value=13 Score=30.91 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++-|.|+ |.+|.++++.|.++. .++..+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G-~~v~~~ 37 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREG-AKVVVA 37 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEE
Confidence 69999999 999999999999874 565444
No 462
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=64.30 E-value=13 Score=31.10 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++-|.|+ |.+|+++++.|.++. .++..+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G-~~v~~~ 36 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEG-ARVVIA 36 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEE
Confidence 57999999 999999999999884 565443
No 463
>PRK08703 short chain dehydrogenase; Provisional
Probab=64.20 E-value=13 Score=30.63 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=24.7
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..++.|.|+ |.+|+.+++.|.++. ..+..+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g-~~V~~~ 36 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAG-ATVILV 36 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC-CEEEEE
Confidence 368999999 999999999999874 565443
No 464
>PRK07588 hypothetical protein; Provisional
Probab=63.70 E-value=10 Score=34.11 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=23.0
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
++|.|||+|.+|..+...|.++ .+++.-
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G~~v~v 28 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-GHEPTL 28 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCceEE
Confidence 4899999999999999999877 365433
No 465
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=63.63 E-value=10 Score=33.23 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=22.9
Q ss_pred EEEEEcc-CHHHHHHHHHHHcCCC-ceeEEe
Q 025368 5 KIGINGF-GRIGRLVARVILQRDD-VELVAT 33 (254)
Q Consensus 5 ~V~IvG~-G~~G~~l~~~L~~~p~-~~v~~~ 33 (254)
+|.|.|+ |++|+.|++.|.++.. ..+..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l 31 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICL 31 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEE
Confidence 5789999 9999999999998742 455443
No 466
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=63.63 E-value=14 Score=30.63 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=25.1
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..+|-|.|+ |.+|+.+++.|.++. ..+..+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~ 35 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAG-ADIVGA 35 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 468999999 999999999999884 565544
No 467
>PRK05875 short chain dehydrogenase; Provisional
Probab=63.62 E-value=14 Score=31.24 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=25.0
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..++-|.|+ |.+|..+++.|.++. .++..+
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G-~~V~~~ 37 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAG-AAVMIV 37 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEE
Confidence 479999999 999999999999875 565544
No 468
>PRK07589 ornithine cyclodeaminase; Validated
Probab=63.61 E-value=2.8 Score=37.60 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=50.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
.+++|+|+|..++.-++++..--.++-+.++.+..+. .-.+. ..+. . .+..+.+. .++++. ..++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~-a~~~~-~~~~-----~---~~~~v~~~--~~~~~a---v~~A 194 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA-TAKLA-RNLA-----G---PGLRIVAC--RSVAEA---VEGA 194 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH-HHHHH-HHHH-----h---cCCcEEEe--CCHHHH---HhcC
Confidence 5799999999999998877754335545555443211 01111 0000 0 01112222 344433 3689
Q ss_pred cEEEEecCCccCHH-HHHHHHHCCCCeEEecCC
Q 025368 84 EYVVESTGVFTDKD-KAAAHLKGGAKKVIISAP 115 (254)
Q Consensus 84 Dvv~~a~~~~~s~~-~~~~~~~~G~~~~viS~~ 115 (254)
|+|+.||++....- .-.+.++.|..+.-|.++
T Consensus 195 DIIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 195 DIITTVTADKTNATILTDDMVEPGMHINAVGGD 227 (346)
T ss_pred CEEEEecCCCCCCceecHHHcCCCcEEEecCCC
Confidence 99999998533111 223456788832223444
No 469
>PRK07102 short chain dehydrogenase; Provisional
Probab=63.51 E-value=13 Score=30.68 Aligned_cols=29 Identities=31% Similarity=0.232 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++-|.|+ |.+|..+++.|.++. .++..+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G-~~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG-ARLYLA 31 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC-CEEEEE
Confidence 58999999 999999999999874 565443
No 470
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=63.46 E-value=11 Score=35.28 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
.+|+|+|+|.+|+.+++.+.... .++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~G-a~Vi 281 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFG-ARVV 281 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEEE
Confidence 68999999999999999998763 5643
No 471
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=63.43 E-value=7.5 Score=34.64 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.9
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcC
Q 025368 2 GKVKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
+++||+|+|.|+.|..+.+++.+.
