RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025368
(254 letters)
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 523 bits (1349), Expect = 0.0
Identities = 221/265 (83%), Positives = 241/265 (90%), Gaps = 11/265 (4%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
MGK+KIGINGFGRIGRLVARV LQ +DVELVA TYMFKYD+VHGQWKH +
Sbjct: 1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
+K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFTDK+KAAAHLKGGAKK
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 110 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
V+ISAPSKDAPMFV GVNE++Y +++IVSNASCTTNCLAPLAKVIHD FGI+EGLMTTV
Sbjct: 121 VVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTV 180
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
H+ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV 240
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLTVR+EK ASYD IK+AIK
Sbjct: 241 DVSVVDLTVRIEKAASYDAIKSAIK 265
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 508 bits (1310), Expect = 0.0
Identities = 164/262 (62%), Positives = 195/262 (74%), Gaps = 13/262 (4%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
V++ INGFGRIGRLV R+ L R +VE+VA YMFKYDS HG++ E+
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAG-EVSH 60
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
D ++ K + + R+P +PW + + ++STGVF + D A H+ GAKKV+I
Sbjct: 61 DDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 113 SAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
+APS APMFV+GVNE +Y +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGMAFRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTV+L K+ +YDEIK +K
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVK 261
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 504 bits (1300), Expect = 0.0
Identities = 162/262 (61%), Positives = 197/262 (75%), Gaps = 14/262 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA YM KYDS HG++ ++VK
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDG-TVEVK 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
D ++ G K + V R+P + W E G + V E+TG+F + A H+ GAKKV+++
Sbjct: 61 DGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 119
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
PSKD PMFV G N ++Y + +IVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 GPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAT 178
Query: 173 TATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVS 232
TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGMAFRVPT +VS
Sbjct: 179 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS 238
Query: 233 VVDLTVRLEKDASYDEIKAAIK 254
VVDLTVRLEK A+Y++IKAA+K
Sbjct: 239 VVDLTVRLEKAATYEQIKAAVK 260
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 503 bits (1297), Expect = 0.0
Identities = 159/266 (59%), Positives = 197/266 (74%), Gaps = 15/266 (5%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
++ +GINGFGRIGRLV R +++ V++VA YMFKYDS HG++K
Sbjct: 5 ARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKG-S 62
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
++ ++ + L+ ++V+ + P++IPW G+ YVVESTGV+ A+ H+ GA++
Sbjct: 63 VEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQR 121
Query: 110 VIISAPSKDAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
V+ISAPS DAPMFV+GVNEN+Y P +NIVSNASCTTNCLAPLAKVIH++FGIVEGLMTT
Sbjct: 122 VVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTT 181
Query: 169 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 228
VHS TATQKTVDGPS K WR GR A NIIP+STGAAKAV KV+P L GKLTGMAFRVPT
Sbjct: 182 VHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPT 241
Query: 229 VDVSVVDLTVRLEKDASYDEIKAAIK 254
DVSVVDLT RL + A Y IK A+K
Sbjct: 242 PDVSVVDLTCRLAQPAPYSAIKEAVK 267
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 503 bits (1297), Expect = 0.0
Identities = 162/268 (60%), Positives = 193/268 (72%), Gaps = 16/268 (5%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
M K+GINGFGRIGRLV R R D+E+VA Y+ KYDSVHGQ+ E
Sbjct: 9 MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPC-E 67
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
+ D LL GEK V+VF ++P +IPW + + V ESTGVF K+ A++HLKGGAKK
Sbjct: 68 VTHADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 126
Query: 110 VIISAPSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
VI+SAP KD P++V+G+N ++Y + IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 127 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 186
Query: 169 VHSITATQKTVDGPSS--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 226
VH+ TA Q VDGPS KDWR GR A NIIP+STGAAKAVGKVLP LNGKLTG+AFRV
Sbjct: 187 VHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRV 246
Query: 227 PTVDVSVVDLTVRLEKDASYDEIKAAIK 254
P VSVVDL RL+K A Y+E+ IK
Sbjct: 247 PIGTVSVVDLVCRLQKPAKYEEVALEIK 274
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 501 bits (1293), Expect = 0.0
Identities = 175/265 (66%), Positives = 203/265 (76%), Gaps = 13/265 (4%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
MGKVK+G+NGFGRIGRLV R V++VA YMF+YDS HG++
Sbjct: 1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG-T 59
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
+K ++ K L+ P+T+F R+P +I W + GAEYVVESTGVFT +KA AHL+GGAK+
Sbjct: 60 VKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 110 VIISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
VIISAPS DAPMFV+GVN +Y L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTV
Sbjct: 119 VIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTV 178
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
H+ITATQKTVDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGMAFRVPT
Sbjct: 179 HAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTA 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDLT RLEK A YD+IK +K
Sbjct: 239 NVSVVDLTCRLEKPAKYDDIKKVVK 263
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 501 bits (1293), Expect = 0.0
Identities = 167/269 (62%), Positives = 198/269 (73%), Gaps = 17/269 (6%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHE 49
+ +GINGFGRIGRLV R ++R+D+ +VA Y+ KYDSVHG +
Sbjct: 15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNG-T 73
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
++V L K V VF ++P EIPW +GA+ V ESTGVFT ++KA+ HLKGGAKK
Sbjct: 74 VEVSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKK 132
Query: 110 VIISAPSKD-APMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
VIISAP KD PM+V+GVN EY P + N++SNASCTTNCLAPLAK+I+DKFGIVEGLMT
Sbjct: 133 VIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMT 192
Query: 168 TVHSITATQKTVDGPSS--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFR 225
TVHS+TA Q TVDGPS KDWR GR A NIIP+STGAAKAVGKV+PALNGKLTGMA R
Sbjct: 193 TVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIR 252
Query: 226 VPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
VPT DVSVVDLT +L K AS +EI A+K
Sbjct: 253 VPTPDVSVVDLTCKLAKPASIEEIYQAVK 281
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 486 bits (1254), Expect = e-175
Identities = 146/276 (52%), Positives = 190/276 (68%), Gaps = 25/276 (9%)
Query: 4 VKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKHH 48
+K+GINGFGRIGR+V + + + ++++VA Y +YD+VHG++K+
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 49 -------ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA 101
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT K A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 102 HLKGGAKKVIISAPSK-DAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKV-IHDK 158
