BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025370
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna
Unguiculata Suggests A New Enzymatic Mechanism
Length = 238
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 140/203 (68%), Positives = 166/203 (81%), Gaps = 1/203 (0%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
N LEP MS+ TLE+HWGKHHR YVENL KQ+VGTELDG SLE++I+ +YNKG++LP FNN
Sbjct: 29 NGLEPVMSQQTLEFHWGKHHRTYVENLKKQVVGTELDGKSLEEIIVTAYNKGDILPAFNN 88
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ WNH+FFW IERDFGSF++FL+EFK+AAATQFGSGWAWLA
Sbjct: 89 AAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFEKFLDEFKAAAATQFGSGWAWLA 148
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW-DYSPLLTIDVWEHAYFLDFENR 189
YKA++L+ +NA NP +++D KLVV+KSPNAVNPLVW Y PLLTIDVWEHAY+LDF+NR
Sbjct: 149 YKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNR 208
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
RP+YISVFMDKLVSW+ VS RLE
Sbjct: 209 RPDYISVFMDKLVSWDAVSSRLE 231
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
pdb|1MY6|B Chain B, The 1.6 A Structure Of Fe-superoxide Dismutase From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus : Correlation Of Epr And Structural
Characteristics
Length = 199
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 99/202 (49%), Positives = 122/202 (60%), Gaps = 18/202 (8%)
Query: 11 NALEPH-MSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
ALEP+ MS TLE+H+GKHH+ YV+NLNK TEL SLEDVI +Y + FN
Sbjct: 12 GALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVGIFN 71
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAAQ WNH FFW I FGS+D F +FK+AAATQFGSGWAWL
Sbjct: 72 NAAQVWNHTFFWNSLKPGGGGVPTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWL 131
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
+A L V K+ NA NPLV PLLTIDVWEHAY+LD++NR
Sbjct: 132 VLEAGTLK-----------------VTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNR 174
Query: 190 RPNYISVFMDKLVSWEVVSKRL 211
RP++I F+++LV+W+ V+K L
Sbjct: 175 RPDFIDNFLNQLVNWDFVAKNL 196
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISA|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISB|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1ISC|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 192
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
++AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S +G + FN
Sbjct: 11 KDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS--EGGV---FN 65
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAAQ WNH F+W I FGSF F +F AA FGSGW WL
Sbjct: 66 NAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWL 125
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
V N+ D KL +V + NA PL D +PLLT+DVWEHAY++D+ N
Sbjct: 126 --------VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNA 169
Query: 190 RPNYISVFMDKLVSWEVVSKRL 211
RP Y+ F LV+WE V+K L
Sbjct: 170 RPGYLEHFW-ALVNWEFVAKNL 190
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|B Chain B, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|C Chain C, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2NYB|D Chain D, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e
At 1.1 Angstrom Resolution
pdb|2BKB|A Chain A, Q69e-Fesod
pdb|2BKB|B Chain B, Q69e-Fesod
pdb|2BKB|C Chain C, Q69e-Fesod
pdb|2BKB|D Chain D, Q69e-Fesod
Length = 192
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 115/202 (56%), Gaps = 22/202 (10%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
++AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S +G + FN
Sbjct: 11 KDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS--EGGV---FN 65
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAA+ WNH F+W I FGSF F +F AA FGSGW WL
Sbjct: 66 NAAEVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWL 125
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
V N+ D KL +V + NA PL D +PLLT+DVWEHAY++D+ N
Sbjct: 126 --------VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNA 169
Query: 190 RPNYISVFMDKLVSWEVVSKRL 211
RP Y+ F LV+WE V+K L
Sbjct: 170 RPGYLEHFW-ALVNWEFVAKNL 190
>pdb|1ZA5|A Chain A, Q69h-Fesod
pdb|1ZA5|B Chain B, Q69h-Fesod
Length = 192
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 114/202 (56%), Gaps = 22/202 (10%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
++AL PH+S +T+EYH+GKHH+ YV NLN I GT +G SLE++I S +G + FN
Sbjct: 11 KDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSS--EGGV---FN 65
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAA WNH F+W I FGSF F +F AA FGSGW WL
Sbjct: 66 NAAHVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWL 125
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
V N+ D KL +V + NA PL D +PLLT+DVWEHAY++D+ N
Sbjct: 126 --------VKNS--------DGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNA 169
Query: 190 RPNYISVFMDKLVSWEVVSKRL 211
RP Y+ F LV+WE V+K L
Sbjct: 170 RPGYLEHFW-ALVNWEFVAKNL 190
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|B Chain B, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
pdb|1DT0|C Chain C, Cloning, Sequence, And Crystallographic Structure Of
Recombinant Iron Superoxide Dismutase From Pseudomonas
Ovalis
Length = 197
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 110/203 (54%), Gaps = 22/203 (10%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
+AL+PH+SK+TLE+H KHH YV NLN + GTE +G +LE+++ S G + FN
Sbjct: 11 HDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEFEGKTLEEIVKTS--SGGI---FN 65
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAAQ WNH F+W I FGSFD+F EEF + FGSGW WL
Sbjct: 66 NAAQVWNHTFYWNCLSPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWL 125
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
KA D L + + A PL +PLLT DVWEHAY++D+ N
Sbjct: 126 VKKA----------------DGSLALASTIGAGCPLTIGDTPLLTCDVWEHAYYIDYRNL 169
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
RP Y+ F + LV+W V+++ E
Sbjct: 170 RPKYVEAFWN-LVNWAFVAEQFE 191
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 114/201 (56%), Gaps = 23/201 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
+ALE +SK+T+EYH+GKHH+ YV NLN + GTE DG +LE+++ S N G FNN
Sbjct: 16 DALESTISKETIEYHYGKHHQTYVTNLNNLVEGTEHDGRNLEEIVKTS-NGG----IFNN 70
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ +NH F+W IE FGS + F E+F AA FGSGWAWL
Sbjct: 71 AAQVFNHTFYWNCLTPNKTEASSQLKAALIET-FGSVENFKEQFSKAAIATFGSGWAWL- 128
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
V N + KL +V + NA PL + PLLT DVWEHAY++D+ N R
Sbjct: 129 -------VKNT--------EGKLEIVTTSNAGCPLTENKKPLLTFDVWEHAYYIDYRNAR 173
Query: 191 PNYISVFMDKLVSWEVVSKRL 211
P Y+ D +V+W+ VS++
Sbjct: 174 PKYVEALWD-IVNWQFVSEQF 193
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
pdb|3TQJ|B Chain B, Structure Of The Superoxide Dismutase (Fe) (Sodb) From
Coxiella Burnetii
Length = 210
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 114/207 (55%), Gaps = 22/207 (10%)
Query: 6 LLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNML 65
L + NALEPH+S++TLEYH GKHHRAYV LNK I GT + LE++I S G +
Sbjct: 8 LPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEGTPFEKEPLEEIIRKS--DGGI- 64
Query: 66 PPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSG 125
FNNAAQ WNH F+W I++ FGS ++F F +A FGSG
Sbjct: 65 --FNNAAQHWNHTFYWHCMSPDGGGDPSGELASAIDKTFGSLEKFKALFTDSANNHFGSG 122
Query: 126 WAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLD 185
WAWL + + KL V+ + NA NP+ PL+T DVWEHAY++D
Sbjct: 123 WAWLV----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYYID 166
Query: 186 FENRRPNYISVFMDKLVSWEVVSKRLE 212
N RP Y++ F ++V+W+ V K +
Sbjct: 167 TRNDRPKYVNNFW-QVVNWDFVMKNFK 192
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
pdb|3JS4|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Anaplasma Phagocytophilum
Length = 227
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 114/206 (55%), Gaps = 20/206 (9%)
Query: 12 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM---SLEDVIIVSYNKGNM-LPP 67
LEP++S L+ H+ HH+ YV+ LNK +VGTE +G+ SL D+++ ++N G+
Sbjct: 32 GLEPYISSHLLDRHYNGHHKTYVDVLNKLVVGTEFEGLGNESLGDIVVKAHNSGSAGRAI 91
Query: 68 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 127
FNNAAQ WNH+F+W IE FGS + F F ++ QFGSGW
Sbjct: 92 FNNAAQIWNHDFYWQSMKPNGGGNPPEKLREMIEHSFGSVEGFNNAFTTSGLGQFGSGWV 151
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDF 186
WL Y E K L VV + NA +PL+ PL T+DVWEHAY+LD+
Sbjct: 152 WLVY---------------DEDAKALKVVSTANADSPLLTQGQLPLATMDVWEHAYYLDY 196
Query: 187 ENRRPNYISVFMDKLVSWEVVSKRLE 212
N R YI VF++ L++W+ V RLE
Sbjct: 197 LNLRKKYIDVFLEHLLNWDFVLGRLE 222
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
pdb|3SDP|B Chain B, The 2.1 Angstroms Resolution Structure Of Iron Superoxide
Dismutase From Pseudomonas Ovalis
Length = 195
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 108/202 (53%), Gaps = 24/202 (11%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSYNKGNMLPPF 68
+AL+PH+SK+TLEYH KHH YV NLN + GT E +G +LE+ IV + G + F
Sbjct: 11 HDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTPEFEGKTLEE--IVKSSSGGI---F 65
Query: 69 NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAW 128
NNAAQ WNH F+W I FGSFD+F EEF + FGSGWAW
Sbjct: 66 NNAAQVWNHTFYWNCLSPDAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWAW 125
Query: 129 LAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
L + D L + + A PL +PLLT DVWEHAY++D+ N
Sbjct: 126 LV-----------------KADGSLALCSTIGAGAPLTSGDTPLLTCDVWEHAYYIDYRN 168
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP Y+ F + LV+W V++
Sbjct: 169 LRPKYVEAFWN-LVNWAFVAEE 189
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida.
