BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025371
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3
SV=1
Length = 565
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 195/244 (79%), Gaps = 2/244 (0%)
Query: 7 FWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQ 66
+ILP +R+ L+ S R L+EV++DLGR PEAR+ G +YL +S ++L+Y
Sbjct: 10 LLEILPHFVREPLKQHSNRKNLIEVVMDLGRRPEARFPG--NPEYLSQRSISWQDLDYCV 67
Query: 67 SAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVGLTCRVGRAVSGHIDMVYDLLHYGKSIL 126
VG F GDNRAGIE TLHRIS++R+R+G+I+GLTCRVGRAV G I ++ DLL G SIL
Sbjct: 68 KKVGNFSGDNRAGIEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDSIL 127
Query: 127 FVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPS 186
+G+PGVGKTT +REIARVLSDE +KRVVI+DTSNEI GDGDIPH AIG ARRMQV +P
Sbjct: 128 LLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAQPD 187
Query: 187 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPIL 246
LQH+VMIEAVENHMPEVII+DEIGTE EA A R+IAERGV L+GTAHG +LE++IKNP L
Sbjct: 188 LQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIKNPTL 247
Query: 247 SDLV 250
+DL+
Sbjct: 248 ADLI 251
>sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3
SV=1
Length = 455
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/240 (60%), Positives = 181/240 (75%), Gaps = 2/240 (0%)
Query: 11 LPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG 70
LP +R + + +L+E+++DLGR PEAR+ G +YL +S +++ + +
Sbjct: 14 LPFLIRQNINQHPSKQKLIEIVIDLGRRPEARFTT--GPEYLSQKVISWQDINHFTKRIS 71
Query: 71 EFGGDNRAGIEGTLHRISAIRSRKGAIVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGR 130
+F DNRAGIE TLHRIS IR+R+ I GLTCR+GRA+ G I V DLL +SIL +G+
Sbjct: 72 KFSNDNRAGIERTLHRISCIRNRQFLINGLTCRIGRAIFGTISSVRDLLESQQSILLLGK 131
Query: 131 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 190
PGVGKTT++REIARVLSDE +KRVVIVDTSNEI GD DIPHSAIG ARRMQV LQH+
Sbjct: 132 PGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQVATTDLQHQ 191
Query: 191 VMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLV 250
+MIEAVENHMP+VI++DEIGTE EA A R+IAE+GV L+GT HG LEN+IKNP LSDL+
Sbjct: 192 IMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIKNPPLSDLI 251
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3
SV=1
Length = 335
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 163/250 (65%), Gaps = 2/250 (0%)
Query: 1 MNAFGAFWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVE 60
N F ++P + L+ ++ L E++LD GR E R+ + + L +++ +
Sbjct: 4 FNDLRHFLPVVPRFVYKSLKKHPRKFGLTEIVLDNGRRAEGRWREK--TENLTHKKITKK 61
Query: 61 ELEYAQSAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVGLTCRVGRAVSGHIDMVYDLLH 120
L +G F DNRAGI TLHRIS I++R G IVGLT R+GR G ++ DL+
Sbjct: 62 HLLRCIKKIGIFNEDNRAGIYQTLHRISCIKNRYGNIVGLTYRIGREFIGIGPIIRDLIE 121
Query: 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM 180
+S L +GRPG+GKT+ +REI+R+LS+E KRV+IVD++NEI G+G PH + G ARRM
Sbjct: 122 SNQSTLLIGRPGIGKTSFIREISRILSNEIMKRVIIVDSANEISGEGCCPHISTGKARRM 181
Query: 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENI 240
+V + QH+VMIEA+ENH PE+II+DEIGTE E+ A SI++RG+ LIG+AH L N+
Sbjct: 182 EVQSINSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAHSSDLFNL 241
Query: 241 IKNPILSDLV 250
KNP L LV
Sbjct: 242 AKNPTLCKLV 251
>sp|Q01367|SP3AA_BACSU Stage III sporulation protein AA OS=Bacillus subtilis (strain 168)
GN=spoIIIAA PE=4 SV=1
Length = 307