HL+GGA+KV+ISAP+ A V+GVN +EY P E ++VSNASCTTNCLAP+ V + +
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 159 FGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 218
FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS+TGAAKAVG V+P+ GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LTGM+FRVPT DVSVVDLT +D S EI AA+K
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 278
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 446 bits (1151), Expect = e-160
Identities = 140/263 (53%), Positives = 183/263 (69%), Gaps = 15/263 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+ E+ V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDA-EVSVN 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
+ L+ K + V R+PE + W E G + VVESTG FT ++ AA HL+ GAKKVIIS
Sbjct: 61 GN-NLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APSKDA-PMFVVGVNENEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K+ V+GVN+++Y P+ +++SNASCTTNCLAP AKV+H++FGIV G+MTTVHS
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD R RAA+ +IIP++TGAAKAV VLP L GKL GMA RVPT +V
Sbjct: 180 YTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNV 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
SVVDL LEK+ + +E+ AA+K
Sbjct: 239 SVVDLVAELEKEVTVEEVNAALK 261
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 441 bits (1138), Expect = e-158
Identities = 123/264 (46%), Positives = 167/264 (63%), Gaps = 15/264 (5%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+ INGFGRIGRL R I + + +E+VA ++ KYD++ G++ E++V
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTG-EVEVV 63
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
D K V F + ++PW + + V+E TG +TDKDKA AH++ GAKKV+IS
Sbjct: 64 DG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLIS 122
Query: 114 APSK-DAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
AP+ D V N E +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 APATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAY 182
Query: 173 TATQKTVDGPSSK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q T D P K D R RAA+ NIIP+STGAAKA+GKV+P ++GKL G A RVP
Sbjct: 183 TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG 242
Query: 232 SVVDLTVRLEK-DASYDEIKAAIK 254
S+ +LTV LEK D + +++ A+K
Sbjct: 243 SLTELTVVLEKQDVTVEQVNEAMK 266
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 432 bits (1113), Expect = e-154
Identities = 125/265 (47%), Positives = 164/265 (61%), Gaps = 15/265 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQR--DDVELVA----------TYMFKYDSVHGQWKHHEL 50
K+K+ INGFGRIGR R R +++V +++ KYDS+ G + ++
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDA-DV 59
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 110
K D + K + V RNP +PW + G + V+E TGVF D+D A HL+ GAKKV
Sbjct: 60 KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 119
Query: 111 IISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
+I+AP K P +VVGVNE Y I+SNASCTTNCLAP KV+ KFGI++G MTT
Sbjct: 120 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 179
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q+ +D +D R RAA NI+P+STGAAKAV VLP L GKL G+A RVPT
Sbjct: 180 HSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTP 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDL V++ K +E+ AA +
Sbjct: 239 NVSVVDLVVQVSKKTFAEEVNAAFR 263
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 431 bits (1112), Expect = e-154
Identities = 127/265 (47%), Positives = 182/265 (68%), Gaps = 16/265 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKV 52
+K+GINGFGRIGR R R+++E+VA ++ KYDSVHG +K ++
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKG-SVEA 60
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
KDD +++ K + VF ++P +IPW + G + V+E+TGVF D++ A+ HL+GGAKKVII
Sbjct: 61 KDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 113 SAPSKDA-PMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
+AP+K+ V+GVNE +Y P E NI+SNASCTTNCLAP KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
+ T Q+ +D P KD+R RAA+ NI+P++TGAAKA+G+V+P L GKL G A RVP D
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 231 VSVVDLTVRLEK-DASYDEIKAAIK 254
S++DLTV + K +S +E+ +
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFR 263
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 429 bits (1105), Expect = e-153
Identities = 124/264 (46%), Positives = 174/264 (65%), Gaps = 15/264 (5%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKV 52
++ INGFGRIGR+V R ++ E+VA ++ KYD+VHG++ ++
Sbjct: 4 MTRVAINGFGRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDG-TVEA 62
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
+D LL K + + R+P+E+PW + G E V+E+TG F K+KA H++ GAKKVI+
Sbjct: 63 FED-HLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVIL 121
Query: 113 SAPSKDA-PMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
+AP K+ VVGVNE++ + ++SNASCTTNCLAP+ KV+ ++FGI GLMTTVH
Sbjct: 122 TAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVH 181
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVD 230
+ T QK +D P KD R RA +IIP++TGAAKA+ KVLP LNGKL GMA RVPT +
Sbjct: 182 AYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPN 240
Query: 231 VSVVDLTVRLEKDASYDEIKAAIK 254
VS+VDL V +++D + + I A K
Sbjct: 241 VSLVDLVVDVKRDVTVEAINDAFK 264
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 424 bits (1094), Expect = e-151
Identities = 128/263 (48%), Positives = 172/263 (65%), Gaps = 16/263 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR V R++ R VE+ ++ KYDS++ ++ E+
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG-VEVALINDLTDNKTLAHLLKYDSIYHRFPG-EVAYD 58
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
D L K + V++P+EIPWAE G V+ESTGVFTD DKA AHL+GGAKKVII+
Sbjct: 59 DQ-YLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIIT 117
Query: 114 APSKDA-PMFVVGVNENEYKPEL-NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
AP+K V+GVN Y P +I+SNASCTTN LAP+ KV+ + FG+ + LMTTVHS
Sbjct: 118 APAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHS 177
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD R RAA+ NIIP++TGAAKA VLP+L G+ GMA RVPT
Sbjct: 178 YTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATG 236
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
S+ D+T L+++ + +E+ AA+K
Sbjct: 237 SISDITALLKREVTAEEVNAALK 259
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 422 bits (1087), Expect = e-150
Identities = 117/267 (43%), Positives = 172/267 (64%), Gaps = 18/267 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQR--DDVELVA----------TYMFKYDSVHGQWKHHEL 50
+++ INGFGRIGR R R D+E+VA ++ +YDSV G++ ++
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNA-DI 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 110
++ ++ K + + RNP +PW E + V+ESTGVF + A+ H++ GAKKV
Sbjct: 61 SYDEN-SITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKV 119
Query: 111 IISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
+I+AP K +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G MT
Sbjct: 120 LITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMT 179
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T HS T Q+ +D +D R RAA+ NI+P++TGAAKAV V+P L GKL G+A RVP
Sbjct: 180 TTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVP 238
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T +VSVVDL V++EK +++ ++
Sbjct: 239 TPNVSVVDLVVQVEKPTITEQVNEVLQ 265
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 419 bits (1080), Expect = e-149
