Query 025371
Match_columns 254
No_of_seqs 305 out of 2886
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:08:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3854 SpoIIIAA ncharacterize 100.0 1.1E-33 2.4E-38 233.5 21.6 247 2-251 1-269 (308)
2 COG2805 PilT Tfp pilus assembl 100.0 2E-30 4.2E-35 221.7 16.0 212 25-245 14-243 (353)
3 COG1126 GlnQ ABC-type polar am 100.0 2.6E-29 5.6E-34 206.3 13.5 148 97-247 5-208 (240)
4 PRK13833 conjugal transfer pro 100.0 3.6E-28 7.8E-33 214.9 20.5 230 4-247 7-262 (323)
5 COG1120 FepC ABC-type cobalami 100.0 9.8E-29 2.1E-33 210.8 14.9 149 97-247 5-211 (258)
6 PRK13900 type IV secretion sys 100.0 7.3E-28 1.6E-32 214.6 21.2 228 16-251 12-286 (332)
7 PRK13851 type IV secretion sys 100.0 1.4E-27 3E-32 213.2 19.6 220 17-247 12-283 (344)
8 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.9E-28 8.4E-33 206.2 14.2 149 97-247 7-211 (254)
9 PRK13894 conjugal transfer ATP 100.0 4.6E-27 9.9E-32 208.3 21.5 229 6-248 13-267 (319)
10 TIGR02782 TrbB_P P-type conjug 100.0 2.8E-27 6.2E-32 208.3 19.8 221 14-247 5-251 (299)
11 TIGR02525 plasmid_TraJ plasmid 100.0 7.6E-27 1.7E-31 210.3 21.4 227 12-245 9-270 (372)
12 TIGR02858 spore_III_AA stage I 100.0 1.2E-26 2.6E-31 201.0 19.4 217 29-251 1-245 (270)
13 COG4962 CpaF Flp pilus assembl 99.9 3.2E-27 6.9E-32 206.3 14.8 219 18-247 49-295 (355)
14 TIGR03819 heli_sec_ATPase heli 99.9 2E-26 4.3E-31 206.0 19.9 222 18-250 54-303 (340)
15 COG1116 TauB ABC-type nitrate/ 99.9 5.4E-27 1.2E-31 197.2 14.8 148 97-247 6-203 (248)
16 TIGR02788 VirB11 P-type DNA tr 99.9 3.2E-26 6.9E-31 202.8 20.4 216 22-247 1-265 (308)
17 TIGR02524 dot_icm_DotB Dot/Icm 99.9 5.9E-25 1.3E-29 197.7 20.7 227 13-246 4-258 (358)
18 PF00437 T2SE: Type II/IV secr 99.9 2.4E-25 5.2E-30 193.7 14.5 217 18-245 3-242 (270)
19 COG1136 SalX ABC-type antimicr 99.9 1.2E-25 2.7E-30 188.3 11.5 147 98-245 5-213 (226)
20 TIGR01420 pilT_fam pilus retra 99.9 2.3E-24 4.9E-29 193.6 19.5 212 25-245 11-240 (343)
21 COG1125 OpuBA ABC-type proline 99.9 1.1E-25 2.5E-30 188.7 10.3 146 97-245 4-206 (309)
22 COG3842 PotA ABC-type spermidi 99.9 1.7E-25 3.8E-30 198.7 11.9 147 97-246 8-208 (352)
23 COG1124 DppF ABC-type dipeptid 99.9 3.7E-25 8E-30 184.9 13.0 150 97-247 6-214 (252)
24 COG3839 MalK ABC-type sugar tr 99.9 2.4E-25 5.2E-30 196.8 12.5 147 97-246 6-205 (338)
25 COG4555 NatA ABC-type Na+ tran 99.9 1.1E-25 2.4E-30 182.9 9.4 147 97-246 4-204 (245)
26 cd03216 ABC_Carb_Monos_I This 99.9 4E-25 8.6E-30 178.6 12.7 143 97-247 3-154 (163)
27 COG0630 VirB11 Type IV secreto 99.9 2.8E-24 6E-29 190.2 17.8 219 18-246 17-262 (312)
28 COG2884 FtsE Predicted ATPase 99.9 4.2E-25 9.2E-30 178.0 10.5 148 98-247 5-209 (223)
29 COG1127 Ttg2A ABC-type transpo 99.9 3.6E-25 7.9E-30 184.5 10.1 148 97-246 11-217 (263)
30 cd03230 ABC_DR_subfamily_A Thi 99.9 1.6E-24 3.5E-29 176.6 13.5 145 97-247 3-167 (173)
31 TIGR00960 3a0501s02 Type II (G 99.9 1.6E-24 3.4E-29 182.5 12.5 150 97-247 4-210 (216)
32 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.9E-24 6.2E-29 170.2 12.9 132 97-246 3-138 (144)
33 PRK13537 nodulation ABC transp 99.9 2.9E-24 6.3E-29 190.2 13.9 148 97-246 10-209 (306)
34 cd03246 ABCC_Protease_Secretio 99.9 3.8E-24 8.2E-29 174.4 13.3 145 97-246 3-166 (173)
35 cd03229 ABC_Class3 This class 99.9 4.6E-24 1E-28 174.7 13.8 147 97-246 3-172 (178)
36 COG1122 CbiO ABC-type cobalt t 99.9 1.1E-24 2.4E-29 185.0 10.5 148 97-247 6-211 (235)
37 cd03225 ABC_cobalt_CbiO_domain 99.9 2.4E-24 5.3E-29 180.7 12.1 150 97-247 2-206 (211)
38 cd03226 ABC_cobalt_CbiO_domain 99.9 2.2E-24 4.7E-29 180.3 11.7 149 98-247 3-198 (205)
39 cd03222 ABC_RNaseL_inhibitor T 99.9 5.8E-24 1.3E-28 173.8 13.7 131 99-246 5-143 (177)
40 cd03259 ABC_Carb_Solutes_like 99.9 3.2E-24 6.8E-29 180.3 12.4 149 97-247 3-203 (213)
41 COG1131 CcmA ABC-type multidru 99.9 2.9E-24 6.3E-29 188.9 12.2 147 97-246 7-208 (293)
42 COG3638 ABC-type phosphate/pho 99.9 2.3E-24 4.9E-29 179.2 10.5 149 97-247 6-220 (258)
43 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.4E-24 7.4E-29 180.7 11.8 148 97-246 3-211 (218)
44 cd03265 ABC_DrrA DrrA is the A 99.9 4.7E-24 1E-28 180.2 12.6 147 97-246 3-203 (220)
45 cd03223 ABCD_peroxisomal_ALDP 99.9 7.7E-24 1.7E-28 171.6 13.2 147 97-247 3-159 (166)
46 PRK13536 nodulation factor exp 99.9 4.6E-24 9.9E-29 191.3 12.9 149 97-247 44-244 (340)
47 COG5008 PilU Tfp pilus assembl 99.9 1.5E-23 3.3E-28 176.7 15.1 211 25-244 16-244 (375)
48 cd03261 ABC_Org_Solvent_Resist 99.9 6E-24 1.3E-28 181.3 12.5 148 97-247 3-209 (235)
49 TIGR02673 FtsE cell division A 99.9 6.1E-24 1.3E-28 178.6 12.2 148 97-246 4-208 (214)
50 TIGR01288 nodI ATP-binding ABC 99.9 5.4E-24 1.2E-28 188.3 12.4 149 97-247 7-207 (303)
51 cd03293 ABC_NrtD_SsuB_transpor 99.9 7.8E-24 1.7E-28 178.8 12.8 150 97-246 3-203 (220)
52 PRK11432 fbpC ferric transport 99.9 1E-23 2.2E-28 189.7 13.6 147 97-246 9-208 (351)
53 PRK13764 ATPase; Provisional 99.9 8.4E-23 1.8E-27 192.9 20.3 212 25-247 141-371 (602)
54 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-23 2.4E-28 189.9 13.7 142 97-246 6-206 (356)
55 TIGR03258 PhnT 2-aminoethylpho 99.9 1.1E-23 2.3E-28 190.2 13.5 148 97-247 8-211 (362)
56 cd03215 ABC_Carb_Monos_II This 99.9 9.1E-24 2E-28 173.5 12.0 144 97-247 7-176 (182)
57 cd03262 ABC_HisP_GlnQ_permease 99.9 1.2E-23 2.6E-28 176.6 13.0 148 97-247 3-207 (213)
58 cd03235 ABC_Metallic_Cations A 99.9 1.4E-23 3.1E-28 176.3 13.4 149 97-247 2-204 (213)
59 cd03268 ABC_BcrA_bacitracin_re 99.9 1.7E-23 3.7E-28 175.2 13.6 148 97-247 3-198 (208)
60 COG1118 CysA ABC-type sulfate/ 99.9 4.3E-24 9.3E-29 183.5 10.1 146 99-247 7-210 (345)
61 cd03266 ABC_NatA_sodium_export 99.9 1.1E-23 2.3E-28 177.7 12.4 150 97-247 4-208 (218)
62 TIGR03265 PhnT2 putative 2-ami 99.9 1.2E-23 2.7E-28 189.4 13.4 147 97-246 7-206 (353)
63 cd03292 ABC_FtsE_transporter F 99.9 1E-23 2.2E-28 177.2 11.8 149 97-247 3-208 (214)
64 cd03218 ABC_YhbG The ABC trans 99.9 1.6E-23 3.5E-28 178.2 13.2 147 97-246 3-204 (232)
65 cd03301 ABC_MalK_N The N-termi 99.9 1.7E-23 3.6E-28 175.9 13.0 148 97-246 3-202 (213)
66 cd03214 ABC_Iron-Siderophores_ 99.9 1.2E-23 2.6E-28 172.6 11.7 148 97-247 2-170 (180)
67 PRK09536 btuD corrinoid ABC tr 99.9 1.4E-23 3E-28 191.5 13.3 149 97-247 6-211 (402)
68 cd03228 ABCC_MRP_Like The MRP 99.9 1.1E-23 2.4E-28 171.3 11.2 147 97-246 3-165 (171)
69 cd03247 ABCC_cytochrome_bd The 99.9 2.3E-23 5E-28 170.5 12.8 143 97-246 3-167 (178)
70 cd03269 ABC_putative_ATPase Th 99.9 1.9E-23 4.2E-28 175.2 12.6 148 97-246 3-199 (210)
71 PRK11247 ssuB aliphatic sulfon 99.9 2.1E-23 4.6E-28 180.3 13.2 149 97-247 15-206 (257)
72 PRK11000 maltose/maltodextrin 99.9 2.5E-23 5.4E-28 188.6 14.2 148 97-246 6-205 (369)
73 PRK13638 cbiO cobalt transport 99.9 1.7E-23 3.6E-28 182.3 12.2 147 97-246 4-207 (271)
74 cd03296 ABC_CysA_sulfate_impor 99.9 2.9E-23 6.2E-28 177.6 13.4 148 97-246 5-208 (239)
75 cd03213 ABCG_EPDR ABCG transpo 99.9 2.1E-23 4.5E-28 173.2 12.0 149 97-246 6-183 (194)
76 COG4152 ABC-type uncharacteriz 99.9 1.1E-23 2.3E-28 175.9 10.0 147 97-246 5-201 (300)
77 PRK13651 cobalt transporter AT 99.9 2.1E-23 4.7E-28 184.5 12.6 149 97-246 5-236 (305)
78 PRK09452 potA putrescine/sperm 99.9 3E-23 6.4E-28 188.1 13.7 142 97-246 17-216 (375)
79 cd03258 ABC_MetN_methionine_tr 99.9 2.3E-23 4.9E-28 177.4 11.9 149 97-246 4-212 (233)
80 PRK11248 tauB taurine transpor 99.9 4.2E-23 9.2E-28 178.3 13.7 148 97-247 4-201 (255)
81 PRK09544 znuC high-affinity zi 99.9 3.9E-23 8.4E-28 178.2 13.3 148 97-246 7-192 (251)
82 COG1117 PstB ABC-type phosphat 99.9 3.5E-23 7.7E-28 169.8 12.3 153 97-251 10-224 (253)
83 PRK10908 cell division protein 99.9 3.9E-23 8.5E-28 174.8 13.1 147 97-246 4-208 (222)
84 COG1135 AbcC ABC-type metal io 99.9 1.8E-23 3.9E-28 180.0 11.0 147 97-246 4-213 (339)
85 cd03224 ABC_TM1139_LivF_branch 99.9 2.8E-23 6.1E-28 175.5 12.1 148 97-247 3-204 (222)
86 TIGR02314 ABC_MetN D-methionin 99.9 2.7E-23 5.8E-28 186.3 12.6 149 97-246 4-212 (343)
87 TIGR03740 galliderm_ABC gallid 99.9 3E-23 6.5E-28 175.6 12.2 147 97-246 3-195 (223)
88 cd03257 ABC_NikE_OppD_transpor 99.9 4E-23 8.6E-28 175.1 12.9 151 97-247 4-218 (228)
89 TIGR03608 L_ocin_972_ABC putat 99.9 3.9E-23 8.4E-28 172.7 12.6 144 98-245 2-203 (206)
90 PRK11153 metN DL-methionine tr 99.9 2.3E-23 5.1E-28 187.1 12.0 150 97-247 4-213 (343)
91 PRK10851 sulfate/thiosulfate t 99.9 4.7E-23 1E-27 185.6 13.9 143 97-247 5-209 (353)
92 cd03219 ABC_Mj1267_LivG_branch 99.9 3.5E-23 7.7E-28 176.5 12.4 149 97-247 3-215 (236)
93 TIGR02211 LolD_lipo_ex lipopro 99.9 4.1E-23 8.8E-28 174.5 12.2 148 97-245 4-211 (221)
94 cd03231 ABC_CcmA_heme_exporter 99.9 6E-23 1.3E-27 171.3 13.1 148 97-247 3-197 (201)
95 PRK11629 lolD lipoprotein tran 99.9 4E-23 8.7E-28 176.0 12.3 146 97-242 8-213 (233)
96 COG4559 ABC-type hemin transpo 99.9 7.4E-23 1.6E-27 167.7 13.2 148 97-247 4-213 (259)
97 PRK13538 cytochrome c biogenes 99.9 4.9E-23 1.1E-27 172.1 12.6 148 97-247 4-201 (204)
98 PRK10895 lipopolysaccharide AB 99.9 3.9E-23 8.4E-28 176.9 12.2 147 97-246 6-208 (241)
99 TIGR01188 drrA daunorubicin re 99.9 3.4E-23 7.3E-28 183.1 12.0 135 111-246 8-195 (302)
100 TIGR03410 urea_trans_UrtE urea 99.9 8.2E-23 1.8E-27 173.7 14.0 148 97-247 3-204 (230)
101 cd03217 ABC_FeS_Assembly ABC-t 99.9 7.1E-23 1.5E-27 170.7 13.3 144 97-246 3-176 (200)
102 PRK11264 putative amino-acid A 99.9 5.3E-23 1.2E-27 176.9 12.7 147 97-246 6-215 (250)
103 PRK13643 cbiO cobalt transport 99.9 5.1E-23 1.1E-27 180.8 12.9 150 97-246 4-215 (288)
104 TIGR03522 GldA_ABC_ATP gliding 99.9 5.1E-23 1.1E-27 181.9 12.9 146 97-246 5-203 (301)
105 cd03256 ABC_PhnC_transporter A 99.9 5.3E-23 1.2E-27 175.9 12.5 148 97-247 3-217 (241)
106 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.1E-23 6.6E-28 175.9 10.8 147 97-246 25-213 (224)
107 PRK13647 cbiO cobalt transport 99.9 4.8E-23 1E-27 179.8 12.3 149 97-246 7-209 (274)
108 PRK11607 potG putrescine trans 99.9 6.2E-23 1.4E-27 186.2 13.5 142 97-246 22-221 (377)
109 PRK13641 cbiO cobalt transport 99.9 5.7E-23 1.2E-27 180.4 12.4 151 97-247 5-217 (287)
110 PRK10619 histidine/lysine/argi 99.9 7.7E-23 1.7E-27 176.8 13.0 147 97-246 8-223 (257)
111 PRK13543 cytochrome c biogenes 99.9 8.5E-23 1.9E-27 171.9 13.0 148 97-246 14-208 (214)
112 PRK13634 cbiO cobalt transport 99.9 5.9E-23 1.3E-27 180.6 12.4 151 97-247 5-218 (290)
113 PRK10584 putative ABC transpor 99.9 6.5E-23 1.4E-27 174.1 12.0 148 97-245 9-216 (228)
114 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1E-22 2.2E-27 173.9 13.2 146 97-246 4-203 (236)
115 PRK14250 phosphate ABC transpo 99.9 8.9E-23 1.9E-27 174.8 12.9 147 97-246 6-203 (241)
116 PRK11124 artP arginine transpo 99.9 7.3E-23 1.6E-27 175.3 12.4 147 97-246 5-212 (242)
117 PRK13637 cbiO cobalt transport 99.9 6.4E-23 1.4E-27 180.1 12.3 150 97-246 5-216 (287)
118 cd03263 ABC_subfamily_A The AB 99.9 1.1E-22 2.3E-27 171.7 13.1 149 97-247 3-204 (220)
119 PRK13548 hmuV hemin importer A 99.9 1.2E-22 2.6E-27 175.7 13.6 147 97-246 5-212 (258)
120 TIGR02315 ABC_phnC phosphonate 99.9 8E-23 1.7E-27 175.0 12.1 147 97-246 4-217 (243)
121 PRK13540 cytochrome c biogenes 99.9 1E-22 2.2E-27 169.7 12.4 146 97-245 4-197 (200)
122 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.6E-22 3.4E-27 169.7 13.5 147 97-247 3-201 (211)
123 PRK09493 glnQ glutamine ABC tr 99.9 1.5E-22 3.2E-27 173.2 13.4 148 97-247 4-208 (240)
124 cd03294 ABC_Pro_Gly_Bertaine T 99.9 4.4E-23 9.5E-28 179.5 10.0 145 99-246 29-232 (269)
125 PRK13646 cbiO cobalt transport 99.9 9.9E-23 2.1E-27 178.8 12.3 150 97-247 5-218 (286)
126 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.2E-22 2.5E-27 174.1 12.4 148 97-246 3-207 (242)
127 cd03264 ABC_drug_resistance_li 99.9 2E-22 4.4E-27 169.1 13.6 145 97-246 3-200 (211)
128 cd03232 ABC_PDR_domain2 The pl 99.9 1.3E-22 2.7E-27 168.2 12.1 149 97-246 6-180 (192)
129 PRK11831 putative ABC transpor 99.9 1.4E-22 3E-27 176.4 12.8 148 97-246 10-215 (269)
130 PRK11231 fecE iron-dicitrate t 99.9 1.7E-22 3.7E-27 174.4 13.2 148 97-246 5-209 (255)
131 PRK11614 livF leucine/isoleuci 99.9 1.2E-22 2.5E-27 173.5 12.1 147 97-246 8-208 (237)
132 TIGR03873 F420-0_ABC_ATP propo 99.9 1.6E-22 3.5E-27 174.7 13.0 149 97-247 4-209 (256)
133 PRK13652 cbiO cobalt transport 99.9 1.4E-22 3E-27 177.1 12.7 149 97-247 6-210 (277)
134 PRK13644 cbiO cobalt transport 99.9 1.1E-22 2.4E-27 177.4 11.8 147 97-246 4-206 (274)
135 cd03250 ABCC_MRP_domain1 Domai 99.9 1.3E-22 2.8E-27 169.5 11.7 148 97-245 3-197 (204)
136 PRK13649 cbiO cobalt transport 99.9 1.3E-22 2.9E-27 177.4 12.2 151 97-247 5-217 (280)
137 cd03260 ABC_PstB_phosphate_tra 99.9 1.3E-22 2.9E-27 172.0 11.8 148 97-247 3-212 (227)
138 PRK10575 iron-hydroxamate tran 99.9 1.9E-22 4.2E-27 175.1 12.9 148 97-246 14-219 (265)
139 PRK10253 iron-enterobactin tra 99.9 2E-22 4.4E-27 174.9 13.0 148 97-247 10-216 (265)
140 cd03252 ABCC_Hemolysin The ABC 99.9 1.7E-22 3.6E-27 172.5 12.3 148 97-246 3-207 (237)
141 TIGR01189 ccmA heme ABC export 99.9 2.9E-22 6.3E-27 166.7 13.4 136 97-235 3-187 (198)
142 TIGR03005 ectoine_ehuA ectoine 99.9 1.7E-22 3.6E-27 174.2 12.3 147 97-246 3-218 (252)
143 PRK11144 modC molybdate transp 99.9 2.2E-22 4.7E-27 181.4 13.6 143 99-246 5-200 (352)
144 COG4181 Predicted ABC-type tra 99.9 8.2E-23 1.8E-27 162.4 9.3 136 109-245 23-217 (228)
145 TIGR02324 CP_lyasePhnL phospho 99.9 4.3E-22 9.2E-27 168.6 14.4 149 97-246 4-220 (224)
146 PRK13636 cbiO cobalt transport 99.9 1.8E-22 3.9E-27 176.9 12.5 150 97-247 8-214 (283)
147 PRK11300 livG leucine/isoleuci 99.9 2.7E-22 5.9E-27 173.0 13.3 148 97-246 8-225 (255)
148 PRK13631 cbiO cobalt transport 99.9 1.9E-22 4E-27 179.6 12.7 149 97-246 24-247 (320)
149 PRK11308 dppF dipeptide transp 99.9 1.8E-22 3.8E-27 180.2 12.5 150 97-247 8-227 (327)
150 PRK13635 cbiO cobalt transport 99.9 1.4E-22 3.1E-27 177.2 11.7 148 97-246 8-211 (279)
151 cd00267 ABC_ATPase ABC (ATP-bi 99.9 4.6E-22 1E-26 159.5 13.8 143 97-247 2-152 (157)
152 PRK15056 manganese/iron transp 99.9 4.7E-22 1E-26 173.3 14.9 149 97-246 9-213 (272)
153 cd03297 ABC_ModC_molybdenum_tr 99.9 2.1E-22 4.6E-27 169.4 12.2 143 99-247 5-204 (214)
154 TIGR02323 CP_lyasePhnK phospho 99.9 4E-22 8.7E-27 171.8 14.1 147 97-246 6-220 (253)
155 PRK10771 thiQ thiamine transpo 99.9 3.1E-22 6.8E-27 170.4 13.2 147 97-247 4-202 (232)
156 PRK13650 cbiO cobalt transport 99.9 1.9E-22 4.2E-27 176.4 12.2 147 97-245 7-210 (279)
157 PRK15112 antimicrobial peptide 99.9 2.3E-22 4.9E-27 174.9 12.5 151 97-247 7-222 (267)
158 TIGR02142 modC_ABC molybdenum 99.9 3E-22 6.5E-27 180.7 13.6 143 99-246 4-203 (354)
159 PRK15439 autoinducer 2 ABC tra 99.9 2.4E-22 5.1E-27 189.5 13.5 147 97-246 14-211 (510)
