RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025368
(254 letters)
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 193 bits (491), Expect = 3e-63
Identities = 92/112 (82%), Positives = 98/112 (87%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 202
CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A NIIP+ST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
GAAKAVGKV+P LNGKLTGMAFRVPT +VSVVDLT RLEK A YD+IK +K
Sbjct: 61 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVK 112
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 192 bits (490), Expect = 6e-63
Identities = 82/164 (50%), Positives = 107/164 (65%), Gaps = 13/164 (7%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELK 51
KVK+G+NGFGRIGRLV R V++VA YMF+YDS HG++ H +K
Sbjct: 1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 59
Query: 52 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVI 111
++ K L+ P+T+F R+P +I W + GAEYVVESTGVFT +KA AHL+GGAK+VI
Sbjct: 60 AENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 118
Query: 112 ISAPSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVI 155
ISAPS DAPMFV+GVN +Y L I+SNAS + ++
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 186 bits (473), Expect = 2e-60
Identities = 86/168 (51%), Positives = 106/168 (63%), Gaps = 14/168 (8%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKVK 53
KIGINGFGRIGRLV R L+ ++VA YMFKYDS HG +K E+K +
Sbjct: 2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKAE 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
D L+ K +TVF PE IPW++ GAEY+VESTGVFT +KA+AH KGGAKKVIIS
Sbjct: 60 DGA-LVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 114 APSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 161
APS DAPMFV GVN +Y ++ +VSNAS + +I +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 184 bits (468), Expect = 9e-60
Identities = 70/112 (62%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 202
CTTNCLAP AKV+H++FGIV G+MTTVHS T Q+ +D P KD R RAA+ +IIP++T
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTT 59
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
GAAKAV VLP L GKL GMA RVPT +VSVVDL LEK+ + +E+ AA+K
Sbjct: 60 GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALK 111
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 183 bits (465), Expect = 4e-59
Identities = 65/171 (38%), Positives = 93/171 (54%), Gaps = 17/171 (9%)
Query: 5 KIGINGFGRIGRLVARVILQRDD--VELVA----------TYMFKYDSVHGQWKHHELKV 52
K+ INGFGRIGR R R D +++V +++ KYDS+ G +
Sbjct: 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTA 61
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
D + G+ + V RNP +PW + G + V+E TGVF D+D A HL+ GAKKV+I
Sbjct: 62 GDSAISVDGKV-IKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120
Query: 113 SAPSK-DAPMFVVGVNENEYKPELNIVSNASCT---TNCLAPLAKVIHDKF 159
+AP K D P +VVGVNE Y I+SNAS + + LA ++ +K+
Sbjct: 121 TAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 180 bits (457), Expect = 5e-58
Identities = 63/112 (56%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 202
CTTNCLAP KV+ KFGI++G MTT HS T Q+ +D +D R RAA NI+P+ST
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
GAAKAV VLP L GKL G+A RVPT +VSVVDL V++ K +E+ AA +
Sbjct: 60 GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFR 111
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 177 bits (449), Expect = 8e-57
Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
+K+GINGFGRIGR+V R +R D+E+VA YM KYDS HG++ ++VK
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDG-TVEVK 60
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
D L+ K + V R+P + W E G + V E+TG+F + A H+ GAKKV+++
Sbjct: 61 DGH-LIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMT 119
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIH 156
PSKD PMFV G N ++Y + +IVSNAS T + +I
Sbjct: 120 GPSKDNTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 176 bits (447), Expect = 2e-56
Identities = 64/170 (37%), Positives = 103/170 (60%), Gaps = 15/170 (8%)
Query: 5 KIGINGFGRIGRLVARVILQRD--DVELVA----------TYMFKYDSVHGQWKHHELKV 52
++ INGFGRIGRLV R+I +R D+E+VA ++ KYDSVH ++ +++
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPG-KVEY 60
Query: 53 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVII 112
++ +L+ K + VF +P ++PW + G ++V+ESTGVF +++KA HL+ GAKKVII
Sbjct: 61 TEN-SLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119
Query: 113 SAPSKDAPM-FVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 161
+AP+K + V+G NE++ KPE I+S AS + + +
Sbjct: 120 TAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 172 bits (438), Expect = 4e-55
Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVK 53
VK+GINGFGRIGR V R L+ D+E+VA ++ KYDSVHG+
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAE--VSV 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
+ L+ K + V R+PE + W E G + VVESTG FT ++ AA HL+ GAKKVIIS