Identities = 119/269 (44%), Positives = 173/269 (64%), Gaps = 21/269 (7%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKV 52
+K+ INGFGRIGR V ++ +R +++VA ++ KYDS G + +++
Sbjct: 21 SMKLAINGFGRIGRNVFKIAFERG-IDIVAINDLTDPKTLAHLLKYDSTFGVYNK-KVES 78
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAA----HLK-GGA 107
+D ++ + + + R+P+ +PWA+ G + V+ESTGVF+ H+ GA
Sbjct: 79 RDG-AIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGA 137
Query: 108 KKVIISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 166
KKVI++ P+KD V+GVN+++ +L VSNASCTTNCLAPLAKV+H+ FGI +GLM
Sbjct: 138 KKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLM 197
Query: 167 TTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 226
TTVH+ T Q+ +D P D R RAA+ +IIP+STGAAKAVG VLP L GKL G + RV
Sbjct: 198 TTVHAYTNDQRILDLP-HSDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRV 256
Query: 227 PTVDVSVVDLTVRLEK-DASYDEIKAAIK 254
P S+VDLTV+L+K D + +EI + ++
Sbjct: 257 PVPTGSIVDLTVQLKKKDVTKEEINSVLR 285
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 418 bits (1078), Expect = e-149
Identities = 117/267 (43%), Positives = 172/267 (64%), Gaps = 18/267 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQR--DDVELVA----------TYMFKYDSVHGQWKHHEL 50
+++ INGFGRIGR R R D+E+VA ++ +YDSV G++ ++
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNA-DI 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 110
++ ++ K + + RNP +PW E + V+ESTGVF + A+ H++ GAKKV
Sbjct: 61 SYDEN-SITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKV 119
Query: 111 IISAPSK--DAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
+I+AP K +V+GVN++EY+ E ++SNASCTTNCLAP+AKV+HD FGI++G MT
Sbjct: 120 LITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMT 179
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T HS T Q+ +D +D R RAA+ NI+P++TGAAKAV V+P L GKL G+A RVP
Sbjct: 180 TTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRVP 238
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T +VSVVDL V++EK +++ ++
Sbjct: 239 TPNVSVVDLVVQVEKPTITEQVNEVLQ 265
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 413 bits (1065), Expect = e-147
Identities = 128/263 (48%), Positives = 183/263 (69%), Gaps = 16/263 (6%)
Query: 5 KIGINGFGRIGRLVARVILQR--DDVELVA----------TYMFKYDSVHGQWKHHELKV 52
++ INGFGRIGRLV R+I +R D+E+VA ++ KYDSVH ++ +++
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPG-KVEY 60
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
++ +L+ K + VF +P ++PW + G ++V+ESTGVF +++KA HL+ GAKKVII
Sbjct: 61 TEN-SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119
Query: 113 SAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
+AP+K V+G NE++ KPE I+S ASCTTN +AP+ KV+H+KFGIV G++TTVHS
Sbjct: 120 TAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHS 179
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
T Q+ +D P KD R RAA+ NIIP++TGAAKAV V+P + GKL GMA RVPT D
Sbjct: 180 YTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDG 238
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
S+ DLTV +EK+ + +E+ A +K
Sbjct: 239 SITDLTVLVEKETTVEEVNAVMK 261
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 397 bits (1023), Expect = e-141
Identities = 127/265 (47%), Positives = 178/265 (67%), Gaps = 16/265 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQ--RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
V++ INGFGRIGR + R I++ R D+++VA ++ +YDSVHG++ E+
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPK-EV 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 110
+V D T+ G P+ V VRNP E+PW E + +E TG+FT +DKAA HL+ GAK+V
Sbjct: 61 EVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 111 IISAPSKDA-PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 169
I+SAP+ A V GVN ++ + ++SNASCTTNCLAP+A+V++D GI +G MTT+
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTI 179
Query: 170 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 229
HS T Q T+D KD RAA+ ++IP+STGAAKAVG VLP L GKL G+A RVPT
Sbjct: 180 HSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTP 238
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+VSVVDLT +++ + +E+ AI+
Sbjct: 239 NVSVVDLTFIAKRETTVEEVNNAIR 263
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 381 bits (980), Expect = e-134
Identities = 94/267 (35%), Positives = 152/267 (56%), Gaps = 18/267 (6%)
Query: 3 KVKIGINGFGRIGRLVARVILQR---DDVELVA----------TYMFKYDSVHGQWKHHE 49
V++ INGFGRIGR V R + + ++ +VA ++ KYD+ HG++ E
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAW-E 60
Query: 50 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
++ + D L G+ + V R+ + +PW E G + V++ TGV+ ++ AH+ GAKK
Sbjct: 61 VRQERD-QLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKK 119
Query: 110 VIISAPSKDA--PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
V+ S P + V GVN+++ + E IVSNASCTTNC+ P+ K++ D +GI G +T
Sbjct: 120 VLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVT 179
Query: 168 TVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVP 227
T+HS Q+ +D D R RAAS +IIP T A + + P N + +A RVP
Sbjct: 180 TIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRVP 238
Query: 228 TVDVSVVDLTVRLEKDASYDEIKAAIK 254
T++V+ +DL+V ++K +E+ ++
Sbjct: 239 TINVTAIDLSVTVKKPVKANEVNLLLQ 265
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 378 bits (973), Expect = e-133
Identities = 112/266 (42%), Positives = 161/266 (60%), Gaps = 18/266 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQ---RDDVELVA----------TYMFKYDSVHGQWKHHEL 50
+++ ING+GRIGR + R + D+E+VA ++ +YD+ HG++ +
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPG-TV 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 110
V ++ + V RNP ++PW + V+E TG FT K+KA AH+KGGAKKV
Sbjct: 61 SVNGS-YMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKV 119
Query: 111 IISAPSKDA--PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
IISAP V GVN K ++SNASCTTNCLAPL K ++DK G+ +GLMTT
Sbjct: 120 IISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTT 179
Query: 169 VHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 228
VH+ T Q D +D R R+A+ ++IP+ TGAA AVG VLP L+GKL G A RVPT
Sbjct: 180 VHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPT 238
Query: 229 VDVSVVDLTVRLEKDASYDEIKAAIK 254
++VS+VDL+ +++ + +E+ +K
Sbjct: 239 INVSIVDLSFVAKRNTTVEEVNGILK 264
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 305 bits (783), Expect = e-104
Identities = 59/261 (22%), Positives = 95/261 (36%), Gaps = 23/261 (8%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA------TYMFKYDSVHGQWKHHELKVKDDK 56
K+ ING+G IG+ VA + +DD+E++ + +V +K +++
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFE-ARLAVEKGYKLFVAIPDNER 60
Query: 57 TLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 116
LF + + V G I A+ VV+ K K K I+
Sbjct: 61 VKLFEDAGIPVEG-----TILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGE 115
Query: 117 KDA---PMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 173
K F + N + + V SC T L + I+ I + + V
Sbjct: 116 KAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVLVRRAA 174
Query: 174 ATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSV 233
GP A + N + + V V+P GK+ A VPT + +
Sbjct: 175 DPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTLMHM 227
Query: 234 VDLTVRLEKDASYDEIKAAIK 254
L V ++ D S D+I AIK
Sbjct: 228 HTLMVEVDGDVSRDDILEAIK 248
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 293 bits (753), Expect = e-100
Identities = 52/265 (19%), Positives = 93/265 (35%), Gaps = 39/265 (14%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKV 52
+ ING+G +G+ VA I Q+DD++++ + K ++