160 COG4525 TauB ABC-type taurine 99.9 3.2E-22 7E-27 162.1 12.3 144 98-243 7-201 (259)
161 TIGR01277 thiQ thiamine ABC tr 99.9 3.2E-22 6.8E-27 168.3 12.7 146 97-246 3-200 (213)
162 cd03300 ABC_PotA_N PotA is an 99.9 3E-22 6.4E-27 170.6 12.5 147 97-246 3-202 (232)
163 PRK11701 phnK phosphonate C-P 99.9 4.2E-22 9E-27 172.3 13.6 147 97-246 9-223 (258)
164 PRK11022 dppD dipeptide transp 99.9 2.2E-22 4.7E-27 179.7 12.1 148 97-247 6-226 (326)
165 PRK13645 cbiO cobalt transport 99.9 2.2E-22 4.9E-27 176.8 12.0 149 97-246 9-222 (289)
166 TIGR01186 proV glycine betaine 99.9 1.7E-22 3.6E-27 182.3 11.4 135 111-246 8-201 (363)
167 PRK13639 cbiO cobalt transport 99.9 2.7E-22 5.9E-27 175.1 12.2 149 97-247 4-209 (275)
168 PRK15079 oligopeptide ABC tran 99.9 2.4E-22 5.1E-27 179.7 12.1 136 111-247 36-234 (331)
169 COG0411 LivG ABC-type branched 99.9 6.8E-23 1.5E-27 171.4 8.0 148 97-247 7-222 (250)
170 TIGR03411 urea_trans_UrtD urea 99.9 2.9E-22 6.3E-27 171.5 12.2 147 97-247 5-214 (242)
171 PRK13539 cytochrome c biogenes 99.9 5.3E-22 1.1E-26 166.3 13.5 141 97-240 5-192 (207)
172 TIGR02769 nickel_nikE nickel i 99.9 3.5E-22 7.5E-27 173.5 12.5 150 97-246 5-222 (265)
173 cd03369 ABCC_NFT1 Domain 2 of 99.9 6.3E-22 1.4E-26 165.7 13.2 148 97-246 9-194 (207)
174 PRK10247 putative ABC transpor 99.9 3.9E-22 8.5E-27 169.2 12.0 146 97-246 10-208 (225)
175 COG3840 ThiQ ABC-type thiamine 99.9 5.9E-22 1.3E-26 158.9 12.1 145 98-247 5-202 (231)
176 PRK13648 cbiO cobalt transport 99.9 3E-22 6.5E-27 174.2 11.4 147 97-245 10-212 (269)
177 COG1123 ATPase components of v 99.9 3.8E-22 8.2E-27 184.8 12.6 150 97-247 283-502 (539)
178 TIGR00972 3a0107s01c2 phosphat 99.9 6.3E-22 1.4E-26 170.1 13.2 146 97-246 4-214 (247)
179 PRK09473 oppD oligopeptide tra 99.9 3.2E-22 7E-27 178.8 11.7 151 97-247 15-234 (330)
180 TIGR01166 cbiO cobalt transpor 99.9 2.5E-22 5.5E-27 165.9 10.2 125 111-236 7-188 (190)
181 PRK09700 D-allose transporter 99.9 3.6E-22 7.7E-27 188.4 12.6 149 97-247 8-217 (510)
182 PRK09984 phosphonate/organopho 99.9 5.2E-22 1.1E-26 172.1 12.6 149 97-247 7-225 (262)
183 TIGR01978 sufC FeS assembly AT 99.9 1.1E-21 2.5E-26 167.8 14.6 148 97-246 3-216 (243)
184 TIGR00968 3a0106s01 sulfate AB 99.9 8.1E-22 1.8E-26 168.5 13.4 147 97-246 3-202 (237)
185 PRK13640 cbiO cobalt transport 99.9 4.1E-22 8.9E-27 174.6 11.8 149 97-246 8-214 (282)
186 PRK10938 putative molybdenum t 99.9 7.4E-22 1.6E-26 185.3 14.3 147 97-246 6-206 (490)
187 cd03251 ABCC_MsbA MsbA is an e 99.9 5.9E-22 1.3E-26 168.8 12.4 147 97-246 3-207 (234)
188 cd03233 ABC_PDR_domain1 The pl 99.9 5.1E-22 1.1E-26 165.8 11.7 149 97-246 6-191 (202)
189 cd03245 ABCC_bacteriocin_expor 99.9 6.5E-22 1.4E-26 167.0 12.5 148 97-246 5-209 (220)
190 cd03234 ABCG_White The White s 99.9 7.7E-22 1.7E-26 167.4 13.0 150 97-246 6-215 (226)
191 cd03254 ABCC_Glucan_exporter_l 99.9 5.1E-22 1.1E-26 168.6 11.9 146 97-245 5-207 (229)
192 PRK10436 hypothetical protein; 99.9 1.2E-20 2.6E-25 174.6 21.7 205 25-245 97-332 (462)
193 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.8E-22 1.1E-26 169.8 11.6 148 97-247 3-209 (238)
194 PRK10762 D-ribose transporter 99.9 5.9E-22 1.3E-26 186.5 13.0 149 97-247 7-213 (501)
195 PRK13541 cytochrome c biogenes 99.9 1.2E-21 2.6E-26 162.6 13.3 140 97-240 4-188 (195)
196 cd03238 ABC_UvrA The excision 99.9 5.7E-22 1.2E-26 161.9 10.7 128 110-245 9-158 (176)
197 PRK15064 ABC transporter ATP-b 99.9 9.3E-22 2E-26 186.3 13.7 148 97-246 4-223 (530)
198 PRK10070 glycine betaine trans 99.9 5.5E-22 1.2E-26 180.9 11.5 134 112-246 44-236 (400)
199 COG0410 LivF ABC-type branched 99.9 1.3E-21 2.9E-26 162.5 12.8 147 97-246 6-208 (237)
200 PRK13549 xylose transporter AT 99.9 8.1E-22 1.8E-26 185.8 13.0 148 97-247 8-215 (506)
201 PRK14273 phosphate ABC transpo 99.9 1.2E-21 2.7E-26 168.9 13.1 147 97-246 10-220 (254)
202 cd03253 ABCC_ATM1_transporter 99.9 9.1E-22 2E-26 167.8 12.0 145 97-245 3-205 (236)
203 PRK13632 cbiO cobalt transport 99.9 8.3E-22 1.8E-26 171.7 11.9 148 97-245 10-212 (271)
204 PRK14247 phosphate ABC transpo 99.9 1.1E-21 2.4E-26 168.7 12.6 147 97-246 6-216 (250)
205 PRK14242 phosphate transporter 99.9 1.1E-21 2.4E-26 169.0 12.6 146 97-246 9-219 (253)
206 TIGR01184 ntrCD nitrate transp 99.9 8.1E-22 1.8E-26 167.8 11.4 133 113-246 2-186 (230)
207 PRK10418 nikD nickel transport 99.9 1.6E-21 3.5E-26 168.3 13.4 147 97-246 7-212 (254)
208 cd03299 ABC_ModC_like Archeal 99.9 1.1E-21 2.4E-26 167.4 12.2 148 97-247 3-202 (235)
209 COG0444 DppD ABC-type dipeptid 99.9 6.6E-22 1.4E-26 171.9 10.9 151 97-247 4-226 (316)
210 COG2274 SunT ABC-type bacterio 99.9 4.6E-22 1E-26 192.0 10.9 150 97-246 474-679 (709)
211 cd03237 ABC_RNaseL_inhibitor_d 99.9 1E-21 2.2E-26 168.8 11.9 131 116-246 19-187 (246)
212 PRK10982 galactose/methyl gala 99.9 9E-22 2E-26 184.8 12.4 147 98-246 2-205 (491)
213 cd03248 ABCC_TAP TAP, the Tran 99.9 1.3E-21 2.8E-26 165.9 12.0 148 97-246 14-219 (226)
214 cd03290 ABCC_SUR1_N The SUR do 99.9 2.1E-21 4.5E-26 163.8 13.1 147 97-246 3-212 (218)
215 TIGR03269 met_CoM_red_A2 methy 99.9 1.5E-21 3.3E-26 184.5 13.7 148 97-247 3-241 (520)
216 PRK09580 sufC cysteine desulfu 99.9 2.6E-21 5.6E-26 166.2 13.8 147 97-246 4-217 (248)
217 TIGR02533 type_II_gspE general 99.9 3.4E-20 7.4E-25 173.0 22.3 205 25-245 121-356 (486)
218 cd03244 ABCC_MRP_domain2 Domai 99.9 2.3E-21 5.1E-26 163.7 13.2 146 97-245 5-207 (221)
219 PRK10419 nikE nickel transport 99.9 1.9E-21 4.2E-26 169.1 13.0 150 97-247 6-224 (268)
220 PRK13633 cobalt transporter AT 99.9 1.3E-21 2.9E-26 171.2 11.9 148 97-246 7-215 (280)
221 PRK14248 phosphate ABC transpo 99.9 1.6E-21 3.5E-26 169.5 12.3 147 97-246 24-234 (268)
222 PRK10744 pstB phosphate transp 99.9 1.9E-21 4.1E-26 168.4 12.6 147 97-246 16-226 (260)
223 PRK11288 araG L-arabinose tran 99.9 1.5E-21 3.3E-26 183.7 13.0 149 97-247 7-212 (501)
224 TIGR03415 ABC_choXWV_ATP choli 99.9 1.2E-21 2.5E-26 177.7 11.7 135 112-247 40-237 (382)
225 PRK15093 antimicrobial peptide 99.9 1.9E-21 4.2E-26 173.9 13.0 151 97-247 6-231 (330)
226 PRK14268 phosphate ABC transpo 99.9 1.2E-21 2.6E-26 169.4 11.3 146 97-246 15-224 (258)
227 PRK13642 cbiO cobalt transport 99.9 1.7E-21 3.6E-26 170.3 12.2 149 97-246 7-211 (277)
228 PRK13545 tagH teichoic acids e 99.9 1.6E-21 3.4E-26 181.3 12.6 150 97-247 24-215 (549)
229 TIGR02982 heterocyst_DevA ABC 99.9 2E-21 4.4E-26 164.1 12.2 149 97-247 4-213 (220)
230 TIGR02770 nickel_nikD nickel i 99.9 1.2E-21 2.7E-26 166.6 11.0 136 112-247 2-198 (230)
231 PRK14259 phosphate ABC transpo 99.9 2.2E-21 4.7E-26 168.9 12.7 147 97-247 16-225 (269)
232 COG0488 Uup ATPase components 99.9 2.1E-21 4.6E-26 182.0 13.5 148 97-247 6-222 (530)
233 cd03267 ABC_NatA_like Similar 99.9 1.5E-21 3.2E-26 166.8 11.1 136 111-247 36-226 (236)
234 PRK14267 phosphate ABC transpo 99.9 3.5E-21 7.6E-26 165.9 13.6 147 97-246 7-219 (253)
235 COG4598 HisP ABC-type histidin 99.9 3.6E-22 7.9E-27 160.0 6.8 146 99-247 11-224 (256)
236 CHL00131 ycf16 sulfate ABC tra 99.9 3.2E-21 7E-26 166.0 13.2 147 97-246 10-223 (252)
237 PRK14249 phosphate ABC transpo 99.9 3.4E-21 7.4E-26 165.9 13.3 147 97-246 7-217 (251)
238 PRK14240 phosphate transporter 99.9 2E-21 4.4E-26 167.1 11.9 147 97-246 6-216 (250)
239 TIGR02633 xylG D-xylose ABC tr 99.9 2.1E-21 4.6E-26 182.7 13.0 149 97-247 4-213 (500)
240 PRK14265 phosphate ABC transpo 99.9 2.9E-21 6.3E-26 168.5 12.9 148 97-247 23-232 (274)
241 PRK13547 hmuV hemin importer A 99.9 3.4E-21 7.3E-26 167.9 13.0 148 97-246 4-226 (272)
242 PRK14235 phosphate transporter 99.9 3E-21 6.6E-26 167.8 12.6 146 97-246 22-233 (267)
243 COG2804 PulE Type II secretory 99.9 3.2E-20 7E-25 169.7 19.7 204 26-245 138-372 (500)
244 PRK15064 ABC transporter ATP-b 99.9 3.5E-21 7.6E-26 182.4 13.9 149 97-247 322-507 (530)
245 PRK11819 putative ABC transpor 99.9 3.5E-21 7.6E-26 183.3 13.9 149 97-247 9-232 (556)
246 PRK10636 putative ABC transpor 99.9 3.4E-21 7.3E-26 185.9 13.9 149 97-247 4-218 (638)
247 PRK14272 phosphate ABC transpo 99.9 4.7E-21 1E-25 165.0 13.4 147 97-246 7-218 (252)
248 PRK10636 putative ABC transpor 99.9 3.7E-21 7.9E-26 185.7 14.0 149 97-247 315-499 (638)
249 PRK13546 teichoic acids export 99.9 2.2E-21 4.8E-26 168.4 11.2 135 111-246 39-214 (264)
250 PRK14262 phosphate ABC transpo 99.9 3.4E-21 7.5E-26 165.7 12.2 146 97-246 6-216 (250)
251 PRK14241 phosphate transporter 99.9 4.2E-21 9.2E-26 166.0 12.9 147 97-246 7-218 (258)
252 PRK13409 putative ATPase RIL; 99.9 2.9E-21 6.2E-26 184.5 12.8 147 98-247 344-526 (590)
253 PRK14254 phosphate ABC transpo 99.9 3.8E-21 8.2E-26 168.7 12.5 145 97-245 42-249 (285)
254 TIGR02538 type_IV_pilB type IV 99.9 4E-20 8.7E-25 175.8 20.3 207 25-245 194-430 (564)
255 PRK14245 phosphate ABC transpo 99.9 6E-21 1.3E-25 164.3 13.3 148 97-247 6-217 (250)
256 PRK14269 phosphate ABC transpo 99.9 4.8E-21 1E-25 164.6 12.6 147 97-246 5-212 (246)
257 PRK14256 phosphate ABC transpo 99.9 4.4E-21 9.5E-26 165.3 12.4 147 97-246 7-218 (252)
258 PRK10261 glutathione transport 99.9 3.4E-21 7.5E-26 185.5 13.0 150 97-247 316-536 (623)
259 PRK14270 phosphate ABC transpo 99.9 5.7E-21 1.2E-25 164.5 12.8 146 97-246 7-217 (251)
260 PRK15134 microcin C ABC transp 99.9 2.9E-21 6.2E-26 183.0 12.0 151 97-247 8-229 (529)
261 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.3E-21 5E-26 189.5 11.6 147 97-243 480-680 (710)
262 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5.4E-21 1.2E-25 181.9 13.9 148 97-246 7-229 (552)
263 COG1119 ModF ABC-type molybden 99.9 3.3E-21 7.2E-26 161.4 10.5 143 97-242 34-241 (257)
264 COG1137 YhbG ABC-type (unclass 99.9 2.3E-22 4.9E-27 163.5 3.4 143 98-243 8-208 (243)
265 PRK14239 phosphate transporter 99.9 8.6E-21 1.9E-25 163.4 13.3 147 97-246 8-218 (252)
266 PRK14253 phosphate ABC transpo 99.9 5.9E-21 1.3E-25 164.2 12.3 147 97-246 6-215 (249)
267 cd03236 ABC_RNaseL_inhibitor_d 99.9 5E-21 1.1E-25 165.3 11.8 145 99-246 5-210 (255)
268 PRK11147 ABC transporter ATPas 99.9 6.7E-21 1.4E-25 183.9 14.0 148 97-247 6-225 (635)
269 PRK14251 phosphate ABC transpo 99.9 7E-21 1.5E-25 163.9 12.7 146 97-246 7-217 (251)
270 PRK14238 phosphate transporter 99.9 7.7E-21 1.7E-25 165.6 13.0 147 97-246 27-237 (271)
271 PRK10261 glutathione transport 99.9 4E-21 8.7E-26 185.1 12.2 150 97-247 15-241 (623)
272 PRK14274 phosphate ABC transpo 99.8 7.8E-21 1.7E-25 164.4 12.7 147 97-246 15-225 (259)
273 TIGR03771 anch_rpt_ABC anchore 99.8 7E-21 1.5E-25 161.3 12.1 130 118-247 2-185 (223)
274 PRK14236 phosphate transporter 99.8 7.8E-21 1.7E-25 165.6 12.6 148 97-247 28-239 (272)
275 PRK14258 phosphate ABC transpo 99.8 1.3E-20 2.9E-25 163.2 13.7 149 97-247 10-223 (261)
276 PRK14275 phosphate ABC transpo 99.8 7.3E-21 1.6E-25 167.0 12.2 147 97-247 42-253 (286)
277 PRK14264 phosphate ABC transpo 99.8 7.6E-21 1.7E-25 168.3 12.4 146 97-245 48-269 (305)
278 COG4604 CeuD ABC-type enteroch 99.8 8.6E-22 1.9E-26 159.8 5.7 147 97-247 4-208 (252)
279 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 4.5E-21 9.8E-26 186.8 11.9 147 97-243 454-653 (686)
280 PRK14237 phosphate transporter 99.8 7.5E-21 1.6E-25 165.3 11.9 147 97-246 23-233 (267)
281 PRK11147 ABC transporter ATPas 99.8 1.2E-20 2.6E-25 182.2 14.2 149 97-247 322-509 (635)
282 PRK14255 phosphate ABC transpo 99.8 1.9E-20 4.1E-25 161.3 13.9 147 97-246 8-218 (252)
283 PRK11176 lipid transporter ATP 99.8 7.9E-21 1.7E-25 181.8 12.7 147 97-243 344-547 (582)
284 TIGR02868 CydC thiol reductant 99.8 7E-21 1.5E-25 180.3 12.2 137 97-234 337-528 (529)
285 PRK14246 phosphate ABC transpo 99.8 1.1E-20 2.5E-25 163.3 12.3 147 97-246 13-223 (257)
286 PRK14263 phosphate ABC transpo 99.8 1.3E-20 2.8E-25 163.4 12.5 147 97-246 11-219 (261)
287 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.4E-20 3.1E-25 179.1 14.0 149 97-247 325-512 (552)
288 PRK14243 phosphate transporter 99.8 1.7E-20 3.8E-25 162.8 13.4 147 97-247 13-222 (264)
289 COG4175 ProV ABC-type proline/ 99.8 6.9E-21 1.5E-25 164.3 10.6 132 112-245 44-235 (386)
290 TIGR01842 type_I_sec_PrtD type 99.8 1.2E-20 2.7E-25 179.2 13.5 147 97-243 319-522 (544)
291 COG4608 AppF ABC-type oligopep 99.8 5.5E-21 1.2E-25 162.8 9.9 135 110-247 27-182 (268)
292 PRK14260 phosphate ABC transpo 99.8 1.9E-20 4E-25 162.1 13.4 148 97-247 10-221 (259)
293 TIGR03269 met_CoM_red_A2 methy 99.8 1.1E-20 2.5E-25 178.5 12.8 150 97-247 282-500 (520)
294 PRK13549 xylose transporter AT 99.8 6.9E-21 1.5E-25 179.5 11.3 136 111-247 277-477 (506)
295 PRK14271 phosphate ABC transpo 99.8 1.2E-20 2.5E-25 164.9 11.8 147 97-246 24-233 (276)
296 cd03288 ABCC_SUR2 The SUR doma 99.8 2.1E-20 4.6E-25 161.6 13.1 148 97-245 22-224 (257)
297 PRK14244 phosphate ABC transpo 99.8 1.5E-20 3.2E-25 161.9 12.0 147 97-246 8-219 (251)
298 PRK15177 Vi polysaccharide exp 99.8 1.4E-20 3E-25 158.5 11.5 134 112-246 3-174 (213)
299 PRK14257 phosphate ABC transpo 99.8 1.1E-20 2.3E-25 168.9 11.4 150 97-247 83-296 (329)
300 TIGR03375 type_I_sec_LssB type 99.8 1.4E-20 3E-25 183.6 13.1 147 97-243 466-668 (694)
301 COG1123 ATPase components of v 99.8 1.4E-20 3E-25 174.4 12.3 155 97-252 8-231 (539)
302 PRK09700 D-allose transporter 99.8 1.2E-20 2.5E-25 178.0 11.8 137 111-247 278-481 (510)
303 PRK03695 vitamin B12-transport 99.8 1.5E-20 3.2E-25 161.8 11.4 134 111-246 11-204 (248)
304 PLN03073 ABC transporter F fam 99.8 2.2E-20 4.9E-25 181.6 13.9 150 97-247 511-696 (718)
305 PRK14261 phosphate ABC transpo 99.8 2.9E-20 6.3E-25 160.3 13.1 147 97-246 9-219 (253)
306 PRK14252 phosphate ABC transpo 99.8 4.9E-20 1.1E-24 160.0 14.6 147 97-246 19-231 (265)
307 cd03289 ABCC_CFTR2 The CFTR su 99.8 2.1E-20 4.6E-25 163.0 12.3 145 97-245 5-206 (275)
308 PRK11819 putative ABC transpor 99.8 3E-20 6.6E-25 176.9 14.3 149 97-247 327-514 (556)
309 TIGR02857 CydD thiol reductant 99.8 1.6E-20 3.4E-25 177.8 12.2 146 97-242 323-524 (529)
310 PRK13657 cyclic beta-1,2-gluca 99.8 2.3E-20 5E-25 178.8 13.3 146 97-243 337-538 (588)
311 TIGR02633 xylG D-xylose ABC tr 99.8 1.4E-20 3.1E-25 177.1 11.6 136 111-247 275-475 (500)
312 PRK15134 microcin C ABC transp 99.8 1.7E-20 3.6E-25 177.7 11.7 149 97-247 278-498 (529)
313 cd03291 ABCC_CFTR1 The CFTR su 99.8 5.3E-20 1.1E-24 161.1 13.4 134 111-245 52-228 (282)
314 PRK11174 cysteine/glutathione 99.8 3E-20 6.4E-25 178.1 12.9 145 97-243 352-552 (588)
315 PRK10982 galactose/methyl gala 99.8 1.8E-20 3.9E-25 176.0 10.8 136 111-247 263-463 (491)
316 PRK14266 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 158.1 13.1 146 97-246 6-216 (250)
317 TIGR02203 MsbA_lipidA lipid A 99.8 2.5E-20 5.4E-25 177.9 11.7 147 97-243 333-536 (571)
318 TIGR01257 rim_protein retinal- 99.8 2.9E-20 6.2E-25 194.5 12.9 150 97-247 1940-2142(2272)
