BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025371
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FNN|A Chain A, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
pdb|1FNN|B Chain B, Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
Length = 389
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158
HY ++ L +GRPG GKT +R++ + D+ R V ++
Sbjct: 43 HYPRATL-LGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 108 VSGHIDMVYDLLHYGKS-----ILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSN 161
+ G +V L HY K+ +LF G PGVGKTT +AR L E ++ + ++ S+
Sbjct: 27 IVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86
Query: 162 EIG 164
E G
Sbjct: 87 ERG 89
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144
H + YDLL+ + I+ G PG GKT +M R
Sbjct: 1256 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1289
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144
H + YDLL+ + I+ G PG GKT +M R
Sbjct: 1037 HEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR 1070
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEF 150
+ I VG G GKTTV RE+AR L EF
Sbjct: 3 EPIFMVGARGCGKTTVGRELARALGYEF 30
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159
++FVG G GKTT+ E R L D ++ V +DT
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 74 KGVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR---- 120
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
+ + E + H P ++ +DEI
Sbjct: 121 ------VRDLFETAKRHAPCIVFIDEI 141
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 65 KGVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR---- 111
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
+ + E + H P ++ +DEI
Sbjct: 112 ------VRDLFETAKRHAPCIVFIDEI 132
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAG------EARVPFITAS---GSDFVEMFVGVGAAR---- 120
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
+ + E + H P ++ +DEI
Sbjct: 121 ------VRDLFETAKRHAPCIVFIDEI 141
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
K +L VG PGVGKT + R +A + RV + S G D +G AR
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAG------EARVPFITAS---GSDFVEMFVGVGAAR---- 96
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
+ + E + H P ++ +DEI
Sbjct: 97 ------VRDLFETAKRHAPCIVFIDEI 117
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 19/88 (21%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 181
K +L G PG GKT + R +A S F TS +G + + AR MQ
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ 113
Query: 182 VPEPSLQHKVMIEAVENHMPEVIIVDEI 209
P +I +DE+
Sbjct: 114 -------------------PSIIFIDEV 122
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 125 ILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
+LF G PG GKT+ + + + L D + R++ ++ S+E G I + R+ V
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG--ISIVREKVKNFARLTV 118
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDE 208
+PS K +E ++II+DE
Sbjct: 119 SKPS---KHDLENYPCPPYKIIILDE 141
>pdb|2P5T|B Chain B, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|D Chain D, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|F Chain F, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
pdb|2P5T|H Chain H, Molecular And Structural Characterization Of The Pezat
Chromosomal Toxin-Antitoxin System Of The Human Pathogen
Streptococcus Pneumoniae
Length = 253
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158
+IL G+ G GKTT I R+ EFQ +VI+D
Sbjct: 34 AILLGGQSGAGKTT----IHRIKQKEFQGNIVIID 64
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 119 LHYGKSILFVGRPGVGKTTVMREIA 143
+H G+ ++FVG G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 119 LHYGKSILFVGRPGVGKTTVMREIA 143
+H G+ ++FVG G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 119 LHYGKSILFVGRPGVGKTTVMREIA 143
+H G+ ++FVG G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A
Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151
+Y ++ VG PG GK+T+ E+ +++++++
Sbjct: 22 NYRVCVILVGSPGSGKSTIAEELXQIINEKYH 53
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Selenocysteine Trna And Amppnp (Crystal Type 3)
Length = 259
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 125 ILFVGRPGVGKTTVMREIARVLS 147
I+ G PGVGK+T + +A++LS
Sbjct: 14 IILTGLPGVGKSTFSKNLAKILS 36
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
Length = 173
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEF 150
+ I VG G G TTV RE+AR L EF
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEF 30
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 124 SILFVGRPGVGKTTVMREIA 143
+IL G PGVGKTT+ +E+A
Sbjct: 6 NILLTGTPGVGKTTLGKELA 25
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase Complexed
With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 125 ILFVGRPGVGKTTVMREIARVLS 147
I+ G PGVGK+T + +A++LS
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILS 29
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 124 SILFVGRPGVGKTTVMREIA 143
+IL G PGVGKTT+ +E+A
Sbjct: 13 NILLTGTPGVGKTTLGKELA 32
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 25 RGQLLEVILDLGRLPE--ARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGDNRAGIEG 82
R + +EV+L R+ E YL EF GK +S E LE V E + +