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAI------- 54
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
++ LF + + V G + A+ V++ T + + G K +
Sbjct: 55 -PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 113 SAPSKDAP--MFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 170
+ F N E + + SC T L K +HD FGI + V
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167
Query: 171 SITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVG-KVLPALNGKLTGMAFRVPTV 229
+ GP + IIP+ G V L+ + MA VPT
Sbjct: 168 RGADPAQVSKGPIN-----------AIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTT 216
Query: 230 DVSVVDLTVRLEKDASYDEIKAAIK 254
+ ++ V +E+ + D+I +
Sbjct: 217 LMHQHNVMVEVEETPTVDDIIDVFE 241
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 286 bits (733), Expect = 5e-97
Identities = 56/263 (21%), Positives = 90/263 (34%), Gaps = 36/263 (13%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA---------TYMFKYDSVHGQWKHHELKVK 53
KVK+G+NG+G IG+ VA + ++DD+EL+ Y K + E +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPR 61
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
+K G + + +V++T + K G K +
Sbjct: 62 FEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110
Query: 114 APSKDAP--MFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 171
D FV N + N V SC T L I + V +M +
Sbjct: 111 GEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRRAA 169
Query: 172 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 231
K RG A + + V V+P + MAF VPT +
Sbjct: 170 DPNDTK----------RGPINAIKPTVEVPSHHGPDVQTVIP---INIETMAFVVPTTLM 216
Query: 232 SVVDLTVRLEKDASYDEIKAAIK 254
V + V L+K + D++ +
Sbjct: 217 HVHSVMVELKKPLTKDDVIDIFE 239
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 207 bits (527), Expect = 7e-66
Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 17/254 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVEL--VATYMFKYDSVHGQWKHHELKVKDDKTLLFG 61
V + +NG+G IG+ VA I+++ D++L VA Y++ + + V F
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFE 61
Query: 62 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPM 121
E + V G + ++ VV++T +L+ + +
Sbjct: 62 ESGIPVAG-----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVAD 116
Query: 122 FVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD 180
N + + SC T L ++ + + T V ++
Sbjct: 117 ISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKK 176
Query: 181 GPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRL 240
GP +PS AK V V+ N + MA PT + + + + L
Sbjct: 177 GPI-----NSLVPDPATVPSHH--AKDVNSVIR--NLDIATMAVIAPTTLMHMHFINITL 227
Query: 241 EKDASYDEIKAAIK 254
+ +I + ++
Sbjct: 228 KDKVEKKDILSVLE 241
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3
PDB: 1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 50.7 bits (121), Expect = 1e-07
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
M +++ I G+G +GR V ++I ++ D++LV
Sbjct: 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVG 32
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 48.7 bits (116), Expect = 5e-07
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
K++ I G+G IGR + + + D E+
Sbjct: 7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAG 38
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 44.9 bits (107), Expect = 1e-05
Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 58/232 (25%)
Query: 68 FGVRNPEEIPWAETGAEYVVESTGVFT-----------DKDKAAAHLKGGAKK--VIISA 114
V+ E+ E + + ST + A + K +++S
Sbjct: 48 DAVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSN 107
Query: 115 PS-----KDAPMFVVGVN----------ENEYKPELNIVSNASCTTNCLAPLAKVIHDKF 159
S D P+ +N + + +V N +CT ++ K + +
Sbjct: 108 ASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIA 167
Query: 160 GIVEGLMTTVHSIT-ATQKTVDGPSSKDWRGGRAASFNIIP--------SSTGAAKAVG- 209
+ ++TT+ +++ A + A NIIP + K G
Sbjct: 168 TKSKIIITTLQAVSGAGYNGISFM---------AIEGNIIPYIKGEEDKIAKELTKLNGK 218
Query: 210 ----KVLPALNGKLTGMAFRVPTVD---VSVVDLTVRLEKDASYDEIKAAIK 254
+++PA N T + RVPT + + + + +EIK +K
Sbjct: 219 LENNQIIPA-NLDSTVTSIRVPTRVGHMGVI---NIVTNERINIEEIKKTLK 266
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 40.3 bits (95), Expect = 3e-04
Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 41/150 (27%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLL 59
G +++ + G GR+GR + I +R DVEL A + K S + D ++L
Sbjct: 19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK----------DASIL 68
Query: 60 FGEKPVTVFGVRNPEEI------------PWA---------ETGAEYVVESTGVFTDKDK 98
G + V +PE P A + +++ +TG F+ ++
Sbjct: 69 IGSDFLGVRITDDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTG-FSKTEE 127
Query: 99 AAAHLKGGAKKV-IISAPSKDAPMFVVGVN 127
A + AK I+ + + +GVN
Sbjct: 128 AQ--IADFAKYTTIVKSGN-----MSLGVN 150
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 40.0 bits (94), Expect = 3e-04
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVATY 34
M +K+G+ G G I + ++ + + E V +
Sbjct: 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAF 38
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 39.1 bits (92), Expect = 7e-04
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 28/135 (20%)
Query: 136 NIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSSKDWRGGRAAS 194
I++N +C+T C K I DKFG+ + T+ +++ A V A
Sbjct: 150 AIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPSM---------AIL 200
Query: 195 FNIIP--------SSTGAAKAVGKVLPAL----NGKLTGMAFRVPTVD---VSVVDLTVR 239
N+IP T + K +G + N K++ RV +D S+ V+
Sbjct: 201 DNLIPFIKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESI---FVK 257
Query: 240 LEKDASYDEIKAAIK 254
++ A +EIK +
Sbjct: 258 TKEGAEPEEIKEVMD 272
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 38.5 bits (90), Expect = 0.001
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVATY 34
+ K++IG+ G G I + V+ D L +
Sbjct: 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAW 37
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle
pigment, heme, bilirubin, NADH; 1.20A {Rattus
norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A
2h63_A*
Length = 294
Score = 38.3 bits (89), Expect = 0.001
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
GK + + G GR G + R + +
Sbjct: 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLN 36
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM
binding rossmann fold, structural genomics; HET: MSE
PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 38.5 bits (90), Expect = 0.001
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32
V++ + G GR G+ R I LV
Sbjct: 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVR 39
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 38.0 bits (89), Expect = 0.002
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVATYMFKYDSVHGQW------KHHELKVK 53
M +KI I G GR+GR++ +L D LV GQ K + +
Sbjct: 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALT 64
Query: 54 DDKTLLFGEKPVTV-FGVRNPEEIPW-----AETGAEYVVESTGVFTDKDKAAAHLKGGA 107
DD + E + F PE + V+ +TG F++ KA L+
Sbjct: 65 DDIERVCAEADYLIDFT--LPEGTLVHLDAALRHDVKLVIGTTG-FSEPQKAQ--LRAAG 119
Query: 108 KKV-IISAPSKDAPMFVVGVN 127
+K+ ++ + + VGVN
Sbjct: 120 EKIALVFSAN-----MSVGVN 135
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics;
1.70A {Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 38.1 bits (89), Expect = 0.002
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
V + G GR ++A + + ++LV
Sbjct: 3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVT 34
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 37.4 bits (86), Expect = 0.002
Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 31/153 (20%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 64
+G+ G+G IG+ +A L+R+ E+ A + HE V+ L
Sbjct: 2 LVGLIGYGAIGKFLAE-WLERNGFEIAA--------ILDVRGEHEKMVRGIDEFL----- 47
Query: 65 VTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVV 124
+ + VE+ KD A LK G +++S + F+
Sbjct: 48 ---------------QREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLS 92
Query: 125 GVNENEYKPELNIV--SNASCTTNCLAPLAKVI 155
V E K + S A + + +++I
Sbjct: 93 RVREVCRKTGRRVYIASGAIGGLDAIFSASELI 125
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 37.8 bits (88), Expect = 0.002
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
+ K ++ I G+G +G + D++E+
Sbjct: 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHG 34
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 37.2 bits (87), Expect = 0.003
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
M +KI + G+G + + VAR+ + E+V
Sbjct: 1 MASMKILLIGYGAMNQRVARLA-EEKGHEIVG 31
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion,
hydrolase; HET: NAD; 2.3A {Flavobacterium
meningosepticum} PDB: 2ixb_A*
Length = 444
Score = 37.4 bits (86), Expect = 0.003
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
KV+I G G+ + +RDDVE+VA
Sbjct: 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVA 49
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 36.5 bits (85), Expect = 0.005
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32
++I + G GRIG + A I D+ELV
Sbjct: 4 TLRIALFGAGRIGHVHAANIAANPDLELVV 33
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 36.4 bits (85), Expect = 0.005
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVATYMFKYDSVHGQ-------WKHHELKV 52
+++ I G GR+GR + + L + V+L A + S+ G + V
Sbjct: 3 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 62
Query: 53 KDDKTLLFGEKPVTV-FGVRNPEEIPW-----AETGAEYVVESTGVFTDKDKAAAHLKGG 106
+ + + V + F PE + G V+ +TG F + K A ++
Sbjct: 63 QSSLDAVKDDFDVFIDFTR--PEGTLNHLAFCRQHGKGMVIGTTG-FDEAGKQA--IRDA 117
Query: 107 AKKV-IISAPSKDAPMFVVGVN 127
A + I+ A + F VGVN
Sbjct: 118 AADIAIVFAAN-----FSVGVN 134
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 36.6 bits (85), Expect = 0.005
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATY 34
M K++ G L EL +
Sbjct: 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVF 35
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 36.6 bits (85), Expect = 0.006
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVA 32
+ +K+G+ G G + +LQ D+ +VA
Sbjct: 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVA 35
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 35.8 bits (83), Expect = 0.009
Identities = 46/244 (18%), Positives = 79/244 (32%), Gaps = 67/244 (27%)
Query: 68 FGVRNPEEIPWAETGAEYVVESTG----------VFT--DKDKAAAHLKGGAKK--VIIS 113
+ ET + VV+ VF+ D D A K + ++S
Sbjct: 63 DAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEAGLAVVS 122
Query: 114 APS-----KDAPMFVVGVN---------------ENEYKPELNIVSNASCTTNCLAPLAK 153
KD P+ V VN K I+ ++C+T L K
Sbjct: 123 NAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLK 182
Query: 154 VIHDKFGIVEGL-MTTVHSITATQKTVDGPSSKDWRGGRAASFNIIP------------- 199
+ +KFG ++ L TT+ +I+ + G S D NI+P
Sbjct: 183 PLVEKFGPIDALTTTTLQAISGAGFSP-GVSGMD------ILDNIVPYISGEEDKLEWET 235
Query: 200 ----SSTGAAKAVGKVLPALNGKLTGMAFRVPTVD---VSVVDLTVRLEKD--ASYDEIK 250
A +P K++ RVP +D + ++R S +++K
Sbjct: 236 KKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECI---SLRFANRPAPSVEDVK 292
Query: 251 AAIK 254
++
Sbjct: 293 QCLR 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 49/301 (16%), Positives = 91/301 (30%), Gaps = 115/301 (38%)
Query: 18 VARVILQRDDVELVATYMF----------KYDSVH-GQWKHHELK----------VKDDK 56
A+ + R D TY F ++H G K ++ + D K
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 57 TL---LFGE--KPVTVFGVRNPEEI--------PWAETGAEY----VVESTGVFTDKDKA 99
+F E + T + R+ + + P A T E ++S G+
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 100 AAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPELNIVSNA-SCTTNCL--APLAKVIH 156
A H S +G EY A + + + L +V+
Sbjct: 1760 AGH----------S----------LG----EY--------AALASLADVMSIESLVEVVF 1787
Query: 157 ------------DKFGIVEGLMTTVH--------SITATQKTVDGPSSKDWRGG--RAAS 194
D+ G M ++ S A Q V+ + G +
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT--GWLVEIVN 1845
Query: 195 FNIIPSST----GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIK 250
+N + + G +A+ V LN ++ +D+ + L+K S +E++
Sbjct: 1846 YN-VENQQYVAAGDLRALDTVTNVLN------FIKLQKIDI------IELQKSLSLEEVE 1892
Query: 251 A 251
Sbjct: 1893 G 1893
Score = 33.5 bits (76), Expect = 0.077
Identities = 53/328 (16%), Positives = 92/328 (28%), Gaps = 132/328 (40%)
Query: 23 LQRDD-----VELVATYM-F-----------KYDSV-------------HGQWKH---HE 49
DD ELV ++ + ++D V G H +
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 50 LKVKDDKTL----------------------------LF-----GE-KPVTVFGVR-NPE 74
L ++D TL LF G + V +FG + N +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 75 EIPWAE------TGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVN- 127
+ + E T V + +A L +I +F G+N
Sbjct: 168 D-YFEELRDLYQTYHVLVGD----LIK--FSAETLSE-----LIRTTLDAEKVFTQGLNI 215
Query: 128 ----EN-EYKPELNIVSNA--SCTTNCLAPLA--KVIHDKFGIVEGLM------TTVHS- 171
EN P+ + + + SC + LA V G G + T HS
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 172 --ITATQKTVDGPSSKDWRGGRAASFNII--------------PSSTGAAKAVGKVLPAL 215
+TA + W + I P+++ + L
Sbjct: 276 GLVTAVAIA----ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 216 NGKLTGMAFRVPTVDVSVVDLT-VRLEK 242
G + M +S+ +LT +++
Sbjct: 332 EGVPSPM--------LSISNLTQEQVQD 351
Score = 31.2 bits (70), Expect = 0.36
Identities = 46/268 (17%), Positives = 81/268 (30%), Gaps = 91/268 (33%)
Query: 7 GINGFGRIGRLVARVILQRDDVE-------LVATYMFKYDSVHGQ--WKHHELK---VKD 54
G G + G + A I + D E T +F + V + + L ++D
Sbjct: 269 GATGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILED 326
Query: 55 DKTLLFGEK-PVTVFGVRN--PEEIPWAETGAEYVVESTGVFTDKDKAAA-HLKGGAKKV 110
E P + + N E++ + V T K L GAK +
Sbjct: 327 SLEN--NEGVPSPMLSISNLTQEQV-------QDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 111 IISAPSKD------------APMFVVGVNEN-----EYKPE-----LNIVSNASCTTNCL 148
++S P + AP G++++ E K + L + + ++ L
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPS---GLDQSRIPFSERKLKFSNRFLPV--ASPFHSHLL 432
Query: 149 AP-LAKVIHD--KFGI---VEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 202
P + D K + + + V+ T DG D R S +I
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYD------TFDG---SDL---RVLSGSISER-- 478
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVD 230
+ R+P V
Sbjct: 479 ----------------IVDCIIRLP-VK 489
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 35.4 bits (82), Expect = 0.014
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVATY 34
+ +K G+ FG G++ A I EL
Sbjct: 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIV 37
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 35.1 bits (81), Expect = 0.015
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIGRLV-ARVILQRDDVELVA 32
M + + I G G+I R I + + +LVA
Sbjct: 23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVA 55
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 35.1 bits (81), Expect = 0.015
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGFGRIGRLV-ARVILQRDDVELVA 32
+KI + G G I + V+ Q D+ELV
Sbjct: 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVL 32
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 34.9 bits (81), Expect = 0.016
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32