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 11/161 (6%)
Query: 97 IVGLTCRVGRAVSGHIDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLSDEFQKRV 154
I R+ R G + + L+ + L +G P GKTT++R++AR LS +K +
Sbjct: 109 IASFNIRIARQKLGIAEPLLPYLYQNSWLNTLIIGPPQTGKTTLLRDLAR-LSSTGKKNM 167
Query: 155 V-----IVDTSNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208
+ IVD +EI G IP G +R+ V + + + ++ + + PEV+IVDE
Sbjct: 168 LPVKTGIVDERSEIAGCLRGIPQHQFG--QRIDVLDACPKAEGLMMMIRSMSPEVMIVDE 225
Query: 209 IGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 249
IG + A GV +I +AHG + +++K P L L
Sbjct: 226 IGRMEDTDALLEALHAGVSVIVSAHGWSISDLMKRPSLKRL 266
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 124 SILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
+I+ G PGVGKTT ++ +AR+ L D +++ V+ ++ SNE G D+ + I + +V
Sbjct: 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERG--IDVVRNKIKMFAQQKV 108
Query: 183 PEPSLQHKVMIEAVENHMPE 202
P +HK++I + M E
Sbjct: 109 TLPRGRHKIVILDEADSMTE 128
>sp|Q550C8|LONM2_DICDI Lon protease homolog, mitochondrial 2 OS=Dictyostelium discoideum
GN=DDB_0217928 PE=3 SV=1
Length = 836
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ 181
GK IL VG PG GKT+V + IA L +F + +GG D+ S I RR
Sbjct: 384 GKVILLVGPPGTGKTSVGKSIANALGRQFHRI--------SVGGLSDV--SEIKGHRRTY 433
Query: 182 VPEPSLQHKVM--IEAVENHMPEVIIVDEI 209
V S+ K++ ++ V+ P VI++DEI
Sbjct: 434 V--ASMPGKIIQALKTVKTSNP-VILIDEI 460
>sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PIM1 PE=1 SV=2
Length = 1133
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 174
GK I FVG PGVGKT++ + IAR L+ +F + V + D + EI G G +P +
Sbjct: 625 GKIICFVGPPGVGKTSIGKSIARALNRKFFRFSVGGMTDVA-EIKGHRRTYIGALPGRVV 683
Query: 175 GTARRMQVPEP 185
++ Q P
Sbjct: 684 QALKKCQTQNP 694
>sp|Q6MTF4|LON_MYCMS Lon protease OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1)
GN=lon PE=3 SV=1
Length = 796
Score = 39.3 bits (90), Expect = 0.024, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGD-----GDIPHSAIG 175
G I FVG PGVGKT++ R IA L +F K + V +EI G G +P I
Sbjct: 369 GPIITFVGPPGVGKTSLARSIAEALGKKFVKVSLGGVKDESEIRGHRKTYVGSMPGRIIQ 428
Query: 176 TARRMQVPEP 185
+R +V P
Sbjct: 429 ALKRAKVKNP 438
>sp|Q6FPE6|LONM_CANGA Lon protease homolog, mitochondrial OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=PIM1 PE=3 SV=1
Length = 1026
Score = 38.9 bits (89), Expect = 0.040, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 174
GK I FVG PGVGKT++ + I+R L+ +F + V + D + EI G G +P I
Sbjct: 490 GKIICFVGPPGVGKTSIGKSISRALNRQFFRFSVGGMTDVA-EIKGHRRTYIGALPGRII 548
Query: 175 GTARRMQVPEP 185
++ Q P
Sbjct: 549 QALKKCQTQNP 559
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
+ +LF G PG GKT + R +A S + +K + DI +G A R
Sbjct: 448 RGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKG------ADILSKWVGEAER--- 498
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
Q +++ E + H P +I DEI
Sbjct: 499 -----QLRLLFEEAKKHQPSIIFFDEI 520
>sp|Q5PQY6|LONP2_DANRE Lon protease homolog 2, peroxisomal OS=Danio rerio GN=lonp2 PE=2
SV=1
Length = 840
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R IAR L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSIARTLGREFHR 398
>sp|Q6CNR9|LONM_KLULA Lon protease homolog, mitochondrial OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PIM1 PE=3 SV=1
Length = 1111
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 174