319 PRK10789 putative multidrug tr 99.8 3.9E-20 8.5E-25 176.6 12.8 147 97-243 316-518 (569)
320 COG1134 TagH ABC-type polysacc 99.8 3E-20 6.5E-25 155.7 10.4 138 110-247 41-219 (249)
321 KOG0058 Peptide exporter, ABC 99.8 1.9E-20 4E-25 176.5 10.1 147 97-243 468-671 (716)
322 PRK15439 autoinducer 2 ABC tra 99.8 2.4E-20 5.1E-25 176.0 10.9 137 111-247 278-475 (510)
323 TIGR00958 3a01208 Conjugate Tr 99.8 2.6E-20 5.7E-25 182.0 11.5 147 97-243 481-682 (711)
324 PRK10790 putative multidrug tr 99.8 3.9E-20 8.5E-25 177.4 12.1 146 97-243 343-543 (592)
325 PRK11288 araG L-arabinose tran 99.8 3.2E-20 6.9E-25 174.8 11.2 136 111-247 268-468 (501)
326 COG4161 ArtP ABC-type arginine 99.8 3.6E-20 7.9E-25 146.2 9.4 145 98-245 6-211 (242)
327 PRK11160 cysteine/glutathione 99.8 5.8E-20 1.3E-24 175.6 12.8 147 97-243 341-542 (574)
328 cd01129 PulE-GspE PulE/GspE Th 99.8 4.1E-19 8.8E-24 154.1 16.6 160 74-245 19-194 (264)
329 COG4618 ArpD ABC-type protease 99.8 4.2E-20 9.2E-25 167.8 10.7 136 109-244 349-541 (580)
330 TIGR01193 bacteriocin_ABC ABC- 99.8 3.7E-20 8E-25 181.0 11.0 146 97-243 476-677 (708)
331 PRK10762 D-ribose transporter 99.8 4.5E-20 9.7E-25 173.8 11.1 137 111-247 267-467 (501)
332 COG3845 ABC-type uncharacteriz 99.8 5.8E-20 1.3E-24 166.7 11.2 146 97-245 7-210 (501)
333 PRK13409 putative ATPase RIL; 99.8 5.5E-20 1.2E-24 175.7 11.6 144 99-246 78-282 (590)
334 PRK10938 putative molybdenum t 99.8 5.6E-20 1.2E-24 172.6 11.4 148 97-246 263-474 (490)
335 TIGR00954 3a01203 Peroxysomal 99.8 1.2E-19 2.7E-24 175.7 14.1 146 97-243 454-647 (659)
336 TIGR01192 chvA glucan exporter 99.8 9E-20 2E-24 174.7 13.0 145 97-242 337-537 (585)
337 COG4987 CydC ABC-type transpor 99.8 5.2E-20 1.1E-24 168.4 10.7 147 97-245 339-543 (573)
338 TIGR01846 type_I_sec_HlyB type 99.8 6.5E-20 1.4E-24 178.9 12.1 146 97-243 458-660 (694)
339 COG1129 MglA ABC-type sugar tr 99.8 8.6E-20 1.9E-24 168.0 11.9 146 97-245 11-215 (500)
340 COG4988 CydD ABC-type transpor 99.8 6.8E-20 1.5E-24 169.5 11.1 145 98-244 324-524 (559)
341 PLN03073 ABC transporter F fam 99.8 1.4E-19 3E-24 176.1 13.7 148 97-247 180-413 (718)
342 TIGR02204 MsbA_rel ABC transpo 99.8 1.1E-19 2.4E-24 173.7 12.7 147 97-243 340-543 (576)
343 TIGR01194 cyc_pep_trnsptr cycl 99.8 1E-19 2.2E-24 173.3 12.0 145 97-242 340-538 (555)
344 COG4778 PhnL ABC-type phosphon 99.8 5.2E-20 1.1E-24 146.4 8.1 138 109-247 24-224 (235)
345 PRK10522 multidrug transporter 99.8 1.6E-19 3.5E-24 171.7 12.7 145 97-242 325-517 (547)
346 KOG0055 Multidrug/pheromone ex 99.8 9.6E-20 2.1E-24 180.3 11.1 144 97-242 353-555 (1228)
347 TIGR01257 rim_protein retinal- 99.8 1.8E-19 3.8E-24 188.7 13.1 149 97-247 931-1132(2272)
348 PLN03211 ABC transporter G-25; 99.8 1.4E-19 3E-24 175.0 11.2 145 98-244 72-277 (659)
349 COG4133 CcmA ABC-type transpor 99.8 1.4E-19 3E-24 146.0 9.3 135 99-236 7-191 (209)
350 COG4619 ABC-type uncharacteriz 99.8 5.9E-20 1.3E-24 145.7 6.9 130 110-240 17-199 (223)
351 COG4674 Uncharacterized ABC-ty 99.8 5.4E-20 1.2E-24 149.2 6.8 146 97-246 8-217 (249)
352 COG0396 sufC Cysteine desulfur 99.8 4.4E-19 9.5E-24 147.3 12.2 155 97-252 6-221 (251)
353 KOG0057 Mitochondrial Fe/S clu 99.8 3.3E-19 7.3E-24 163.3 11.9 145 97-244 354-555 (591)
354 COG0488 Uup ATPase components 99.8 1.9E-19 4.2E-24 168.8 10.5 150 97-247 324-508 (530)
355 COG4107 PhnK ABC-type phosphon 99.8 2.6E-19 5.5E-24 143.0 9.5 147 98-247 10-224 (258)
356 cd01130 VirB11-like_ATPase Typ 99.8 6.8E-19 1.5E-23 145.1 12.0 133 111-250 14-150 (186)
357 PRK10535 macrolide transporter 99.8 7.6E-19 1.6E-23 170.0 14.0 149 97-246 7-214 (648)
358 COG4586 ABC-type uncharacteriz 99.8 1.3E-19 2.9E-24 153.6 7.4 136 110-246 38-228 (325)
359 TIGR01187 potA spermidine/putr 99.8 3E-19 6.5E-24 159.4 10.1 66 181-246 99-172 (325)
360 COG4178 ABC-type uncharacteriz 99.8 7.7E-19 1.7E-23 164.8 12.1 146 97-243 395-582 (604)
361 PTZ00265 multidrug resistance 99.8 5.3E-19 1.2E-23 183.1 11.9 148 97-244 1168-1428(1466)
362 PLN03232 ABC transporter C fam 99.8 1.3E-18 2.8E-23 181.2 13.9 148 97-244 1237-1439(1495)
363 COG4136 ABC-type uncharacteriz 99.8 1.7E-18 3.8E-23 135.1 10.8 138 97-236 5-196 (213)
364 cd01131 PilT Pilus retraction 99.8 2.7E-18 5.9E-23 142.9 12.6 118 123-245 2-119 (198)
365 COG1132 MdlB ABC-type multidru 99.8 1.1E-18 2.4E-23 166.6 11.6 145 97-243 331-532 (567)
366 COG4148 ModC ABC-type molybdat 99.8 1.1E-18 2.3E-23 148.6 9.8 129 117-246 19-200 (352)
367 PTZ00265 multidrug resistance 99.8 1.1E-18 2.3E-23 180.9 11.8 145 97-242 385-647 (1466)
368 PLN03130 ABC transporter C fam 99.8 1.7E-18 3.7E-23 180.9 12.7 148 97-244 1240-1442(1622)
369 cd03270 ABC_UvrA_I The excisio 99.8 4.2E-18 9.1E-23 144.6 12.5 66 180-246 135-209 (226)
370 PLN03232 ABC transporter C fam 99.8 3.9E-18 8.5E-23 177.6 12.9 147 97-243 617-808 (1495)
371 PTZ00243 ABC transporter; Prov 99.8 3.5E-18 7.6E-23 178.2 12.6 148 97-244 1311-1514(1560)
372 KOG0062 ATPase component of AB 99.8 2.4E-18 5.1E-23 156.6 9.8 147 98-247 84-267 (582)
373 TIGR00957 MRP_assoc_pro multi 99.8 4.1E-18 9E-23 177.7 12.6 148 97-244 1287-1489(1522)
374 TIGR00957 MRP_assoc_pro multi 99.7 8.4E-18 1.8E-22 175.4 13.2 145 97-241 639-828 (1522)
375 PLN03130 ABC transporter C fam 99.7 9.1E-18 2E-22 175.5 13.3 147 97-243 617-808 (1622)
376 cd03278 ABC_SMC_barmotin Barmo 99.7 1.3E-17 2.8E-22 138.8 11.2 129 113-245 14-185 (197)
377 TIGR00955 3a01204 The Eye Pigm 99.7 9.4E-18 2E-22 161.6 11.2 135 111-245 40-238 (617)
378 KOG0055 Multidrug/pheromone ex 99.7 1E-17 2.2E-22 166.1 11.5 145 97-243 990-1193(1228)
379 COG4172 ABC-type uncharacteriz 99.7 6.2E-18 1.3E-22 150.3 8.9 135 111-247 302-499 (534)
380 TIGR01271 CFTR_protein cystic 99.7 1.3E-17 2.8E-22 173.6 12.5 145 97-243 1220-1420(1490)
381 COG4167 SapF ABC-type antimicr 99.7 1.2E-17 2.6E-22 134.4 9.5 136 110-246 27-221 (267)
382 TIGR00956 3a01205 Pleiotropic 99.7 1.5E-17 3.3E-22 172.0 12.6 140 98-237 763-964 (1394)
383 cd03279 ABC_sbcCD SbcCD and ot 99.7 2E-17 4.4E-22 139.1 10.5 128 120-247 26-205 (213)
384 KOG0061 Transporter, ABC super 99.7 7.6E-17 1.6E-21 154.6 13.5 138 109-246 43-243 (613)
385 TIGR01271 CFTR_protein cystic 99.7 4.3E-17 9.3E-22 169.8 11.9 131 111-241 441-614 (1490)
386 PTZ00243 ABC transporter; Prov 99.7 4.2E-17 9.2E-22 170.2 11.4 131 111-241 675-848 (1560)
387 PF00005 ABC_tran: ABC transpo 99.7 8.5E-18 1.8E-22 131.3 4.6 97 113-211 2-137 (137)
388 COG4172 ABC-type uncharacteriz 99.7 1.6E-16 3.4E-21 141.4 12.8 149 98-246 10-229 (534)
389 KOG0060 Long-chain acyl-CoA tr 99.7 1.3E-16 2.9E-21 147.1 12.2 131 111-241 450-633 (659)
390 KOG0059 Lipid exporter ABCA1 a 99.7 6.6E-17 1.4E-21 161.0 11.1 144 99-247 569-770 (885)
391 PLN03140 ABC transporter G fam 99.7 5.5E-17 1.2E-21 167.9 10.9 133 111-243 895-1089(1470)
392 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.3E-16 2.9E-21 136.5 11.0 66 180-246 156-232 (243)
393 COG1101 PhnK ABC-type uncharac 99.7 1.5E-16 3.3E-21 131.0 9.4 132 110-245 20-219 (263)
394 cd03240 ABC_Rad50 The catalyti 99.7 1.8E-16 4E-21 132.5 9.6 123 119-242 20-190 (204)
395 KOG0927 Predicted transporter 99.7 1.9E-16 4.2E-21 145.0 10.2 148 97-247 78-291 (614)
396 cd03271 ABC_UvrA_II The excisi 99.7 6.2E-16 1.4E-20 133.6 12.2 65 181-246 168-242 (261)
397 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.7E-16 5.8E-21 131.1 8.5 123 114-243 19-159 (200)
398 TIGR00956 3a01205 Pleiotropic 99.7 2.7E-16 5.9E-21 162.8 10.4 133 111-244 76-281 (1394)
399 COG1245 Predicted ATPase, RNas 99.6 6.3E-16 1.4E-20 139.3 9.6 129 119-247 364-528 (591)
400 PLN03140 ABC transporter G fam 99.6 2.8E-16 6E-21 162.7 8.3 135 110-244 179-408 (1470)
401 KOG0927 Predicted transporter 99.6 5E-16 1.1E-20 142.3 8.3 149 98-247 393-578 (614)
402 KOG0066 eIF2-interacting prote 99.6 9.1E-16 2E-20 137.8 8.2 140 97-237 589-763 (807)
403 KOG0064 Peroxisomal long-chain 99.6 1.5E-15 3.1E-20 138.9 8.6 129 112-241 498-675 (728)
404 KOG0056 Heavy metal exporter H 99.6 1.8E-15 4E-20 137.3 8.9 136 97-236 540-734 (790)
405 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2.1E-15 4.6E-20 129.9 8.7 63 181-244 165-238 (251)
406 cd03227 ABC_Class2 ABC-type Cl 99.6 6E-15 1.3E-19 119.0 9.9 118 121-242 20-148 (162)
407 COG5265 ATM1 ABC-type transpor 99.6 4.4E-15 9.6E-20 132.8 9.2 137 98-237 266-460 (497)
408 cd03239 ABC_SMC_head The struc 99.6 6.9E-15 1.5E-19 120.4 9.1 114 124-242 24-165 (178)
409 cd03274 ABC_SMC4_euk Eukaryoti 99.6 1.4E-14 3E-19 121.9 10.8 63 180-243 125-198 (212)
410 COG1855 ATPase (PilT family) [ 99.6 9.3E-15 2E-19 131.5 10.0 214 19-247 142-377 (604)
411 cd03243 ABC_MutS_homologs The 99.6 9.9E-15 2.1E-19 121.8 9.6 121 119-242 26-158 (202)
412 KOG0054 Multidrug resistance-a 99.6 1.7E-14 3.7E-19 146.1 13.1 146 97-243 1141-1342(1381)
413 cd03275 ABC_SMC1_euk Eukaryoti 99.6 1.5E-14 3.2E-19 124.5 9.7 63 181-243 154-227 (247)
414 cd03276 ABC_SMC6_euk Eukaryoti 99.6 4.6E-14 1E-18 117.5 11.7 64 179-242 106-183 (198)
415 KOG0054 Multidrug resistance-a 99.5 6.3E-14 1.4E-18 142.0 13.5 133 111-243 536-711 (1381)
416 COG4138 BtuD ABC-type cobalami 99.5 8.4E-15 1.8E-19 117.3 4.1 122 113-236 16-193 (248)
417 COG4615 PvdE ABC-type sideroph 99.5 4E-14 8.6E-19 125.9 8.0 125 112-237 339-511 (546)
418 COG1245 Predicted ATPase, RNas 99.5 1.1E-13 2.3E-18 125.1 10.5 127 119-245 97-283 (591)
419 cd03283 ABC_MutS-like MutS-lik 99.5 9.8E-14 2.1E-18 115.6 9.2 120 119-241 22-154 (199)
420 KOG0065 Pleiotropic drug resis 99.5 2.6E-14 5.7E-19 142.5 5.4 139 108-246 803-1003(1391)
421 cd03285 ABC_MSH2_euk MutS2 hom 99.5 4.6E-13 9.9E-18 113.4 11.7 125 112-243 20-161 (222)
422 cd03282 ABC_MSH4_euk MutS4 hom 99.5 1.7E-13 3.7E-18 114.5 8.4 127 112-242 19-158 (204)
423 KOG0062 ATPase component of AB 99.5 1.3E-13 2.9E-18 125.9 8.3 148 98-247 366-551 (582)
424 TIGR00630 uvra excinuclease AB 99.4 6.7E-13 1.5E-17 131.8 12.2 64 182-246 828-901 (924)
425 PRK00635 excinuclease ABC subu 99.4 9.9E-13 2.1E-17 136.6 11.9 64 182-246 809-882 (1809)
426 smart00534 MUTSac ATPase domai 99.4 1.1E-12 2.4E-17 108.0 9.7 109 125-242 2-129 (185)
427 PRK00349 uvrA excinuclease ABC 99.4 1.9E-12 4.1E-17 128.9 12.5 64 182-246 830-903 (943)
428 cd03284 ABC_MutS1 MutS1 homolo 99.4 1.6E-12 3.4E-17 109.7 10.1 123 112-242 21-160 (216)
429 cd03277 ABC_SMC5_euk Eukaryoti 99.4 2.7E-12 5.9E-17 108.0 10.3 55 181-235 125-192 (213)
430 cd03281 ABC_MSH5_euk MutS5 hom 99.4 5.7E-12 1.2E-16 106.1 11.4 116 123-242 30-161 (213)
431 KOG2355 Predicted ABC-type tra 99.4 3.4E-12 7.3E-17 104.9 9.5 142 97-241 16-214 (291)
432 KOG0066 eIF2-interacting prote 99.4 9.5E-13 2.1E-17 118.6 6.8 147 97-247 267-481 (807)
433 COG1129 MglA ABC-type sugar tr 99.3 2.7E-12 5.8E-17 118.8 8.3 135 111-246 274-472 (500)
434 COG2401 ABC-type ATPase fused 99.3 2.6E-12 5.6E-17 115.1 7.0 131 111-242 398-575 (593)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2.1E-11 4.6E-16 103.1 9.3 128 112-242 21-161 (222)
436 TIGR01069 mutS2 MutS2 family p 99.2 1.3E-11 2.8E-16 121.2 7.1 121 118-240 317-450 (771)
437 COG4170 SapD ABC-type antimicr 99.2 2.2E-11 4.7E-16 100.6 6.0 145 97-244 6-228 (330)
438 cd03241 ABC_RecN RecN ATPase i 99.2 1.1E-10 2.4E-15 102.0 9.6 60 183-242 171-240 (276)
439 PRK13695 putative NTPase; Prov 99.2 2.6E-10 5.6E-15 92.8 10.5 118 124-242 2-143 (174)
440 cd01120 RecA-like_NTPases RecA 99.1 5.7E-10 1.2E-14 88.4 10.3 114 124-238 1-140 (165)
441 PRK00635 excinuclease ABC subu 99.1 7.8E-10 1.7E-14 115.4 14.0 60 182-241 1699-1768(1809)
442 PRK00409 recombination and DNA 99.1 1.6E-10 3.5E-15 113.9 7.5 118 122-243 327-458 (782)
443 smart00382 AAA ATPases associa 99.1 1.8E-09 3.9E-14 82.5 10.6 111 122-234 2-125 (148)
444 PRK08533 flagellar accessory p 99.0 1.9E-09 4.1E-14 91.9 11.2 117 117-235 19-163 (230)
445 cd03286 ABC_MSH6_euk MutS6 hom 99.0 6.5E-10 1.4E-14 93.8 7.5 128 112-242 20-160 (218)
446 COG0178 UvrA Excinuclease ATPa 99.0 1.9E-09 4.2E-14 103.6 9.8 59 183-241 823-891 (935)
447 cd01124 KaiC KaiC is a circadi 98.9 4.5E-09 9.7E-14 85.9 8.9 113 124-237 1-142 (187)
448 KOG0063 RNAse L inhibitor, ABC 98.9 1.7E-09 3.7E-14 97.5 6.8 125 123-247 368-529 (592)
449 cd03242 ABC_RecF RecF is a rec 98.9 5.6E-09 1.2E-13 91.0 9.6 59 183-241 184-255 (270)
450 COG3845 ABC-type uncharacteriz 98.9 1.5E-08 3.3E-13 92.8 11.4 135 111-246 273-474 (501)
451 COG3910 Predicted ATPase [Gene 98.8 3E-08 6.4E-13 80.7 9.3 55 183-238 130-191 (233)
452 KOG0065 Pleiotropic drug resis 98.8 4.1E-09 8.9E-14 106.0 4.8 137 109-245 128-333 (1391)
453 COG1618 Predicted nucleotide k 98.8 4.3E-08 9.3E-13 77.8 8.9 108 123-236 6-141 (179)
454 PF02463 SMC_N: RecF/RecN/SMC 98.8 7.1E-08 1.5E-12 81.2 10.6 63 182-244 136-208 (220)
455 PRK06067 flagellar accessory p 98.7 9.1E-08 2E-12 81.5 9.7 118 117-236 20-166 (234)
456 cd00009 AAA The AAA+ (ATPases 98.6 1.7E-07 3.7E-12 72.2 8.5 102 122-236 19-131 (151)
457 TIGR00630 uvra excinuclease AB 98.6 7E-08 1.5E-12 96.5 6.8 68 179-247 484-560 (924)
458 PRK05399 DNA mismatch repair p 98.6 2E-07 4.2E-12 93.2 9.6 119 120-242 605-737 (854)
459 KOG0063 RNAse L inhibitor, ABC 98.6 8E-08 1.7E-12 86.9 5.7 127 119-245 97-283 (592)
460 PF13304 AAA_21: AAA domain; P 98.6 6.6E-08 1.4E-12 81.2 5.0 55 184-238 238-302 (303)
461 PRK00349 uvrA excinuclease ABC 98.5 1.1E-07 2.5E-12 95.2 6.6 68 178-246 485-561 (943)
462 PRK06793 fliI flagellum-specif 98.5 8.1E-07 1.7E-11 81.9 10.8 123 117-242 151-293 (432)
463 PRK09183 transposase/IS protei 98.5 2.6E-07 5.5E-12 80.1 7.0 39 119-158 99-137 (259)
464 PTZ00132 GTP-binding nuclear p 98.5 2.8E-07 6E-12 77.3 6.4 33 187-219 157-194 (215)
465 cd00820 PEPCK_HprK Phosphoenol 98.4 1.3E-07 2.8E-12 70.7 2.8 32 112-143 5-36 (107)
466 cd01128 rho_factor Transcripti 98.4 5.8E-07 1.3E-11 77.4 7.1 31 119-149 13-43 (249)
467 PRK04296 thymidine kinase; Pro 98.4 2.7E-06 5.8E-11 70.3 10.8 111 122-236 2-117 (190)
468 PF00488 MutS_V: MutS domain V 98.4 6.5E-07 1.4E-11 76.5 6.8 112 123-241 44-172 (235)
469 PF03266 NTPase_1: NTPase; In 98.4 6.8E-08 1.5E-12 78.4 0.8 42 193-235 89-135 (168)
470 PRK14088 dnaA chromosomal repl 98.4 3.2E-07 7E-12 85.3 5.1 114 124-252 132-255 (440)
471 PF00004 AAA: ATPase family as 98.3 1.7E-06 3.7E-11 66.1 7.2 68 125-211 1-69 (132)
472 PTZ00454 26S protease regulato 98.3 2.5E-06 5.5E-11 78.2 9.4 73 119-210 176-248 (398)
473 TIGR03238 dnd_assoc_3 dnd syst 98.3 5.2E-07 1.1E-11 83.4 4.5 44 111-156 21-64 (504)
474 PF01695 IstB_IS21: IstB-like 98.3 5.1E-07 1.1E-11 73.9 3.9 111 119-246 44-163 (178)
475 TIGR00618 sbcc exonuclease Sbc 98.3 1E-06 2.3E-11 90.1 6.8 70 178-247 946-1032(1042)
476 PRK06526 transposase; Provisio 98.3 9E-07 2E-11 76.5 5.1 37 119-156 95-131 (254)
477 PF13555 AAA_29: P-loop contai 98.3 9E-07 2E-11 59.4 3.6 28 122-149 23-50 (62)