++IG+ G GRIG + A + DD L A
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYA 31
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine
biosynthesis, NADH binding specificity, TB structural
genomics consortium; HET: NAD PDC PG4; 2.30A
{Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Length = 245
Score = 34.8 bits (81), Expect = 0.017
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 4 VKIGINGF-GRIGRLVARVILQRDDVELVA 32
+++G+ G G++G + R + DD+ L A
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSA 30
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 35.1 bits (81), Expect = 0.017
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGFGRIGRL-VARVILQRDDVELVA 32
K++ GI G G G + +A + D ++VA
Sbjct: 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVA 32
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 34.2 bits (78), Expect = 0.025
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGE 62
+ + I G G IG+ + + + E + Y + G + E +V D + +
Sbjct: 12 HMTVLIIGMGNIGKKLVELG----NFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTV--- 64
Query: 63 KPVTVFGVRNPEEIPWA--ETGAEYVVESTGVFTDKDKAAAHLKGGAKK 109
V +E + Y++ ST F D+ K
Sbjct: 65 --VECASPEAVKEYSLQILKNPVNYIIISTSAFADEV-FRERFFSELKN 110
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 34.2 bits (79), Expect = 0.031
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVA 32
+K GI G G IG R + VE+VA
Sbjct: 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVA 53
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 33.8 bits (78), Expect = 0.039
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA 32
+ G+ G I R ++ E+V+
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVS 29
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 33.6 bits (78), Expect = 0.047
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 118 DAPMFVVGVNENEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGI 161
AP +V VN ++S+ L + +
Sbjct: 106 VAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDC 151
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 33.4 bits (77), Expect = 0.051
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVATY 34
++ I G GR+G AR ++ + V+LVA
Sbjct: 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAAC 40
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 33.5 bits (77), Expect = 0.055
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIGRL-VARVILQRDDVELVA 32
+ +K+GI G+G G + ++ D+ ++
Sbjct: 3 LDTIKVGILGYGLSGSVFHGPLLDVLDEYQISK 35
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 33.5 bits (77), Expect = 0.057
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIGR-LVARVILQRDDVELVA 32
K+K+G+ G+G + A +I+ +EL
Sbjct: 5 ADKIKVGLLGYGYASKTFHAPLIMGTPGLELAG 37
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 33.5 bits (77), Expect = 0.061
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVA 32
++IG+ G G IG+ I + E+VA
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVA 32
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 33.2 bits (77), Expect = 0.066
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 56 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115
L F + + V E +P + V+ S G + KA +GGA +++
Sbjct: 41 VRLAFRGEEIPV------EPLPEGPLPVDLVLASAGGGISRAKALVWAEGGA--LVVDNS 92
Query: 116 S-----KDAPMFVVGVNENEYKPELNIVSNASCTT-NCLAPLAKVIHDKFGI 161
S P+ V VN + I++N +CTT L +H F
Sbjct: 93 SAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTAILAMAL-WPLHRAFQA 143
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 32.7 bits (75), Expect = 0.095
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVAT 33
+KI + G R + + + +A
Sbjct: 2 SLKICVIGSSGHFRYALEGLDEECSITGIAP 32
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 32.2 bits (74), Expect = 0.12
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 13/115 (11%)
Query: 56 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115
FG T+ + E A + +V G + + G + I A
Sbjct: 43 AAPSFGGTTGTLQDAFDLE----ALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAA 98
Query: 116 S-----KDAPMFVVGVNENEYKPELN----IVSNASCTTNCLAPLAKVIHDKFGI 161
S DA + + VN++ LN +CT + + + +
Sbjct: 99 SSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLV 153
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 32.4 bits (74), Expect = 0.13
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATY 34
M +++ G L R L +
Sbjct: 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFH 57
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II,
dimeric dihydodiol dehydrogenase, structural genomics;
2.70A {Enterococcus faecalis}
Length = 330
Score = 31.9 bits (73), Expect = 0.15
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
+ K++ GI +I + + E+
Sbjct: 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRG 34
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 31.9 bits (73), Expect = 0.16
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
+G GRIG V R
Sbjct: 191 AMH-VGTVAAGRIGLAVLR 208
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 31.9 bits (73), Expect = 0.17
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 4 VKIGINGFGRIGRL-VARVILQRDDVELVATY 34
VK+G GFG+ ++ R+ +E+ +
Sbjct: 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIF 34
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 31.8 bits (73), Expect = 0.18
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
+ KV+ G+ ++ + + E+VA
Sbjct: 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVA 34
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 31.9 bits (73), Expect = 0.18
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGFGRIGRLVARVILQR-DDVELVA 32
K++ + G GRI + + D EL+
Sbjct: 13 KIRFALVGCGRIANNHFGALEKHADRAELID 43
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 31.4 bits (72), Expect = 0.21
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +IG+ G G+IGR +A
Sbjct: 171 GK-RIGVLGLGQIGRALAS 188
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 31.8 bits (73), Expect = 0.21
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 56 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115
K F + T+ + + + ++ G D G I A
Sbjct: 46 KAPSFAKNETTLKDATSID----DLKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAA 101
Query: 116 S-----KDAPMFVVGVNENEYKPELN----IVSNASCTTNCLAPLAKVIHDKFGI 161
S DA + + VN N K L +CT + + + + +
Sbjct: 102 SSLRMKDDAVIILDPVNLNVIKDALVNGTKNFIGGNCTVSLMLMALGGLFRENLV 156
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 31.4 bits (72), Expect = 0.22
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK ++GI G GRIG VA
Sbjct: 164 GK-RVGIIGLGRIGLAVAE 181
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 31.4 bits (72), Expect = 0.23
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 56 KTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAP 115
FG+ + + E + + V+ G + A + G K I A
Sbjct: 42 PAPNFGKDAGMLHDAFDIE----SLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAA 97
Query: 116 S-----KDAPMFVVGVNENEYKPEL----NIVSNASCTTNCLAPLAKVIHDKFGI 161
S K+A + + VN + + +CT + + ++++ +
Sbjct: 98 STLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYERGLV 152
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 31.0 bits (71), Expect = 0.24
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 1 MGKVKIGING-FGRIGRLVARVILQRDDVELVA 32
+K GI G GR+G+ + +V ELV
Sbjct: 10 HHHMKYGIVGYSGRMGQEIQKVF-SEKGHELVL 41
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 31.5 bits (72), Expect = 0.25
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G+ +GI G GR+G+ VA