pdb|2W7W|B Chain B, The Crystal Structure Of Iron Superoxide Dismutase From
Aliivibrio Salmonicida
Length = 194
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 112/203 (55%), Gaps = 23/203 (11%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
++ALEPH+S +TL+YH GKHH YV LN I GTE +G +LE++I S G + FN
Sbjct: 12 KDALEPHISAETLDYHHGKHHNTYVVKLNGLIPGTEFEGKTLEEIIKTS--TGGV---FN 66
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAAQ WNH F+W I+ FGSF+ F +F +A FGS W WL
Sbjct: 67 NAAQIWNHTFYWNCLAPNAGGQPTGAVAAAIDAAFGSFEEFKAKFTDSAINNFGSSWTWL 126
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD-YSPLLTIDVWEHAYFLDFEN 188
V NA D L +V + NA PL + +PLLT+D+WEHAY++DF N
Sbjct: 127 --------VKNA--------DGSLAIVNTSNAATPLTDEGVTPLLTVDLWEHAYYIDFRN 170
Query: 189 RRPNYISVFMDKLVSWEVVSKRL 211
RP+Y+ F LV+W V + L
Sbjct: 171 VRPDYMGAFW-SLVNWSFVEENL 192
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UES|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 22/200 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
+AL P +SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++G + FNN
Sbjct: 13 DALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSEGGI---FNN 67
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A Q NH ++ I++ FGSF++F EEF +A T FGSGW WLA
Sbjct: 68 AGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA 127
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
AN KL + K PNA NP+ +PLLT DVWEHAY+L ++NRR
Sbjct: 128 SDAN----------------GKLSIEKEPNAGNPVRKGLNPLLTFDVWEHAYYLTYQNRR 171
Query: 191 PNYISVFMDKLVSWEVVSKR 210
+++ +V W++V R
Sbjct: 172 ADHLKDLWS-IVDWDIVESR 190
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|B Chain B, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|C Chain C, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1QNN|D Chain D, Cambialistic Superoxide Dismutase From Porphyromonas
Gingivalis
pdb|1UER|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|B Chain B, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|C Chain C, Crystal Structure Of Porphyromonas Gingivalis Sod
pdb|1UER|D Chain D, Crystal Structure Of Porphyromonas Gingivalis Sod
Length = 191
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 22/200 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
+AL P +SK+T+E+H GKH + YV+NLNK I+GTE + L IV ++G + FNN
Sbjct: 13 DALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEFENADLN--TIVQKSEGGI---FNN 67
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A Q NH ++ I++ FGSF++F EEF +A T FGSGW WLA
Sbjct: 68 AGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLA 127
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
AN KL + K PNA NP+ +PLL DVWEHAY+L ++NRR
Sbjct: 128 SDAN----------------GKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRR 171
Query: 191 PNYISVFMDKLVSWEVVSKR 210
+++ +V W++V R
Sbjct: 172 ADHLKDLWS-IVDWDIVESR 190
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LIO|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form I)
pdb|3LJ9|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJ9|B Chain B, X-Ray Structure Of The Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis In Complex With Sodium
Azide
pdb|3LJF|A Chain A, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|C Chain C, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|B Chain B, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
pdb|3LJF|D Chain D, The X-Ray Structure Of Iron Superoxide Dismutase From
Pseudoalteromonas Haloplanktis (Crystal Form Ii)
Length = 192
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 104/196 (53%), Gaps = 23/196 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
+ALEPH+SK+TLE+H GKHH YV LN I GT+ + SLE+++ S G + FNN
Sbjct: 12 DALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKFENKSLEEIVCSS--DGGV---FNN 66
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ WNH F+W I +GSFD F E A FGS W WL
Sbjct: 67 AAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV 126
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWD-YSPLLTIDVWEHAYFLDFENR 189
A D L +V + NA PL D +P+LT+D+WEHAY++D+ N
Sbjct: 127 KLA----------------DGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNV 170
Query: 190 RPNYISVFMDKLVSWE 205
RP+Y+ F LV+WE
Sbjct: 171 RPDYLKGFW-SLVNWE 185
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus
pdb|2CW2|B Chain B, Crystal Structure Of Superoxide Dismutase From P. Marinus
Length = 226
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 24/200 (12%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIV-GTELDGMSLEDVIIVSYNKGNMLPPF 68
+NALEPHMS +TL YH KHH+ YV+ LN + + +LE +I K PF
Sbjct: 42 KNALEPHMSAETLTYHHDKHHQTYVDTLNSIAAENSTIASKTLEQIIKTETGK-----PF 96
Query: 69 NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAW 128
N AAQ +NH FF+ I RDFGSF++F E+F +AA FGSGW W
Sbjct: 97 NQAAQVYNHTFFFNNLAPNGGGEPTGKIAELITRDFGSFEKFKEDFSAAAVGHFGSGWVW 156
Query: 129 LAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
L D KL +V+ +A NP+ +PL+ IDVWEHAY++D+ N
Sbjct: 157 LI-----------------ADDGKLKIVQGHDAGNPIRESKTPLMNIDVWEHAYYIDYRN 199
Query: 189 RRPNYISVFMDKLVSWEVVS 208
R Y+ + + LV+W+ V+
Sbjct: 200 ARAQYVKNYWN-LVNWDFVN 218
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 23/203 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
NAL PH+S++TL +H+ KHH YV LN I T L SL D++ K + FNN
Sbjct: 21 NALSPHISEETLSFHYNKHHAGYVNKLNGLIKDTPLANKSLTDIL-----KESTGAIFNN 75
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ WNH F+W I+ DFGSF+ F ++F + FGSGW WLA
Sbjct: 76 AAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKDQFSNVLCGHFGSGWGWLA 135
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENR 189
K+ KLV++++ +A NP+ + P+LT DVWEHAY++D+ N
Sbjct: 136 L----------------NKNNKLVILQTHDAGNPIKENTGIPILTCDVWEHAYYIDYRND 179
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
R +Y+ + + LV+W ++ L+
Sbjct: 180 RLSYVKAWWN-LVNWNFANENLK 201
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|B Chain B, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|C Chain C, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|1Y67|D Chain D, Crystal Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans
pdb|2AW9|A Chain A, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
pdb|2AW9|B Chain B, Superoxide Dismutase With Manganese From Deinococcus
Radiodurans
Length = 229
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 114/215 (53%), Gaps = 36/215 (16%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI-----IVSYNKGNML 65
+ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I + + KG +
Sbjct: 14 DALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALR 73
Query: 66 PPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXX----XIERDFGSFDRFLEEFKSAAATQ 121
NNA NH FW I FGSFD F ++F+ AA T+
Sbjct: 74 ---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTR 130
Query: 122 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY------SPLLTI 175
FGSGWAWL KD KL VV + N NPL+ + +P+L +
Sbjct: 131 FGSGWAWLVV-----------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGV 173
Query: 176 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 210
DVWEHAY+L+++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 174 DVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 207
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
pdb|3KKY|B Chain B, Structure Of Manganese Superoxide Dismutase From
Deinococcus Radiodurans In The Orthorhombic Space Group
P212121: A Case Study Of Mistaken Identity
Length = 211
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 114/215 (53%), Gaps = 36/215 (16%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI-----IVSYNKGNML 65
+ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I + + KG +
Sbjct: 13 DALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALR 72
Query: 66 PPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXX----XIERDFGSFDRFLEEFKSAAATQ 121
NNA NH FW I FGSFD F ++F+ AA T+
Sbjct: 73 ---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTR 129
Query: 122 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY------SPLLTI 175
FGSGWAWL KD KL VV + N NPL+ + +P+L +
Sbjct: 130 FGSGWAWLVV-----------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGV 172
Query: 176 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 210
DVWEHAY+L+++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 173 DVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 206
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|C Chain C, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CDY|D Chain D, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
pdb|2CE4|B Chain B, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus
Radiodurans
Length = 231
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 114/215 (53%), Gaps = 36/215 (16%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVI-----IVSYNKGNML 65