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n 43 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGEN 43 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhh
Confidence 458999999999999999998653
No 472
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=63.36 E-value=11 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.5
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+.+|.|||+|.+|..+...|.++ .+++.-
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~v 30 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVI 30 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEE
Confidence 47999999999999999888776 465433
No 473
>PRK06126 hypothetical protein; Provisional
Probab=63.26 E-value=10 Score=35.99 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.+|.|||+|.+|..+...|.++. +++.-+
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G-~~v~vi 36 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRG-VDSILV 36 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC-CcEEEE
Confidence 58999999999999999998874 665443
No 474
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.01 E-value=15 Score=30.11 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.8
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..+|.|.|+ |.+|..+++.|.++. .++..+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G-~~V~~~ 35 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEG-AQVCIN 35 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 359999999 999999999998874 566544
No 475
>PRK07814 short chain dehydrogenase; Provisional
Probab=62.71 E-value=15 Score=30.85 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=25.2
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..++-|.|+ |.+|+++++.|.++. .++..+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G-~~Vi~~ 40 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAG-ADVLIA 40 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEE
Confidence 468999999 999999999999885 576544
No 476
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=62.69 E-value=9 Score=35.56 Aligned_cols=30 Identities=33% Similarity=0.310 Sum_probs=24.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcC-CCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQR-DDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~~ 33 (254)
++|+|+|+|.+|......|.++ |+++++-+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lf 31 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLF 31 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEE
Confidence 4899999999999999988866 66776553
No 477
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=62.51 E-value=8.5 Score=34.44 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=22.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDD 27 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~ 27 (254)
..+|||+|+|.+|+-+.+-|..+.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh 76 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGH 76 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCc
Confidence 4799999999999999999988864
No 478
>PRK08264 short chain dehydrogenase; Validated
Probab=62.44 E-value=9.6 Score=31.33 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
.+|-|.|+ |.+|+++++.|+++.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G 30 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARG 30 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC
Confidence 58999999 999999999999885
No 479
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.41 E-value=15 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
.++-|.|+ |.+|..+++.|.++. .++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g-~~vi~~ 36 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREG-ASVVVA 36 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 68999999 999999999999874 565443
No 480
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=62.36 E-value=12 Score=33.80 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.4
Q ss_pred EEEEEccCHHHHHHHHHHHcCCCcee
Q 025368 5 KIGINGFGRIGRLVARVILQRDDVEL 30 (254)
Q Consensus 5 ~V~IvG~G~~G~~l~~~L~~~p~~~v 30 (254)
+|.|||+|.+|......|..+. .+|
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g-~~V 26 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAG-HEV 26 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCC-CEE
Confidence 8999999999999999888773 454
No 481
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=62.18 E-value=5.2 Score=35.59 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=49.3
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEeeeeeeccccccccccceeecCCeeEEECCEEEEEeecCCCCCCCcccCCC
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGA 83 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~~~~s~~g~~~~~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
-.++|+|+|..++--++.+...=+++=..++.+..++. -++. .... + . .+. .+....+.++. .+++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a-~~l~---~-~---~~~--~v~a~~s~~~a---v~~a 196 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA-ARLR---K-R---GGE--AVGAADSAEEA---VEGA 196 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH-HHHH---h-h---cCc--cceeccCHHHH---hhcC
Confidence 36899999999999999888764455555555442211 1110 0000 0 0 011 12111333332 3689
Q ss_pred cEEEEecCCccCHHHHHHHHHCCC
Q 025368 84 EYVVESTGVFTDKDKAAAHLKGGA 107 (254)
Q Consensus 84 Dvv~~a~~~~~s~~~~~~~~~~G~ 107 (254)
|+|+.||+.... -.....++.|.
T Consensus 197 DiIvt~T~s~~P-il~~~~l~~G~ 219 (330)
T COG2423 197 DIVVTATPSTEP-VLKAEWLKPGT 219 (330)
T ss_pred CEEEEecCCCCC-eecHhhcCCCc
Confidence 999999998652 22334566787
No 482
>PRK06475 salicylate hydroxylase; Provisional
Probab=62.03 E-value=12 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=22.6
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELV 31 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~ 31 (254)
.||.|+|+|..|..+..+|.++ .+++.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~ 29 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVT 29 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEE
Confidence 6999999999999999988776 46543
No 483
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.86 E-value=17 Score=31.64 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.0
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
.+|.|+|+ |.+|+-+..+|.++.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 58999999 679999999998764
No 484
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=61.83 E-value=10 Score=34.65 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.2
Q ss_pred cEEEEEccCHHHHHHHHHHHcC
Q 025368 4 VKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
+||+|||+|..|....+.|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999999875
No 485
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.73 E-value=30 Score=30.14 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=17.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcC
Q 025368 4 VKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
.+|.|+|- ..+|+-|..+|.++
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~ 180 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE 180 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC
Confidence 57888888 88888888877765
No 486
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=61.70 E-value=12 Score=33.77 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..|.|||+|.+|..+...|..+ .+++.-+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~vi 31 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS-GLEVLLL 31 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC-CCEEEEE
Confidence 6899999999999999998876 4665443
No 487
>PRK05993 short chain dehydrogenase; Provisional
Probab=61.67 E-value=16 Score=30.99 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=24.3
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+.+|.|.|+ |.+|+.+++.|.++. .++..+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G-~~Vi~~ 34 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG-WRVFAT 34 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEE
Confidence 357999999 999999999998874 665443
No 488
>PRK07825 short chain dehydrogenase; Provisional
Probab=61.40 E-value=16 Score=30.77 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=24.2
Q ss_pred CCcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 2 GKVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 2 ~~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
+..++-|.|+ |.+|+++++.|.++. ..+..
