Query 025370
Match_columns 254
No_of_seqs 178 out of 1163
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02685 iron superoxide dismu 100.0 4.9E-81 1.1E-85 568.7 22.8 249 3-254 49-297 (299)
2 COG0605 SodA Superoxide dismut 100.0 7.8E-74 1.7E-78 496.5 19.9 195 3-216 6-203 (204)
3 PLN02184 superoxide dismutase 100.0 6.6E-74 1.4E-78 502.6 19.2 197 3-216 13-209 (212)
4 PRK10543 superoxide dismutase; 100.0 2E-72 4.4E-77 487.1 18.8 188 3-212 5-192 (193)
5 PLN02622 iron superoxide dismu 100.0 5.5E-71 1.2E-75 496.3 19.6 199 3-216 50-249 (261)
6 PRK10925 superoxide dismutase; 100.0 5.8E-71 1.3E-75 482.3 18.0 192 3-214 5-205 (206)
7 PTZ00078 Superoxide dismutase 100.0 1.2E-70 2.7E-75 476.0 19.2 190 5-216 2-192 (193)
8 PLN02471 superoxide dismutase 100.0 1.4E-67 3.1E-72 467.2 18.8 191 3-215 33-230 (231)
9 KOG0876 Manganese superoxide d 100.0 3.2E-67 6.9E-72 459.4 18.4 197 3-216 30-231 (234)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 8.2E-45 1.8E-49 286.5 11.3 106 90-211 1-106 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 99.9 2.6E-27 5.7E-32 179.1 2.9 79 3-85 4-82 (82)
12 PF10669 Phage_Gp23: Protein g 65.9 3.7 7.9E-05 32.3 1.5 14 222-235 47-60 (121)
13 PF13348 Y_phosphatase3C: Tyro 38.2 34 0.00073 24.0 2.6 19 95-113 33-51 (68)
14 PLN03106 TCP2 Protein TCP2; Pr 32.7 23 0.0005 34.0 1.3 25 217-241 207-231 (447)
15 TIGR02118 conserved hypothetic 31.7 41 0.00089 25.5 2.4 22 15-37 10-31 (100)
16 PF12196 hNIFK_binding: FHA Ki 30.5 47 0.001 21.9 2.1 21 225-245 16-36 (41)
17 PF07110 EthD: EthD domain; I 28.5 29 0.00063 25.2 1.0 23 15-37 1-23 (95)
18 PF07295 DUF1451: Protein of u 22.0 3E+02 0.0064 23.0 6.0 39 197-236 61-99 (146)
19 PF05416 Peptidase_C37: Southa 21.5 63 0.0014 31.9 2.1 11 121-131 377-387 (535)
20 PF12826 HHH_2: Helix-hairpin- 20.4 78 0.0017 22.2 1.9 32 94-125 13-44 (64)
No 1
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=4.9e-81 Score=568.75 Aligned_cols=249 Identities=81% Similarity=1.314 Sum_probs=230.1
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCCCCCccccccccchhchhhcc
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWE 82 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~ 82 (254)
|.+|||+|++|||+||++||++||+|||++||++||+++++++++++++++|+..+...+....+||+|||||||+|||+
T Consensus 49 Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~t~l~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe 128 (299)
T PLN02685 49 LKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWE 128 (299)
T ss_pred cCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcCchhhcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999889999999998766655555569999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCCCC
Q 025370 83 SMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAV 162 (254)
Q Consensus 83 ~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n~~ 162 (254)
||+|++++.|++.|.++|+++|||||+||++|+++|.++|||||+|||++...+++++++||.+...+++|.|++++||+
T Consensus 129 ~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np~~~~~~~~L~i~~t~n~d 208 (299)
T PLN02685 129 SMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLVVVKSPNAV 208 (299)
T ss_pred hcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccccccccCCceeEEeccCCC
Confidence 99998888999999999999999999999999999999999999999998888999999999876678899999999999
Q ss_pred CCCCCCCcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccccccc
Q 025370 163 NPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKARATKREMEEERRKKEEEEENSEDEAV 242 (254)
Q Consensus 163 ~p~~~~~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
+|+..+.+|||||||||||||+||||+|++||++||+++|||++|++||.++.+..++||++|-|++.|+| .+.|||
T Consensus 209 ~pl~~~~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~vINW~~V~~R~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~ 285 (299)
T PLN02685 209 NPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAKARAAQREQEETRTEDEEE---PDSEAV 285 (299)
T ss_pred CCccCCCEeEEEEecchhhhHHHhccChHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cccchH
Confidence 99999999999999999999999999999999999964699999999999999999999999988876544 456899
Q ss_pred eeeecCCCCCCC