+ALEPH+ T+E H KHH+ YV+N NK + GTE + +E +I + + KG +
Sbjct: 33 DALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALR 92
Query: 66 PPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXX----XIERDFGSFDRFLEEFKSAAATQ 121
NNA NH FW I FGSFD F ++F+ AA T+
Sbjct: 93 ---NNAGGHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTR 149
Query: 122 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY------SPLLTI 175
FGSGWAWL KD KL VV + N NPL+ + +P+L +
Sbjct: 150 FGSGWAWLVV-----------------KDGKLDVVSTANQDNPLMGEAIAGVSGTPILGV 192
Query: 176 DVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKR 210
DVWEHAY+L+++NRRP+Y++ F + +V+W+ VSKR
Sbjct: 193 DVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKR 226
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XUQ|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus
Anthracis At 1.8a Resolution
Length = 212
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 106/209 (50%), Gaps = 29/209 (13%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPPF- 68
+ALEPH K+T+ H KHH Y+ NLN + G EL S+E+++ N +P
Sbjct: 23 DALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVA----NLNEVPEAI 78
Query: 69 -----NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NN NH FFW IE FGSFD F EEF A AT+FG
Sbjct: 79 RTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFG 138
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYF 183
SGWAWL V+N +L V +PN +PL +P++ +DVWEHAY+
Sbjct: 139 SGWAWLV-------VNNG----------ELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYY 181
Query: 184 LDFENRRPNYISVFMDKLVSWEVVSKRLE 212
L+++NRRP+YI F + +V W KR +
Sbjct: 182 LNYQNRRPDYIGAFWN-VVDWNAAEKRYQ 209
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
NAL PH+S++TL +H+ KHH YV LN I T SL D++ K + FNN
Sbjct: 13 NALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAIFNN 67
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ WNH F+W I+ DFGSF+ F E+F + FGSGW WLA
Sbjct: 68 AAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLA 127
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENR 189
N KLV++++ +A NP+ + P+LT D+WEHAY++D+ N
Sbjct: 128 LNNNN----------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRND 171
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
R +Y+ + + LV+W ++ L+
Sbjct: 172 RASYVKAWWN-LVNWNFANENLK 193
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
NAL PH+S++TL +H+ KHH YV LN I T SL D++ K + FNN
Sbjct: 12 NALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAEKSLLDIV-----KESSGAIFNN 66
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ WNH F+W I+ DFGSF+ F E+F + FGSGW WLA
Sbjct: 67 AAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLA 126
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENR 189
N KLV++++ +A NP+ + P+LT D+WEHAY++D+ N
Sbjct: 127 LNNNN----------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRND 170
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
R +Y+ + + LV+W ++ L+
Sbjct: 171 RASYVKAWWN-LVNWNFANENLK 192
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 23/203 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
NAL PH+S++TL +H+ KHH YV LN I T SL +++ K + FNN
Sbjct: 13 NALSPHISEETLNFHYNKHHAGYVNKLNGLIKDTPFATKSLVEIM-----KESTGAIFNN 67
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
AAQ WNH F+W I+ DFGSF+ F EF + FGSGW WL
Sbjct: 68 AAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWGWLV 127
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS-PLLTIDVWEHAYFLDFENR 189
N KLV++++ +A NP+ + P+LT D+WEHAY++D+ N
Sbjct: 128 LNNNN----------------KLVILQTHDAGNPIKDNTGIPILTCDIWEHAYYIDYRND 171
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
RP+Y+ + + LV+W ++ L+
Sbjct: 172 RPSYVKAWWN-LVNWNFANENLK 193
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|B Chain B, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|C Chain C, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|D Chain D, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|E Chain E, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|F Chain F, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|G Chain G, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
pdb|2RCV|H Chain H, Crystal Structure Of The Bacillus Subtilis Superoxide
Dismutase
Length = 202
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 112/202 (55%), Gaps = 21/202 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPP 67
+ALEPH+ K+T+ H KHH YV NLNK + G T L S+E+++ + S +
Sbjct: 13 DALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAV 72
Query: 68 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 127
NN NH+ FW I FGSFD+F E+F +AAA +FGSGWA
Sbjct: 73 RNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWA 132
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
WL V+N KL + +PN +PL +P+L +DVWEHAY+L+++
Sbjct: 133 WLV-------VNNG----------KLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQ 175
Query: 188 NRRPNYISVFMDKLVSWEVVSK 209
NRRP+YIS F + +V+W+ V++
Sbjct: 176 NRRPDYISAFWN-VVNWDEVAR 196
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
pdb|3CEI|B Chain B, Crystal Structure Of Superoxide Dismutase From
Helicobacter Pylori
Length = 213
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 22/203 (10%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
++++ +S ++H GKHH+ YV NLN I GT+ + SL I++ + G + FN
Sbjct: 11 KDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSL--FAILTKSSGGV---FN 65
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
NAAQ +NH+F+W +E+DFGS ++F E+F +A T FGSGW W
Sbjct: 66 NAAQIYNHDFYWDCLSPKATALSDELKGA-LEKDFGSLEKFKEDFIKSATTLFGSGWNWA 124
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
AY N+D +K+ ++++ NA P+ PLL +DVWEHAY++D +N
Sbjct: 125 AY-----NLDT----------QKIEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNA 169
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
RP Y+ F ++W VS+ E
Sbjct: 170 RPVYLEKFYGH-INWHFVSQCYE 191
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|B Chain B, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|C Chain C, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|D Chain D, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|E Chain E, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|F Chain F, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|G Chain G, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|H Chain H, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|I Chain I, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|J Chain J, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|K Chain K, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
pdb|4F2N|L Chain L, Crystal Structure Of Iron Superoxide Dismutase From
Leishmania Major
Length = 230
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 19/203 (9%)
Query: 10 QNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN 69
++ ++P MS LE H+ KHH AYV+ LN +G +G ++E++I+ + FN
Sbjct: 43 KDGIQPVMSPRQLELHYSKHHSAYVDKLN--TLGKGYEGKTIEEIILATTGINESKVMFN 100
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
AAQ +NH FFW I + FGS D F+ F+ A FGSGW WL
Sbjct: 101 QAAQHFNHSFFWKCLSPGGKPMPKTLENA-IAKQFGSVDDFMVSFQQAGVNNFGSGWTWL 159
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
V+P + K+L++ + NA PL P+ T DVWEHAY+ DFENR
Sbjct: 160 C-----------VDP----QTKELLIDSTSNAGCPLTSGLRPIFTADVWEHAYYKDFENR 204
Query: 190 RPNYISVFMDKLVSWEVVSKRLE 212
R +Y+ ++V WE V E
Sbjct: 205 RADYLKELW-QIVDWEFVCHMYE 226
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
pdb|4H3E|B Chain B, Crystal Structure Of A Putative Iron Superoxide Dismutase
From Trypanosoma Cruzi Bound To Iron
Length = 241
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 17/208 (8%)
Query: 2 LIKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNK 61
L K + ++ P S +E H+ KHH+AYV+ LN + GT DG S+E++I+ N
Sbjct: 44 LPKLGFNWKDGCAPVFSPRQMELHYTKHHKAYVDKLN-ALAGTTYDGKSIEEIILAVAND 102
Query: 62 GNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 121
FN AAQ +NH F++ + FGS ++F + F A
Sbjct: 103 AEKKGLFNQAAQHFNHTFYFRCITPNGKAMPKSFESA-VTAQFGSVEQFKDAFVQAGVNN 161
Query: 122 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHA 181
FGSGW WL VD PS K++ LV+ + NA PL P+L +DVWEHA
Sbjct: 162 FGSGWTWLC-------VD------PSNKNQ-LVIDNTSNAGCPLTKGLRPVLAVDVWEHA 207
Query: 182 YFLDFENRRPNYISVFMDKLVSWEVVSK 209
Y+ DFENRRP+Y+ ++ WE V+K
Sbjct: 208 YYKDFENRRPDYLKEIWS-VIDWEFVAK 234
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1I0H|B Chain B, Crystal Structure Of The E. Coli Manganese Superoxide
Dismutase Mutant Y174f At 1.35 Angstroms Resolution.
pdb|1IX9|A Chain A, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IX9|B Chain B, Crystal Structure Of The E. Coli Manganase(Iii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|A Chain A, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1IXB|B Chain B, Crystal Structure Of The E. Coli Manganese(Ii) Superoxide
Dismutase Mutant Y174f At 0.90 Angstroms Resolution.