Sbjct: 60 NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 114 APS-KDAPMFVVGVNENEYKPE-LNIVSNASCTTNCLAPLAKVIHDKFGIVEGL 165
AP+ + V+GVN+++Y P+ +++SNAS T + + + +GL
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 167 bits (425), Expect = 3e-53
Identities = 78/169 (46%), Positives = 102/169 (60%), Gaps = 17/169 (10%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA-----------TYMFKYDSVHGQWKHHELKVK 53
K+GINGFGRIGRLV R R D+E+VA Y+ KYDSVHGQ+
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE--VTH 59
Query: 54 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIIS 113
D LL GEK V+VF ++P +IPW + + V ESTGVF K+ A++HLKGGAKKVI+S
Sbjct: 60 ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119
Query: 114 APSKD-APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGI 161
AP KD P++V+G+N ++Y + IVSNAS +V+ I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 166 bits (422), Expect = 9e-53
Identities = 57/113 (50%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 142 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 201
SCTTNCLAPL K ++DK G+ +GLMTTVH+ T Q D +D R R+A+ ++IP+
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59
Query: 202 TGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
TGAA AVG VLP L+GKL G A RVPT++VS+VDL+ +++ + +E+ +K
Sbjct: 60 TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILK 112
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 165 bits (418), Expect = 4e-52
Identities = 58/112 (51%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 202
CTTN LAP+ KV+ + FG+ + LMTTVHS T Q+ +D P KD R RAA+ NIIP++T
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59
Query: 203 GAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
GAAKA VLP+L G+ GMA RVPT S+ D+T L+++ + +E+ AA+K
Sbjct: 60 GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALK 111
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 165 bits (419), Expect = 5e-52
Identities = 67/183 (36%), Positives = 102/183 (55%), Gaps = 24/183 (13%)
Query: 3 KVKIGINGFGRIGRLVARVILQR----DDVELVA-----------TYMFKYDSVHGQWKH 47
+K+GINGFGRIGR+V + + + ++++VA Y +YD+VHG++K+
Sbjct: 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 48 -------HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAA 100
KDD ++ G + + V RNP ++PW + G EYV+ESTG+FT K A
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 101 AHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKP-ELNIVSNASCTTNCLAPLAKVIHDK 158
HL+GGA+KV+ISAP+ A V+GVN +EY P E ++VSNA + ++
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181
Query: 159 FGI 161
Sbjct: 182 ASK 184
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 164 bits (417), Expect = 7e-52
Identities = 29/175 (16%), Positives = 66/175 (37%), Gaps = 11/175 (6%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVA--TYMFKYDSVHGQWKHHELKV-KDDKTLLF 60
+ ING+G +G+ VA I Q+DD++++ +++ K ++L V ++ LF
Sbjct: 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLF 61
Query: 61 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAP 120
+ + V G + A+ V++ T + + G K + +
Sbjct: 62 EKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKHEDI 116
Query: 121 --MFVVGVNENEY-KPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
F N E + V + + + ++ DK+ + ++ +
Sbjct: 117 GLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKAMNIL 171
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 160 bits (406), Expect = 2e-50
Identities = 79/114 (69%), Positives = 91/114 (79%), Gaps = 1/114 (0%)
Query: 142 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPS 200
SCTTNCLAP+ V + + FG+ GLMTT+HS TATQKTVDG S KDWRGGRAA+ NIIPS
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 201 STGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
+TGAAKAVG V+P+ GKLTGM+FRVPT DVSVVDLT +D S EI AA+K
Sbjct: 61 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALK 114
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 150 bits (380), Expect = 2e-46
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 5/168 (2%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGE 62
KVK+G+NG+G IG+ VA + ++DD+EL+ + K ++ EL +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIG--ITKTKPDFEAYRAKELGIPVYAASEEFI 59
Query: 63 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDA--P 120
G + + +V++T + K G K + D
Sbjct: 60 PRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEV 119
Query: 121 MFVVGVNENEY-KPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 167
FV N V + + + ++ I + +
Sbjct: 120 SFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 149 bits (376), Expect = 8e-46
Identities = 74/169 (43%), Positives = 101/169 (59%), Gaps = 18/169 (10%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVA----------TYMFKYDSVHGQWKHHELKVKD 54
K+GINGFGRIGR V R++ R VE+ ++ KYDS++ ++ D
Sbjct: 2 KVGINGFGRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGE--VAYD 58