GK I FVG PGVGKT++ + IAR L+ +F + V + D + EI G G +P I
Sbjct: 595 GKIICFVGPPGVGKTSIGKSIARSLNRQFFRFSVGGMTDVA-EIKGHRRTYIGALPGRVI 653
Query: 175 GTARRMQVPEP 185
++ Q P
Sbjct: 654 QALKKCQTQNP 664
>sp|Q54YV4|LONM1_DICDI Lon protease homolog, mitochondrial 1 OS=Dictyostelium discoideum
GN=DDB_G0278063 PE=3 SV=3
Length = 956
Score = 38.1 bits (87), Expect = 0.055, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 25/95 (26%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 174
GK + F+G PG GKT++ + IA+ L EF + V + D S EI G G +P I
Sbjct: 504 GKILCFIGPPGTGKTSIAKSIAKALKKEFFRFSVGGLFDES-EIKGHRRTYVGSMPGKII 562
Query: 175 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209
+ Q P VI++DEI
Sbjct: 563 QALKITQTSNP-----------------VILIDEI 580
>sp|Q09769|LONM_SCHPO Lon protease homolog, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pim1 PE=3 SV=1
Length = 1067
Score = 37.7 bits (86), Expect = 0.081, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 25/102 (24%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 174
GK + VG PGVGKT+V + IA L+ EF + V + D + EI G G +P +
Sbjct: 571 GKIMCLVGPPGVGKTSVGKSIASALNREFFRFSVGGLTDVA-EIKGHRRTYIGAMPGKIV 629
Query: 175 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216
+++Q P +I++DEI ++H
Sbjct: 630 QALKKVQTENP-----------------LILIDEIDKVGKSH 654
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial OS=Homo sapiens GN=LONP1 PE=1
SV=2
Length = 959
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
GK + F G PGVGKT++ R IAR L+ E+
Sbjct: 516 GKILCFYGPPGVGKTSIARSIARALNREY 544
>sp|Q59HJ6|LONM_BOVIN Lon protease homolog, mitochondrial OS=Bos taurus GN=LONP1 PE=1
SV=1
Length = 961
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
GK + F G PGVGKT++ R IAR L+ E+
Sbjct: 517 GKILCFYGPPGVGKTSIARSIARALNREY 545
>sp|A5WCZ2|ISPH_PSYWF 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Psychrobacter
sp. (strain PRwf-1) GN=ispH PE=3 SV=1
Length = 318
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 42 RYLGEFGGK-YLRSTEVSVEELEYAQSAVGEFGGDNRAGIEGTLHRISAIRSRKGAIVGL 100
R+ ++GG+ +L E VE+LE + F ++ T I A+R + I G
Sbjct: 133 RFSAQYGGEIHLVENEADVEKLEVSDPDRLAFVTQTTLSMDDTAVVIDALRKKFPNIQGP 192
Query: 101 -TCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159
+ A D V DL + +L VG P + +RE+A + + ++D
Sbjct: 193 RKDDICYATQNRQDAVKDLAQRCEVVLVVGSPNSSNSNRLRELA----ERMNCKAYLIDN 248
Query: 160 SNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200
+ E+ + A+G PE ++I+ V N +
Sbjct: 249 AGEMKKEWFAGVGAVGVTAGASAPE------ILIQEVLNQL 283
>sp|Q2TAF8|LONP2_XENLA Lon protease homolog 2, peroxisomal OS=Xenopus laevis GN=lonp2 PE=2
SV=1
Length = 856
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R IA+ L EF +
Sbjct: 372 GPILCFVGPPGVGKTSVGRSIAKTLGREFHR 402
>sp|B0TFI9|LON_HELMI Lon protease OS=Heliobacterium modesticaldum (strain ATCC 51547 /
Ice1) GN=lon PE=3 SV=1
Length = 813
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
G I FVG PGVGKT++ R IAR L +F
Sbjct: 352 GPIICFVGPPGVGKTSLARSIARALERKF 380
>sp|Q3SX23|LONP2_BOVIN Lon protease homolog 2, peroxisomal OS=Bos taurus GN=LONP2 PE=2
SV=1
Length = 852
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q9DBN5|LONP2_MOUSE Lon protease homolog 2, peroxisomal OS=Mus musculus GN=Lonp2 PE=2
SV=1
Length = 852
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q3MIB4|LONP2_RAT Lon protease homolog 2, peroxisomal OS=Rattus norvegicus GN=Lonp2