pdb|1ZLZ|A Chain A, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
pdb|1ZLZ|B Chain B, Re-Evaluation Of The Low-Temperature Azide In Mn-Dependent
Superoxide Dismutase
Length = 205
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP-- 67
+ALEPH K T+E H KHH+ YV N N + E + +E++I K + LP
Sbjct: 12 DALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADK 67
Query: 68 ----FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NNA NH FW IERDFGS D F EF+ AAA++FG
Sbjct: 68 KTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFG 125
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDV 177
SGWAWL K + KL VV + N +PL+ + P++ +DV
Sbjct: 126 SGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDV 168
Query: 178 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211
WEHAYFL F+NRRP+YI F + +V+W+ + R
Sbjct: 169 WEHAYFLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|B Chain B, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|C Chain C, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1VEW|D Chain D, Manganese Superoxide Dismutase From Escherichia Coli
pdb|1MMM|A Chain A, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1MMM|B Chain B, Distinct Metal Environment In Iron-Substituted Manganese
Superoxide Dismutase Provides A Structural Basis Of
Metal Specificity
pdb|1D5N|A Chain A, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|B Chain B, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|C Chain C, Crystal Structure Of E. Coli Mnsod At 100k
pdb|1D5N|D Chain D, Crystal Structure Of E. Coli Mnsod At 100k
pdb|3K9S|A Chain A, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|B Chain B, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|C Chain C, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3K9S|D Chain D, Crystal Structure Of The Peroxide-Bound Manganese
Superoxide Dismutase.
pdb|3OT7|A Chain A, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|B Chain B, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|C Chain C, Escherichia Coli Apo-Manganese Superoxide Dismutase
pdb|3OT7|D Chain D, Escherichia Coli Apo-Manganese Superoxide Dismutase
Length = 205
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP-- 67
+ALEPH K T+E H KHH+ YV N N + E + +E++I K + LP
Sbjct: 12 DALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADK 67
Query: 68 ----FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NNA NH FW IERDFGS D F EF+ AAA++FG
Sbjct: 68 KTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFG 125
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDV 177
SGWAWL K + KL VV + N +PL+ + P++ +DV
Sbjct: 126 SGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDV 168
Query: 178 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211
WEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 169 WEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
pdb|1EN6|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146l Mutant
Length = 205
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP-- 67
+ALEPH K T+E H KHH+ YV N N + E + +E++I K + LP
Sbjct: 12 DALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADK 67
Query: 68 ----FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NNA NH FW IERDFGS D F EF+ AAA++FG
Sbjct: 68 KTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFG 125
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDV 177
SGWAWL K + KL VV + N +PL+ + P++ +DV
Sbjct: 126 SGWAWLVLKGD-----------------KLAVVSTANLDSPLMGEAISGASGFPIMGLDV 168
Query: 178 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211
WEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 169 WEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
pdb|1EN4|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Q146h Mutant
Length = 205
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP-- 67
+ALEPH K T+E H KHH+ YV N N + E + +E++I K + LP
Sbjct: 12 DALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADK 67
Query: 68 ----FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NNA NH FW IERDFGS D F EF+ AAA++FG
Sbjct: 68 KTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFG 125
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDV 177
SGWAWL K + KL VV + N +PL+ + P++ +DV
Sbjct: 126 SGWAWLVLKGD-----------------KLAVVSTANHDSPLMGEAISGASGFPIMGLDV 168
Query: 178 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211
WEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 169 WEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|B Chain B, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|C Chain C, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
pdb|1EN5|D Chain D, Crystal Structure Analysis Of The E. Coli Manganese
Superoxide Dismutase Y34f Mutant
Length = 205
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP-- 67
+ALEPH K T+E H KHH+ +V N N + E + +E++I K + LP
Sbjct: 12 DALEPHFDKQTMEIHHTKHHQTFVNNANAALESLPEFANLPVEELIT----KLDQLPADK 67
Query: 68 ----FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NNA NH FW IERDFGS D F EF+ AAA++FG
Sbjct: 68 KTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFG 125
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDV 177
SGWAWL K + KL VV + N +PL+ + P++ +DV
Sbjct: 126 SGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDV 168
Query: 178 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211
WEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 169 WEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|B Chain B, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|C Chain C, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
pdb|1I08|D Chain D, Crystal Structure Analysis Of The H30a Mutant Of Manganese
Superoxide Dismutase From E. Coli
Length = 205
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 106/214 (49%), Gaps = 37/214 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVIIVSYNKGNMLPP-- 67
+ALEPH K T+E H K H+ YV N N + E + +E++I K + LP
Sbjct: 12 DALEPHFDKQTMEIHHTKAHQTYVNNANAALESLPEFANLPVEELIT----KLDQLPADK 67
Query: 68 ----FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
NNA NH FW IERDFGS D F EF+ AAA++FG
Sbjct: 68 KTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA--IERDFGSVDNFKAEFEKAAASRFG 125
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS------PLLTIDV 177
SGWAWL K + KL VV + N +PL+ + P++ +DV
Sbjct: 126 SGWAWLVLKGD-----------------KLAVVSTANQDSPLMGEAISGASGFPIMGLDV 168
Query: 178 WEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211
WEHAY+L F+NRRP+YI F + +V+W+ + R
Sbjct: 169 WEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARF 201
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 21/205 (10%)
Query: 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSY 59
+K L +ALEP++ K+T++ H KH++AYV+ LN + EL SL +++ + S
Sbjct: 8 VKPLPYAYDALEPYIDKETMKLHHDKHYQAYVDKLNAALEKYPELYNYSLCELLQNLDSL 67
Query: 60 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 119
K NNA A+NH+FF+ I+RDFGSF++F +EF+ +A
Sbjct: 68 PKDIATTVRNNAGGAYNHKFFFDIMTPEKTIPSESLKEA-IDRDFGSFEKFKQEFQKSAL 126
Query: 120 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 179
FGSGWAWL + KD KL ++ +PN +P+ + +P++ +DVWE
Sbjct: 127 DVFGSGWAWLV----------------ATKDGKLSIMTTPNQDSPVSKNLTPIIGLDVWE 170
Query: 180 HAYFLDFENRRPNYISVFMDKLVSW 204
HAY+L ++NRR YI + + +V+W
Sbjct: 171 HAYYLKYQNRRNEYIDNWFN-VVNW 194
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 23/191 (12%)
Query: 17 MSKDTLEYHWGKHHRAYVENLNKQI-VGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 75
+SK+ + +H+ KHH YV LN L S+E++I KG P FN AAQ +
Sbjct: 20 ISKEQVTFHYDKHHMGYVTKLNAAANSNPALAAKSVEEIIRTE--KG---PIFNLAAQIF 74
Query: 76 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 135
NH F+W I FGSF +F EEF +AA FGSGWAWL
Sbjct: 75 NHNFYWESMSPNGGGEPSGKLAEAIRASFGSFAKFKEEFTNAAVGHFGSGWAWLVQDTTT 134
Query: 136 LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLV-WDYSPLLTIDVWEHAYFLDFENRRPNYI 194
KKL V ++ +A PL D P+LT DVWEHAY++D++N RP Y+
Sbjct: 135 ---------------KKLKVFQTHDAGCPLTEADLKPILTCDVWEHAYYIDYKNDRPAYV 179
Query: 195 SVFMDKLVSWE 205
F + +V+W+
Sbjct: 180 QTFWN-VVNWD 189
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
Bacillus Halodenitrificans
Length = 202
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 21/203 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI--IVSYNKGNMLPP 67
+ALEP + K+T+ H KHH YV LN + G E L SL D+I + + +
Sbjct: 13 DALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISNLDAVPENIRTAV 72
Query: 68 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 127
NN NH FW I +GSF++F EEF +AAA +FGSGWA
Sbjct: 73 RNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWA 132
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
WL V+N ++ ++ +P NPL+ P+L +DVWEHAY+L ++
Sbjct: 133 WLV-------VNNG----------EIEIMSTPIQDNPLMEGKKPILGLDVWEHAYYLKYQ 175
Query: 188 NRRPNYISVFMDKLVSWEVVSKR 210
N+RP+YIS F + +V+W+ V+ +
Sbjct: 176 NKRPDYISAFWN-VVNWDEVAAQ 197
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
pdb|2GPC|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Trypanosoma Cruzi
Length = 194
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 17 MSKDTLEYHWGKHHRAYVENLNKQI-VGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAW 75
+SK + H+ KHH+ YV LN + L S+E++I KG P FN AAQ +
Sbjct: 19 LSKQQVTLHYDKHHQGYVTKLNAAAQTNSALATKSIEEIIRTE--KG---PIFNLAAQIF 73
Query: 76 NHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANR 135
NH F+W I FGSF +F EEF + A FGSGWAWL N
Sbjct: 74 NHTFYWESMXPNGGGEPTGKVADEINASFGSFAKFKEEFTNVAVGHFGSGWAWLVKDTN- 132
Query: 136 LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVW-DYSPLLTIDVWEHAYFLDFENRRPNYI 194
KL V ++ +A PL + PLLT DVWEHAY++D++N R Y+
Sbjct: 133 --------------SGKLKVYQTHDAGCPLTEPNLKPLLTCDVWEHAYYVDYKNDRAAYV 178
Query: 195 SVFMDKLVSWEVVSKRL 211
F + +V+W+ V ++L
Sbjct: 179 QTFWN-VVNWKNVERQL 194
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|1MNG|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
pdb|1MNG|B Chain B, Structure-Function In E. Coli Iron Superoxide Dismutase:
Comparisons With The Manganese Enzyme From T.