478 KOG0734 AAA+-type ATPase conta 98.3 6.5E-06 1.4E-10 76.5 10.3 70 123-211 338-407 (752)
479 PRK10416 signal recognition pa 98.3 2.5E-06 5.5E-11 76.0 7.4 91 120-211 112-207 (318)
480 PRK08181 transposase; Validate 98.2 2.1E-06 4.5E-11 74.8 6.2 40 118-158 102-141 (269)
481 cd01121 Sms Sms (bacterial rad 98.2 1.2E-06 2.7E-11 79.6 5.0 109 119-235 79-210 (372)
482 PRK06835 DNA replication prote 98.2 2.3E-06 5E-11 76.6 6.1 117 121-252 182-308 (329)
483 TIGR01243 CDC48 AAA family ATP 98.2 8.7E-06 1.9E-10 80.5 10.5 72 119-209 209-280 (733)
484 PRK10246 exonuclease subunit S 98.2 3.1E-06 6.7E-11 86.6 7.3 68 178-245 945-1027(1047)
485 PRK06893 DNA replication initi 98.2 5.9E-06 1.3E-10 70.3 7.8 26 123-148 40-65 (229)
486 PF13173 AAA_14: AAA domain 98.2 9.7E-06 2.1E-10 62.5 8.3 96 122-236 2-100 (128)
487 PRK14722 flhF flagellar biosyn 98.2 1.3E-06 2.9E-11 79.1 3.8 46 113-158 128-174 (374)
488 PRK12377 putative replication 98.2 3.8E-06 8.3E-11 72.2 6.4 113 122-250 101-223 (248)
489 PRK11823 DNA repair protein Ra 98.2 3.9E-06 8.5E-11 78.2 6.9 115 118-235 76-208 (446)
490 PTZ00361 26 proteosome regulat 98.2 6.9E-06 1.5E-10 76.1 8.2 72 119-209 214-285 (438)
491 cd01125 repA Hexameric Replica 98.2 2.2E-05 4.7E-10 67.1 10.7 23 122-144 1-23 (239)
492 TIGR00235 udk uridine kinase. 98.1 1.5E-06 3.3E-11 72.7 3.2 29 120-148 4-32 (207)
493 PRK10078 ribose 1,5-bisphospho 98.1 2E-06 4.3E-11 70.7 3.8 27 122-148 2-28 (186)
494 PRK03918 chromosome segregatio 98.1 3.3E-06 7.2E-11 84.9 6.0 66 179-244 785-863 (880)
495 PRK09825 idnK D-gluconate kina 98.1 2.5E-06 5.4E-11 69.7 3.8 28 121-148 2-29 (176)
496 TIGR00634 recN DNA repair prot 98.1 5.7E-06 1.2E-10 79.3 6.8 63 181-245 439-512 (563)
497 TIGR00416 sms DNA repair prote 98.1 4E-06 8.7E-11 78.2 5.3 110 119-236 91-223 (454)
498 TIGR01070 mutS1 DNA mismatch r 98.1 1E-05 2.2E-10 80.8 8.3 116 122-241 592-721 (840)
499 cd03115 SRP The signal recogni 98.1 5.6E-05 1.2E-09 61.1 11.1 88 124-212 2-94 (173)
500 TIGR03015 pepcterm_ATPase puta 98.1 3.1E-05 6.6E-10 66.9 10.2 37 112-148 32-69 (269)
No 1
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=233.54 Aligned_cols=247 Identities=38% Similarity=0.526 Sum_probs=208.7
Q ss_pred chHHHHHHHccHHHHHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC-----CCc
Q 025371 2 NAFGAFWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG-----GDN 76 (254)
Q Consensus 2 ~~~~~~~~~l~~~l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-----~~~ 76 (254)
+++++++++||+.+++.|+.++++.+++||+++.++|+++++.+.. .+..-.++|.+|+..++++++.++ .+.
T Consensus 1 ~dleei~~iLPe~i~~~l~~~p~~~~l~Evri~v~Rp~e~~~~~~~--vyl~~~~vT~ed~~~~~~rls~ysiys~e~el 78 (308)
T COG3854 1 DDLEEIFSILPEKIRQILKEIPDRNNLEEVRIRVNRPLEAIFPGQP--VYLSYIGVTKEDLQKTLNRLSGYSIYSVEEEL 78 (308)
T ss_pred CCHHHHHHhChHHHHHHHHhCCccccceeeEeecCCCceEecCCCc--eecccccccHHHHHHHHHHhcccccccchhhh
Confidence 5789999999999999999999999999999999999999887764 467777899999999999998553 333
Q ss_pred eeE--EcCceeEEeEEecCCCc---------EEEEEEEECceeecchh-hhhccccCCcE-EEEECCCCCCHHHHHHHHH
Q 025371 77 RAG--IEGTLHRISAIRSRKGA---------IVGLTCRVGRAVSGHID-MVYDLLHYGKS-ILFVGRPGVGKTTVMREIA 143 (254)
Q Consensus 77 ~~~--~~~~~~Rv~~~~~~~g~---------~~~l~ir~~~~~~~~~~-~l~~~i~~g~~-~~i~G~~GsGKTTLl~~l~ 143 (254)
+.+ .....|||..+...... +.++++|..+++.|..+ .+..+...|.. ++++|||||||||||+.|+
T Consensus 79 r~Gyit~~ggHRVg~~g~~~~E~~~vkt~rdI~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdia 158 (308)
T COG3854 79 RAGYITIRGGHRVGLAGNVTLEEGKVKTIRDISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIA 158 (308)
T ss_pred hcceeEeeccceeeeccccccccccccceeeeceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHH
Confidence 333 22234777776655222 77999999999988887 56666778875 9999999999999999999
Q ss_pred hccCcC----CCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHH
Q 025371 144 RVLSDE----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR 219 (254)
Q Consensus 144 g~~~~~----~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~ 219 (254)
++++.. .+.++.++|++.|++.+ ..+++.....++++++.++.|...++.+...|.|++||+||+...+|+.+++
T Consensus 159 R~~s~g~~~~l~kkv~IiDersEIag~-~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ 237 (308)
T COG3854 159 RLLSDGINQFLPKKVGIIDERSEIAGC-LNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAIL 237 (308)
T ss_pred HHhhccccccCCceEEEEeccchhhcc-ccCCchhhhhhhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHH
Confidence 999875 46789999999999874 3333333334788999999999999999999999999999999999999999
Q ss_pred HHHhCCceEEEEEchhhHHHHhCChhhhhhhc
Q 025371 220 SIAERGVMLIGTAHGEWLENIIKNPILSDLVC 251 (254)
Q Consensus 220 ~~~~~G~~vi~t~H~~~~~~~~~~~~~~~l~~ 251 (254)
.+.+.|..++.|.|.+.+++...|+.+..|++
T Consensus 238 ta~~~GVkli~TaHG~~iedl~krp~lkdlv~ 269 (308)
T COG3854 238 TALHAGVKLITTAHGNGIEDLIKRPTLKDLVE 269 (308)
T ss_pred HHHhcCcEEEEeeccccHHHhhcChhHHHHHh
Confidence 99999999999999999999999999998873
No 2
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.97 E-value=2e-30 Score=221.73 Aligned_cols=212 Identities=20% Similarity=0.260 Sum_probs=176.1
Q ss_pred CCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhc----------ccCCCceeEEcCc-eeEEeEEecC
Q 025371 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG----------EFGGDNRAGIEGT-LHRISAIRSR 93 (254)
Q Consensus 25 ~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----------~~~~~~~~~~~~~-~~Rv~~~~~~ 93 (254)
..+++|||+..|.||.+|++|.. .+...+++|.+++..++..+- +.+-|+.+.++|. ++|+|++.++
T Consensus 14 ~~~aSDiHL~~G~pp~~Ri~G~l--~~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~qr 91 (353)
T COG2805 14 KNGASDLHLSAGLPPRIRIDGEL--RPINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPGVARFRVNAFKQR 91 (353)
T ss_pred hcCCCchhhccCCCceEEecCce--eecCCCCCCHHHHHHHHHHHhCHHHHHHHHHhcceeEEEecCCcceEEeehhhhc
Confidence 57999999999999999999987 366666799999998887652 3357889999876 5999999999
Q ss_pred CCcEEEEEEEECceee------cchhhhhcccc-CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC
Q 025371 94 KGAIVGLTCRVGRAVS------GHIDMVYDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD 166 (254)
Q Consensus 94 ~g~~~~l~ir~~~~~~------~~~~~l~~~i~-~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~ 166 (254)
+|. ++.+|..+... +.++.+...+. +...++++|||||||||.|.+|.++++.+...+|+++|++.|+.+.
T Consensus 92 ~~~--a~vlR~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~ 169 (353)
T COG2805 92 GGY--ALVLRLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHE 169 (353)
T ss_pred CCc--EEEEeccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhc
Confidence 887 89999866543 34555555544 4457999999999999999999999999888999999999987432
Q ss_pred CCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 167 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
.. -....+.++.....++..++.+||+.+||||+++|.++.+.......++++||.|+.|.|.+++.+.++|-+
T Consensus 170 ----sk-kslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~sA~~ti~Rii 243 (353)
T COG2805 170 ----SK-KSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKTIDRII 243 (353)
T ss_pred ----ch-HhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEecccccHHHHHHHHH
Confidence 11 111235566677888999999999999999999999999999999999999999999999999999987654
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.6e-29 Score=206.28 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=115.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-----------cccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGG 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-----------ei~~ 165 (254)
+.+++++|+... .++.++..+.+|+.++|+||+|||||||||||.++..++.| .|.+-++.. +++.
T Consensus 5 i~~l~K~fg~~~--VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeE--EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccchhhHHHHHHhcCe
Confidence 467888888755 48999999999999999999999999999999999999744 443322111 1111
Q ss_pred C----CCCCcccccc------------------------c----------cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 166 D----GDIPHSAIGT------------------------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 166 ~----~~~~~~~~~~------------------------~----------~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
. ..+||..+.. . .....+|||||||++|||||+++|+++++|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 1 2345543211 0 112235999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||+.+|++. +.++++.|.|++++||...++..+.++++.
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEE
Confidence 9999999986 667788999999999999999999988875
No 4
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=99.96 E-value=3.6e-28 Score=214.91 Aligned_cols=230 Identities=19% Similarity=0.199 Sum_probs=172.4
Q ss_pred HHHHHHHccHHHHHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeE
Q 025371 4 FGAFWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAG 79 (254)
Q Consensus 4 ~~~~~~~l~~~l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~ 79 (254)
-.+..+.|-+.|..+|++++++++|+||.+|....+|+...|.. ......+++++++.+++.++... +..+|.
T Consensus 7 ~~~~~~~~~~~l~~~l~~~l~D~~V~eI~iN~~~~v~v~~~g~~---~~~~~~l~~~~~~~~i~~lA~~~~~~~~~~~P~ 83 (323)
T PRK13833 7 HPRLVRKLQDALGDQLCVALDDATVVEIMLNPDGKLFIERLGHG---VAPAGEMSAAAAEVVIGSVAHALQSEADDERPI 83 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcEEEEECCCCEEEEEECCce---EEecCcCCHHHHHHHHHHHHHHhCCccCCCCce
Confidence 34555666667767788899999999999996656666444432 23335699999999988886542 466787
Q ss_pred EcCce----eEEeEEecCC--CcEEEEEEEECceeec--------------chhhhhccccCCcEEEEECCCCCCHHHHH
Q 025371 80 IEGTL----HRISAIRSRK--GAIVGLTCRVGRAVSG--------------HIDMVYDLLHYGKSILFVGRPGVGKTTVM 139 (254)
Q Consensus 80 ~~~~~----~Rv~~~~~~~--g~~~~l~ir~~~~~~~--------------~~~~l~~~i~~g~~~~i~G~~GsGKTTLl 139 (254)
+++++ +|++++.+|. |+ +++||+.+...- ..+.+..++..+.+++|+|++|||||||+
T Consensus 84 l~~~Lp~~g~Ri~~~~pp~~~~~--~~~IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 84 ISGELPIGGHRFEGLLPPVVSGP--AFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA 161 (323)
T ss_pred EEEEeCCCCEEEEEEcCCCCCCc--eEEEECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH
Confidence 87665 6999988773 44 899998764321 12445566778889999999999999999
Q ss_pred HHHHhccCc-CCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHH
Q 025371 140 REIARVLSD-EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218 (254)
Q Consensus 140 ~~l~g~~~~-~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~ 218 (254)
++|++.+.. ....+++++|+..|+.. ++.+... +. .+++.....++..+|+++||+|+++|.++. ++..+
T Consensus 162 ~aL~~~i~~~~~~~rivtiEd~~El~~----~~~n~v~---l~-~~~~~~~~~lv~~aLR~~PD~IivGEiRg~-ea~~~ 232 (323)
T PRK13833 162 NAVIAEIVASAPEDRLVILEDTAEIQC----AAENAVA---LH-TSDTVDMARLLKSTMRLRPDRIIVGEVRDG-AALTL 232 (323)
T ss_pred HHHHHHHhcCCCCceEEEecCCccccc----CCCCEEE---ec-cCCCcCHHHHHHHHhCCCCCEEEEeecCCH-HHHHH
Confidence 999998841 11578999999999853 3333221 11 134456778899999999999999999997 57778
Q ss_pred HHHHhCCc-eEEEEEchhhHHHHhCChhhh
Q 025371 219 RSIAERGV-MLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 219 ~~~~~~G~-~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.++.++|| ++++|.|++++.+++.|....
T Consensus 233 l~a~~tGh~G~itTiHA~s~~~a~~Rl~~l 262 (323)
T PRK13833 233 LKAWNTGHPGGVTTIHSNTAMSALRRLEQL 262 (323)
T ss_pred HHHHcCCCCceEEEECCCCHHHHHHHHHHH
Confidence 88899999 589999999999999877543
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.96 E-value=9.8e-29 Score=210.78 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=117.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC------------------CeEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~------------------~~i~~~~ 158 (254)
+.+++++|++... ++++++.+++|++++|+||||||||||||+|+|+++|..| +++.+++
T Consensus 5 ~~~ls~~y~~~~i--l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 5 VENLSFGYGGKPI--LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred EEEEEEEECCeeE--EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 5689999987654 8999999999999999999999999999999999998633 2344555
Q ss_pred CCCccccC---------CCCCcccccc-----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------GDIPHSAIGT-----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~-----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|.....+. +..|+..+.. .+.+..+||||+|++++|+||+++|++|++
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 54332211 3344433221 144556799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++.+|... +.++. +.|.|+|+++|+.+.+..++++++.
T Consensus 163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~ 211 (258)
T COG1120 163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL 211 (258)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999875 44555 4589999999999999999987754
No 6
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=99.96 E-value=7.3e-28 Score=214.57 Aligned_cols=228 Identities=18% Similarity=0.173 Sum_probs=169.5
Q ss_pred HHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce---eEEe
Q 025371 16 RDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL---HRIS 88 (254)
Q Consensus 16 ~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~---~Rv~ 88 (254)
..+|++++++++|+||++|...++|++..|.. ......+++.++++.+++.++... +..+|.+++++ +|++
T Consensus 12 l~~l~~ll~d~~vtEI~iN~~~~v~v~~~G~~--~~~~~~~~~~~~~~~l~~~ia~~~~~~i~~~~P~l~~~Lp~G~Rv~ 89 (332)
T PRK13900 12 LEPLKNIFAEDGVNEISINKPGEVWVEKKGDI--RCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQ 89 (332)
T ss_pred hhhHHHHhcCCCCEEEEECCCCEEEEEECCcE--EEecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCeEEE
Confidence 35688889999999999998888888776654 233345799999999998886543 34567777766 7999
Q ss_pred EEecCC--CcEEEEEEEECceeecch-----------------------------------hhhhccccCCcEEEEECCC
Q 025371 89 AIRSRK--GAIVGLTCRVGRAVSGHI-----------------------------------DMVYDLLHYGKSILFVGRP 131 (254)
Q Consensus 89 ~~~~~~--g~~~~l~ir~~~~~~~~~-----------------------------------~~l~~~i~~g~~~~i~G~~ 131 (254)
++.+|. +...+++||+.+...-.+ +.+..++..+.+++|+|++
T Consensus 90 ~~~~p~~~~~~~~~~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~t 169 (332)
T PRK13900 90 IVFPPACEIGQIVYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGT 169 (332)
T ss_pred EEcCCcccCCCceEEEECCCCCCCCHHHHHhcCCCCcccccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECCC
Confidence 998873 112478999876532111 2333446678899999999
Q ss_pred CCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCcccccc--ccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 132 GVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 132 GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~--~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
|||||||+++|+..+++ ..+++++|+..|+... .+.+... ..+....+.......++..+|+++||+|+++|.