PE=1 SV=2
Length = 852
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q86WA8|LONP2_HUMAN Lon protease homolog 2, peroxisomal OS=Homo sapiens GN=LONP2 PE=1
SV=1
Length = 852
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana
GN=ABCG30 PE=2 SV=2
Length = 1400
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 94 KGAIVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR 153
KG + C G + V ++ G+ L +G PG GKTT+++ ++ SD
Sbjct: 139 KGLLSEFICSKKETKIGILKGVSGIVRPGRMTLLLGPPGCGKTTLLQALSGKFSD----- 193
Query: 154 VVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213
S ++G G++ ++ G + +PE + + I + H+PE+ + + + A
Sbjct: 194 ------SVKVG--GEVCYN--GCSLSEFIPEKTSSY---ISQNDLHIPELSVRETLDFSA 240
Query: 214 EAHACRSIAERGVMLIGTAHGEWLENIIKNP 244
C+ I R ++ + E L+ II +P
Sbjct: 241 ---CCQGIGSRMEIMKEISRMEKLQEIIPDP 268
>sp|Q9WXP3|NTPTH_THEMA Nucleoside-triphosphatase THEP1 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0036 PE=3
SV=1
Length = 174
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 22/119 (18%)
Query: 124 SILFVGRPGVGKTTVMREIARVLSD----------EFQKR----VVIVDTSNEIGGDGDI 169
IL GRPGVGKTT++++++R+L + E +KR ++ +D I D+
Sbjct: 2 KILITGRPGVGKTTLIKKLSRLLQNAGGFYTEEMREGEKRIGFKIITLDGEEGILARTDL 61
Query: 170 PHSA-IGTARRMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGT-EAEAHACRSIAER 224
P +G + V L+ + + ++E E +IIVDEIG E + R + E+
Sbjct: 62 PSPYRVG---KYYVNLKDLEE-IGVRSLERAFQEKDLIIVDEIGKMELLSRKFREVVEK 116
>sp|Q9UUA2|PIF1_SCHPO DNA repair and recombination protein pif1, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pif1 PE=1 SV=1
Length = 805
Score = 35.8 bits (81), Expect = 0.32, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---RVVIVDTSN----EIG 164
+DMV + H SI F G G GK+ ++R+I VL +++K RV + ++ IG
Sbjct: 318 LDMVVEQQH---SIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTASTGLAACNIG 374
Query: 165 GDGDIPHSAIGTAR 178
G + +G AR
Sbjct: 375 GVTLHSFAGVGLAR 388
>sp|Q8CGK3|LONM_MOUSE Lon protease homolog, mitochondrial OS=Mus musculus GN=Lonp1 PE=1
SV=2
Length = 949
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
GK + F G PGVGKT++ R IAR L E+
Sbjct: 505 GKILCFHGPPGVGKTSIARSIARALGREY 533
>sp|Q924S5|LONM_RAT Lon protease homolog, mitochondrial OS=Rattus norvegicus GN=Lonp1
PE=2 SV=1
Length = 950
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
GK + F G PGVGKT++ R IAR L E+
Sbjct: 506 GKILCFHGPPGVGKTSIARSIARALGREY 534
>sp|Q6C0L7|LONP2_YARLI Lon protease homolog 2, peroxisomal OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YALI0F23595g PE=3 SV=1
Length = 952
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQK 152
+L VG PGVGKT++ + +AR L +FQ+
Sbjct: 489 LLLVGPPGVGKTSLAKSVARALGRKFQR 516
>sp|B8J198|LON_DESDA Lon protease OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
DSM 6949) GN=lon PE=3 SV=1
Length = 880
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + F G PGVGKT++ R +AR L +FQ+
Sbjct: 397 GPILCFAGPPGVGKTSLGRSVARALGRKFQR 427
>sp|Q7KUT2|LONM_DROME Lon protease homolog, mitochondrial OS=Drosophila melanogaster
GN=CG8798 PE=2 SV=1
Length = 1024
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
GK + F G PGVGKT++ + IAR L+ E+
Sbjct: 557 GKILCFHGPPGVGKTSIAKSIARALNREY 585
>sp|Q7S8C4|LONM_NEUCR Lon protease homolog, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=pim1 PE=3 SV=1