Thermophilus
Length = 203
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 20/201 (9%)
Query: 12 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVI--IVSYNKGNMLPPF 68
ALEPH+ T+E H KHH AYV NLN + L G+ +E ++ + + +
Sbjct: 15 ALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVR 74
Query: 69 NNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAW 128
NN NH FW I+ FG F E+ AA +FGSGWAW
Sbjct: 75 NNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAW 134
Query: 129 LAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
L +PF KL V+ +PN NP++ ++P++ IDVWEHAY+L ++N
Sbjct: 135 LV-----------KDPF-----GKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQN 178
Query: 189 RRPNYISVFMDKLVSWEVVSK 209
RR +Y+ + +++W+V +
Sbjct: 179 RRADYLQAIWN-VLNWDVAEE 198
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPP 67
+ALE + +T++ H KHH AYV NLN + EL S+E ++ + S +
Sbjct: 48 DALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTV 107
Query: 68 FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWA 127
NN NH FW I + FGSF+ F ++F A +FGSGW
Sbjct: 108 RNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWV 167
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
WL NP +L VV +PN NP++ P++ DVWEHAY+L ++
Sbjct: 168 WLVR-----------NP-----QGQLQVVSTPNQDNPIMEGSYPIMGNDVWEHAYYLRYQ 211
Query: 188 NRRPNYISVFMDKLVSWEVVSKRLE 212
NRRP Y++ + + +V+W +++R +
Sbjct: 212 NRRPEYLNNWWN-VVNWSEINRRTQ 235
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQTALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
pdb|1EM1|B Chain B, X-Ray Crystal Structure For Human Manganese Superoxide
Dismutase, Q143a
Length = 198
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--PLLTIDVWEHAYFLDFEN 188
+ R L + PNA +PL PLL IDVWEHAY+L ++N
Sbjct: 128 FNKER---------------GHLQIAACPNA-DPLQGTTGLIPLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|B Chain B, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|C Chain C, Crystal Structure Of Human Mnsod Y166f Mutant
pdb|1PL4|D Chain D, Crystal Structure Of Human Mnsod Y166f Mutant
Length = 198
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAYFL ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYFLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two
4-Helix Bundles
Length = 199
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 13 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 69
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 70 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 128
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 129 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 172
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 173 VRPDYLKAIWN-VINWENVTER 193
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1MSD|B Chain B, Comparison Of The Crystal Structures Of Genetically
Engineered Human Manganese Superoxide Dismutase And
Manganese Superoxide Dismutase From Thermus
Thermophilus. Differences In Dimer-Dimer Interactions.
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|2ADQ|B Chain B, Human Manganese Superoxide Dismutase
Length = 198
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANRLNVDNAVNPF--PSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R ++ A P P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNNDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKA|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN- 69
ALEPH++ ++ H KHH AYV NLN V E +L + + + + P
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA--QIALQPALKA 66
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
N NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 67 NGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWL 126
Query: 130 AYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
+ R L + N P + L+ PLL IDVWEHAY+L ++
Sbjct: 127 GFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYK 170
Query: 188 NRRPNYISVFMDKLVSWEVVSKR 210
N RP+Y+ + +++WE V++R
Sbjct: 171 NVRPDYLKAIWN-VINWENVTER 192
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
pdb|2QKC|C Chain C, Structural And Kinetic Study Of The Differences Between
Human And E.Coli Manganese Superoxide Dismutases
Length = 196
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN- 69
ALEPH++ ++ H KHH AYV NLN V E +L + + + + P
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTA--QIALQPALKL 66
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
N NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 67 NGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWL 126
Query: 130 AYKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
+ R L + N P + L+ PLL IDVWEHAY+L ++
Sbjct: 127 GFNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYK 170
Query: 188 NRRPNYISVFMDKLVSWEVVSKR 210
N RP+Y+ + +++WE V++R
Sbjct: 171 NVRPDYLKAIWN-VINWENVTER 192
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3T|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVW+HAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWDHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A+V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
pdb|1PM9|B Chain B, Crystal Structure Of Human Mnsod H30n, Y166f Mutant
Length = 198
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H K+H AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAYFL ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYFLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
pdb|1ZTE|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Suerpoxide Dismutase
Length = 198
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A+V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAHVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
pdb|3C3S|B Chain B, Role Of A Glutamate Bridge Spanning The Dimeric Interface
Of Human Manganese Superoxide Dismutase
Length = 198
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVW HAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWAHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution.
pdb|1XRE|B Chain B, Crystal Structure Of Soda-2 (Ba5696) From Bacillus
Anthracis At 1.8a Resolution
Length = 217
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 21/201 (10%)
Query: 13 LEPHMSKDTLEYHWGKHHRAYVENLNKQIVG-TELDGMSLEDVI--IVSYNKGNMLPPFN 69
LEP++ +TL H GKHH YV NLN + +EL SLE+++ + + K + N
Sbjct: 25 LEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRN 84
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
N + H FW I+ F +FD ++ AA ++FGSG+ WL
Sbjct: 85 NGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWL 144
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENR 189
++L V+ +PN PL PLL IDVWEHAY+L ++NR
Sbjct: 145 VLDG-----------------EELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNR 187
Query: 190 RPNYISVFMDKLVSWEVVSKR 210
RP +++ + V+W+ V+++
Sbjct: 188 RPEFVTNWW-HTVNWDRVNEK 207
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H K H AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKQHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|B Chain B, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|C Chain C, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
pdb|2GDS|D Chain D, Interrupting The Hydrogen Bonding Network At The Active
Site Of Human Manganese Superoxide Dismutase
Length = 198
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H K+H AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKNHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZUQ|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAVVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase
Length = 198
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAXVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|1ZSP|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAAVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|B Chain B, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|C Chain C, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
pdb|2P4K|D Chain D, Contribution To Structure And Catalysis Of Tyrosine 34 In
Human Manganese Superoxide Dismutase
Length = 198
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAANVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H K H AYV NLN V E +L + + FN
Sbjct: 13 GALEPHINAQIMQLHHSKVHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 69
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 70 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 128
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 129 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 172
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 173 VRPDYLKAIWN-VINWENVTER 193
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
pdb|1JA8|B Chain B, Kinetic Analysis Of Product Inhibition In Human Manganese
Superoxide Dismutase
Length = 198
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH AYV NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDV EHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVAEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
pdb|1SZX|B Chain B, Role Of Hydrogen Bonding In The Active Site Of Human
Manganese Superoxide Dismutase
Length = 198