Q 025370 243 EVYVDGDESESE 254 (254)
Q Consensus 243 ~~~~~~~~~~~~ 254 (254)
|.|+|.|-.-||
T Consensus 286 ~~~~~~~~~~~~ 297 (299)
T PLN02685 286 EMYLDSDIDVSE 297 (299)
T ss_pred HhhccCcccccc
Confidence 999999876554
No 2
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-74 Score=496.55 Aligned_cols=195 Identities=51% Similarity=0.971 Sum_probs=181.2
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCcc--ccCCCHHHHHHHHhcCCCCCccccccccchhchhh
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFF 80 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~--l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ff 80 (254)
|-.|||+|++|+|+||++||++||+||||+||++||+++++.. +++.++++++......+. .++|++|||+||+||
T Consensus 6 Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~nn~~gh~NH~~f 83 (204)
T COG0605 6 LPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPA--ALFNNAGGHWNHSLF 83 (204)
T ss_pred CCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccH--HHHhcchhhhhHHHH
Confidence 4579999999999999999999999999999999999999843 889999988876543322 489999999999999
Q ss_pred ccccCCC-CCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecC
Q 025370 81 WESMKPG-GGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSP 159 (254)
Q Consensus 81 w~~L~P~-~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~ 159 (254)
|++|+|+ +++.|+|+|+++|+++|||+|+||++|+++|.++|||||+|||++ ..++|.|++|+
T Consensus 84 w~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~----------------~~~kL~i~~t~ 147 (204)
T COG0605 84 WENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYD----------------PDGKLEIVSTY 147 (204)
T ss_pred HhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEEC----------------CCCcEEEEecc
Confidence 9999996 888999999999999999999999999999999999999999997 45699999999
Q ss_pred CCCCCCCCCCcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025370 160 NAVNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 216 (254)
Q Consensus 160 n~~~p~~~~~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~~ 216 (254)
||++|++.+.+|||||||||||||+||||+|++||++||+ +|||++|++||.++++
T Consensus 148 n~~~p~~~~~~PiL~lDvWEHAYYldY~N~R~~Yv~afwn-vVNW~~V~~r~~~a~~ 203 (204)
T COG0605 148 NQDTPLMWGSVPLLGLDVWEHAYYLDYGNRRPDYVEAFWN-VVNWDEVEERFEAAKK 203 (204)
T ss_pred CCCCcccCCCCceEEecchHHHHHHHhccCcHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999996 9999999999998764
No 3
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=6.6e-74 Score=502.62 Aligned_cols=197 Identities=72% Similarity=1.243 Sum_probs=183.4
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCCCCCccccccccchhchhhcc
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWE 82 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~ 82 (254)
|.+|||+|++|||+||++||++||+|||++||++||+++++++++++++.+|+..+...+....+||+|||++||+|||+
T Consensus 13 lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~~~~~l~~ii~~~~~~~~~~~ifnnagg~~NH~~fw~ 92 (212)
T PLN02184 13 LKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWE 92 (212)
T ss_pred CCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcccchHHHHHHhHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999989999999998766555444568999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCCCC
Q 025370 83 SMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAV 162 (254)
Q Consensus 83 ~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n~~ 162 (254)
||+|++++.|++.|+++|+++|||+|+||++|.++|.++|||||+|||++ + ++|.|++|.|++
T Consensus 93 ~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~---------------~--~~L~i~~t~n~~ 155 (212)
T PLN02184 93 SMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS---------------N--EKLKVVKTPNAV 155 (212)
T ss_pred hcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEE---------------C--CEEEEEeecCCC
Confidence 99998778899999999999999999999999999999999999999997 2 689999999999
Q ss_pred CCCCCCCcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025370 163 NPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 216 (254)
Q Consensus 163 ~p~~~~~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~~ 216 (254)
+|++.+.+|||||||||||||+||||+|++||++||+++|||++|++||.++..