Sbjct: 451 RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTP 510
Query: 83 TLHRISAIRSRKGAIVGLTCRV 104
+ R+ A+ + V LT R+
Sbjct: 511 FIDRVKALLGERVKDVRLTHRL 532
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 25 RGQLLEVILDLGRLPE--ARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGDNRAGIEG 82
R + +EV+L R+ E YL EF GK +S E LE V E + +
Sbjct: 451 RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTP 510
Query: 83 TLHRISAIRSRKGAIVGLTCRV 104
+ R+ A+ + V LT R+
Sbjct: 511 FIDRVKALLGERVKDVRLTHRL 532
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156
L +GK++L +PG+GKT VL + +K+V+I
Sbjct: 23 LKHGKTLLLNAKPGLGKTV----FVEVLGMQLKKKVLI 56
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 120 HYGKSIL-FVGRPGVGKTTVMREIA 143
H GK ++ VGRP VGK+T+ IA
Sbjct: 20 HMGKPVVAIVGRPNVGKSTIFNRIA 44
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 132 GVGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIPHSAI----G 175
G + REI +VL+D F V ++DT+N + G D+P S +
Sbjct: 440 ATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAP 499
Query: 176 TARRMQVPEP 185
R P P
Sbjct: 500 NPRLAATPSP 509
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 132 GVGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIPHSAI----G 175
G + REI +VL+D F V ++DT+N + G D+P S +
Sbjct: 440 ATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAP 499
Query: 176 TARRMQVPEP 185
R P P
Sbjct: 500 NPRLAATPSP 509
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148
H+D+++ L + ++ G PG GKT + R D
Sbjct: 1293 HVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD 1330
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148
H+D+++ L + ++ G PG GKT + R D
Sbjct: 1293 HVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD 1330
>pdb|1Z1S|A Chain A, Crystal Structure Of Putative Isomerase Pa3332 From
Pseudomonas Aeruginosa
Length = 163
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 52 LRSTEVSVEELEYAQSAVGEFGGDNRAGIEG---TLHRISAIRSRKGAIV 98
+R T+V E A+GEF GD A + G IS +R+R G I+
Sbjct: 86 VRFTDVQFYETADPDLAIGEFHGDGVATVSGGKLAQDYISVLRTRDGQIL 135
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR--RM 180
K +L VG PG GKT + + +A G+ +P ++G + M
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVA---------------------GEAHVPFFSMGGSSFIEM 83
Query: 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218
V + + + + E + P +I +DEI ++ A
Sbjct: 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 163
I + D + GK+++ G G GKTT ++ I + E +R++ ++ + EI
Sbjct: 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIXEFIPKE--ERIISIEDTEEI 210
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 125 ILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 183
+LF G PG GKT+ + +AR + + V+ ++ S++ G D R Q+
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID----------VVRNQIK 98
Query: 184 EPSLQHKVMIEAVENHMPEVIIVDEIG--TEAEAHACRSIAER 224
+ + ++ + ++II+DE T A +A R + ER
Sbjct: 99 DFASTRQIFSKGF-----KLIILDEADAMTNAAQNALRRVIER 136
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
G + G PGVGKT++ + IA+ L +F
Sbjct: 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF 136
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 163
I + D + GK+++ G G GKTT ++ I + E +R++ ++ + EI
Sbjct: 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEI 210
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP- 183
I+FVG G GKTT ++A + K +I + G + +A + ++P
Sbjct: 104 IMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNAT----KARIPF 159
Query: 184 -------EPSLQHKVMIEAVENHMPEVIIVDEIG 210
+P + +E +N E+IIVD G
Sbjct: 160 YGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSG 193
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEF 150
++I VG G GK+T+ R++A+ L+ EF
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEF 32
>pdb|2AM1|A Chain A, Sp Protein Ligand 1
pdb|2AM2|A Chain A, Sp Protein Ligand 2
Length = 454
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 134 GKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 193
GKTT +A +LS ++ + +NEIG +P++ + PE + K+++
Sbjct: 110 GKTTTKDXLAHLLSTRYKTYKTQGNYNNEIG----LPYTV------LHXPEGT--EKLVL 157
Query: 194 EAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLEN 239
E ++H+ ++ ++ E+ A V L+G AH + ++
Sbjct: 158 EXGQDHLGDIHLLSELARPKTAI---------VTLVGEAHLAFFKD 194
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
K ++ G PG GKT + + +A S F R+V + + GDG
Sbjct: 217 KGVILYGAPGTGKTLLAKAVANQTSATFL-RIVGSELIQKYLGDG--------------- 260
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
P L ++ A EN P ++ +DEI
Sbjct: 261 --PRLCRQIFKVAGEN-APSIVFIDEI 284
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 91 RSRKGAIVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146
++ +G + L R RA ++M+ + G+++L G+PG GKT + +A+ L
Sbjct: 41 QASQGMVGQLAAR--RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 24/122 (19%)
Query: 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI--PHSAIGT 176
+ G++++F+G PG GK T +A+ L F+K GDI H A GT
Sbjct: 1 MDVGQAVIFLGPPGAGKGTQASRLAQELG--FKKLST-----------GDILRDHVARGT 47
Query: 177 ARRMQVPEPSLQH------KVMIEAVENHMPEVIIVDEIG-TEAEAHAC-RSIAERGVML 228
+V P ++ +++E + + E +I D T A+A A R ++E G L