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A+V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKYQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSG+ WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGFGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHAY+L ++N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAYYLQYKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+Y+ + +++WE V++R
Sbjct: 172 VRPDYLKAIWN-VINWENVTER 192
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|B Chain B, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|C Chain C, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|D Chain D, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|E Chain E, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
pdb|1MA1|F Chain F, Structure And Properties Of The Atypical Iron Superoxide
Dismutase From Methanobacterium Thermoautotrophicum
Length = 205
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 34/210 (16%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVII------VSYNKGNM 64
+ALEPH+S++ L H KHH+AYV+ N + + S DV I +S++ G
Sbjct: 19 DALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEARESDTDVDIKAALKELSFHVGGY 78
Query: 65 LPPFNNAAQAWNHEFFWXXX--XXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQF 122
+ H FFW IE+DFGSF+RF +EF AA +
Sbjct: 79 VL----------HLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAISAE 128
Query: 123 GSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAY 182
GSGWA L Y ++ +L +++ ++ + LL +DVWEHAY
Sbjct: 129 GSGWAVLTY---------------CQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAY 173
Query: 183 FLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
++D+ N RP+Y+ F + +V+W+ V KR E
Sbjct: 174 YIDYRNVRPDYVEAFWN-IVNWKEVEKRFE 202
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XIL|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A+V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAFVNNLN---VTEEKXQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHA L +N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAXXLQXKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+ + + +++WE V++R
Sbjct: 172 VRPDXLKAIWN-VINWENVTER 192
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
pdb|1XDC|B Chain B, Hydrogen Bonding In Human Manganese Superoxide Dismutase
Containing 3- Fluorotyrosine
Length = 198
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH++ ++ H KHH A V NLN V E +L + + FN
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAXVNNLN---VTEEKXQEALAKGDVTAQIALQPALKFNG 68
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
NH FW I+RDFGSFD+F E+ +A+ GSGW WL
Sbjct: 69 GGHI-NHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLG 127
Query: 131 YKANR--LNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ R L + N P + L+ PLL IDVWEHA L +N
Sbjct: 128 FNKERGHLQIAACPNQDPLQGTTGLI----------------PLLGIDVWEHAXXLQXKN 171
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
RP+ + + +++WE V++R
Sbjct: 172 VRPDXLKAIWN-VINWENVTER 192
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC6|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 198
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 92/208 (44%), Gaps = 40/208 (19%)
Query: 13 LEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNM-----LPP 67
LEP +S + ++ H KHH YV NLN+ +E+ + + +KGN+ L P
Sbjct: 15 LEPVISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAVSKGNVKEAIALQP 63
Query: 68 ---FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGS 124
FN NH FW I+ DFGS D ++ ++ GS
Sbjct: 64 ALKFNGGGHI-NHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQKQLSASTVAVQGS 121
Query: 125 GWAWLAY--KANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAY 182
GW WL Y K L V N P E LV PL IDVWEHAY
Sbjct: 122 GWGWLGYCPKGKILKVATCANQDPLEATTGLV----------------PLFGIDVWEHAY 165
Query: 183 FLDFENRRPNYISVFMDKLVSWEVVSKR 210
+L ++N RP+Y++ K+ +W+ VS+R
Sbjct: 166 YLQYKNVRPDYVNAIW-KIANWKNVSER 192
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
pdb|3DC5|C Chain C, Crystal Structure Of A Manganese Superoxide Dismutases
From Caenorhabditis Elegans
Length = 195
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 91/207 (43%), Gaps = 39/207 (18%)
Query: 13 LEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNM-----LPP 67
LEP +S + ++ H KHH YV NLN+ +E+ + + +KGN+ L P
Sbjct: 15 LEPVISHEIMQLHHQKHHATYVNNLNQ-----------IEEKLHEAVSKGNLKEAIALQP 63
Query: 68 ---FNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGS 124
FN NH FW I+RDFGS D + GS
Sbjct: 64 ALKFNGGGHI-NHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQKRLSDITIAVQGS 121
Query: 125 GWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFL 184
GW WL Y +KDK L + N +PL PL IDVWEHAY+L
Sbjct: 122 GWGWLGY---------------CKKDKILKIATCANQ-DPLE-GMVPLFGIDVWEHAYYL 164
Query: 185 DFENRRPNYISVFMDKLVSWEVVSKRL 211
++N RP+Y+ K+ +W+ +S+R
Sbjct: 165 QYKNVRPDYVHAIW-KIANWKNISERF 190
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 12 ALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNA 71
ALEP +S T+++H+ KHH+ Y++ L G ++L+ ++ + ++ FN A
Sbjct: 90 ALEPVISAATVDFHYNKHHQGYIQKL-LDATGLPESRINLKSLVTLGPDRAGE-NVFNAA 147
Query: 72 AQAWNHEFFWXXXXXXXXXXXXX--XXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWL 129
Q +NH +W I +G+ D E F A FGSGW WL
Sbjct: 148 GQIYNHNMYWLSMVPTSGSGRHVPPRLLKLIRARWGNVDEMKENFMRKATALFGSGWIWL 207
Query: 130 AYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS--PLLTIDVWEHAYFLDFE 187
+ ++++L +V + +A +PL D PL T DVWEHAY+LD++
Sbjct: 208 VWDT---------------RERRLDLVGTKDAHSPLSEDAGKIPLFTCDVWEHAYYLDYQ 252
Query: 188 NRRPNYISVFMDKLVSWEVVSKRL 211
+ R Y++ + L++WE L
Sbjct: 253 HDRAAYLTRWWS-LINWEFADSNL 275
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|B Chain B, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|C Chain C, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN6|D Chain D, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 24/202 (11%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH+S E H KHH YV+ N + E + + ED + N+ N+ FN
Sbjct: 14 GALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNL 70
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A NH +W I FGSFD+F +F +AA T GSGWA L
Sbjct: 71 AGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALG 129
Query: 131 YK--ANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFEN 188
+ N+L + + + + L +V PLL +D+WEHA++L ++N
Sbjct: 130 WDTLGNKLLI---FQVYDHQTNFPLAIV--------------PLLLLDMWEHAFYLQYKN 172
Query: 189 RRPNYISVFMDKLVSWEVVSKR 210
+ ++ F + +V+W V R
Sbjct: 173 VKVDFAKAFWN-VVNWADVQSR 193
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN3|B Chain B, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH+S E H KHH YV+ N + E + + ED + N+ N+ FN
Sbjct: 14 GALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNL 70
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A NH +W I FGSFD+F +F +AA T GSGWA L
Sbjct: 71 AGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALG 129
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
+ D N KL++ + + PLL +D+WEHA++L ++N +
Sbjct: 130 W-------DTLGN--------KLLIFQVYDQQTNFPLGIVPLLLLDMWEHAFYLQYKNVK 174
Query: 191 PNYISVFMDKLVSWEVVSKR 210
++ F + +V+W V R
Sbjct: 175 VDFAKAFWN-VVNWADVQSR 193
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|B Chain B, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|C Chain C, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase.
pdb|1GN4|D Chain D, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide
Dismutase
Length = 207
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH+S E H KHH YV+ N + E + + ED + N+ N+ FN
Sbjct: 14 GALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNL 70
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A NH +W I FGSFD+F +F +AA T GSGWA L
Sbjct: 71 AGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALG 129
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
+ D N KL++ + + PLL +D+WEHA++L ++N +
Sbjct: 130 W-------DTLGN--------KLLIFQVYDEQTNFPLGIVPLLLLDMWEHAFYLQYKNVK 174
Query: 191 PNYISVFMDKLVSWEVVSKR 210
++ F + +V+W V R
Sbjct: 175 VDFAKAFWN-VVNWADVQSR 193
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|B Chain B, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|C Chain C, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
pdb|1IDS|D Chain D, X-Ray Structure Analysis Of The Iron-Dependent Superoxide
Dismutase From Mycobacterium Tuberculosis At 2.0
Angstroms Resolutions Reveals Novel Dimer-Dimer
Interactions
Length = 207
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH+S E H KHH YV+ N + E + + ED + N+ N+ FN
Sbjct: 14 GALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNL 70
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A NH +W I FGSFD+F +F +AA T GSGWA L
Sbjct: 71 AGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALG 129
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
+ D N KL++ + + PLL +D+WEHA++L ++N +
Sbjct: 130 W-------DTLGN--------KLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVK 174
Query: 191 PNYISVFMDKLVSWEVVSKR 210
++ F + +V+W V R
Sbjct: 175 VDFAKAFWN-VVNWADVQSR 193
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|B Chain B, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|C Chain C, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|D Chain D, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|E Chain E, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|F Chain F, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|G Chain G, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis.