T Consensus 156 ~P~~~~~~PlL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~~ 209 (212)
T PLN02184 156 NPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209 (212)
T ss_pred CCccCCCeeEEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999558999999999987643
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=2e-72 Score=487.12 Aligned_cols=188 Identities=50% Similarity=0.948 Sum_probs=177.1
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCCCCCccccccccchhchhhcc
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWE 82 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~ 82 (254)
+.+|||+|++|+|+||++||++||+|||++||++||++++++++++.++.+|+... ...+||+|||++||+|||+
T Consensus 5 lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~~~~~l~~ii~~~-----~~~ifnna~g~~NH~lfw~ 79 (193)
T PRK10543 5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS-----EGGVFNNAAQVWNHTFYWN 79 (193)
T ss_pred CCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCHHHHHHhh-----HHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999889999999988542 1358999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCCCC
Q 025370 83 SMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAV 162 (254)
Q Consensus 83 ~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n~~ 162 (254)
+|+|.+++.|++.|.++|+++|||+|+||++|+++|.++|||||||||++ .+++|.|++|.||+
T Consensus 80 ~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~----------------~~~~L~I~~t~n~~ 143 (193)
T PRK10543 80 CLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKN----------------ADGKLAIVSTSNAG 143 (193)
T ss_pred hcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC----------------CCCCEEEEeccCCC
Confidence 99998777899999999999999999999999999999999999999986 46899999999999
Q ss_pred CCCCCCCcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHH
Q 025370 163 NPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLE 212 (254)
Q Consensus 163 ~p~~~~~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~ 212 (254)
+|++.+.+|||||||||||||+||||+|++||++||+ +|||++|++||.
T Consensus 144 ~p~~~~~~PlL~lDvWEHAYyldY~n~r~~Yv~~~w~-~inW~~v~~r~~ 192 (193)
T PRK10543 144 TPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWA-LVNWEFVAKNLA 192 (193)
T ss_pred CCcCCCCEeEEEEecchhhhHHHhccCHHHHHHHHHh-ccCHHHHHHHhc
Confidence 9999889999999999999999999999999999997 999999999984
No 5
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=5.5e-71 Score=496.26 Aligned_cols=199 Identities=55% Similarity=1.037 Sum_probs=182.9
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccCCCHHHHHHHHhcCCCCCccccccccchhchhhc
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFW 81 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~-l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw 81 (254)
|+.+||+|++|||+||++||++||++||++||++||+++++++ ++..++.+|+......+.+..+||+|||++||+|||
T Consensus 50 L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vfnna~g~~NH~~Fw 129 (261)
T PLN02622 50 LKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFNNAAQVWNHDFFW 129 (261)
T ss_pred CCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHHHHHHhHHHHHHHH
Confidence 5789999999999999999999999999999999999998864 677899999866555554556899999999999999
Q ss_pred cccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCCC
Q 025370 82 ESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNA 161 (254)
Q Consensus 82 ~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n~ 161 (254)
++|+|++++.|++.|.++|+++|||+|+||++|+++|.++|||||+|||++ +.+++|.|++|.||
T Consensus 130 ~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d---------------~~~g~L~I~~t~N~ 194 (261)
T PLN02622 130 ESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLK---------------REERRLEVVKTSNA 194 (261)
T ss_pred HccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEe---------------CCCCeEEEEecCCC
Confidence 999998777899999999999999999999999999999999999999998 45688999999999
Q ss_pred CCCCCCCCcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025370 162 VNPLVWDYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 216 (254)
Q Consensus 162 ~~p~~~~~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~~ 216 (254)
++|++.+.+|||||||||||||+||||+|++||++||+++|||++|++||.++.+