T Consensus 170 gSGKTTll~aL~~~ip~--~~ri~tiEd~~El~l~---~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~IivGEi 244 (332)
T PRK13900 170 STGKTTFTNAALREIPA--IERLITVEDAREIVLS---NHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIVGEL 244 (332)
T ss_pred CCCHHHHHHHHHhhCCC--CCeEEEecCCCccccc---cCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEEEec
Confidence 99999999999999987 6889999999998531 1222111 111112233446678999999999999999999
Q ss_pred CchHHHHHHHHHHhCCce-EEEEEchhhHHHHhCChhhhhhhc
Q 025371 210 GTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPILSDLVC 251 (254)
Q Consensus 210 ~~~ld~~~~~~~~~~G~~-vi~t~H~~~~~~~~~~~~~~~l~~ 251 (254)
++. ++..+.++.++||. +++|.|++++.+++.|.....+.+
T Consensus 245 R~~-ea~~~l~a~~tGh~G~~tTiHa~s~~~ai~Rl~~~~~~~ 286 (332)
T PRK13900 245 RGA-EAFSFLRAINTGHPGSISTLHADSPAMAIEQLKLMVMQA 286 (332)
T ss_pred CCH-HHHHHHHHHHcCCCcEEEEEecCCHHHHHHHHHHHHHhc
Confidence 997 56678888999995 899999999999997766444433
No 7
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=99.96 E-value=1.4e-27 Score=213.17 Aligned_cols=220 Identities=20% Similarity=0.187 Sum_probs=162.7
Q ss_pred HHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce---eEEeE
Q 025371 17 DRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL---HRISA 89 (254)
Q Consensus 17 ~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~---~Rv~~ 89 (254)
.+|.+++++++|+||++| +|..||+. ..|.+.....+++.++++.++..++... +...|.+++++ +|+++
T Consensus 12 ~~l~~~l~Dp~V~EI~iN--~~~~V~v~-~~g~~~~~~~~l~~~~~~~l~~~~a~~~~~~~~~~~Pil~a~LpdG~Rv~~ 88 (344)
T PRK13851 12 KPVLEWLDDPRTEEVAIN--RPGEAFVR-QAGVFTKFPLPLSYDDLEDIAILAGALRKQDVGPRNPLCATELPGGERLQI 88 (344)
T ss_pred hhHHHHhcCCCCEEEEEC--CCCeEEEE-ECCEEEEcCCCCCHHHHHHHHHHHHHhcCCccccCCcEEEEECCCCeEEEE
Confidence 468888899999999999 55555332 2232222344799999999887776543 34677887776 89999
Q ss_pred EecC---CCcEEEEEEEECceeecch---------------------------------------hhhhccccCCcEEEE
Q 025371 90 IRSR---KGAIVGLTCRVGRAVSGHI---------------------------------------DMVYDLLHYGKSILF 127 (254)
Q Consensus 90 ~~~~---~g~~~~l~ir~~~~~~~~~---------------------------------------~~l~~~i~~g~~~~i 127 (254)
+.+| .| ..+++||+++.....+ ..+..+++.+.+++|
T Consensus 89 v~pP~~~~g-~~sitIRk~~~~~~tl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~nilI 167 (344)
T PRK13851 89 CLPPTVPSG-TVSLTIRRPSSRVSELKEVSSRYDASRWNQWQERRKRRDQLDEAILRHYDNGDLEAFLHACVVGRLTMLL 167 (344)
T ss_pred EecccccCC-ceEEEEEccCCCCCCHHHHHhhhcccccccccccccccchhhhhhhhccccHHHHHHHHHHHHcCCeEEE
Confidence 9987 33 3489999976542111 224445778899999
Q ss_pred ECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccc--cccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 128 VGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA--RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 128 ~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~--~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+||+|||||||+++|++.+++ ..+++++|+..|+.. ++.+.... ..-....++.....++..+|+++||+|+
T Consensus 168 ~G~tGSGKTTll~aLl~~i~~--~~rivtiEd~~El~l----~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 168 CGPTGSGKTTMSKTLISAIPP--QERLITIEDTLELVI----PHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred ECCCCccHHHHHHHHHcccCC--CCCEEEECCCccccC----CCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 999999999999999999987 578999999998853 33322111 1111223455677899999999999999
Q ss_pred EeCCCchHHHHHHHHHHhCCce-EEEEEchhhHHHHhCChhhh
Q 025371 206 VDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 206 lDEp~~~ld~~~~~~~~~~G~~-vi~t~H~~~~~~~~~~~~~~ 247 (254)
++|.++.+ +..+.+++++||. +++|.|++++.+++.|....
T Consensus 242 vGEiR~~e-a~~~l~a~~tGh~G~ltTiHa~s~~~a~~Rl~~l 283 (344)
T PRK13851 242 LGEMRDDA-AWAYLSEVVSGHPGSISTIHGANPVQGFKKLFSL 283 (344)
T ss_pred EEeeCcHH-HHHHHHHHHhCCCcEEECCCCCCHHHHHHHHHHH
Confidence 99999974 6677888899995 99999999999998876644
No 8
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-28 Score=206.25 Aligned_cols=149 Identities=15% Similarity=0.245 Sum_probs=115.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC---------------CeEEEEcCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ---------------KRVVIVDTSN 161 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~---------------~~i~~~~~~~ 161 (254)
+.+++++|... . .++++++.+++|++++|+||||||||||+|+|+|+++|..| .+|.|++|..
T Consensus 7 v~nl~v~y~~~-~-vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~ 84 (254)
T COG1121 7 VENLTVSYGNR-P-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKS 84 (254)
T ss_pred EeeeEEEECCE-e-eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCccc
Confidence 56899999865 3 69999999999999999999999999999999999998643 2455566543
Q ss_pred ccccC-----------CCCCccccc-----------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 162 EIGGD-----------GDIPHSAIG-----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 162 ei~~~-----------~~~~~~~~~-----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
++... +..++..+. ..+++..+||||+||+.+||||+.+|++|+||
T Consensus 85 ~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 85 SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 32211 111111100 12556668999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||+.+.|+.. +.++.++|+||++++|+.+....+.++++.
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~ 211 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVIC 211 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEE
Confidence 9999999875 556667799999999998888877776653
No 9
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=99.96 E-value=4.6e-27 Score=208.28 Aligned_cols=229 Identities=16% Similarity=0.156 Sum_probs=167.9
Q ss_pred HHHHHccHHHHHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEc
Q 025371 6 AFWQILPSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIE 81 (254)
Q Consensus 6 ~~~~~l~~~l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~ 81 (254)
+..+.|-+.+...|++++++++|+||++|....+|+...|. .......++.+++++++++++... +..+|.++
T Consensus 13 ~~~~~~~~~~~~~l~~~l~Dp~v~EI~iN~~~~V~v~~~g~---~~~~~~~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~ 89 (319)
T PRK13894 13 RAKKKLERDMGPELLAALNDPKTVEIMLNADGKLWQERLGE---PMRCIGTLRVAQAQAIIETIAGYHGKEVTRSKPILE 89 (319)
T ss_pred HHHHHHHHHHhHHHHHHhcCCCceEEEEcCCCEEEEEECCc---EEecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEE
Confidence 45555666676668889999999999999444444433333 222234689999999999887553 45677777
Q ss_pred Cce----eEEeEEecC--CCcEEEEEEEECceeecc--------------hhhhhccccCCcEEEEECCCCCCHHHHHHH
Q 025371 82 GTL----HRISAIRSR--KGAIVGLTCRVGRAVSGH--------------IDMVYDLLHYGKSILFVGRPGVGKTTVMRE 141 (254)
Q Consensus 82 ~~~----~Rv~~~~~~--~g~~~~l~ir~~~~~~~~--------------~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~ 141 (254)
+++ +|++++.+| .|. .++||+.+..... .+.+...+..+.+++|+|++|||||||+++
T Consensus 90 ~~lp~~G~Rv~~~~~p~~~g~--~~~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 90 GELPLDGSRFAGQLPPVVPAP--TFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred EEcCCCCEEEEEEcCCcCCCc--EEEEECCCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH
Confidence 654 799998877 344 7999997644311 234555577889999999999999999999
Q ss_pred HHhccCc-CCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHH
Q 025371 142 IARVLSD-EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS 220 (254)
Q Consensus 142 l~g~~~~-~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~ 220 (254)
|++.+.. ....+++++++..|+.. ++.+... +. .+.......++..+|+++||+|+++|.++. ++..+.+
T Consensus 168 L~~~~~~~~~~~rivtIEd~~El~~----~~~~~v~---~~-~~~~~~~~~ll~~aLR~~PD~IivGEiR~~-Ea~~~l~ 238 (319)
T PRK13894 168 IINEMVIQDPTERVFIIEDTGEIQC----AAENYVQ---YH-TSIDVNMTALLKTTLRMRPDRILVGEVRGP-EALDLLM 238 (319)
T ss_pred HHHhhhhcCCCceEEEEcCCCcccc----CCCCEEE---Ee-cCCCCCHHHHHHHHhcCCCCEEEEeccCCH-HHHHHHH
Confidence 9987521 12578999999999853 3333221 11 122345677899999999999999999997 5667788
Q ss_pred HHhCCc-eEEEEEchhhHHHHhCChhhhh
Q 025371 221 IAERGV-MLIGTAHGEWLENIIKNPILSD 248 (254)
Q Consensus 221 ~~~~G~-~vi~t~H~~~~~~~~~~~~~~~ 248 (254)
+.++|| ++++|.|++++.+++.|.....
T Consensus 239 A~~tGh~G~~tTiHa~s~~~ai~Rl~~l~ 267 (319)
T PRK13894 239 AWNTGHEGGAATLHANNAKAGLDRLKSLI 267 (319)
T ss_pred HHHcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 999999 5899999999999998765443
No 10
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=99.95 E-value=2.8e-27 Score=208.30 Aligned_cols=221 Identities=19% Similarity=0.210 Sum_probs=163.6
Q ss_pred HHHHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce----e
Q 025371 14 DLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL----H 85 (254)
Q Consensus 14 ~l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~----~ 85 (254)
.+...|.+++++++|+||.+|....+|++..|.. +.....++++++.++++.++... +..+|.+++++ +
T Consensus 5 ~~~~~l~~~l~d~~v~eI~in~~~~v~v~~~g~~---~~~~~~~s~~~~~~l~~~la~~~g~~~~~~~P~~~~~lp~~g~ 81 (299)
T TIGR02782 5 ALGPEIAAALDDPGVVEIMLNPDGRLWVERLGSG---MSPLGEMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPLDGS 81 (299)
T ss_pred HHhHHHHHHhcCCCceEEEEcCCCeEEEEECCce---EEecCCCCHHHHHHHHHHHHHHhCCeecCCCCEEEEEECCCCE
Confidence 3444577788899999999997777777655542 22233489999999999887553 34567776654 6
Q ss_pred EEeEEecCC--CcEEEEEEEECceeecc--------------hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-
Q 025371 86 RISAIRSRK--GAIVGLTCRVGRAVSGH--------------IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD- 148 (254)
Q Consensus 86 Rv~~~~~~~--g~~~~l~ir~~~~~~~~--------------~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~- 148 (254)
|++++.+|. |. ++++|+.+..... .+.+...+..+.+++|+|++|||||||+++|++.++.
T Consensus 82 R~~~~~~p~~~g~--~i~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~ 159 (299)
T TIGR02782 82 RFEGLIPPVVAAP--SFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKN 159 (299)
T ss_pred EEEEEecCccCCc--EEEEECcCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 999877763 54 8999997543311 2344555777889999999999999999999999864
Q ss_pred CCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCce-
Q 025371 149 EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM- 227 (254)
Q Consensus 149 ~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~- 227 (254)
....+++++|+..|+.. ++.+.... ....+......++..+|+++||+|+++|.++. ++..+.+++++||.
T Consensus 160 ~~~~ri~tiEd~~El~~----~~~~~v~~---~~~~~~~~~~~~l~~aLR~~pD~iivGEiR~~-ea~~~l~a~~tGh~G 231 (299)
T TIGR02782 160 DPTDRVVIIEDTRELQC----AAPNVVQL---RTSDDAISMTRLLKATLRLRPDRIIVGEVRGG-EALDLLKAWNTGHPG 231 (299)
T ss_pred CCCceEEEECCchhhcC----CCCCEEEE---EecCCCCCHHHHHHHHhcCCCCEEEEeccCCH-HHHHHHHHHHcCCCC
Confidence 23678999999999853 23332211 11111115677999999999999999999997 56677888899995
Q ss_pred EEEEEchhhHHHHhCChhhh
Q 025371 228 LIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 228 vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++|.|+.++.+++.|....
T Consensus 232 ~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 232 GIATIHANNAKAALDRLEQL 251 (299)
T ss_pred eEEeeccCCHHHHHHHHHHH
Confidence 89999999999999876543
No 11
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=99.95 E-value=7.6e-27 Score=210.27 Aligned_cols=227 Identities=20% Similarity=0.153 Sum_probs=163.3
Q ss_pred cHHHHHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhccc----------CCCcee---
Q 025371 12 PSDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF----------GGDNRA--- 78 (254)
Q Consensus 12 ~~~l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----------~~~~~~--- 78 (254)
|+.+.+.|. +..+++++||+++.|+|+++|.+|++ .+....+++.+++.+++..+... +.|..+
T Consensus 9 ~~~~~~ll~-~~~~~~~SDI~l~~g~~v~ir~~G~l--~~~~~~~l~~~~~~~~i~~i~~~~~~~~l~~~~~vd~a~~~~ 85 (372)
T TIGR02525 9 ADTLRRFFV-HCSRHEVSDIHLQGGSPIVVERHGRQ--VPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDRAIQLR 85 (372)
T ss_pred HHHHHHHHH-HHhhCCCceEEEcCCCCeEEEECCeE--EECCCCCCCHHHHHHHHHHHhHHHHHHHHhccCCcccceecc
Confidence 456666565 45569999999999999999999886 35666789999999988876432 122222
Q ss_pred -------EEc-C--ceeEEeEEecCCC---cEEEEEEEECceeecch-------hhhhccccCCcEEEEECCCCCCHHHH
Q 025371 79 -------GIE-G--TLHRISAIRSRKG---AIVGLTCRVGRAVSGHI-------DMVYDLLHYGKSILFVGRPGVGKTTV 138 (254)
Q Consensus 79 -------~~~-~--~~~Rv~~~~~~~g---~~~~l~ir~~~~~~~~~-------~~l~~~i~~g~~~~i~G~~GsGKTTL 138 (254)
.++ | .++|+|++....+ ...++++|........+ ..+...+..+..++|+||+||||||+
T Consensus 86 ~~~~g~~~l~~g~~~rfR~n~~~~~~~~~~~~~~i~iR~~~~~~~~l~~lgl~~~~~~~l~~~~GlilI~G~TGSGKTT~ 165 (372)
T TIGR02525 86 GDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTL 165 (372)
T ss_pred cccccceeccCCceEEEEEEEecccccccCCCceEEEEeCCCcCCCHHHcCCCHHHHHHHHhcCCEEEEECCCCCCHHHH
Confidence 232 2 2489998764311 12389999875543222 22223355666899999999999999
Q ss_pred HHHHHhccCcC-CCCeEEEEcCCCccccCCCCCcccc-ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 139 MREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAI-GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 139 l~~l~g~~~~~-~~~~i~~~~~~~ei~~~~~~~~~~~-~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
+++|++.+... ...+++++|++.|+.... .+. ....+.++.........++..+|+++||+|+++|.++..++.
T Consensus 166 l~al~~~i~~~~~~~~IvtiEdp~E~~~~~----~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~vGEiRd~et~~ 241 (372)
T TIGR02525 166 AASIYQHCGETYPDRKIVTYEDPIEYILGS----PDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIGVGEIRDLETFQ 241 (372)
T ss_pred HHHHHHHHHhcCCCceEEEEecCchhccCC----CceeecccccccCCCccCHHHHHHHhhccCCCEEeeCCCCCHHHHH
Confidence 99999988532 257899999999875421 111 001122222233356778999999999999999999998888
Q ss_pred HHHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 217 ACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 217 ~~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
.+.+++++||.+++|.|++++.+++.|..
T Consensus 242 ~al~aa~TGH~v~tTlHa~s~~~ai~Rl~ 270 (372)
T TIGR02525 242 AAVLAGQSGHFCLGTLHVKSPGEAISRCL 270 (372)
T ss_pred HHHHHHhcCCcEEEeeCCCCHHHHHHHHH
Confidence 88899999999999999999999988765
No 12
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.95 E-value=1.2e-26 Score=201.04 Aligned_cols=217 Identities=29% Similarity=0.427 Sum_probs=157.5
Q ss_pred EEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccCCC----ceeEEcCce---eEEeEEecC---CCcEE
Q 025371 29 LEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFGGD----NRAGIEGTL---HRISAIRSR---KGAIV 98 (254)
Q Consensus 29 ~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~~~~~~~~---~Rv~~~~~~---~g~~~ 98 (254)
+||+|+.|+|.++++.+.. .|.....+|.++|+.++..+++++.. ..+....++ +|++++.+| .|.+
T Consensus 1 ~eiri~inrP~~v~~~~~~--~~~~~~~lt~~~l~~l~~~la~~s~~~~~~~~~~~~~tlpgG~Rv~i~~~p~~~~g~v- 77 (270)
T TIGR02858 1 EEIRIRVGRPLELVFDGEE--VFVTDYIPTVEDVNYILQLISNYSLYAFEEELKQGYITIEGGHRVGLAGRCVTENGKV- 77 (270)
T ss_pred CeEEEECCCCCEEEECCCC--EEEecccCCHHHHHHHHHHHHhccccccccccccceEEcCCCcEEEEEccceecCCEE-
Confidence 5999999999999766554 35555559999999999999887532 233333343 899999887 3532
Q ss_pred EEEEEECc--------eeecchhhh-hccccCC--cEEEEECCCCCCHHHHHHHHHhccCcCCC------CeEEEEcCCC
Q 025371 99 GLTCRVGR--------AVSGHIDMV-YDLLHYG--KSILFVGRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSN 161 (254)
Q Consensus 99 ~l~ir~~~--------~~~~~~~~l-~~~i~~g--~~~~i~G~~GsGKTTLl~~l~g~~~~~~~------~~i~~~~~~~ 161 (254)
++||+++ ...+..+.+ ....+.+ .+++|+||||||||||+++|+|++++..+ .++..+++..
T Consensus 78 -~tIR~~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ 156 (270)
T TIGR02858 78 -KTIKNVSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERS 156 (270)
T ss_pred -EEEEcccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHH
Confidence 5555543 223333322 2334445 58999999999999999999999998633 3444444445
Q ss_pred ccccC-CCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHH
Q 025371 162 EIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 162 ei~~~-~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~ 240 (254)
|+... ..+++..++ .+..++.+..+...++..++.++|++|++|||+...+...+.+..++|+++|+|+|+.++.++
T Consensus 157 ei~~~~~~~~q~~~~--~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 157 EIAGCVNGVPQHDVG--IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHhccccccccc--ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHHH
Confidence 55422 234555444 355667777777777777777999999999999988788877777789999999999999999
Q ss_pred hCChhhhhhhc
Q 025371 241 IKNPILSDLVC 251 (254)
Q Consensus 241 ~~~~~~~~l~~ 251 (254)
+.|+.+..|+.
T Consensus 235 ~~r~~~~~l~~ 245 (270)
T TIGR02858 235 YKRPVFKELIE 245 (270)
T ss_pred HhChHHHHHHh
Confidence 99999888764
No 13
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=99.95 E-value=3.2e-27 Score=206.31 Aligned_cols=219 Identities=16% Similarity=0.166 Sum_probs=171.0
Q ss_pred HHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhccc----CCCceeEEcCce---eEEeEE
Q 025371 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF----GGDNRAGIEGTL---HRISAI 90 (254)
Q Consensus 18 ~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~---~Rv~~~ 90 (254)
+|++++++++++||++|....+|++. ..+..+.....+++.++.+++++++.. -++.+|.+++.+ +|+|+.