Sbjct: 48 PLGERV-RPIMERGDLVPDDLILELIREELAERVIFDGFPRTLAQAEALDRLLSETGTRL 106
Query: 229 IG 230
+G
Sbjct: 107 LG 108
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 122 GKSILFVGRPGVGKT 136
GK + FVG PGVGKT
Sbjct: 38 GKGLTFVGSPGVGKT 52
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 122 GKSILFVGRPGVGKT 136
GK + FVG PGVGKT
Sbjct: 38 GKGLTFVGSPGVGKT 52
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 123 KSILFVGRPGVGKTTVMREIA 143
K IL VG PG GKT + R +A
Sbjct: 50 KGILLVGPPGTGKTLLARAVA 70
>pdb|3KJE|A Chain A, Empty State Of Cooc1
pdb|3KJG|A Chain A, Adp-Bound State Of Cooc1
pdb|3KJG|B Chain B, Adp-Bound State Of Cooc1
pdb|3KJH|A Chain A, Zn-Bound State Of Cooc1
pdb|3KJI|A Chain A, Zn And Adp Bound State Of Cooc1
pdb|3KJI|B Chain B, Zn And Adp Bound State Of Cooc1
Length = 254
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%)
Query: 129 GRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE 184
G+ GVGKTTV + ++++ ++ K + DGD P S +G + + E
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAV---------DGD-PDSCLGQTLGLSIEE 52
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3URK|B Chain B, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3UTC|A Chain A, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTC|B Chain B, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTD|A Chain A, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UTD|B Chain B, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UV3|A Chain A, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV3|B Chain B, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV6|A Chain A, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV6|B Chain B, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV7|A Chain A, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UV7|B Chain B, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UWM|A Chain A, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
pdb|3UWM|B Chain B, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
Length = 324
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 42 RYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVG-L 100
+Y GG YL + V +L F ++ T I A+R R IVG
Sbjct: 141 QYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPR 200
Query: 101 TCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160
+ A + + V L + +L VG + + E+A+ + KR ++D +
Sbjct: 201 KDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMG----KRAFLIDDA 256
Query: 161 NEI 163
+I
Sbjct: 257 KDI 259
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE8|B Chain B, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE9|A Chain A, Crystal Structure Of Isph:intermediate-Complex
pdb|3KE9|B Chain B, Crystal Structure Of Isph:intermediate-Complex
pdb|3KEF|A Chain A, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEF|B Chain B, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEL|A Chain A, Crystal Structure Of Isph:pp Complex
pdb|3KEL|B Chain B, Crystal Structure Of Isph:pp Complex
pdb|3KEM|A Chain A, Crystal Structure Of Isph:ipp Complex
pdb|3KEM|B Chain B, Crystal Structure Of Isph:ipp Complex
Length = 326
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 42 RYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVG-L 100
+Y GG YL + V +L F ++ T I A+R R IVG
Sbjct: 143 QYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPR 202
Query: 101 TCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160
+ A + + V L + +L VG + + E+A+ + KR ++D +
Sbjct: 203 KDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMG----KRAFLIDDA 258
Query: 161 NEI 163
+I
Sbjct: 259 KDI 261
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGL|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
Length = 332
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 42 RYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVG-L 100
+Y GG YL + V +L F ++ T I A+R R IVG
Sbjct: 149 QYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPR 208
Query: 101 TCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160
+ A + + V L + +L VG + + E+A+ + KR ++D +
Sbjct: 209 KDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMG----KRAFLIDDA 264
Query: 161 NEI 163
+I
Sbjct: 265 KDI 267
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
pdb|3T0F|B Chain B, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
Length = 328
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 42 RYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVG-L 100
+Y GG YL + V +L F ++ T I A+R R IVG
Sbjct: 145 QYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPR 204
Query: 101 TCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160
+ A + + V L + +L VG + + E+A+ + KR ++D +
Sbjct: 205 KDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMG----KRAFLIDDA 260
Query: 161 NEI 163
+I
Sbjct: 261 KDI 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,551,616
Number of Sequences: 62578
Number of extensions: 309045
Number of successful extensions: 1304
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1260
Number of HSP's gapped (non-prelim): 80
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)