T Consensus 195 ~~Pl~~~~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v~~R~~~~~~ 249 (261)
T PLN02622 195 INPLVWDDIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAAMARMARAEA 249 (261)
T ss_pred CCCccCCCEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999646999999999987643
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=5.8e-71 Score=482.27 Aligned_cols=192 Identities=43% Similarity=0.747 Sum_probs=174.3
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCc-cccCCCHHHHHHHHhcCCC--CCccccccccchhchh
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGT-ELDGMSLEDVIIVSYNKGN--MLPPFNNAAQAWNHEF 79 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~-~l~~~~l~~ii~~~~~~~~--~~~ifN~ag~~~NH~f 79 (254)
+.+|||+|++|||+||++||++||+|||++||++||++++++ +++++++.+|+......+. +..+||+|||++||+|
T Consensus 5 lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~NH~~ 84 (206)
T PRK10925 5 LPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSL 84 (206)
T ss_pred CCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHhhcCCHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999986 4778899999865543332 2348899999999999
Q ss_pred hccccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecC
Q 025370 80 FWESMKPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSP 159 (254)
Q Consensus 80 fw~~L~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~ 159 (254)
||+||+|+ +.|++.|+++|+++|||||+||++|+++|.++|||||+|||++ .++|.|++|+
T Consensus 85 fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~-----------------~~~L~i~~t~ 145 (206)
T PRK10925 85 FWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK-----------------GDKLAVVSTA 145 (206)
T ss_pred HHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe-----------------CCEEEEEecc
Confidence 99999994 4799999999999999999999999999999999999999996 2689999999
Q ss_pred CCCCCCCC------CCcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHH
Q 025370 160 NAVNPLVW------DYSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIA 214 (254)
Q Consensus 160 n~~~p~~~------~~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a 214 (254)
||++|++. +.+|||||||||||||+||||+|++||++||+ +|||++|++||..+
T Consensus 146 N~~~p~~~~~~~~~~~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~-~inW~~v~~r~~~~ 205 (206)
T PRK10925 146 NQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAK 205 (206)
T ss_pred CCCCCccccccccCCCceeEEEechHHHhHHHHccCHHHHHHHHHh-ccCHHHHHHHHHhc
Confidence 99999874 34899999999999999999999999999997 99999999999864
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=1.2e-70 Score=475.97 Aligned_cols=190 Identities=45% Similarity=0.853 Sum_probs=177.2
Q ss_pred cccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCCCCCccccccccchhchhhcccc
Q 025370 5 FLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWESM 84 (254)
Q Consensus 5 ~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~~L 84 (254)
+|||.|++|+|+||++||++||++||++||++||++++++++++.++.+++.... ..+||+|||++||+|||++|
T Consensus 2 ~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~~~~~~~~ii~~~~-----~~~~n~a~g~~NH~lfw~~L 76 (193)
T PTZ00078 2 KLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYS-----GAVFNNAAQIWNHNFYWLSM 76 (193)
T ss_pred CCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999998888899999875432 25899999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCCCCCC
Q 025370 85 KPGGGGKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNP 164 (254)
Q Consensus 85 ~P~~~~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n~~~p 164 (254)
+|++++.|++.|+++|+++|||+|+||++|+++|.++|||||||||++ .+++|.|++|+|+++|
T Consensus 77 ~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~----------------~~~~L~i~~t~n~~~p 140 (193)
T PTZ00078 77 GPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK----------------NDGKLEIVQTHDAGNP 140 (193)
T ss_pred CCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC----------------CCCcEEEEeccCCCCC
Confidence 998777899999999999999999999999999999999999999974 4689999999999999
Q ss_pred CCCC-CcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025370 165 LVWD-YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 216 (254)
Q Consensus 165 ~~~~-~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~~ 216 (254)
++.+ .+|||||||||||||+||||+|++||++||+ +|||++|++||.+++.