T Consensus 49 ~Le~ll~dd~i~dImVn~~~~v~v~~--~~~~~~t~irf~d~~~l~~ii~ria~~vgrriD~~~P~~darLpdGsRvna~ 126 (355)
T COG4962 49 PLEPLLADDDIEDIMVNGPGRVFVER--KGGLEPTDIRFLDEAALLRIIQRIAAAVGRRIDESQPIVDARLPDGSRLNAN 126 (355)
T ss_pred cchhhhcCCCceeEEecCCCcEEEEe--cCccccCCcccCCHHHHHHHHHHHHHHhCCccccCCceeeeeCCCCceEEee
Confidence 57778889999999999666677743 222223333578999999998877543 467788888876 899999
Q ss_pred ecC---CCcEEEEEEEECceee--------------cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe
Q 025371 91 RSR---KGAIVGLTCRVGRAVS--------------GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR 153 (254)
Q Consensus 91 ~~~---~g~~~~l~ir~~~~~~--------------~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~ 153 (254)
.+| .|+ .+++|+.++.+ ...+.++..+....+++|.|.+|||||||||+|++++++ .++
T Consensus 127 ~pPva~dGp--~lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--~eR 202 (355)
T COG4962 127 SPPVAIDGP--TLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--DER 202 (355)
T ss_pred cCccccCCC--cccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--ccc
Confidence 998 466 89999987654 234556666777789999999999999999999999998 569
Q ss_pred EEEEcCCCccccCCCCCccccccc--cccCC-CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCc-eEE
Q 025371 154 VVIVDTSNEIGGDGDIPHSAIGTA--RRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGV-MLI 229 (254)
Q Consensus 154 i~~~~~~~ei~~~~~~~~~~~~~~--~~~~~-~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~-~vi 229 (254)
++++++..|+. .+|+.+... +...+ ..+...++.++..+|+++||.|+++|.+.. ++..+++++++|| +.+
T Consensus 203 vItiEDtaELq----l~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVGEVRG~-Ea~dLL~AmnTGHdG~~ 277 (355)
T COG4962 203 VITIEDTAELQ----LAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVGEVRGV-EALDLLQAMNTGHDGGM 277 (355)
T ss_pred EEEEeehhhhc----cCCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEEEecCc-cHHHHHHHhccCCCCcc
Confidence 99999999984 445443221 11111 234557888999999999999999999997 8889999999999 679
Q ss_pred EEEchhhHHHHhCChhhh
Q 025371 230 GTAHGEWLENIIKNPILS 247 (254)
Q Consensus 230 ~t~H~~~~~~~~~~~~~~ 247 (254)
.|.|+++..+++.|....
T Consensus 278 ~TlHans~~ea~~rle~l 295 (355)
T COG4962 278 GTLHANSPREALTRLEQL 295 (355)
T ss_pred eeeccCCHHHHHHHHHHH
Confidence 999999999998776543
No 14
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=99.95 E-value=2e-26 Score=206.00 Aligned_cols=222 Identities=16% Similarity=0.167 Sum_probs=164.2
Q ss_pred HHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce---eEEeEE
Q 025371 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL---HRISAI 90 (254)
Q Consensus 18 ~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~---~Rv~~~ 90 (254)
+|++++++++|+||++|....+|++..+ +.........+++++.+++++++... +..+|.+++++ +|++++
T Consensus 54 ~L~~ll~d~~VtdI~vng~~~v~v~~~~--~~~~~~~~f~~~~~~~~l~~~la~~~g~~l~~~~P~~d~~l~~g~Rv~~~ 131 (340)
T TIGR03819 54 PLEPLLADPGVTDVLVNGPDEVWVDRGE--GLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDGRLPDGTRLHAV 131 (340)
T ss_pred chHHHHhCCCCEEEEEcCCCEEEEEECC--eEEEcCCCcCCHHHHHHHHHHHHHHcCCcccCCCCeeEeECCCCEEEEEE
Confidence 3667888999999999977777765322 21233345678999999999886543 34467787765 899999
Q ss_pred ecC---CCcEEEEEEEECceeecc--------------hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe
Q 025371 91 RSR---KGAIVGLTCRVGRAVSGH--------------IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR 153 (254)
Q Consensus 91 ~~~---~g~~~~l~ir~~~~~~~~--------------~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~ 153 (254)
.+| .|. .++||+.+..... .+.+..+++.+.+++|+|++|||||||++++++++++ ..+
T Consensus 132 ~~pvs~~g~--~i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~--~~r 207 (340)
T TIGR03819 132 LPPVATDGT--CLSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAP--DER 207 (340)
T ss_pred ecCccCCCc--EEEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCC--CCc
Confidence 886 354 7999987644321 2334455778889999999999999999999999987 567
Q ss_pred EEEEcCCCccccCCCCCcccccccc-ccC--CCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCce-EE
Q 025371 154 VVIVDTSNEIGGDGDIPHSAIGTAR-RMQ--VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LI 229 (254)
Q Consensus 154 i~~~~~~~ei~~~~~~~~~~~~~~~-~~~--~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~-vi 229 (254)
++++++..|+.. .+.++.... +.. ..+++.....++..+|+++||+|+++|.++. ++..+.++.++||. ++
T Consensus 208 iv~iEd~~El~~----~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~IivGEiRg~-Ea~~~l~a~~tGh~G~~ 282 (340)
T TIGR03819 208 IVLVEDAAELRP----DHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGA-EVVDLLAALNTGHDGGA 282 (340)
T ss_pred EEEECCcceecC----CCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEEEeCcCcH-HHHHHHHHHHcCCCceE
Confidence 899999999853 222221111 111 1124556788999999999999999999997 56677888899995 89
Q ss_pred EEEchhhHHHHhCChhhhhhh
Q 025371 230 GTAHGEWLENIIKNPILSDLV 250 (254)
Q Consensus 230 ~t~H~~~~~~~~~~~~~~~l~ 250 (254)
+|.|++++.+++.|.....+.
T Consensus 283 tTiHA~s~~~~~~RL~~l~~~ 303 (340)
T TIGR03819 283 GTLHANSPADVPARLEALGAL 303 (340)
T ss_pred EeeCCCCHHHHHHHHHHHhhc
Confidence 999999999999887644333
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.4e-27 Score=197.17 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=107.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----CccccC----C
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----NEIGGD----G 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----~ei~~~----~ 167 (254)
+.++++.|+.. ..++++++.+.+||+++|+||+|||||||||+|+|+..|+.|. |....+. ..+.+. .
T Consensus 6 i~~v~~~f~~~--~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~-V~~~g~~v~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 6 IEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE-VLLDGRPVTGPGPDIGYVFQEDA 82 (248)
T ss_pred EEeeEEEeCce--EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCcccCCCCCCEEEEeccCc
Confidence 45777777763 3589999999999999999999999999999999999997443 2221111 111110 0
Q ss_pred CCCcccc---------------------------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 168 DIPHSAI---------------------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 168 ~~~~~~~---------------------------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
.+|...+ ...+....+||||+||++|||||..+|++|+||||++.+|
T Consensus 83 LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 83 LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 1111100 0012223469999999999999999999999999999999
Q ss_pred HHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 215 AHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 215 ~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.+ +.+++ ++++|++++||+.+-+-.+.++++.
T Consensus 163 alTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv 203 (248)
T COG1116 163 ALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203 (248)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence 876 44444 4589999999998777777776643
No 16
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.95 E-value=3.2e-26 Score=202.82 Aligned_cols=216 Identities=17% Similarity=0.206 Sum_probs=157.2
Q ss_pred CCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce---eEEeEEecCC
Q 025371 22 DSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL---HRISAIRSRK 94 (254)
Q Consensus 22 ~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~---~Rv~~~~~~~ 94 (254)
++++++|+||.+|.+.++|++..|+. .......++++++.++++.++... +..+|.+++++ +|++++.+|.
T Consensus 1 ~l~d~~v~eI~in~~~~v~v~~~g~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~l~~g~Rv~~~~~p~ 78 (308)
T TIGR02788 1 FLDDEDVTEICINRPGEVWVEGPGGW--QRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPA 78 (308)
T ss_pred CCCCCCcEEEEEcCCCEEEEEECCcE--EEecCccCCHHHHHHHHHHHHHHhCCcccCCCceEEEECCCCeEEEEECCCc
Confidence 46789999999998888888766654 233345799999999999887553 23456776665 8999999873
Q ss_pred ---CcEEEEEEEECceeecc------------------------------------hhhhhccccCCcEEEEECCCCCCH
Q 025371 95 ---GAIVGLTCRVGRAVSGH------------------------------------IDMVYDLLHYGKSILFVGRPGVGK 135 (254)
Q Consensus 95 ---g~~~~l~ir~~~~~~~~------------------------------------~~~l~~~i~~g~~~~i~G~~GsGK 135 (254)
+ ..++++|+.....-. .+.++..++.|++++|+|||||||
T Consensus 79 ~~~~-~~~i~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGK 157 (308)
T TIGR02788 79 CEND-TVSITIRKPSLVDFSLDDYEEKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGK 157 (308)
T ss_pred ccCC-CceEEEECCCCCCCCHHHHHHcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCH
Confidence 3 238899986643211 123445577899999999999999
Q ss_pred HHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCcccccc--ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 136 TTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 136 TTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~--~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
|||+++|++++++ ..+++++++..|+... +.+... ................++.+|+++||+|++|||++.
T Consensus 158 TTll~al~~~~~~--~~~iv~ied~~El~~~----~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~- 230 (308)
T TIGR02788 158 TTFLKSLVDEIPK--DERIITIEDTREIFLP----HPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGD- 230 (308)
T ss_pred HHHHHHHHccCCc--cccEEEEcCccccCCC----CCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCCH-
Confidence 9999999999987 4578888988887532 111110 011111123345677889999999999999999996
Q ss_pred HHHHHHHHHhCCce-EEEEEchhhHHHHhCChhhh
Q 025371 214 EAHACRSIAERGVM-LIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 214 d~~~~~~~~~~G~~-vi~t~H~~~~~~~~~~~~~~ 247 (254)
+...+.+..++||. +++|+|+.++.++++|....
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l 265 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALM 265 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHH
Confidence 55666777779984 69999999999987766544
No 17
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=99.94 E-value=5.9e-25 Score=197.67 Aligned_cols=227 Identities=18% Similarity=0.185 Sum_probs=159.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhc----------ccCCCceeEEc-
Q 025371 13 SDLRDRLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG----------EFGGDNRAGIE- 81 (254)
Q Consensus 13 ~~l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----------~~~~~~~~~~~- 81 (254)
..+...|. +....+++||||+++.++++|++|.+ ..+...+++.++++.++..+. ..+.+..+.+.
T Consensus 4 ~~~~~ll~-~a~~~~aSDIhi~~~~~i~~ri~G~l--~~~~~~~l~~~~~~~li~~l~~~~~~~~~~~~~di~~~~~~~~ 80 (358)
T TIGR02524 4 KFIDDLLE-HAERLGASDITIQTGEAIFAEVYGRL--LKITNRELSNAELGDLINAIYGPNATTQILRGEDIDTHYEFRP 80 (358)
T ss_pred HHHHHHHH-HHHHCCCcEEEEECCCceEEEECCEE--EEecCCCCCHHHHHHHHHHHhhHHHHHHHHhCCCccccccccc
Confidence 33444343 34468999999999999999999987 355567799999998887652 22233333221
Q ss_pred --C-c-eeEEeEEecC----CCcEEEEEEEECceeecchhh------hh-ccccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 82 --G-T-LHRISAIRSR----KGAIVGLTCRVGRAVSGHIDM------VY-DLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 82 --~-~-~~Rv~~~~~~----~g~~~~l~ir~~~~~~~~~~~------l~-~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
+ . .+|++.+... .|. ++++|........++. +. ....++..++|+|||||||||+|++|++.+
T Consensus 81 ~~~~~~~~Rv~~~~~~~~~~~g~--~~vlR~l~~~~~~l~~l~~~~~~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 81 NRGERFRYRINATACHVDGHDAI--QITIRAIPAEPPKLSKLDLPAAIIDAIAPQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCCCeEEEEEEeEecccCCCCce--EEEEEecCCCCCCHHHcCCCHHHHHHHhccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 2 3899987632 243 8999986654322222 22 223478899999999999999999999998
Q ss_pred CcC--CCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhC
Q 025371 147 SDE--FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAER 224 (254)
Q Consensus 147 ~~~--~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~ 224 (254)
.+. .+.++++++++.|+..... ... .....+..+.........++..+|+++||+|+++|.++.+.+..+.+++++
T Consensus 159 ~~~~~~~~~Ivt~EdpiE~~~~~~-~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~t 236 (358)
T TIGR02524 159 AEAPDSHRKILTYEAPIEFVYDEI-ETI-SASVCQSEIPRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAALT 236 (358)
T ss_pred hhcCCCCcEEEEeCCCceEecccc-ccc-cceeeeeeccccccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHHc
Confidence 543 2568999999988743211 000 001112222223345677888999999999999999999888888999999
Q ss_pred CceEEEEEchhhHHHHhCChhh
Q 025371 225 GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 225 G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||.+++|.|++++.+++.|.+-
T Consensus 237 Gh~v~tTlHa~~~~~~i~Rl~~ 258 (358)
T TIGR02524 237 GHPVYTTLHSSGVAETIRRLVG 258 (358)
T ss_pred CCcEEEeeccCCHHHHHHHHHH
Confidence 9999999999999999876543
No 18
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=99.93 E-value=2.4e-25 Score=193.68 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=152.2
Q ss_pred HHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce----eEEeE
Q 025371 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL----HRISA 89 (254)
Q Consensus 18 ~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~----~Rv~~ 89 (254)
+|++++++++++||++|.+..+++...|+. .+....+++.+++..+++.++... ...++.+++.+ .|+++
T Consensus 3 ~l~~~l~d~~~sdI~i~~~~~v~v~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~R~~i 80 (270)
T PF00437_consen 3 PLEPLLDDPEVSDIHINGPDEVWVKRIGGW--VRSPVRFLSEEELERLIRRLASAAGREINERNPIQDGELPGDGIRVRI 80 (270)
T ss_dssp HHHHHHHHTTECEEEEESTTEEEEEETTEE--EEEESTTCGHHHHHHHHHHHHHHTTHHHHCCSSEEEEEECTTSEEEEE
T ss_pred hhhHhhCCCCCEEEEEECCCeEEEEEcCcE--EEEeCCCCCHHHHHHHHHHHHHHhhhhHHhhCcceeeEEeeCCeEEEE
Confidence 566777789999999998888766434331 345567889999999998886443 22344444333 78888
Q ss_pred EecCCCcEEEEEEEECceeec--------------chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE
Q 025371 90 IRSRKGAIVGLTCRVGRAVSG--------------HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (254)
Q Consensus 90 ~~~~~g~~~~l~ir~~~~~~~--------------~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~ 155 (254)
..+|...-..+++|+.....- ..+.+...++.+.+++|+|++||||||++++++..+++. ..+++
T Consensus 81 ~~~p~~~~~~~~iR~~~~~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv 159 (270)
T PF00437_consen 81 TTPPVSGGPTIVIRKFSSKPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIV 159 (270)
T ss_dssp EETTTSTSEEEEEEEETSS--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEE
T ss_pred EEcCCcCCcccceeccccccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceE
Confidence 887732125899996443221 123344446678899999999999999999999999885 58999
Q ss_pred EEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceE-EEEEch
Q 025371 156 IVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVML-IGTAHG 234 (254)
Q Consensus 156 ~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~v-i~t~H~ 234 (254)
+++++.|+.. ++.+....... .....+..++..+|+++||+|+++|.++...... .+++++||.+ ++|.|+
T Consensus 160 ~iEd~~E~~l----~~~~~~~~~~~---~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 160 TIEDPPELRL----PGPNQIQIQTR---RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLHA 231 (270)
T ss_dssp EEESSS-S------SCSSEEEEEEE---TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE-
T ss_pred Eeccccceee----cccceEEEEee---cCcccHHHHHHHHhcCCCCcccccccCCHhHHHH-HHhhccCCceeeeeeec
Confidence 9999999854 33322111111 3455677889999999999999999999866655 8889999988 999999
Q ss_pred hhHHHHhCChh
Q 025371 235 EWLENIIKNPI 245 (254)
Q Consensus 235 ~~~~~~~~~~~ 245 (254)
.++.+++.|..
T Consensus 232 ~s~~~~i~Rl~ 242 (270)
T PF00437_consen 232 NSAEDAIERLA 242 (270)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999987654
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.2e-25 Score=188.28 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=103.8
Q ss_pred EEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------------CC
Q 025371 98 VGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------SN 161 (254)
Q Consensus 98 ~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------------~~ 161 (254)
.+++..|... ....++.+++.+++||+++|+||+||||||||++|.++..|+.+ .+.+... ..
T Consensus 5 ~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G-~v~i~g~d~~~l~~~~~~~~R~~ 83 (226)
T COG1136 5 KNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG-EVLINGKDLTKLSEKELAKLRRK 83 (226)
T ss_pred eeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEcCcCCHHHHHHHHHH
Confidence 3555555322 23468889999999999999999999999999999999999743 3322210 01
Q ss_pred ccccC----CCCCcccc-----------------------------cc----c-cccCCCChhHHHHHHHHHHHccCCCE
Q 025371 162 EIGGD----GDIPHSAI-----------------------------GT----A-RRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 162 ei~~~----~~~~~~~~-----------------------------~~----~-~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
.+++. ..+|.... +. . +....+||||+||+++|||+..+|++
T Consensus 84 ~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i 163 (226)
T COG1136 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI 163 (226)
T ss_pred hEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe
Confidence 11110 00111100 00 0 22345799999999999999999999
Q ss_pred EEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|+.||||+++|... +.++. +.|.|+|++||+..++..++|.+
T Consensus 164 ilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i 213 (226)
T COG1136 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213 (226)
T ss_pred EEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE
Confidence 99999999999876 33443 44899999999999998776653
No 20
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.93 E-value=2.3e-24 Score=193.63 Aligned_cols=212 Identities=17% Similarity=0.247 Sum_probs=154.5
Q ss_pred CCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC------CCc----eeEEcC-ceeEEeEEecC
Q 025371 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG------GDN----RAGIEG-TLHRISAIRSR 93 (254)
Q Consensus 25 ~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~------~~~----~~~~~~-~~~Rv~~~~~~ 93 (254)
..+++||++..+.++.+|.+|.+ ......+++.+++..++..+.... .+. ++.+++ ..+|++.+...
T Consensus 11 ~~~aSDIhi~~~~~v~~R~~G~l--~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~r~R~~~~~~~ 88 (343)
T TIGR01420 11 KNGASDIHLTAGSPPAMRIDGDL--VRIEFEPLTPEDTQKLLREILSEKQREEFEENGELDFSYSLPGVSRFRVNAFKQR 88 (343)
T ss_pred HCCCcEEEEECCCeEEEEECCEE--EEcCCCCCCHHHHHHHHHHHhHHHHHhhhcccCcEEEEEEcCCCcEEEEEEeecC
Confidence 47999999999999999998876 355567899999999887764321 111 222333 34899998876
Q ss_pred CCcEEEEEEEECceeecch------hhhhcc-ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC
Q 025371 94 KGAIVGLTCRVGRAVSGHI------DMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD 166 (254)
Q Consensus 94 ~g~~~~l~ir~~~~~~~~~------~~l~~~-i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~ 166 (254)
.|. ++++|........+ ..+... ..++.+++|+|||||||||+++++++.++...++++++++++.|+...
T Consensus 89 ~g~--~~viR~~~~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~ 166 (343)
T TIGR01420 89 GGV--ALVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR 166 (343)
T ss_pred CCe--EEEEEcCCCCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc
Confidence 665 88888865432222 222222 346789999999999999999999998875546789999998886421
Q ss_pred CCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 167 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
... ....+.+..........+++++|+++||+|++||+++......+.+++++||++++|.|++++..++.|..
T Consensus 167 ----~~~-~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 167 ----NKR-SLINQREVGLDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred ----Ccc-ceEEccccCCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHHHHHHH
Confidence 110 00112222223345677899999999999999999998777777888899999999999999998886654
No 21
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=188.74 Aligned_cols=146 Identities=20% Similarity=0.270 Sum_probs=109.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC----------CCccccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----------SNEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~----------~~ei~~~ 166 (254)
..+++++|.... ..+++++.++.|++++++||+||||||+||+|.+++.|+.|. |.+.+. +..++|.
T Consensus 4 ~~nvsk~y~~~~--av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~-I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKK--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE-ILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCce--eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce-EEECCeecccCCHHHHHHhhhhh
Confidence 458888888554 488999999999999999999999999999999999998543 333221 1122222
Q ss_pred ----CCCCcccccc-----------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 167 ----GDIPHSAIGT-----------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 167 ----~~~~~~~~~~-----------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+.+||..+.. .+....+||||+||+.++|||+.+|++|+||
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 3456653311 0222345999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChh
Q 025371 208 EIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
||++++|+-. +.++. +.|+|++++||+.+.+-.+.+++
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri 206 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI 206 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE
Confidence 9999999876 33332 45999999999977666666554
No 22
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=198.65 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=109.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCcccc---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGG--- 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~--- 165 (254)
+.+++++|+... .+++++..+++||++.++|||||||||+||+|+|+..|+.| +|.+-.. .+.+..
T Consensus 8 i~~v~k~yg~~~--av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFT--AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCee--EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhcccceeec
Confidence 457888887443 48899999999999999999999999999999999999844 4433211 111111
Q ss_pred -CCCCCcccccc----------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 166 -DGDIPHSAIGT----------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 166 -~~~~~~~~~~~----------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
...+||.++.. .++...+||||+||+++||||..+|++|+||||.
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 12445554321 0222335999999999999999999999999999
Q ss_pred chHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+++|... +.++. +.|+|.|++||+.+-+-.+++++.