Sbjct: 168 GET-LGIIGLGRVGQAVAL 185
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 31.4 bits (72), Expect = 0.25
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G+G IGR VA
Sbjct: 122 GKA-LGILGYGGIGRRVAH 139
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 31.4 bits (72), Expect = 0.25
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
+G G G IG +A
Sbjct: 145 NA-TVGFLGMGAIGLAMAD 162
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 31.4 bits (72), Expect = 0.25
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK IGI GFGRIG VA+
Sbjct: 142 GKT-IGIIGFGRIGYQVAK 159
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 31.4 bits (72), Expect = 0.26
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G GRIGR VA
Sbjct: 165 GKT-LGILGLGRIGREVAT 182
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 31.5 bits (72), Expect = 0.26
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G V +G G G I + +AR
Sbjct: 163 GHV-LGAVGLGAIQKEIAR 180
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 31.4 bits (72), Expect = 0.27
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD------VELVATYMFKYDSVHGQWKHHELKVKD 54
M +++I + G G +G V R+I + +++V L +
Sbjct: 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGV-----SDSRSYASGRNLDISS 56
Query: 55 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLK 104
+ ++ PE++ A+ +V+ T D + + +
Sbjct: 57 IISNKEKTGRISDRAFSGPEDL--MGEAADLLVDCTPASRDGVREYSLYR 104
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
NYSGXRC, 11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 31.1 bits (71), Expect = 0.28
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 3 KVKIGINGFGRIGR-LVARVILQRDDVELVATY 34
+ I + G+G +G+ A +I + L
Sbjct: 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVA 39
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 31.1 bits (71), Expect = 0.28
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK IG G GRIG+L+ +
Sbjct: 164 GKT-IGTVGAGRIGKLLLQ 181
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 31.1 bits (71), Expect = 0.28
Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK I G GRIG V
Sbjct: 164 GKT-IATIGAGRIGYRVLE 181
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 31.1 bits (71), Expect = 0.29
Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 2 GKVKIGINGFGRIGRLVARV 21
G+ +GI G+G+IG+LVA
Sbjct: 160 GQT-LGIFGYGKIGQLVAGY 178
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 31.0 bits (71), Expect = 0.29
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G+ K+ + G G IG V +
Sbjct: 124 GE-KVAVLGLGEIGTRVGK 141
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 31.0 bits (71), Expect = 0.32
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G+ ++GI G GRIGR +A
Sbjct: 173 GR-RLGIFGMGRIGRAIAT 190
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 31.1 bits (71), Expect = 0.34
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +G+ G GRIG+LVA+
Sbjct: 142 GKT-VGVVGLGRIGQLVAQ 159
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 30.8 bits (70), Expect = 0.35
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32
+++IG+ G I R V+R I + +
Sbjct: 6 QIRIGVMGCADIARKVSRAIHLAPNATISG 35
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 31.0 bits (71), Expect = 0.36
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G G IG+ +AR
Sbjct: 146 GKK-VGILGMGAIGKAIAR 163
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 30.6 bits (70), Expect = 0.39
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK IGI G GRIG+ +A+
Sbjct: 150 GK-TIGIIGLGRIGQAIAK 167
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 30.6 bits (70), Expect = 0.40
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 117 KDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 161
D P+ V VN + I++ +C+T + + + K+G+
Sbjct: 102 PDVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGL 146
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 30.6 bits (70), Expect = 0.42
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK IGI GFGRIG V
Sbjct: 142 GKT-IGIVGFGRIGTKVGI 159
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE
AMP; 1.79A {Escherichia coli k-12}
Length = 140
Score = 29.8 bits (68), Expect = 0.44
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 8 INGFGRIGRLVARVILQRDDVELVA 32
+ G+GR+G L+ L D+ LV
Sbjct: 12 LVGYGRVGSLLGEK-LLASDIPLVV 35
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.1 bits (68), Expect = 0.50
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 8 INGFGRIGRLVARVILQRDDVELVA 32
I G GRIG + R +
Sbjct: 44 ILGMGRIGTGAYDELRARYGKISLG 68
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.90A {Thermoplasma
volcanium GSS1} PDB: 3jsa_A*
Length = 331
Score = 30.3 bits (69), Expect = 0.51
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD 27
M + + I G G +G + R+I ++
Sbjct: 4 MKTINLSIFGLGNVGLNLLRIIRSFNE 30
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 30.2 bits (69), Expect = 0.55
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
+GI G GRIG+ +AR
Sbjct: 155 QS-TVGIIGLGRIGQAIAR 172
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 30.2 bits (69), Expect = 0.58
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
K +GI GFG IG+ +A+
Sbjct: 146 NK-TLGIYGFGSIGQALAK 163
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 30.2 bits (69), Expect = 0.62
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G +G+ G GRIG+ VA+
Sbjct: 144 GL-TLGLVGMGRIGQAVAK 161
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 29.9 bits (67), Expect = 0.71
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTL 58
+K+ I G G IGR +A + DV + + V ++ + L
Sbjct: 16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKL 71
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 29.7 bits (67), Expect = 0.80
Identities = 4/31 (12%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGFGRIGRL-VARVILQRDDVELVA 32
+ I G G+ + + A
Sbjct: 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEA 113
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 29.6 bits (67), Expect = 0.88
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 4 VKIGINGFGRIGRLV-ARVILQRDDVELVATY 34
+ GFG+ +L R D VA
Sbjct: 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHI 34
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker,
ancillary protein KEFF; potassium channel regulation,
domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia
coli} PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 29.7 bits (67), Expect = 0.96
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 8 INGFGRIGRLVARVILQRDDVELVA 32
I GFGR G++ R +L V++V
Sbjct: 9 IAGFGRFGQITGR-LLLSSGVKMVV 32
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 29.4 bits (67), Expect = 1.0
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 117 KDAPMFVVGVNEN---EYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 161
D P+ V VN E++ NI++N +C+T + K I+D GI
Sbjct: 103 YDIPLVVPEVNPEAIAEFRNR-NIIANPNCSTIQMLVALKPIYDAVGI 149
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 29.2 bits (66), Expect = 1.3
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 2 GKVKIGINGFGRIGRLVARV 21
+ G+ G G++G + V
Sbjct: 116 ERT-YGVVGAGQVGGRLVEV 134
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase;
1.70A {Thermus thermophilus}
Length = 332
Score = 29.1 bits (66), Expect = 1.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD 27
M +KI + G G +G ++L+R +
Sbjct: 1 MEALKIALLGGGTVGSAFYNLVLERAE 27