T Consensus 141 ~~~~~~~PlL~lDvWEHAYyldY~n~r~~Yi~~~w~-~inW~~v~~r~~~~~~ 192 (193)
T PTZ00078 141 IKDNTGKPLLTCDIWEHAYYIDYRNDRASYVNSWWN-KVNWDFANKNLKKLMQ 192 (193)
T ss_pred ccCCCCceEEEeccchhhhHHHHccCHHHHHHHHHH-ccCHHHHHHHHHHHhc
Confidence 9764 7999999999999999999999999999997 9999999999998764
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=1.4e-67 Score=467.25 Aligned_cols=191 Identities=34% Similarity=0.608 Sum_probs=167.5
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCcc--ccCCCHHHHHHHHhcCCCCCccccccccchhchhh
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE--LDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFF 80 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~--l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ff 80 (254)
+.+|||.|++|+|+||++||++||+|||++||++||+++++.. .+..++.+++.. ...++|++||++||+||
T Consensus 33 lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~~~n~gg~~NH~~f 106 (231)
T PLN02471 33 LPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAIKFNGGGHVNHSIF 106 (231)
T ss_pred CCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhhhhHHHHHHhHHHH
Confidence 4579999999999999999999999999999999999997632 234455555432 12478889999999999
Q ss_pred ccccCCC--CCCC-CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEee
Q 025370 81 WESMKPG--GGGK-PSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVK 157 (254)
Q Consensus 81 w~~L~P~--~~~~-P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~ 157 (254)
|+||+|. +++. |++.|.++|+++|||+|+||++|.++|.++|||||+|||++ +.+++|.|++
T Consensus 107 w~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d---------------~~~~~L~i~~ 171 (231)
T PLN02471 107 WKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLD---------------KELKKLVVET 171 (231)
T ss_pred HhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEe---------------CCCCeEEEEe
Confidence 9999984 3334 68999999999999999999999999999999999999998 4568999999
Q ss_pred cCCCCCCCCCC--CcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHH
Q 025370 158 SPNAVNPLVWD--YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAK 215 (254)
Q Consensus 158 t~n~~~p~~~~--~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~ 215 (254)
|+||++|+..+ .+|||||||||||||+||||+|++||++||+ +|||++|++||.++|
T Consensus 172 t~n~d~~~~~~~~~~PiL~iDvWEHAYylDY~n~R~~Yi~~~w~-~inW~~v~~r~~~~~ 230 (231)
T PLN02471 172 TANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWK-VMNWKYASEVYEKEC 230 (231)
T ss_pred ecCCCCCcccCCCCceEEEeechhhHhHHHhccCHHHHHHHHHH-ccCHHHHHHHHHhhc
Confidence 99999886554 5899999999999999999999999999997 899999999998765
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-67 Score=459.42 Aligned_cols=197 Identities=47% Similarity=0.895 Sum_probs=179.2
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCcc-ccCCCHHHHHHHHhcCCCCCccccccccchhchhhc
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTE-LDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFW 81 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~-l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw 81 (254)
++.+||.|++|||.||+++|++||+|||++||++||++++++. +.++....++. ++..+.+.+.||+||+++||+|||
T Consensus 30 lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~~~~~a~~Fn~~~~~~Nh~fFw 108 (234)
T KOG0876|consen 30 LPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAIAPQPAPKFNGAGHIYNHSFFW 108 (234)
T ss_pred CCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hccChhhhhhcCCccccccchhhh
Confidence 5778999999999999999999999999999999999999876 44444444443 667777889999999999999999
Q ss_pred cccCCCCCCCCcHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCC
Q 025370 82 ESMKPGGGGKPSGE-LLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPN 160 (254)
Q Consensus 82 ~~L~P~~~~~P~~~-L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n 160 (254)
++|.|++++.|.+. |.++|+++|||+++|+++|.+++.++|||||+|||++ ...++|.|++|+|
T Consensus 109 ~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~---------------~~~~kL~i~~T~N 173 (234)
T KOG0876|consen 109 ENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYN---------------KELKKLFILTTYN 173 (234)
T ss_pred hhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEc---------------CCCCeEEEEecCC
Confidence 99999888888776 9999999999999999999999999999999999998 3458999999999
Q ss_pred CCCCCCCC---CcceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHHHHHHH
Q 025370 161 AVNPLVWD---YSPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRLEIAKA 216 (254)
Q Consensus 161 ~~~p~~~~---~~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~~~a~~ 216 (254)
|.+|+.++ .+|||||||||||||+||||+|++||++||+ +|||++|++||..+++
T Consensus 174 a~~P~~~~t~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd-~inW~~v~~R~~~~k~ 231 (234)
T KOG0876|consen 174 AGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWD-VINWKVVSERFEAAKI 231 (234)
T ss_pred CCCCeeccCCCccceEEEecchhHhHHHhccchHHHHHHHHH-HhcHHHHHHHHHHhhh
Confidence 99999876 8999999999999999999999999999997 9999999999996554
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=8.2e-45 Score=286.53 Aligned_cols=106 Identities=54% Similarity=1.117 Sum_probs=100.5
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEecCcccccCCCCCCCCCCCCceEEeecCCCCCCCCCCC
Q 025370 90 GKPSGELLELIERDFGSFDRFLEEFKSAAATQFGSGWAWLAYKANRLNVDNAVNPFPSEKDKKLVVVKSPNAVNPLVWDY 169 (254)
Q Consensus 90 ~~P~~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsGWvWLv~~~~~l~~~~~~~p~~~~~~~~L~i~~t~n~~~p~~~~~ 169 (254)
|+|++.|.++|+++|||+|+||++|.++|.++|||||+|||++ +.+++|.|+++.|+++|+..+.