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~ 208 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIA 208 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceE
Confidence 9999876 33332 459999999999777777766653
No 23
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.7e-25 Score=184.88 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=108.1
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----------Ccc
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----------~ei 163 (254)
+.++++.|.... ...++.+++.+.+|++++|+|++|||||||+++|+|+.+|+.| .|.+-... ..+
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G-~I~~~G~~~~~~~~~~~~~~~V 84 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG-SILLDGKPLAPKKRAKAFYRPV 84 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc-eEEECCcccCccccchhhccce
Confidence 456777775543 2358899999999999999999999999999999999998744 33322210 001
Q ss_pred ccC------CCCCcccccc--------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 164 GGD------GDIPHSAIGT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 164 ~~~------~~~~~~~~~~--------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
... ...|...+.. .+....+||||+||+++||||..+|++||
T Consensus 85 QmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLI 164 (252)
T COG1124 85 QMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLI 164 (252)
T ss_pred eEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEE
Confidence 000 0111111100 12223469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 206 VDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|||++++|+.. +.++. +.|.|.|+++|+..+.+.++++++-
T Consensus 165 lDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 165 LDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred ecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence 999999999865 33444 3478999999999999999888654
No 24
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.4e-25 Score=196.78 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=110.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCcccc---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGG--- 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~--- 165 (254)
+.+++++|+... .++.+++.++.|++++|+||||||||||||+|+|+..++.| .|.+-+. .+.+++
T Consensus 6 l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 6 LKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhHCCEEEEeC
Confidence 457788877653 47889999999999999999999999999999999999843 3333211 112221
Q ss_pred -CCCCCcccccc---------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 166 -DGDIPHSAIGT---------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 166 -~~~~~~~~~~~---------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+||+.+.. .++...+||||+||++++||+..+|+++++|||.+
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 13456653311 13334569999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+.. +.++.+ .|.|+|++||+...+..+.+++.
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~ 205 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV 205 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE
Confidence 999876 334333 48999999999877777777654
No 25
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=182.93 Aligned_cols=147 Identities=23% Similarity=0.291 Sum_probs=109.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC------C----CccccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT------S----NEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~------~----~ei~~~ 166 (254)
+.+++.+|++.+ ....++++.++.|++++|.||||+||||+||.|+.++.|+.|. ++++. + ..++..
T Consensus 4 v~~l~K~y~~~v-~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~--v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 4 VTDLTKSYGSKV-QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGK--VTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred eeehhhhccCHH-hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCce--EEEeecccccChHHHhhhccee
Confidence 457788887743 4688999999999999999999999999999999999998554 22221 1 111100
Q ss_pred ----CCCCcc----cc---c--------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 167 ----GDIPHS----AI---G--------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 167 ----~~~~~~----~~---~--------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+.+... ++ + ..+++.-+|.|++|++.+|||+.++|+++++|||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 000000 00 0 0144555699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|..+ +.++.+.|.++|+++|..+-.++++++++
T Consensus 161 ~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi 204 (245)
T COG4555 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204 (245)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE
Confidence 99999876 45566779999999999777776666654
No 26
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=4e-25 Score=178.63 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=104.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCC--CCCcccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG--DIPHSAI 174 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~--~~~~~~~ 174 (254)
+.+++++|.... .++.+++.+++|++++|+||||||||||+++|+|+++|+. +.+.+ +.. .+.... ......+
T Consensus 3 ~~~l~~~~~~~~--vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~-G~v~~-~g~-~~~~~~~~~~~~~~i 77 (163)
T cd03216 3 LRGITKRFGGVK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-GEILV-DGK-EVSFASPRDARRAGI 77 (163)
T ss_pred EEEEEEEECCeE--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEE-CCE-ECCcCCHHHHHhcCe
Confidence 457888886543 5888899999999999999999999999999999999873 44433 221 111000 0000111
Q ss_pred ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 175 GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 175 ~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+. ...+|+|++||+++++++..+|++|++|||++++|... +.++.+.|.++|+++|+.+....+.++++.
T Consensus 78 ~~---~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~ 154 (163)
T cd03216 78 AM---VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTV 154 (163)
T ss_pred EE---EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 11 11289999999999999999999999999999999876 334445688999999998766665555543
No 27
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.92 E-value=2.8e-24 Score=190.24 Aligned_cols=219 Identities=17% Similarity=0.215 Sum_probs=169.2
Q ss_pred HHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce---eEEeEE
Q 025371 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL---HRISAI 90 (254)
Q Consensus 18 ~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~---~Rv~~~ 90 (254)
.|.+++.++.++||++|.-.|+++. +...+........++.+++..++.++++.. +..+|.+.+++ +|++++
T Consensus 17 ~l~p~l~D~~iedI~~n~~~~v~v~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~~~~lp~g~Ri~i~ 95 (312)
T COG0630 17 KLEPLLRDPRIEDIVVNGPGPVYVE-HKGGGSYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPILDATLPDGSRIQIV 95 (312)
T ss_pred ccchhhcCCCceEEEecCCceEEEE-EcCCcceeccCccCCHHHHHHHHHHHHHHcCCCCCCCCCceEeEcCCCcEEEEE
Confidence 3667888999999999955556553 332221122356788999999988887653 45567777665 899999
Q ss_pred ecC----CCcEEEEEEEECceeec--------------chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC
Q 025371 91 RSR----KGAIVGLTCRVGRAVSG--------------HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK 152 (254)
Q Consensus 91 ~~~----~g~~~~l~ir~~~~~~~--------------~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~ 152 (254)
.++ .|. ++++|+.+..+- ....++..++.++.++++|++||||||+|++++.++++ ..
T Consensus 96 ~~~~v~~~~~--s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~--~~ 171 (312)
T COG0630 96 LGPEVSPNGS--SFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPP--EE 171 (312)
T ss_pred eCCCcCCCCC--cEEEEcCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCc--hh
Confidence 987 343 799999775431 23456777999999999999999999999999999998 68
Q ss_pred eEEEEcCCCccccCCCCCcccccccc--ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEE
Q 025371 153 RVVIVDTSNEIGGDGDIPHSAIGTAR--RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIG 230 (254)
Q Consensus 153 ~i~~~~~~~ei~~~~~~~~~~~~~~~--~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~ 230 (254)
+++++++..|+. .+|.++.... .....++......++..||+++||+||+||.++. ++..+.++.++||..++
T Consensus 172 rivtIEdt~E~~----~~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEvrg~-e~~~~~~a~~tGh~~is 246 (312)
T COG0630 172 RIVTIEDTPELK----LPHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGELRGR-EAFVLFQAMQTGHGTIS 246 (312)
T ss_pred cEEEEecccccc----CCCCCEEEEEecCCCCCccccCHHHHHHHHHhcCCCeEEEeeeecH-HHHHHHHHHhcCCCcee
Confidence 899999999984 5566653221 1111135567889999999999999999999997 67788888999999999
Q ss_pred EEchhhHHHHhCChhh
Q 025371 231 TAHGEWLENIIKNPIL 246 (254)
Q Consensus 231 t~H~~~~~~~~~~~~~ 246 (254)
|.|+.+...+++|...
T Consensus 247 T~ha~s~~~~~~rl~~ 262 (312)
T COG0630 247 TIHADSPELVLDRLTE 262 (312)
T ss_pred EEecCCHHHHHHHHhh
Confidence 9999999998877654
No 28
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.92 E-value=4.2e-25 Score=177.98 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=110.6
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC------CCccccC-----
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT------SNEIGGD----- 166 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~------~~ei~~~----- 166 (254)
.+++++|+.. ...++++++.+++|+++.|+||+|||||||+|.|.+...|+.|. +.+.+. ..++++.
T Consensus 5 ~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~-i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 5 ENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK-ILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCce-EEECCeecccccccccchhhheee
Confidence 4778888776 45799999999999999999999999999999999999998443 332221 1112110
Q ss_pred ------CCCCcccccc---------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 167 ------GDIPHSAIGT---------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 167 ------~~~~~~~~~~---------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
..+++..+.. ..-...+|+|+|||++||||+..+|++||.|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 0011111000 0111235999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||++++|+.. +.++...|.||++.||+.++.+.+..+++.
T Consensus 163 EPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~ 209 (223)
T COG2884 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA 209 (223)
T ss_pred CCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEE
Confidence 9999999876 444456799999999999999999887765
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3.6e-25 Score=184.45 Aligned_cols=148 Identities=17% Similarity=0.215 Sum_probs=105.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc-----------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----------- 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~----------- 165 (254)
+.+++++++.... ++.+++.+++|++++|+||+|||||||||.|.|++.|+.|+-.+.-.+...+..
T Consensus 11 vr~v~~~fG~~~I--ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 11 VRGVTKSFGDRVI--LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred EeeeeeecCCEEE--ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhee
Confidence 5678888887765 899999999999999999999999999999999999985542222111111000
Q ss_pred -----CCCCCc----cccc-c------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 166 -----DGDIPH----SAIG-T------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 166 -----~~~~~~----~~~~-~------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
...+.. .|+. . ..-...+||||++|+++|||++.+|++|+
T Consensus 89 vlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~ 168 (263)
T COG1127 89 VLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF 168 (263)
T ss_pred EEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE
Confidence 000000 0000 0 00112349999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|+.+ +.++.++ |.|++++||+.+-...++++++
T Consensus 169 ~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 169 LDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred ecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEE
Confidence 999999999865 4444444 8999999999766666666554
No 30
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.6e-24 Score=176.59 Aligned_cols=145 Identities=17% Similarity=0.276 Sum_probs=104.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---------CccccCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGDG 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------~ei~~~~ 167 (254)
+.++++++... ..++.+++.+.+|+.++|+||||||||||+++|+|+++|..| .+.+.... ..+.+
T Consensus 3 ~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~-- 77 (173)
T cd03230 3 VRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVKRRIGY-- 77 (173)
T ss_pred EEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhhccEEE--
Confidence 45788887653 258899999999999999999999999999999999988633 33321110 01111
Q ss_pred CCCccc-ccc-ccccC--CCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhh
Q 025371 168 DIPHSA-IGT-ARRMQ--VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 168 ~~~~~~-~~~-~~~~~--~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~ 236 (254)
+++.. ... ..-.+ .+|+|++||+++++++..+|+++++|||++++|... +.++.++|.++|+++|+.+
T Consensus 78 -~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 78 -LPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred -EecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 11110 000 00001 189999999999999999999999999999999876 4445556889999999988
Q ss_pred HHHHhCChhhh
Q 025371 237 LENIIKNPILS 247 (254)
Q Consensus 237 ~~~~~~~~~~~ 247 (254)
....+.++++.
T Consensus 157 ~~~~~~d~i~~ 167 (173)
T cd03230 157 EAERLCDRVAI 167 (173)
T ss_pred HHHHhCCEEEE
Confidence 77766665543
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.92 E-value=1.6e-24 Score=182.53 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=105.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-------------Ccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------NEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-------------~ei 163 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+-+.. ..+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i 82 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREIPFLRRHI 82 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHHHHHHHhc
Confidence 4578888853211257889999999999999999999999999999999988633 33221100 001
Q ss_pred ccCC----CCCcccc-----------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 164 GGDG----DIPHSAI-----------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 164 ~~~~----~~~~~~~-----------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
.+.. .++...+ + ..+....+|+||+||+++++|+..+|++||+
T Consensus 83 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (216)
T TIGR00960 83 GMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLA 162 (216)
T ss_pred eEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1100 0000000 0 0122334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~ 210 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLT 210 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999876 444445688999999998877766665543
No 32
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.92 E-value=2.9e-24 Score=170.19 Aligned_cols=132 Identities=18% Similarity=0.268 Sum_probs=102.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCcccccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT 176 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~ 176 (254)
+.++++++.... .++.+++.+++|++++|+||||||||||+++|+|+++++.| .+ +++....+.+ +
T Consensus 3 ~~~l~~~~~~~~--~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i-~~~~~~~i~~---~------- 68 (144)
T cd03221 3 LENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IV-TWGSTVKIGY---F------- 68 (144)
T ss_pred EEEEEEEECCce--EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EE-EECCeEEEEE---E-------
Confidence 457888876532 57888899999999999999999999999999999988633 33 3333222221 1
Q ss_pred ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH----HhCCceEEEEEchhhHHHHhCChhh
Q 025371 177 ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 177 ~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~----~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|+|++||+++++++..+|+++++|||++++|......+ .+.+.++++++|+.+....++++++
T Consensus 69 ----~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~ 138 (144)
T cd03221 69 ----EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKII 138 (144)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 11899999999999999999999999999999998762222 2336799999999887777666654
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.92 E-value=2.9e-24 Score=190.16 Aligned_cols=148 Identities=20% Similarity=0.285 Sum_probs=107.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------eEEEEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----------------~i~~~~~ 159 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+
T Consensus 10 i~~l~k~~~~~~--~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 10 FRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred EEeEEEEECCeE--EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 568899887543 588999999999999999999999999999999999987432 1222222
Q ss_pred CCccccC----------CC---CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGD----------GD---IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~----------~~---~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+... .. .+... . + ..+....+|+||+||+++++|+.++|++||+|||++
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 2111100 00 00000 0 0 012334569999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+.+ +.++.+.|.|+|+++|..+..+.++++++
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~ 209 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC 209 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 999986 44555569999999999887777666654
No 34
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.91 E-value=3.8e-24 Score=174.43 Aligned_cols=145 Identities=18% Similarity=0.240 Sum_probs=103.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC----------CccccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------NEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~----------~ei~~~ 166 (254)
+.++++++.......++++++.+.+|+.++|+||||||||||+++|+|+++|+.| .+.+-+.. ..+.+
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~- 80 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNELGDHVGY- 80 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHHHhheEE-
Confidence 4578888754222357888899999999999999999999999999999988743 33321110 01111
Q ss_pred CCCCccc-cccc-cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhH
Q 025371 167 GDIPHSA-IGTA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWL 237 (254)
Q Consensus 167 ~~~~~~~-~~~~-~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~ 237 (254)
+++.. +... ..-..+|+|++||+++++++..+|+++|+|||++++|... +.++.+.|.++|+++|+.+.
T Consensus 81 --~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 158 (173)
T cd03246 81 --LPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158 (173)
T ss_pred --ECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 11111 0000 0011289999999999999999999999999999999876 33444568899999999877
Q ss_pred HHHhCChhh
Q 025371 238 ENIIKNPIL 246 (254)
Q Consensus 238 ~~~~~~~~~ 246 (254)
.+. +++++
T Consensus 159 ~~~-~d~v~ 166 (173)
T cd03246 159 LAS-ADRIL 166 (173)
T ss_pred HHh-CCEEE
Confidence 764 55543
No 35
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.6e-24 Score=174.71 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC------------Cccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------------NEIG 164 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------------~ei~ 164 (254)
+.++++++.... .++.+++.+++|++++|+||||||||||+++|+|+++++.| .+.+-... ..+.
T Consensus 3 ~~~l~~~~~~~~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG-SILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeE--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccchhHHHHhhcEE
Confidence 457888876532 58888999999999999999999999999999999988633 33321110 0111
Q ss_pred cCCCCCccc--cccccccCC-CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEc
Q 025371 165 GDGDIPHSA--IGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAH 233 (254)
Q Consensus 165 ~~~~~~~~~--~~~~~~~~~-~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H 233 (254)
+....+... ......... +|+|++||+++++++..+|+++|+|||++++|... +.++.++ |.++|+++|
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 111111000 000011112 89999999999999999999999999999999876 3444455 789999999
Q ss_pred hhhHHHHhCChhh
Q 025371 234 GEWLENIIKNPIL 246 (254)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (254)
+.+....+.+.++
T Consensus 160 ~~~~~~~~~d~i~ 172 (178)
T cd03229 160 DLDEAARLADRVV 172 (178)
T ss_pred CHHHHHHhcCEEE
Confidence 9877776656554
No 36
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-24 Score=185.04 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=108.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC------------ccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------------EIG 164 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~------------ei~ 164 (254)
+.+++++|... ...+++++..+++|+.++|+|+||||||||++.++|++.|..| .| .++... .++
T Consensus 6 ~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G-~v-~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 6 AENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG-EV-LVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred EEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCC-EE-EECCeeccchhhHHHhhcceE
Confidence 45788888665 3458889999999999999999999999999999999999743 33 222110 011
Q ss_pred cCCCCCcccc----------------c----------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 165 GDGDIPHSAI----------------G----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 165 ~~~~~~~~~~----------------~----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+..+.|...+ + ..+....+|+||+||++||.+|+++|++||+
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL 162 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL 162 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence 1001111000 0 0133445799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.+. |+|+|++||+.+....++++++.
T Consensus 163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v 211 (235)
T COG1122 163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211 (235)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence 99999999886 4455555 68999999998888887776654
No 37
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2.4e-24 Score=180.68 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=105.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.+++++++......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG-EVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEcccCCHHHHHhhceEE
Confidence 3578888765111248889999999999999999999999999999999988643 222 22
Q ss_pred cCCCc--cccCC-----C-------CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 158 DTSNE--IGGDG-----D-------IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 158 ~~~~e--i~~~~-----~-------~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
.+... +.... . ...... + ..+....+|+|++||+++++|+..+|+++|+||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 22110 00000 0 000000 0 012334569999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 209 IGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 206 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIV 206 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999876 344445688999999998877776666543
No 38
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2.2e-24 Score=180.33 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=104.8
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------eEEEEcCCCc
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSNE 162 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------~i~~~~~~~e 162 (254)
.++++++... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+...
T Consensus 3 ~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 3 ENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred ccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 4778877541 12488889999999999999999999999999999999886432 1222222211
Q ss_pred --cccC------C----CCCcc--cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 163 --IGGD------G----DIPHS--AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 163 --i~~~------~----~~~~~--~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
+... . ..... .. + ..+....+|+||+||+++++|+..+|+++++|||++++|+..
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 161 (205)
T cd03226 82 YQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN 161 (205)
T ss_pred hhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH
Confidence 0000 0 00000 00 0 012233469999999999999999999999999999999876
Q ss_pred -------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 218 -------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 -------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+.|.++|+++|+.+....++++++.
T Consensus 162 ~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 198 (205)
T cd03226 162 MERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLL 198 (205)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 344445689999999998877766665543
No 39
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=5.8e-24 Score=173.77 Aligned_cols=131 Identities=19% Similarity=0.135 Sum_probs=99.3
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCcccccccc
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR 178 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~ 178 (254)
+++++++.... ++.. +.+++|++++|+||||||||||+++|+|+++|+. +.|.+ +. ..+.+ .++
T Consensus 5 ~l~~~~~~~~~--l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~-~g-~~i~~---~~q------- 68 (177)
T cd03222 5 DCVKRYGVFFL--LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEW-DG-ITPVY---KPQ------- 68 (177)
T ss_pred CeEEEECCEEE--EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-cEEEE-CC-EEEEE---Ecc-------
Confidence 67888866543 4443 5789999999999999999999999999999874 44433 22 11221 111
Q ss_pred ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCC-ceEEEEEchhhHHHHhCChhh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERG-VMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G-~~vi~t~H~~~~~~~~~~~~~ 246 (254)
...+|+|++||+++++++..+|+++++|||++++|... +.++.+++ .++|+++|+.+....++++++
T Consensus 69 -~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 69 -YIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred -cCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 11189999999999999999999999999999999876 33444554 899999999887776666553
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.2e-24 Score=180.31 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=104.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.
T Consensus 3 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 3 LKGLSKTYGSVR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeeEEEeCCee--eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 457888886533 588999999999999999999999999999999999876332 12222221
Q ss_pred CccccCC----------C---CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGDG----------D---IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~~----------~---~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+.... . ..... . + ..+....+|+||+||++++++|..+|++||+|||+++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1110000 0 00000 0 0 0022234699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 203 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAV 203 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEE
Confidence 99876 334434 489999999998876666666543
No 41
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.9e-24 Score=188.93 Aligned_cols=147 Identities=21% Similarity=0.330 Sum_probs=107.3
Q ss_pred EEEEEEEEC-ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---------CccccC
Q 025371 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~-~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------~ei~~~ 166 (254)
+.+++.+++ ... .++++++.+++|++++++||||||||||+|+|+|++.|+.| .|.+.... ..+++.
T Consensus 7 ~~~l~k~~~~~~~--~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G-~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 7 VRNLTKKYGGDKT--ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred ecceEEEeCCCCE--EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEEcCEeCccCHHHHHhheEEE
Confidence 357888888 344 48999999999999999999999999999999999998733 33322110 001111
Q ss_pred CC----CCccc----------------------c-------c--c--ccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 167 GD----IPHSA----------------------I-------G--T--ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 167 ~~----~~~~~----------------------~-------~--~--~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
.+ ++... + + . .+++..+|+||+||+.++.||..+|+++|||||
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 00 00000 0 0 0 123455799999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCC-ceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAERG-VMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G-~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|+.. +.++++.| .||++|||..+..+.++++++
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~ 208 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI 208 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence 99999987 45556667 799999999777777666554
No 42
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.3e-24 Score=179.24 Aligned_cols=149 Identities=19% Similarity=0.292 Sum_probs=109.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc-CC------------Ccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-TS------------NEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~-~~------------~ei 163 (254)
+.+++.+|+... ..++++++.+++||.++|+||+|||||||||+|.|++.++.| .+.+-. +. ..+
T Consensus 6 ~~nl~k~yp~~~-~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 6 VKNLSKTYPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred EeeeeeecCCCc-eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHHHHHHHHhc
Confidence 567888885433 358899999999999999999999999999999999998754 332221 10 001
Q ss_pred ccC----CCCCcccc-------------------c----------------------cccccCCCChhHHHHHHHHHHHc
Q 025371 164 GGD----GDIPHSAI-------------------G----------------------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 164 ~~~----~~~~~~~~-------------------~----------------------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
++. ..++...+ + ...+...+||||+||++|||||.