pdb|1GN2|H Chain H, S123c Mutant Of The Iron-Superoxide Dismutase From
Mycobacterium Tuberculosis
Length = 207
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
ALEPH+S E H KHH YV+ N + E + + ED + N+ N+ FN
Sbjct: 14 GALEPHISGQINELHHSKHHATYVKGANDAVAKLE-EARAKEDHSAILLNEKNL--AFNL 70
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGWAWLA 130
A NH +W I FGSFD+F +F +AA T G GWA L
Sbjct: 71 AGHV-NHTIWWKNLSPNGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGCGWAALG 129
Query: 131 YKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFENRR 190
+ D N KL++ + + PLL +D+WEHA++L ++N +
Sbjct: 130 W-------DTLGN--------KLLIFQVYDHQTNFPLGIVPLLLLDMWEHAFYLQYKNVK 174
Query: 191 PNYISVFMDKLVSWEVVSKR 210
++ F + +V+W V R
Sbjct: 175 VDFAKAFWN-VVNWADVQSR 193
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From
Acidilobus Saccharovorans
Length = 223
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPF 68
+ALEP +S +TL YH KHH YV N + E L+G L D+ + + ++ F
Sbjct: 29 DALEPIISAETLRYHHDKHHLGYVNGANAALDKLEKYLNG-QLTDIDVRAVSRDF---EF 84
Query: 69 NNAAQAWNHEFFWXXXXXXXXXXXXXXXXX--XIERDFGSFDRFLEEFKSAAATQFGSGW 126
N H +W I + FGSFD+F + F AA G GW
Sbjct: 85 NYGGHIL-HTLYWLNMAPKGKGGGTPGGAIGDAINKFFGSFDKFKKLFGDAAKNVEGVGW 143
Query: 127 AWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDF 186
A LAY P D +++ V+ N N + + PLL +DV+EHAY++D+
Sbjct: 144 AILAYD-------------PVTGDLRILQVEKHN--NVVTTNLIPLLAVDVFEHAYYIDY 188
Query: 187 ENRRPNYISVFMDKLVSWEVVSKRLE 212
N R Y+ + D L++W+ V R +
Sbjct: 189 RNDRAKYVDSWWD-LINWDDVEARYQ 213
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK1|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form
pdb|3AK2|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK2|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Mn-Bound
Form
pdb|3AK3|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|B Chain B, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|C Chain C, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
pdb|3AK3|D Chain D, Superoxide Dismutase From Aeropyrum Pernix K1, Fe-Bound
Form
Length = 214
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 26/206 (12%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPF 68
NALEP++ ++ ++ H KHH YV+ N + E L G DV V + F
Sbjct: 17 NALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFS-----F 71
Query: 69 NNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGW 126
N A H FW IE+ FG F++F F +AA T G GW
Sbjct: 72 NYAGHIM-HTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGW 130
Query: 127 AWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDF 186
LA+ P ++ +++ V+ N + + P+L IDVWEHAY+L +
Sbjct: 131 GVLAFD-------------PLTEELRILQVEKHNVL--MTAGLVPILVIDVWEHAYYLQY 175
Query: 187 ENRRPNYISVFMDKLVSWEVVSKRLE 212
+N R +Y+ + + +V+W+ V KRLE
Sbjct: 176 KNDRGSYVENWWN-VVNWDDVEKRLE 200
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|B Chain B, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|C Chain C, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
pdb|3EVK|D Chain D, Crystal Structure Of The Metal-Bound Superoxide Dismutase
From Pyrobaculum Aerophilum
Length = 222
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 36/211 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYN-----KGN 63
NALEP++S + ++ H KHH+ YV N + E G + D+ V + G+
Sbjct: 28 NALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGH 87
Query: 64 MLPPFNNAAQAWNHEFFW--XXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAATQ 121
+L H FW I + FGSF++F EEF AA
Sbjct: 88 IL-----------HSIFWPNMAPPGKGGGKPGGKIADLINKFFGSFEKFKEEFSQAAKNV 136
Query: 122 FGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHA 181
G GWA L Y+ P E+ ++ ++ N ++ D LL +DVWEHA
Sbjct: 137 EGVGWAILVYE-------------PLEEQLLILQIEKHNLMHAA--DAQVLLALDVWEHA 181
Query: 182 YFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
Y+L ++N R +Y+ + + +V+W+ V +RL+
Sbjct: 182 YYLQYKNDRGSYVDNWWN-VVNWDDVERRLQ 211
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR4|B Chain B, X-Ray Structure Analysis Of The Cambialistic Superoxide
Dismutase From Propionibacterium Shermanii Active With
Fe Or Mn
pdb|1AR5|A Chain A, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AR5|B Chain B, X-Ray Structure Of The Cambialistic Superoxide Dismutase
From Propionibacterium Shermanii Active With Fe Or Mn
pdb|1AVM|A Chain A, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1AVM|B Chain B, The Cambialistic Superoxide Dismutase (Fe-Sod) Of P.
Shermanii Coordinated By Azide
pdb|1BS3|A Chain A, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BS3|B Chain B, P.Shermanii Sod(Fe+3) Fluoride
pdb|1BSM|A Chain A, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BSM|B Chain B, P.Shermanii Sod(Fe+3) 140k Ph8
pdb|1BT8|A Chain A, P.Shermanii Sod(Fe+3) Ph 10.0
pdb|1BT8|B Chain B, P.Shermanii Sod(Fe+3) Ph 10.0
Length = 201
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 26/205 (12%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGM--SLEDVIIVSYNKGNMLPPF 68
+ALEP++S + +E H KHH+AYV+ N T LD + + + + NK F
Sbjct: 13 SALEPYISGEIMELHHDKHHKAYVDGAN-----TALDKLAEARDKADFGAINKLEKDLAF 67
Query: 69 NNAAQAWNHEFFWXXXXXXXXX--XXXXXXXXXIERDFGSFDRFLEEFKSAAATQFGSGW 126
N A NH FW I+ FGSFD +F +AA GSGW
Sbjct: 68 NLAGHV-NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGW 126
Query: 127 AWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDF 186
A L + +P K++ ++ + N L PLL +D+WEHA++L +
Sbjct: 127 ASLVW-----------DPL----GKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQY 171
Query: 187 ENRRPNYISVFMDKLVSWEVVSKRL 211
+N + +Y+ + + +V+W+ V+ R
Sbjct: 172 KNVKGDYVKSWWN-VVNWDDVALRF 195
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site.
pdb|1WB8|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. 2.3 A
Resolution Structure Of Recombinant Protein With A
Covalently Modified Tyrosin In The Active Site
Length = 210
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 21/205 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN- 69
+ALEP++SKD ++ H+ HH+ YV N + L+ + D+ Y+ ++
Sbjct: 19 DALEPYISKDIIDVHYNGHHKGYVNGANSLL--ERLEKVVKGDLQTGQYDIQGIIRGLTF 76
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXX--IERDFGSFDRFLEEFKSAAATQFGSGWA 127
N H +W I + +GSFDRF + F A + G+GWA
Sbjct: 77 NINGHKLHALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWA 136
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
L Y N L ++ N + + +L +D +EHAY+L ++
Sbjct: 137 VLYYDTESGN---------------LQIMTFENHFQNHIAEIPIILILDEFEHAYYLQYK 181
Query: 188 NRRPNYISVFMDKLVSWEVVSKRLE 212
N+R +Y++ + + +V+W+ K+L+
Sbjct: 182 NKRADYVNAWWN-VVNWDAAEKKLQ 205
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From
Saccharomyces Cerevisiae
Length = 215
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 38/216 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLP 66
ALEP++S E H+ KHH+ YV N T +D L D++ + N M+
Sbjct: 20 GALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIA 74
Query: 67 PFNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAA 119
N NH FW I+ FGS D ++ + A
Sbjct: 75 IQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLA 134
Query: 120 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTID 176
GSGWA++ V N N KL VV++ N PLV PL+ ID
Sbjct: 135 GVQGSGWAFI--------VKNLSN------GGKLDVVQTYNQDTVTGPLV----PLVAID 176
Query: 177 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
WEHAY+L ++N++ +Y + +V+W+ S+R +
Sbjct: 177 AWEHAYYLQYQNKKADYFKAIWN-VVNWKEASRRFD 211
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|X Chain X, Crystal Structure Of Aspergillus Fumigatus Mnsod
pdb|1KKC|Y Chain Y, Crystal Structure Of Aspergillus Fumigatus Mnsod
Length = 221
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNN 70
+AL+P++S+ +E H KHH+ YV LN + + + + +VS + FN
Sbjct: 26 DALQPYISQQIMELHHKKHHQTYVNGLNAALEAQKKAAEATDVPKLVSVQQAIK---FNG 82
Query: 71 AAQAWNHEFFWXXXXXXXXXXXXXXXX----XXIERDFGSFDRFLEEFKSAAATQFGSGW 126
NH FW IE+ +GSFD+F + F + GSGW
Sbjct: 83 GGHI-NHSLFWKNLAPEKSGGGKIDQAPVLKAAIEQRWGSFDKFKDAFNTTLLGIQGSGW 141
Query: 127 AWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDF 186
WL + +D + + + +P+ +P+ +D+WEHAY+L +
Sbjct: 142 GWLVTDGPKGKLD----------------ITTTHDQDPVT-GAAPVFGVDMWEHAYYLQY 184
Query: 187 ENRRPNY 193
N + +Y
Sbjct: 185 LNDKASY 191
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces
Cerevisiae
Length = 215
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 92/216 (42%), Gaps = 38/216 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLP 66
ALEP++S E H+ KHH+ YV N T +D L D++ + N M+
Sbjct: 20 GALEPYISGQINELHYTKHHQTYVNGFN-----TAVDQFQELSDLLAKEPSPANARKMIA 74
Query: 67 PFNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAA 119
N NH FW I+ FGS D ++ + A
Sbjct: 75 IQQNIKFHGGGFTNHCLFWENLAPESQGGGEPPTGALAKAIDEQFGSLDELIKLTNTKLA 134
Query: 120 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTID 176
GSGWA++ V N N KL VV++ N PLV PL+ ID
Sbjct: 135 GVQGSGWAFI--------VKNLSN------GGKLDVVQTYNQDTVTGPLV----PLVAID 176
Query: 177 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
WEHAY+L ++N++ +Y + +V+W+ S+R +
Sbjct: 177 AWEHAYYLQYQNKKADYFKAIWN-VVNWKEASRRFD 211
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|B Chain B, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|C Chain C, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|D Chain D, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|E Chain E, Superoxide Dismutase From Sulfolobus Acidocaldarius
pdb|1B06|F Chain F, Superoxide Dismutase From Sulfolobus Acidocaldarius
Length = 210
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 21/205 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN- 69
+ALEP++SKD ++ H+ HH+ YV N + L+ + D+ Y+ +L
Sbjct: 19 DALEPYISKDIIDVHYNGHHKGYVNGANSLL--DRLEKLIKGDLPQGQYDLQGILRGLTF 76
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXX--IERDFGSFDRFLEEFKSAAATQFGSGWA 127
N H +W I++ +GSFDRF + F +A + GSGW
Sbjct: 77 NINGHKLHAIYWNNMAPAGKGGGKPGGALADLIDKQYGSFDRFKQVFSESANSLPGSGWT 136
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
L Y DN + L ++ N + + +L +D +EHAY+L ++
Sbjct: 137 VLYY-------DN--------ESGNLQIMTVENHFMNHIAELPVILIVDEFEHAYYLQYK 181
Query: 188 NRRPNYISVFMDKLVSWEVVSKRLE 212
N+R +Y++ + + +V+W+ KRL+
Sbjct: 182 NKRGDYLNAWWN-VVNWDDAEKRLQ 205
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant.