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d---------------~~~~~L~i~~t~n~~~p~~~~~ 65 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYD---------------PSDGKLSIISTPNHDTPIIWGL 65 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEE---------------TTTTEEEEEEEETTTBGGGGTE
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeec---------------cccceeeeeeecccccccchhh
Confidence 4799999999999999999999999999999999999999998 5789999999999999999999
Q ss_pred cceEEeecchhhhHHhhccChHHHHHHHHhcCCChHHHHHHH
Q 025370 170 SPLLTIDVWEHAYFLDFENRRPNYISVFMDKLVSWEVVSKRL 211 (254)
Q Consensus 170 ~PLL~iDvWEHAYylDYgn~R~~Yi~~~w~~~InW~~V~~r~ 211 (254)
+|||||||||||||+||||+|++||++||+ +|||++|++||
T Consensus 66 ~Pll~iD~weHaY~~dy~~~r~~Yv~~~~~-~inW~~v~~r~ 106 (106)
T PF02777_consen 66 IPLLCIDVWEHAYYLDYGNKRADYVEAFWN-VINWEVVEKRY 106 (106)
T ss_dssp EEEEEEE-SGGGTHHHHTTHHHHHHHHHGG-GBBHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHhccHHHHHHHHHH-HcCHHHHHhhC
Confidence 999999999999999999999999999996 89999999997
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.93 E-value=2.6e-27 Score=179.14 Aligned_cols=79 Identities=44% Similarity=0.696 Sum_probs=68.0
Q ss_pred cccccCccCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCHHHHHHHHhcCCCCCccccccccchhchhhcc
Q 025370 3 IKFLLSRQNALEPHMSKDTLEYHWGKHHRAYVENLNKQIVGTELDGMSLEDVIIVSYNKGNMLPPFNNAAQAWNHEFFWE 82 (254)
Q Consensus 3 ~~~~~~~~~~Lep~iS~~tl~~H~~khh~~YV~~LN~~~~~~~l~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~ 82 (254)
|..|||+|++|||+||++||++||+|||++||++||+++++++++.+++.+++.... +..+||+|||+|||+|||+
T Consensus 4 Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~~~~~~~~~~~~~~----~~~~~nn~gg~~NH~~fw~ 79 (82)
T PF00081_consen 4 LPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTELEGKSLEEIISNAL----RAALRNNAGGHYNHSFFWE 79 (82)
T ss_dssp ----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHHHTSTHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhh----hHHHHHHcchhhhHHHHHH
Confidence 568999999999999999999999999999999999999999999999999986532 3479999999999999999
Q ss_pred ccC
Q 025370 83 SMK 85 (254)
Q Consensus 83 ~L~ 85 (254)
||+
T Consensus 80 ~ls 82 (82)
T PF00081_consen 80 NLS 82 (82)
T ss_dssp TB-
T ss_pred HcC
Confidence 995
No 12
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=65.93 E-value=3.7 Score=32.31 Aligned_cols=14 Identities=57% Similarity=0.821 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhh
Q 025370 222 EMEEERRKKEEEEE 235 (254)
Q Consensus 222 ~~~~~~~~~~~~~~ 235 (254)
+|||||.|+|++++
T Consensus 47 ~MKEER~K~E~~~q 60 (121)
T PF10669_consen 47 RMKEERSKKEEKRQ 60 (121)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554444
No 13
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=38.18 E-value=34 Score=24.03 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 025370 95 ELLELIERDFGSFDRFLEE 113 (254)
Q Consensus 95 ~L~~~I~~sFGS~d~fk~~ 113 (254)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4568999999999999744
No 14
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=32.65 E-value=23 Score=33.99 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHhhhcccccc
Q 025370 217 RATKREMEEERRKKEEEEENSEDEA 241 (254)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (254)
+++-||++.||+.||+|+|+...-|
T Consensus 207 R~karerarertaKEkEkE~~n~~A 231 (447)
T PLN03106 207 RDKARERARERTAKEKEKEDHNHAA 231 (447)
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 5567999999999999998765443
No 15
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=31.72 E-value=41 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 025370 15 PHMSKDTLEYHWGKHHRAYVENL 37 (254)
Q Consensus 15 p~iS~~tl~~H~~khh~~YV~~L 37 (254)
| +|.++++.||..+|..++.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999998875
No 16
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=30.50 E-value=47 Score=21.86 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhccccccceee
Q 025370 225 EERRKKEEEEENSEDEAVEVY 245 (254)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~ 245 (254)
-||||-|..|-|.+|+--|+.