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 28.6 bits (65), Expect = 1.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 136 NIVSNASCTTNCLAPLAKVIHDKFGI 161
I++N +CTT P+ KV+HD+ +
Sbjct: 122 GIIANPNCTTMAAMPVLKVLHDEARL 147
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta,
cisplatin, platinum, chaperone, ION transport,
metal-binding, metal transport; HET: TCE; 1.60A {Homo
sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B
1fe0_A* 3iwx_A 3cjk_A
Length = 68
Score = 26.6 bits (59), Expect = 1.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
G A+AV +VL L G D+ + + V +E + S D + A +K
Sbjct: 14 GCAEAVSRVLNKLGGV---------KYDIDLPNKKVCIESEHSMDTLLATLK 56
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Length = 393
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 7/39 (17%)
Query: 1 MGKVKIGINGFGRIG-------RLVARVILQRDDVELVA 32
M + IG+ G G +G V V + LV
Sbjct: 23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVH 61
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 28.4 bits (64), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 6 IGINGFGRIGRLVAR 20
+G+ G GRIG VA
Sbjct: 144 LGVIGTGRIGSRVAM 158
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP
binding binding protein; HET: TLO NAP; 1.71A
{Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A*
3rc7_A* 3rc9_A*
Length = 350
Score = 28.4 bits (64), Expect = 2.2
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 1 MGKVKIGINGFGRIG-RLVARVILQRDDVELVA 32
+++G+ G I R + E+ A
Sbjct: 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTA 57
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural
genomics, midwest cente structural genomics; 2.15A
{Thiobacillus denitrificans}
Length = 444
Score = 28.3 bits (64), Expect = 2.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDD 27
M + +G+ G G +G V+ + +
Sbjct: 8 MKPIHVGLLGLGTVGGGTLTVLRRNAE 34
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.3 bits (62), Expect = 2.6
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELV 31
MGK + + G G + + V + DD+ +
Sbjct: 22 MGK-NVLLLGSGFVAQPVIDTLAANDDINVT 51
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 28.4 bits (64), Expect = 2.6
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 2 GKVKIGINGFGRIGRLVARV 21
+ IGI G G +G +
Sbjct: 119 DRT-IGIVGVGNVGSRLQTR 137
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury
coordination, metal transport; 1.02A {Saccharomyces
cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A
2ggp_A 3k7r_A
Length = 73
Score = 26.3 bits (58), Expect = 2.6
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
G + AV KVL L V +D+S+ V + YD I IK
Sbjct: 17 GCSGAVNKVLTKLEPD-------VSKIDISLEKQLVDVYTTLPYDFILEKIK 61
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 28.0 bits (63), Expect = 3.0
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 6 IGINGFGRIGRLVAR 20
+G+ G G IG++ +
Sbjct: 149 VGVVGTGHIGQVFMQ 163
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 26.7 bits (59), Expect = 3.5
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA 32
I + G G+IG+++A ++ + +
Sbjct: 7 NICVVGAGKIGQMIAALLKTSSNYSVTV 34
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 28.0 bits (63), Expect = 3.8
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK +GI G+G IG V
Sbjct: 156 GK-TLGIVGYGNIGSQVGN 173
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain
ATU1203, ontario centre for ST proteomics, structural
genomics; NMR {Agrobacterium tumefaciens str}
Length = 85
Score = 26.3 bits (58), Expect = 3.8
Identities = 6/50 (12%), Positives = 10/50 (20%), Gaps = 8/50 (16%)
Query: 205 AKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
A + + V TV + + I I
Sbjct: 37 AGVIKGAIEKTVP--------GAAVHADPASRTVVVGGVSDAAHIAEIIT 78
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.9 bits (60), Expect = 4.5
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVA 32
+ + + G GR G + + L R E++A
Sbjct: 4 IKNKQFAVIGLGRFGGSIVK-ELHRMGHEVLA 34
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 26.3 bits (58), Expect = 4.7
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
AV K L + G V V+V + D V + E++A ++
Sbjct: 31 SCVDAVRKSLQGVAG--------VQDVEVHLEDQMVLVHTTLPSQEVQALLE 74
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 27.6 bits (62), Expect = 4.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
GK K+GI G+G IG +
Sbjct: 145 GK-KLGIIGYGHIGTQLGI 162
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 27.2 bits (61), Expect = 4.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 6 IGINGFGRIGRLVAR 20
+G+ G GRIGR+ A+
Sbjct: 149 VGVVGLGRIGRVAAQ 163
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 27.3 bits (61), Expect = 5.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 1 MGKVKIGINGFGRIGR-LVARVILQRDDV-ELVA 32
+ K+++GI G G R L + + E+ A
Sbjct: 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITA 49
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 27.1 bits (61), Expect = 5.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 2 GKVKIGINGFGRIGRLVARVILQRDD 27
G +KI I GFG +G+ VA +++++ +
Sbjct: 1 GMIKIAIVGFGTVGQGVAELLIRKRE 26
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis,
chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB:
2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Length = 64
Score = 25.4 bits (56), Expect = 5.6
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 205 AKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
A+AV K + + TV V + V + ++++ AI
Sbjct: 16 AEAVTKAVQNEDA--------QATVQVDLTSKKVTITSALGEEQLRTAIA 57
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 27.2 bits (61), Expect = 5.6
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 6 IGINGFGRIGRLVAR 20
+G+ G G IG++ +
Sbjct: 148 VGVMGTGHIGQVAIK 162
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella
melitensis biovar abortus 230ORGANISM_TAXID} PDB:
3upy_A*
Length = 446
Score = 27.1 bits (59), Expect = 7.6
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA 32
++IG+ G G +G + + + +E+ A
Sbjct: 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGA 52
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 26.8 bits (59), Expect = 7.9
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 5 KIGINGFGRIGRLVAR 20
+ + G GR+G VAR
Sbjct: 157 NVAVLGLGRVGMSVAR 172
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 26.7 bits (60), Expect = 8.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 81 TGAEYVVESTGVFTDKDKAAAHLKGG 106
TG Y + G+FT K LK G
Sbjct: 228 TGQTYNADRLGIFTPKQVDRTELKCG 253
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.2 bits (58), Expect = 8.6
Identities = 2/23 (8%), Positives = 5/23 (21%), Gaps = 1/23 (4%)
Query: 10 GFGRIGRLVARVILQRDDVELVA 32
G + L + +
Sbjct: 10 GHSILAINTIL-QLNQRGQNVTV 31
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 26.5 bits (59), Expect = 9.0
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 2 GKVKIGINGFGRIGRLVAR 20
G+ ++ I G G+IG+ +A
Sbjct: 137 GQ-QLLIYGTGQIGQSLAA 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 26.7 bits (60), Expect = 9.6
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 81 TGAEYVVESTGVFTDKDKAAAHLKGG 106
TG EY V G T K L G
Sbjct: 230 TGKEYEVTEVGAQTPKMTKFDKLSAG 255
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 26.0 bits (57), Expect = 9.7
Identities = 2/12 (16%), Positives = 6/12 (50%)
Query: 241 EKDASYDEIKAA 252
+ A+ ++K
Sbjct: 19 DPSANISDLKQK 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,979,231
Number of extensions: 243758
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 156
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)