Length = 1107
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
GK + FVG PGVGKT++ + IAR L ++ +
Sbjct: 587 GKILCFVGPPGVGKTSIGKSIARALGRQYYR 617
>sp|Q5R6M5|LONP2_PONAB Lon protease homolog 2, peroxisomal OS=Pongo abelii GN=LONP2 PE=2
SV=1
Length = 852
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
G + FVG PGVGKT+V R +A+ L EF +
Sbjct: 368 GPILCFVGPPGVGKTSVGRLVAKTLGREFHR 398
>sp|O14114|YEJJ_SCHPO Uncharacterized AAA domain-containing protein C31G5.19
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC31G5.19 PE=3 SV=1
Length = 1190
Score = 35.0 bits (79), Expect = 0.47, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
+ +LF G PG GKT + R +A S E +K S + D +G A R
Sbjct: 301 RGVLFHGPPGTGKTLMARALAAACSSENKK------VSFYMRKGADCLSKWVGEAER--- 351
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
Q +++ E ++ P +I DEI
Sbjct: 352 -----QLRLLFEEAKSTQPSIIFFDEI 373
>sp|F4IAE9|Y1591_ARATH ATPase family AAA domain-containing protein At1g05910
OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1
Length = 1210
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
+ +L G PG GKT + R +A S QK S + D+ +G A R
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQK------VSFYMRKGADVLSKWVGEAER--- 466
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI 209
Q K++ E + + P +I DEI
Sbjct: 467 -----QLKLLFEEAQRNQPSIIFFDEI 488
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 35.0 bits (79), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 29/111 (26%)
Query: 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182
K +L G PG GKT + R IA L F K V IG + G AR
Sbjct: 172 KGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR---- 227
Query: 183 PEPSLQHKVMIEAVENHMPEVIIVDEI----------GTEAEAHACRSIAE 223
+H P VI +DEI GT A+ R++ E
Sbjct: 228 ---------------DHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLME 263
>sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1
Length = 964
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
GK I G PGVGKT++ R IAR L+ +F +
Sbjct: 448 GKIICLSGPPGVGKTSIGRSIARALNRQFYR 478
>sp|A9B5N1|LON1_HERA2 Lon protease 1 OS=Herpetosiphon aurantiacus (strain ATCC 23779 /
DSM 785) GN=lon1 PE=3 SV=1
Length = 815
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNEIGGD-----GDIPHSAIG 175
G + FVG PGVGKT++ R IA+ ++ EF + + V EI G G +P S I
Sbjct: 363 GAILCFVGPPGVGKTSLGRSIAKAMNREFVRLSLGGVHDEAEIRGHRRTYIGAMPGSLIQ 422
Query: 176 TARRMQVPEP 185
RR V P
Sbjct: 423 AIRRSGVNNP 432
>sp|B1LAB2|NTPTH_THESQ Nucleoside-triphosphatase THEP1 OS=Thermotoga sp. (strain RQ2)
GN=TRQ2_0909 PE=3 SV=1
Length = 174
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 124 SILFVGRPGVGKTTVMREIARVLSD 148
IL GRPGVGKTT++++++R+L +
Sbjct: 2 KILITGRPGVGKTTLIKKLSRLLQN 26
>sp|Q755E4|LONP2_ASHGO Lon protease homolog 2, peroxisomal OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AFL121W
PE=3 SV=2
Length = 1004
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQK 152
+L VG PGVGKT+V + +A VL FQ+
Sbjct: 515 LLLVGPPGVGKTSVAKSVADVLGRRFQR 542
>sp|Q6CWS4|LONP2_KLULA Lon protease homolog 2, peroxisomal OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=KLLA0B01892g PE=3 SV=1
Length = 1003
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQK 152
+L VG PGVGKT++ + +A VL +FQ+
Sbjct: 516 LLLVGPPGVGKTSIAKSVADVLGRKFQR 543
>sp|Q4A6N6|RUVB_MYCS5 Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