T Consensus 16 LErRKS~~~emndDd~D~EIv 36 (41)
T PF12196_consen 16 LERRKSEVAEMNDDDEDDEIV 36 (41)
T ss_dssp HHHHHHHHHH--GGGGS-SEE
T ss_pred HHHhhhhhhcccCCCcCCeeE
Confidence 478888888877666655554
No 17
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=28.46 E-value=29 Score=25.24 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 025370 15 PHMSKDTLEYHWGKHHRAYVENL 37 (254)
Q Consensus 15 p~iS~~tl~~H~~khh~~YV~~L 37 (254)
|.||.+.+..||...|..+|..+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~ 23 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRL 23 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHh
Confidence 78999999999999888877654
No 18
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.01 E-value=3e+02 Score=22.97 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=30.4
Q ss_pred HHhcCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhc
Q 025370 197 FMDKLVSWEVVSKRLEIAKARATKREMEEERRKKEEEEEN 236 (254)
Q Consensus 197 ~w~~~InW~~V~~r~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (254)
.|. .++|..|++++-......++|++=|-+.=.+.-+-+
T Consensus 61 ~~~-~~~~~lie~slw~~L~~ItDkTqvEw~el~~d~~h~ 99 (146)
T PF07295_consen 61 EWL-SPDLQLIEESLWDELSSITDKTQVEWAELAQDLEHH 99 (146)
T ss_pred hhc-cccHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhc
Confidence 554 589999999999999999999998665554444443
No 19
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C37, (clan PA(C)). The type example is calicivirin from Southampton virus, an endopeptidase that cleaves the polyprotein at sites N-terminal to itself, liberating the polyprotein helicase. Southampton virus is a positive-stranded ssRNA virus belonging to the Caliciviruses, which are viruses that cause gastroenteritis. The calicivirus genome contains two open reading frames, ORF1 and ORF2. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity []. The regions of the polyprotein in which these activities lie are similar to proteins produced by the picornaviruses []. ORF2 encodes a structural, capsid protein. Two different families of caliciviruses can be distinguished on the basis of sequence similarity, namely the Norwalk-like viruses or small round structured viruses (SRSVs), and those classed as non-SRSVs.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 2FYQ_A 2FYR_A 1WQS_D 4ASH_A 2IPH_B.
Probab=21.48 E-value=63 Score=31.92 Aligned_cols=11 Identities=45% Similarity=1.202 Sum_probs=9.5
Q ss_pred CCCceEEEEEE
Q 025370 121 QFGSGWAWLAY 131 (254)
Q Consensus 121 ~fGsGWvWLv~ 131 (254)
.|||||.+.|.
T Consensus 377 ~fGsGWGfWVS 387 (535)
T PF05416_consen 377 KFGSGWGFWVS 387 (535)
T ss_dssp EETTEEEEESS
T ss_pred ecCCceeeeec
Confidence 59999999884
No 20
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=20.38 E-value=78 Score=22.24 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCce
Q 025370 94 GELLELIERDFGSFDRFLEEFKSAAATQFGSG 125 (254)
Q Consensus 94 ~~L~~~I~~sFGS~d~fk~~F~~~A~~~fGsG 125 (254)
..-.+.|-+.|||++++.+.=...-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45678889999999998766444444454444
Done!