Query: 55 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISA 114
D+ L K + V++P+EIPWAE G V+ESTGVFTD DKA AHL+GGAKKVII+A
Sbjct: 59 DQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITA 118
Query: 115 PSKDAPM-FVVGVNENEYKP-ELNIVSNASCT---TNCLAPLAKVIHDK 158
P+K + V+GVN Y P +I+SNAS N +A L +++ K
Sbjct: 119 PAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 147 bits (372), Expect = 3e-45
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 4 VKIGINGFGRIGRLVARVILQR---DDVELVA----------TYMFKYDSVHGQWKHHEL 50
+++ ING+GRIGR + R + D+E+VA ++ +YD+ HG++ +
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGT-V 60
Query: 51 KVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKV 110
V ++ G+K + V RNP ++PW + V+E TG FT K+KA AH+KGGAKKV
Sbjct: 61 SVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKV 119
Query: 111 IISAPSKD--APMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 168
IISAP V GVN K ++SNA +++G ++ T
Sbjct: 120 IISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLDT 165
Query: 169 VHSITA 174
++ +
Sbjct: 166 TVALMS 171
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 136 bits (344), Expect = 8e-41
Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 25/182 (13%)
Query: 4 VKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHH--ELKVKDDKTLLFG 61
V + +NG+G IG+ VA I+++ D++LV + + V F
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFE 61
Query: 62 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDA-- 119
E + V + ++ VV++T +L+ + I K
Sbjct: 62 ESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGEKAEVA 115
Query: 120 -PMFVVGVNENEY--KPELNIVSNASCTTNCLAPL------------AKVIHDKFGIVEG 164
F N NE K + +VS + + + ++ ++ GI++G
Sbjct: 116 DISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRITNESLGILKG 175
Query: 165 LM 166
+
Sbjct: 176 YL 177
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 123 bits (309), Expect = 9e-36
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 142 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 201
SC T L K +HD FGI + V + + IIP+
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49
Query: 202 TGAAKAVGK-VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
G V L+ + MA VPT + ++ V +E+ + D+I +
Sbjct: 50 PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE 103
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 121 bits (306), Expect = 2e-35
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSST 202
C T L ++ + + T V + + + G S P++
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51
Query: 203 GAA--KAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
+ K V V+ L + MA PT + + + + L+ +I + ++
Sbjct: 52 PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLE 103
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 46.8 bits (111), Expect = 3e-07
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 142 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSS 201
SC T L I + V ++ D R I P+
Sbjct: 1 SCNTTGLVRTLSAIREYADYVY--------AVMIRRAAD-----PNDTKRGPINAIKPTV 47
Query: 202 TGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
+ V + + MAF VPT + V + V L+K + D++ +
Sbjct: 48 EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFE 100
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 44.5 bits (104), Expect = 2e-06
Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLF 60
M +++ I G+G +GR V ++I ++ D++LV + + + D
Sbjct: 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT----KTPVFDVADVDKHA 56
Query: 61 GEKPVTVFGVRNPEEIPWAETGAEY---VVESTGVFTDKDKAAAHL----KGGAKKVIIS 113
+ V + + +IP V++ D + + ++S
Sbjct: 57 DDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVS 116
Query: 114 APSKDAPMFVVGV 126
+
Sbjct: 117 TGRNPDFTASSQI 129
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 38.8 bits (89), Expect = 2e-04
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 3 KVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHH 48
+++IG+ G I R V+R I + + + +
Sbjct: 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATAN 46
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 38.1 bits (88), Expect = 3e-04
Identities = 28/162 (17%), Positives = 48/162 (29%), Gaps = 25/162 (15%)
Query: 3 KVKIGINGFGRIGR-LVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFG 61
K+K+ I G G IG L+ +V+ +E+ A S +
Sbjct: 4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGV--- 60
Query: 62 EKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKA---AAHLKGGAKKVIISAPSKD 118
++V ++T G ++I P+
Sbjct: 61 ----------EGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPG--IRLIDLTPAAI 108
Query: 119 APMFVVGVNENE--YKPELNIVSNASCTT----NCLAPLAKV 154
P V VN E K +N+V+ A LA ++
Sbjct: 109 GPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 37.7 bits (86), Expect = 5e-04
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 3 KVKIGINGFGRIG-RLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDD 55