synoviae (strain 53) GN=ruvB PE=3 SV=2
Length = 316
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGTARRMQVP 183
ILF G PG+GKT+ +A ++++E + ++ + SN E D S I + +
Sbjct: 39 ILFYGMPGMGKTS----LAGIIANETKNKIHFIQGSNLEKKSDLINILSVINENDIVFID 94
Query: 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR 219
E +K +IE + + M + + IGTE+ A A R
Sbjct: 95 EIHSINKNIIEFLYSAMEDFVFDLIIGTESNAKALR 130
>sp|Q72JM6|LON2_THET2 Lon protease 2 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=lon2 PE=3 SV=1
Length = 804
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 102 CRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150
+ RA G I D ++ G +LFVG PGVGKT++ + IA L ++
Sbjct: 337 LKAERAKRGEIPP--DEVNKGPILLFVGPPGVGKTSIAKSIAEALGRKY 383
>sp|Q8T6B4|ABCF4_DICDI ABC transporter F family member 4 OS=Dictyostelium discoideum
GN=abcF4 PE=3 SV=1
Length = 1142
Score = 34.7 bits (78), Expect = 0.69, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRVVIVDTSNEIGGDGDIP 170
L YG+ FVGR G+GK+T++++IA + DE RV+ V+ E+ GD P
Sbjct: 626 LAYGQKYGFVGRNGIGKSTLVKKIA--MRDEITIAPHLRVLYVE--QEVTGDDTTP 677
>sp|Q69UZ3|LONM_ORYSJ Lon protease homolog, mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0689300 PE=2 SV=1
Length = 1002
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
GK I G PGVGKT++ R IAR L+ +F +
Sbjct: 461 GKIICLSGPPGVGKTSIGRSIARALNRKFYR 491
>sp|A2YQ56|LONM_ORYSI Lon protease homolog, mitochondrial OS=Oryza sativa subsp. indica
GN=OsI_27415 PE=2 SV=1
Length = 1002
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQK 152
GK I G PGVGKT++ R IAR L+ +F +
Sbjct: 461 GKIICLSGPPGVGKTSIGRSIARALNRKFYR 491
>sp|Q754Q9|LONM_ASHGO Lon protease homolog, mitochondrial OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PIM1
PE=3 SV=2
Length = 1058
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVDTSNEIGGD-----GDIPHSAI 174
GK I VG PGVGKT++ + I+R L+ F + V + D S EI G G +P I
Sbjct: 557 GKIICLVGPPGVGKTSIGQSISRALNRTFFRFSVGGMSDVS-EIKGHRRTYIGALPGRLI 615
Query: 175 GTARRMQVPEP 185
+R Q P
Sbjct: 616 HALKRCQTENP 626
>sp|O51558|LON2_BORBU Lon protease 2 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=lon2 PE=3 SV=2
Length = 796
Score = 34.7 bits (78), Expect = 0.72, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 125 ILFVGRPGVGKTTVMREIARVLSDEFQK 152
+ VG PG+GKT+++ IAR LS EF K
Sbjct: 348 LCLVGPPGIGKTSLVESIARSLSREFVK 375
>sp|P93655|LONM1_ARATH Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana
GN=LON1 PE=1 SV=2
Length = 940
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEF 150
GK I G PGVGKT++ R IAR L+ +F
Sbjct: 457 GKIICLSGPPGVGKTSIGRSIARALNRKF 485
>sp|Q6C0B5|LONM_YARLI Lon protease homolog, mitochondrial OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=PIM1 PE=3 SV=1
Length = 1177
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSNEIGGD-----GDIPHSAIG 175
GK +L G PGVGKT++ + IA+ L+ +F + V + ++E+ G G IP +
Sbjct: 650 GKILLLQGPPGVGKTSIGKSIAKALNRQFYRFSVGGTNDASEVKGHRRTYVGAIPGRLVQ 709
Query: 176 TARRMQVPEP 185
++ Q P
Sbjct: 710 ALKQTQTENP 719
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,363,848
Number of Sequences: 539616
Number of extensions: 4079519
Number of successful extensions: 22104
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 21795
Number of HSP's gapped (non-prelim): 516
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)