pdb|1WB7|B Chain B, Iron Superoxide Dismutase (Fe-Sod) From The
Hyperthermophile Sulfolobus Solfataricus. Crystal
Structure Of The Y41f Mutant
Length = 210
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 21/205 (10%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFN- 69
+ALEP++SKD ++ H+ HH+ +V N + L+ + D+ Y+ ++
Sbjct: 19 DALEPYISKDIIDVHYNGHHKGFVNGANSLL--ERLEKVVKGDLQTGQYDIQGIIRGLTF 76
Query: 70 NAAQAWNHEFFWXXXXXXXXXXXXXXXXXX--IERDFGSFDRFLEEFKSAAATQFGSGWA 127
N H +W I + +GSFDRF + F A + G+GWA
Sbjct: 77 NINGHKLHALYWENMAPSGKGGGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWA 136
Query: 128 WLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYFLDFE 187
L Y N L ++ N + + +L +D +EHAY+L ++
Sbjct: 137 VLYYDTESGN---------------LQIMTFENHFQNHIAEIPIILILDEFEHAYYLQYK 181
Query: 188 NRRPNYISVFMDKLVSWEVVSKRLE 212
N+R +Y++ + + +V+W+ K+L+
Sbjct: 182 NKRADYVNAWWN-VVNWDAAEKKLQ 205
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|B Chain B, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|C Chain C, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|D Chain D, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|E Chain E, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|F Chain F, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|G Chain G, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|H Chain H, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|I Chain I, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|J Chain J, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|K Chain K, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|L Chain L, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|M Chain M, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|N Chain N, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|O Chain O, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|P Chain P, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|Q Chain Q, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|R Chain R, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|S Chain S, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|T Chain T, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|U Chain U, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|V Chain V, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|W Chain W, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
pdb|1P7G|X Chain X, Crystal Structure Of Superoxide Dismutase From Pyrobaculum
Aerophilum
Length = 222
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 16/113 (14%)
Query: 100 IERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSP 159
I + FGSF++F EEF AA G GWA L Y+ P E+ ++ ++
Sbjct: 115 INKFFGSFEKFKEEFSQAAKNVEGVGWAILVYE-------------PLEEQLLILQIEKH 161
Query: 160 NAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
N + D LL +DVWEHAY+L ++N R +Y+ + + +V+W+ V +RL+
Sbjct: 162 NLXHAA--DAQVLLALDVWEHAYYLQYKNDRGSYVDNWWN-VVNWDDVERRLQ 211
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|B Chain B, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|C Chain C, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
pdb|3LSU|D Chain D, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae
Length = 207
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 87/216 (40%), Gaps = 38/216 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLP 66
ALEP++S E H+ HH+ YV N T +D L D++ + N M+
Sbjct: 12 GALEPYISGQINELHYTXHHQTYVNGFN-----TAVDQFQELSDLLAXEPSPANARXMIA 66
Query: 67 PFNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAA 119
N NH FW I+ FGS D + + A
Sbjct: 67 IQQNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLA 126
Query: 120 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTID 176
GSGWA++ N+ N L VV++ N PLV PL+ ID
Sbjct: 127 GVQGSGWAFIV-----XNLSNG---------GXLDVVQTYNQDTVTGPLV----PLVAID 168
Query: 177 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
WEHAY+L ++N +Y + +V+W S+R +
Sbjct: 169 AWEHAYYLQYQNXXADYFXAIWN-VVNWXEASRRFD 203
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic
Bacterium
Length = 212
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 7 LSRQNALEPH----MSKDTLEYHWGKHHRAYVENLNK---QIVGTELDGMSLEDVIIVSY 59
L ++ L+P +S + +E H+ H++ YV N+ ++ S + Y
Sbjct: 5 LEPKDHLKPQNLEGISNEQIEPHFEAHYKGYVAKYNEIQEKLADQNFADRSKANQNYSEY 64
Query: 60 NKGNMLPPFNNAAQAWNHEFFWXXXXXXXXXXXXXXXXXXIERDFGSFDRFLEEFKSAAA 119
+ + FN HE ++ IE D G D E K AAA
Sbjct: 65 RELKVEETFNYMGVVL-HELYFGMLTPGGKGEPSEALKKKIEEDIGGLDACTNELK-AAA 122
Query: 120 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYS---PLLTID 176
F GWA L ++ F +VV +A N V++ + PL+ ID
Sbjct: 123 MAF-RGWAILG-----------LDIFSGR-----LVVNGLDAHN--VYNLTGLIPLIVID 163
Query: 177 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
+EHAY++D++N+RP YI F K ++W+VV++R E
Sbjct: 164 TYEHAYYVDYKNKRPPYIDAFF-KNINWDVVNERFE 198
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|B Chain B, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|C Chain C, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
pdb|4E4E|D Chain D, Crystal Structure Of The Y34f Mutant Of Saccharomyces
Cerevisiae Manganese Superoxide Dismutase
Length = 207
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 87/216 (40%), Gaps = 38/216 (17%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMS-LEDVIIVSYNKGN---MLP 66
ALEP++S E H+ HH+ +V N T +D L D++ + N M+
Sbjct: 12 GALEPYISGQINELHYTXHHQTFVNGFN-----TAVDQFQELSDLLAXEPSPANARXMIA 66
Query: 67 PFNN----AAQAWNHEFFWXXXXXXXXXXX---XXXXXXXIERDFGSFDRFLEEFKSAAA 119
N NH FW I+ FGS D + + A
Sbjct: 67 IQQNIXFHGGGFTNHCLFWENLAPESQGGGEPPTGALAXAIDEQFGSLDELIXLTNTXLA 126
Query: 120 TQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN---AVNPLVWDYSPLLTID 176
GSGWA++ N+ N L VV++ N PLV PL+ ID
Sbjct: 127 GVQGSGWAFIVX-----NLSNG---------GXLDVVQTYNQDTVTGPLV----PLVAID 168
Query: 177 VWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212
WEHAY+L ++N +Y + +V+W S+R +
Sbjct: 169 AWEHAYYLQYQNXXADYFXAIWN-VVNWXEASRRFD 203
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida
Albicans
Length = 206
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 81/207 (39%), Gaps = 28/207 (13%)
Query: 11 NALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPF 68
+ALEP++SK+ + H KHH AYV N I E + L+ V+ + N F
Sbjct: 18 DALEPYISKEINDLHINKHHVAYVNGYNAAIDALEKAVGKRDLKSVVEIQQN-----IKF 72
Query: 69 NNAAQAWNHEFFWXXXXXXXXXX-----XXXXXXXXIERDFGSFDRFLEEFKSAAATQFG 123
+ NH FW I +GS ++ S A G
Sbjct: 73 HGGGHT-NHSLFWKNLAPVSKGGGKHPDTSSALGKQIVAQYGSVSNLIDITNSKLAGIQG 131
Query: 124 SGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYF 183
SGWA++ V N N L VV + N P++ ID WEHAY+
Sbjct: 132 SGWAFI--------VKNKQN------GGALDVVTTANQDTISAPHLVPIIAIDAWEHAYY 177
Query: 184 LDFENRRPNYISVFMDKLVSWEVVSKR 210
L ++N + +Y + +++W R
Sbjct: 178 LQYQNVKLDYFKAIWN-VINWAEAESR 203
>pdb|3RKO|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
pdb|3RKO|C Chain C, Crystal Structure Of The Membrane Domain Of Respiratory
Complex I From E. Coli At 3.0 Angstrom Resolution
Length = 509
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 24 YHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIV 57
Y HRAY QI EL GMSL ++ ++
Sbjct: 435 YSLAMLHRAYFGKAKSQIASQELPGMSLRELFMI 468
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,744,612
Number of Sequences: 62578
Number of extensions: 245487
Number of successful extensions: 717
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 105
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)