K++IG+ G G I + V+ D L + + + D
Sbjct: 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADS 54
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 37.5 bits (86), Expect = 5e-04
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLL 59
GK + + G GR G + R + + + + S E++ + L
Sbjct: 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLN--LIGFVSRRELGSLDEVRQISLEDAL 61
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 36.8 bits (84), Expect = 8e-04
Identities = 19/168 (11%), Positives = 45/168 (26%), Gaps = 12/168 (7%)
Query: 4 VKIGING-FGRIGRLVARVILQRDDVELVATYMF-----KYDSVHGQWKHHELKVKDDKT 57
++ GI G G G + R++ + ++ K + + + + + D
Sbjct: 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 61
Query: 58 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK 117
+ V + + G D + +
Sbjct: 62 KVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYRE----WYGKELSGY 117
Query: 118 DAPMFVVGVNENEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 163
+ V G+ E + +V N + ++ FG+ E
Sbjct: 118 ENIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 36.1 bits (82), Expect = 0.002
Identities = 17/178 (9%), Positives = 46/178 (25%), Gaps = 9/178 (5%)
Query: 3 KVKIGING-FGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFG 61
+V+I + G G G + R++ + + L +D L+
Sbjct: 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAV 64
Query: 62 EKP------VTVFGVRNPEEIPWAETGAEYVVES-TGVFTDKDKAAAHLKGGAKKVIISA 114
+ + + + + + + +
Sbjct: 65 KDADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPE 124
Query: 115 PSKDAPMFVVGVNENEYKPELNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 172
++A + V NE + +V+N + ++ G+ E +
Sbjct: 125 LQQEAVYGLTEVLRNEIR-NARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQYQPL 181
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 35.8 bits (81), Expect = 0.002
Identities = 21/172 (12%), Positives = 42/172 (24%), Gaps = 13/172 (7%)
Query: 5 KIGING-FGRIGRLVARVILQRDDVELVA-------TYMFKYDSVHGQWKHHELKVKDDK 56
I G G G + + + + + A K S + +
Sbjct: 3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQP 62
Query: 57 TLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTDKDKAAAHLKGGAKK---VIIS 113
+ V V + A +++ V D A +
Sbjct: 63 MSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTH 122
Query: 114 APSKDAPMFVVGVNENEYK--PELNIVSNASCTTNCLAPLAKVIHDKFGIVE 163
+ V G+ E N+++ A + + +FG E
Sbjct: 123 QYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 35.2 bits (80), Expect = 0.003
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 3 KVKIGINGF-GRIGRLVARVILQRDDVELVA 32
+++ I G GR+GR + + L + V+L A
Sbjct: 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGA 34
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 34.3 bits (78), Expect = 0.005
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 5 KIGINGF-GRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHE 49
++G+ G G++G + R + DD+ L A + E
Sbjct: 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTE 46
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 33.0 bits (74), Expect = 0.018
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQR--DDVELVATYMFKYDSVHGQWKHH 48
+ K+++GI G G R + L+ E+ A K
Sbjct: 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV 50
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 31.2 bits (69), Expect = 0.078
Identities = 4/33 (12%), Positives = 8/33 (24%), Gaps = 1/33 (3%)
Query: 3 KVKIGINGFGRIGR-LVARVILQRDDVELVATY 34
+ I G G+ + + A
Sbjct: 33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALV 65
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 29.8 bits (66), Expect = 0.24
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 175
C+T + + + K+G+ +++T +++
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGA 33
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 29.7 bits (66), Expect = 0.30
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 175
CT + + ++++ + T + +
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASGA 34
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase
VCA1048 {Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 28.6 bits (63), Expect = 0.43
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 5 KIGINGFGRIG-RLVARVILQRDDVELVA 32
KI + G G I + V+ Q D+ELV
Sbjct: 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVL 31
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 28.2 bits (62), Expect = 0.73
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 143 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITAT 175
CT + + + + + T + +
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASGG 34
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 27.9 bits (61), Expect = 0.82
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 13/131 (9%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP 64