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G-~~v~~ 34 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALG-ARVAI 34 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEE
Confidence 3468999999 999999999999874 55433
No 489
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=61.33 E-value=8.2 Score=31.68 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.3
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCC
Q 025368 3 KVKIGINGFGRIGRLVARVILQRD 26 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p 26 (254)
..||+|+|+|-+|.+++..|....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 469999999999999999998764
No 490
>PRK07538 hypothetical protein; Provisional
Probab=61.24 E-value=12 Score=34.02 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=22.8
Q ss_pred cEEEEEccCHHHHHHHHHHHcCCCceeEE
Q 025368 4 VKIGINGFGRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~p~~~v~~ 32 (254)
|+|.|+|+|..|..+...|.++ .+++.-
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~v 28 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-GIEVVV 28 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEE
Confidence 3899999999999999988876 465433
No 491
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=61.16 E-value=11 Score=33.86 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.3
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCC
Q 025368 4 VKIGINGF-GRIGRLVARVILQRD 26 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p 26 (254)
.+|-|+|+ |-+|..+++++....
T Consensus 159 ~~vLv~ggsggVG~~aiQlAk~~~ 182 (347)
T KOG1198|consen 159 KSVLVLGGSGGVGTAAIQLAKHAG 182 (347)
T ss_pred CeEEEEeCCcHHHHHHHHHHHhcC
Confidence 47899999 999999999877775
No 492
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=61.13 E-value=14 Score=34.22 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCCcEEEEEccCHHHHHHHHHHHcC-CCceeEEe
Q 025368 1 MGKVKIGINGFGRIGRLVARVILQR-DDVELVAT 33 (254)
Q Consensus 1 M~~~~V~IvG~G~~G~~l~~~L~~~-p~~~v~~~ 33 (254)
|+++.|.|||+|-+|..+.+.|.+. |+.++.-+
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~ll 34 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALL 34 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEE
Confidence 7789999999999999999999876 45665443
No 493
>PRK09072 short chain dehydrogenase; Provisional
Probab=60.97 E-value=17 Score=30.47 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.6
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
..++-|.|+ |.+|+++++.|+++. .++..+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~ 35 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG-ARLLLV 35 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEE
Confidence 368999999 999999999999874 565444
No 494
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=60.94 E-value=13 Score=34.41 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=19.9
Q ss_pred cEEEEEccCHHHHHHHHHHHcC
Q 025368 4 VKIGINGFGRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~G~~G~~l~~~L~~~ 25 (254)
.+|.|||+|..|...++.|.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 5899999999999999999864
No 495
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=60.88 E-value=12 Score=33.76 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=24.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+++|.|+|+|.+|..++..|.++ .+++.-+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~ 47 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALI 47 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-CCEEEEE
Confidence 36899999999999999999877 4665443
No 496
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=60.81 E-value=12 Score=35.48 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=24.4
Q ss_pred CcEEEEEccCHHHHHHHHHHHcCCCceeEEe
Q 025368 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 3 ~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+.+|.|||+|.+|..+...|.++ .+++.-+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~ 39 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY-GVRVLVL 39 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEE
Confidence 57999999999999999988877 4665443
No 497
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.69 E-value=26 Score=30.49 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=16.9
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcC
Q 025368 4 VKIGINGF-GRIGRLVARVILQR 25 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~ 25 (254)
.+|.|+|- ..+|+-|..+|.++
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~ 180 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER 180 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC
Confidence 47788888 88888888777765
No 498
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=60.64 E-value=14 Score=32.05 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=24.1
Q ss_pred CcEEEEEcc-CHHHHHHHHHHHcCCCceeEE
Q 025368 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32 (254)
Q Consensus 3 ~~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~ 32 (254)
.++|-|.|+ |++|+.|++.|.++. .++..
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~ 34 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRG-YTINA 34 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEE
Confidence 368999999 999999999999874 56543
No 499
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.62 E-value=16 Score=30.37 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.1
Q ss_pred cEEEEEcc-CHHHHHHHHHHHcCCCceeEEe
Q 025368 4 VKIGINGF-GRIGRLVARVILQRDDVELVAT 33 (254)
Q Consensus 4 ~~V~IvG~-G~~G~~l~~~L~~~p~~~v~~~ 33 (254)
+.+-|.|+ |.+|.++++.|.++. .++..+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g-~~vi~~ 32 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG-FDLAIN 32 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC-CEEEEE
Confidence 57889999 999999999999884 566554
No 500
>PRK06988 putative formyltransferase; Provisional
Probab=60.57 E-value=15 Score=32.31 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.6
Q ss_pred CCcEEEEEccCHHHHHHHHHHHcCCCceeEEeeee
Q 025368 2 GKVKIGINGFGRIGRLVARVILQRDDVELVATYMF 36 (254)
Q Consensus 2 ~~~~V~IvG~G~~G~~l~~~L~~~p~~~v~~~~~~ 36 (254)
|||||.++|.+..|...++.|.++ .++++.+...
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt~ 34 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLAR-GVDVALVVTH 34 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhC-CCCEEEEEcC
Confidence 147999999999999999999876 4788777543
Done!