++G GFG + + +A + R + + S + + V + P
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRG---VEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCP 58
Query: 65 VTVFGVRNPEEIPWAETGA-----EYVVESTGVFTDKDKAAAHLKG-GAKKVIISAPSKD 118
V + V + A YV + A++ ++ G I +
Sbjct: 59 VVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVRR 118
Query: 119 A----PMFVVG 125
+ G
Sbjct: 119 KGADIRIIASG 129
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 27.3 bits (60), Expect = 0.96
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 5 KIGINGFGRIGRLVARVILQRDD 27
+ I G G IG+ + +
Sbjct: 4 TVLIIGMGNIGKKLVELGNFEKI 26
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 132
Score = 27.2 bits (59), Expect = 1.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 5 KIGINGFGRIGRLVARVILQRD 26
I I G GR+G +A+ + ++
Sbjct: 2 YIIIAGIGRVGYTLAKSLSEKG 23
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 26.5 bits (58), Expect = 1.7
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 5 KIGINGFGRIGRLVAR 20
+ G R +A+
Sbjct: 100 NLITYATGGRPRNIAK 115
>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 168
Score = 26.5 bits (58), Expect = 2.2
Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 3 KVKIGINGFGRIGRLVARVIL-QRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFG 61
V + + G G +G +L + + + + + L V D
Sbjct: 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALA 63
Query: 62 EKPVTVFGVRNPEEIPWAETGAEYVVESTG 91
+ + +V++T
Sbjct: 64 ASTTKTLPLDDLIAHLKTSPKPVILVDNTS 93
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 26.4 bits (57), Expect = 2.3
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 5 KIGINGFGRIGRLVARVILQRD 26
+ + G GR G + + + +
Sbjct: 2 QFAVIGLGRFGGSIVKELHRMG 23
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 26.3 bits (57), Expect = 2.4
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 136 NIVSNASCTTNCLAPLAKVIHD 157
++S+ + L + H
Sbjct: 122 FLLSSPAALNAVLLGELLIKHY 143
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 200
Score = 26.4 bits (58), Expect = 2.9
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 20/76 (26%)
Query: 150 PLAKVIHDKFGIVEGLMTTVH-----------SITATQKTVDGPSSKDWR-------GGR 191
L +H +FG+ + AT+ + G S+ + + G
Sbjct: 108 RLEAAVHLRFGLPPHASRELKDRIKKADTVAAFFEATE--LAGFSTAEAQKFFGLPRGIT 165
Query: 192 AASFNIIPSSTGAAKA 207
F+IIP + A+
Sbjct: 166 RDMFDIIPLPSTEAQR 181
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 26.3 bits (57), Expect = 3.3
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 22 ILQRDDVELVATYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIP-WAE 80
IL + + V + + H + + + V G N E A
Sbjct: 130 ILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISAS 189
Query: 81 TGAEYVVESTGVFTDKD--KAAAHLKGGAKK 109
GA +V T +F +D ++ +K
Sbjct: 190 HGANIIVAGTSIFNAEDPKYVIDTMRVSVQK 220
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 26.3 bits (56), Expect = 3.4
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKV 52
KIG+ G G IG +A L+R L+ + + +
Sbjct: 2 KIGVVGLGLIGASLAGD-LRRRGHYLIGVSRQQSTCEKAVERQLVDEA 48
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 25.8 bits (56), Expect = 3.6
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 5 KIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQW 45
K+G G GR+G A L DV+ +A D G+
Sbjct: 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEA 42
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 26.0 bits (56), Expect = 3.8
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 1 MGKVKIGINGFGRIGRLVARVILQRDDVELVATYMFKYDSVHGQWKHHELKVKDD 55
+ K+ I + G+G++G L AR + + + + V
Sbjct: 9 IHKIVI-VGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVP 62
>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 24.7 bits (54), Expect = 4.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 219 LTGMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIK 254
LT + V +D+S+ V + YD I IK
Sbjct: 25 LTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIK 60
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism
regulatory protein GAL80 {Yeast (Kluyveromyces lactis)
[TaxId: 28985]}
Length = 237
Score = 25.7 bits (55), Expect = 4.9
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 3 KVKIGINGFGRIGRLVARVIL-----QRDDVELVA 32
+++G G VA+ ++VA
Sbjct: 16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVA 50
>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal domain
{Murine cytomegalovirus (MCMV) [TaxId: 10366]}
Length = 232
Score = 25.2 bits (55), Expect = 8.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 121 MFVVGVNENEYKPELNIVSNASCTTNCLAPLAKV 154
M +V + ++ P + + C +NC L
Sbjct: 1 MKIVRASRDQSAPVYGPRAGSQCMSNCFTFLHTC 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 934,745
Number of extensions: 42209
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 67
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)