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence 110 00111100 0 01344567999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++|++|+.|||.+.+|+.. +.++. +.|.|+|++.|..+++..++++++-
T Consensus 164 Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riig 220 (258)
T COG3638 164 QQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG 220 (258)
T ss_pred cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheE
Confidence 9999999999999999876 33333 5699999999999999998887754
No 43
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.91 E-value=3.4e-24 Score=180.65 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=103.1
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE------------------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------ 156 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------ 156 (254)
+.+++++++... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHHHHHHh
Confidence 457888886410 1258899999999999999999999999999999999987633 2222
Q ss_pred -----EcCCCccccCCC----------CCcc-------ccc-----------cccccCCCChhHHHHHHHHHHHccCCCE
Q 025371 157 -----VDTSNEIGGDGD----------IPHS-------AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 157 -----~~~~~ei~~~~~----------~~~~-------~~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
+.+...+..... .... ... ..+....+|+||+||+++++|+..+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 111111100000 0000 000 0012234699999999999999999999
Q ss_pred EEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||+|||++++|+.. +.++.+ .|.++|+++|+.+..+ +++.++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~ 211 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRII 211 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEE
Confidence 99999999999876 344444 4899999999987776 555543
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.7e-24 Score=180.19 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=104.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~ 158 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++.
T Consensus 3 ~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEECCEE--eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecCcChHHHhhcEEEec
Confidence 457888886543 58899999999999999999999999999999999987643 222 222
Q ss_pred CCCccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+..... ..... . + ..+....+|+||+||+++++|+..+|+++|+|||+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2111100000 00000 0 0 01223346999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+++|... +.++.++ |.++|+++|+.+....+.++++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~ 203 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA 203 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999876 3344444 8899999999887777666654
No 45
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.91 E-value=7.7e-24 Score=171.59 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=103.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCC---CCccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD---IPHSA 173 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~---~~~~~ 173 (254)
+.++++++... ...++++++.+.+|++++|+||||||||||+++|+|+++++.| .+. ++....+.+..+ .+...
T Consensus 3 ~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~-~~~~~~i~~~~q~~~~~~~t 79 (166)
T cd03223 3 LENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-RIG-MPEGEDLLFLPQRPYLPLGT 79 (166)
T ss_pred EEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEE-ECCCceEEEECCCCcccccc
Confidence 45788887532 1257889999999999999999999999999999999988744 222 222112221100 01101
Q ss_pred cccc-c--ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH----HhCCceEEEEEchhhHHHHhCChhh
Q 025371 174 IGTA-R--RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 174 ~~~~-~--~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~----~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.... . ....+|+|++||+++++++..+|+++|+|||++++|......+ .+.+.++|+++|+.+... +.++++
T Consensus 80 v~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~-~~d~i~ 158 (166)
T cd03223 80 LREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK-FHDRVL 158 (166)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh-hCCEEE
Confidence 1000 0 3456899999999999999999999999999999998773322 233789999999987665 555554
Q ss_pred h
Q 025371 247 S 247 (254)
Q Consensus 247 ~ 247 (254)
.
T Consensus 159 ~ 159 (166)
T cd03223 159 D 159 (166)
T ss_pred E
Confidence 3
No 46
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.91 E-value=4.6e-24 Score=191.26 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=108.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------eEEEEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----------------~i~~~~~ 159 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+
T Consensus 44 i~nl~k~y~~~~--~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 44 LAGVSKSYGDKA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred EEEEEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 568898887653 588999999999999999999999999999999999987432 1222222
Q ss_pred CCccccC----------CCCCccc----------c----c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGD----------GDIPHSA----------I----G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~----------~~~~~~~----------~----~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+... ....... + + ..++...+|+||+||+++++||.++|++||+|||++
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 2111100 0000000 0 0 012333569999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 212 EAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 212 ~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++|+.. +.++.+.|.|+|+++|..+..+.++++++.
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 999876 444555699999999998877777666643
No 47
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.91 E-value=1.5e-23 Score=176.74 Aligned_cols=211 Identities=18% Similarity=0.223 Sum_probs=166.1
Q ss_pred CCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhc------cc--CCCceeEEc---CceeEEeEEecC
Q 025371 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVG------EF--GGDNRAGIE---GTLHRISAIRSR 93 (254)
Q Consensus 25 ~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~------~~--~~~~~~~~~---~~~~Rv~~~~~~ 93 (254)
....+|+.|..|-||.++++|+. .++++.|+|.++...++..+- .+ ....++.+. +.+||||++.++
T Consensus 16 ~~~aSDlfIt~g~Ppsmkv~g~~--tpi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr 93 (375)
T COG5008 16 EQKASDLFITAGFPPSMKVDGKL--TPITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQR 93 (375)
T ss_pred hcCCcceEEEcCCCcceeecCce--eecCCCCCCHHHHHHHHHHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhc
Confidence 36889999999999999999987 588899999999988775541 12 244555553 235999999987
Q ss_pred CCcEEEEEEEECceee------cchhhhhcc-ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC
Q 025371 94 KGAIVGLTCRVGRAVS------GHIDMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD 166 (254)
Q Consensus 94 ~g~~~~l~ir~~~~~~------~~~~~l~~~-i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~ 166 (254)
+-. ++.+|.....+ +.++.++.+ +.+...++++|++||||||.|.++.|+-+.+..++|++++++.|+..
T Consensus 94 ~~~--g~VlRrI~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih- 170 (375)
T COG5008 94 GLA--GLVLRRIETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIH- 170 (375)
T ss_pred Ccc--hhhhhhhhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHh-
Confidence 543 77776644333 234444443 56677899999999999999999999998887889999999988742
Q ss_pred CCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 167 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
.|.. ....+.++.-.-+.+.+++..+|++.||+|+++|+++.+..+...+++++||.+++|.|+++..++++|-
T Consensus 171 ---~h~~-CIvTQREvGvDTesw~~AlkNtlRQapDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~anQaleRI 244 (375)
T COG5008 171 ---KHKR-CIVTQREVGVDTESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNANQALERI 244 (375)
T ss_pred ---cccc-eeEEeeeeccchHHHHHHHHHHHhcCCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCchHHHHHH
Confidence 2221 1123445555678899999999999999999999999989999999999999999999999999988754
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6e-24 Score=181.27 Aligned_cols=148 Identities=22% Similarity=0.244 Sum_probs=104.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++.... .++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccChhhHHHHhcce
Confidence 457888886533 58899999999999999999999999999999999988633 2222
Q ss_pred --EcCCCccccC---------C-C----CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 157 --VDTSNEIGGD---------G-D----IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 157 --~~~~~ei~~~---------~-~----~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+.+...+... . . ...... + ..+....+|+||+||+++++|+..+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2111111000 0 0 000000 0 012223469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|||++++|... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~ 209 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV 209 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence 999999999876 344444 489999999998877666665543
No 49
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.91 E-value=6.1e-24 Score=178.61 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=103.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .+.+
T Consensus 4 ~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 4 FHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG-QVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhhe
Confidence 45788887421 1358889999999999999999999999999999999987633 3322
Q ss_pred --EcCCCccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 157 --VDTSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 157 --~~~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+.+...+..... ..... . + ..+....+|+|++||++++++|..+|++||+
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllL 161 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 111111100000 00000 0 0 0012234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~ 208 (214)
T TIGR02673 162 DEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI 208 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999876 34444568999999999877776666554
No 50
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.91 E-value=5.4e-24 Score=188.25 Aligned_cols=149 Identities=20% Similarity=0.313 Sum_probs=106.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------eEEEEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----------------~i~~~~~ 159 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+
T Consensus 7 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 7 LVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred EEeEEEEeCCeE--EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 568888886543 588999999999999999999999999999999999876332 1222222
Q ss_pred CCccccC----------C---CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGD----------G---DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~----------~---~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+... . ...... . + ..+....+|+||+||+++++|+..+|++||+|||++
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 2111100 0 000000 0 0 012233469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 212 EAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 212 ~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++|+.. +.++.+.|.|+|+++|+.+....++++++.
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~ 207 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 207 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 999876 444445689999999998877776666543
No 51
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=7.8e-24 Score=178.84 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=104.1
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------eEEEEcCCC
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSN 161 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------~i~~~~~~~ 161 (254)
+.+++++++... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.++.+..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~ 82 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQD 82 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEeccc
Confidence 457888876410 12478899999999999999999999999999999999876432 122222221
Q ss_pred ccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 162 EIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 162 ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
.+..... ..... . + ..+....+|+|++||+++++|+..+|+++|+|||++++
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 1110000 00000 0 0 01223457999999999999999999999999999999
Q ss_pred HHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 214 EAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 214 d~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+.. +.++.+ .|.++|+++|+.+....+++.++
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 203 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVV 203 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE
Confidence 9876 334433 48899999999876666656554
No 52
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1e-23 Score=189.72 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=105.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCccccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~~-- 166 (254)
+.+++++++... .++++++.+++|++++|+|||||||||||++|+|+.+|+.| .|.+-+. ...+.+.
T Consensus 9 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 9 LKNITKRFGSNT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEeEEEEECCeE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeC
Confidence 468888886533 47889999999999999999999999999999999998743 2222110 0111110
Q ss_pred --CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 167 --GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 167 --~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
..+|+..+. ..+....+|+||+||++++|||..+|+++++|||++
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s 165 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 011221100 012233469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|... +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 166 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~ 208 (351)
T PRK11432 166 NLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVI 208 (351)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 999876 333333 48999999999887766666654
No 53
>PRK13764 ATPase; Provisional
Probab=99.91 E-value=8.4e-23 Score=192.91 Aligned_cols=212 Identities=20% Similarity=0.189 Sum_probs=147.5
Q ss_pred CCCeEEEEEecCCCcEEEEec--cCCceeccccCCCHHHHHHHHHHhcccCCC---c-----eeEE---cCceeEEeEEe
Q 025371 25 RGQLLEVILDLGRLPEARYLG--EFGGKYLRSTEVSVEELEYAQSAVGEFGGD---N-----RAGI---EGTLHRISAIR 91 (254)
Q Consensus 25 ~~~v~ei~i~~g~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~---~-----~~~~---~~~~~Rv~~~~ 91 (254)
+++.++||+..|.||++|..+ .+....+.+.++|.++++.+++.+...... . .++. ....+|++++.
T Consensus 141 ~~~asdvhL~~g~pp~~r~~~~G~~~l~~i~~~~lt~~~l~~la~~i~~~~~~~~~~~~e~~~p~~~~~~~~~~Rv~i~~ 220 (602)
T PRK13764 141 DEETMSVHLKEGVPPMAKKGKPGEWKLVKIRDEPLTEEELEEIAREILERAKRDPDGFIEIERRGATVVQLGNYRIVIAR 220 (602)
T ss_pred CCCceeEEEcCCCCcEEEEecCCceEEEECCCCCCCHHHHHHHHHHHHHHhcccccccceeecCcccccCCCCEEEEEEc
Confidence 389999999999999999874 222234556789999999999988433211 1 1111 11138999999
Q ss_pred cCCCcEEEEEEEECceee-----cch-hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc
Q 025371 92 SRKGAIVGLTCRVGRAVS-----GHI-DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG 165 (254)
Q Consensus 92 ~~~g~~~~l~ir~~~~~~-----~~~-~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~ 165 (254)
+|......++++.+...+ +.. ..+..+...+.+++|+|||||||||++++|+..++.. +..+.+++++.|+..
T Consensus 221 ~p~~~~~~itirrp~~~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~~ 299 (602)
T PRK13764 221 PPFSDGIEITAVRPVVKLSLEDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQV 299 (602)
T ss_pred cCccccEEEEEEccCCCCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCccccC
Confidence 986433356666543222 111 1222335667889999999999999999999999753 556669999999853
Q ss_pred CCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 166 DGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
. + .+. ++....+ ........+|+++||+|++||+++.++...+..+...|+++++|.|++++.+++.|..
T Consensus 300 ~----~-~i~---q~~~~~~--~~~~~~~~lLR~rPD~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~ 369 (602)
T PRK13764 300 P----P-EIT---QYSKLEG--SMEETADILLLVRPDYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRFI 369 (602)
T ss_pred C----C-cce---EEeeccc--cHHHHHHHHHhhCCCEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH
Confidence 2 1 111 1111111 1223345568999999999999999888887777788999999999999999998876
Q ss_pred hh
Q 025371 246 LS 247 (254)
Q Consensus 246 ~~ 247 (254)
..
T Consensus 370 ~~ 371 (602)
T PRK13764 370 GR 371 (602)
T ss_pred hh
Confidence 43
No 54
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-23 Score=189.93 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=104.0
Q ss_pred EEEEEEEE-CceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------EEc
Q 025371 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~-~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-----------------~~~ 158 (254)
+.++++++ +... .++++++.+.+|++++|+|||||||||||++|+|+.+|+.| .|. ++.
T Consensus 6 i~~l~~~~~~~~~--~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 6 LQAVRKSYDGKTQ--VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEeEEEEeCCCCE--EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEe
Confidence 45788888 4432 47889999999999999999999999999999999998743 222 222
Q ss_pred CCCccccCCCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 159 TSNEIGGDGDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 159 ~~~ei~~~~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+...+ +|+..+. ..+....+|+||+||++++|||..+|++|+
T Consensus 83 Q~~~l-----fp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 83 QNYAL-----YPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred CCccc-----cCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 21111 1111100 012233469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|... +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~ 206 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVV 206 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999876 334444 48999999999776666666554
No 55
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=1.1e-23 Score=190.23 Aligned_cols=148 Identities=20% Similarity=0.255 Sum_probs=106.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC--CCeEEEEcCC--------CccccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTS--------NEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~--~~~i~~~~~~--------~ei~~~ 166 (254)
+.+++++|+... .++++++.+.+|++++|+|||||||||||++|+|+.+|+. | .|.+.+.. ..+.+.
T Consensus 8 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 8 IDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEECCeE--EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECCCCCHHHCCEEEE
Confidence 457888887543 5888999999999999999999999999999999999874 3 33221100 011110
Q ss_pred ----CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 167 ----GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 167 ----~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
..+|+..+. ..+....+|+||+||+++++||..+|++|+||||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 011221100 0123334699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhC--CceEEEEEchhhHHHHhCChhhh
Q 025371 210 GTEAEAHA-------CRSIAER--GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~--G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++++|... +.++.+. |.|+|++||+.+.+..+.++++.
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~v 211 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGI 211 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999876 3344444 78999999998877766666543
No 56
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=9.1e-24 Score=173.53 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=101.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-C----------cccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-N----------EIGG 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-~----------ei~~ 165 (254)
+.++++++ .++.+++.+++|+.++|+||||||||||+++|+|+++|+.| .+.+.+.. . .+.+
T Consensus 7 ~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 7 VRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG-EITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccCHHHHHhCCeEE
Confidence 34566665 47888899999999999999999999999999999998744 33322110 0 1111
Q ss_pred CCCC-------Ccccccccccc-CCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEE
Q 025371 166 DGDI-------PHSAIGTARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIG 230 (254)
Q Consensus 166 ~~~~-------~~~~~~~~~~~-~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~ 230 (254)
..+. +.......-.. ..+|+||+||+++++|+..+|+++++|||++++|... +.++.+.|.++|+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 159 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1110 00011000001 1189999999999999999999999999999999876 3444456889999
Q ss_pred EEchhhHHHHhCChhhh
Q 025371 231 TAHGEWLENIIKNPILS 247 (254)
Q Consensus 231 t~H~~~~~~~~~~~~~~ 247 (254)
++|+.+....++++++.
T Consensus 160 ~sh~~~~~~~~~d~v~~ 176 (182)
T cd03215 160 ISSELDELLGLCDRILV 176 (182)
T ss_pred EeCCHHHHHHhCCEEEE
Confidence 99997767666666543
No 57
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.91 E-value=1.2e-23 Score=176.63 Aligned_cols=148 Identities=17% Similarity=0.232 Sum_probs=105.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++.... .++.+++.+.+|++++|+||||||||||+++|+|+++++.| .+.+
T Consensus 3 ~~~l~~~~~~~~--~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNLHKSFGDFH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG-TIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEECCeE--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccchhHHHHHhcce
Confidence 457888886533 58889999999999999999999999999999999987643 2222
Q ss_pred -EcCCCccccCCC--------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 157 -VDTSNEIGGDGD--------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 157 -~~~~~ei~~~~~--------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+.+...+..... ..... . + ..+....+|+|++|++++++++..+|+++|+
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111100000 00000 0 0 0122234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|+.. +.++.++|.++|+++|+.+....+++.++.
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~ 207 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF 207 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999876 444445688999999998877766665543
No 58
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.91 E-value=1.4e-23 Score=176.33 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=106.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------eEEEEcCCCcc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------~i~~~~~~~ei 163 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+...+
T Consensus 2 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 2 VEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred cccceeEECCEE--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 347888886532 588899999999999999999999999999999999886432 13333332211
Q ss_pred c----cC-------CCCCc--------cc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 164 G----GD-------GDIPH--------SA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 164 ~----~~-------~~~~~--------~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
. .. ..... .. . + ..+....+|+|++||+++++|+..+|++||+|||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 00 00000 00 0 0 0123345799999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 99999876 344445688999999998877766666543
No 59
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.91 E-value=1.7e-23 Score=175.25 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=105.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-----------------EcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-----------------~~~ 159 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|+++++.| .+.+ +.+
T Consensus 3 ~~~l~~~~~~~--~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDLTKTYGKK--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEECCe--EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEEecC
Confidence 45788888553 258889999999999999999999999999999999987643 2222 222
Q ss_pred CCccccCCC----------CC---ccccc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHH
Q 025371 160 SNEIGGDGD----------IP---HSAIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (254)
Q Consensus 160 ~~ei~~~~~----------~~---~~~~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~ 215 (254)
...+..... .. ..... ..+....+|+|++||+++++++..+|++|++|||++++|.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 111100000 00 00000 0012234699999999999999999999999999999998
Q ss_pred HH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 216 HA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 216 ~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.. +.++.+.|.++|+++|+.+....+.++++.
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 198 (208)
T cd03268 160 DGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGI 198 (208)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 76 334445688999999998877766666543
No 60
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-24 Score=183.54 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=103.0
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC----C-------CccccC-
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----S-------NEIGGD- 166 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~----~-------~ei~~~- 166 (254)
+++.++++.. .+++++..|+.|+.+++.||||||||||||+|+|+..|+. ++|.+-++ . ..+++.
T Consensus 7 ~~~~~~~~~~--a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~-G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 7 NVKKRFGAFG--ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA-GRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred hhhhhccccc--ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC-ceEEECCEeccchhccchhhcceeEEE
Confidence 4444444433 4668888899999999999999999999999999999984 44443221 1 111111
Q ss_pred ---CCCCcccccc-----------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 167 ---GDIPHSAIGT-----------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 167 ---~~~~~~~~~~-----------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
..++|+++.. .+....+||||+||+++||||+..|++|+|||
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred echhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 1233332110 01222359999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 209 IGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++.+|+.. ++++.+ .|++++++||+.+.+..+.++++.
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv 210 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV 210 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE
Confidence 999999876 334444 499999999996666666665543
No 61
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.90 E-value=1.1e-23 Score=177.66 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=105.1
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE------------------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------ 156 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------ 156 (254)
+.+++++++... ...++++++.+.+|++++|+|+||||||||+++|+|+++|+.| .|.+
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~ 82 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKEPAEARRRLGF 82 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEEcccCHHHHHhhEEE
Confidence 457888886531 1258889999999999999999999999999999999988643 3322
Q ss_pred EcCCCccccCCC-------------CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 157 VDTSNEIGGDGD-------------IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 157 ~~~~~ei~~~~~-------------~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
+.+...+..... ...... + ..+....+|+|++||+++++|+..+|++||+||
T Consensus 83 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDE 162 (218)
T cd03266 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDE 162 (218)
T ss_pred ecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111100000 000000 0 001223469999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 209 IGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++++|... +.++.+.|.++|+++|+.+....+.++++.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~ 208 (218)
T cd03266 163 PTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVV 208 (218)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEE
Confidence 999999876 444445689999999998776666665543
No 62
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.90 E-value=1.2e-23 Score=189.35 Aligned_cols=147 Identities=18% Similarity=0.222 Sum_probs=105.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCccccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~~-- 166 (254)
+.+++++++... .++++++.+++|++++|+|||||||||||++|+|+.+|+.| .|.+-+. ...+.+.
T Consensus 7 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 7 IDNIRKRFGAFT--ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEeCCeE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeC
Confidence 458888887543 47889999999999999999999999999999999998743 3322110 0011110
Q ss_pred --CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 167 --GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 167 --~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
..+|+..+. ..+....+|+||+||++++|||..+|++++||||++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 111221100 012233469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|... +.++.+ .|.|+|++||+.+....+.++++
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~ 206 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV 206 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 999876 333333 48999999999887766666554
No 63
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=1e-23 Score=177.23 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=104.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+
T Consensus 3 ~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 3 FINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHHHhe
Confidence 45788888532 1258889999999999999999999999999999999987633 3322
Q ss_pred --EcCCCccccCCC-------------CCcccc-----------cc----ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 157 --VDTSNEIGGDGD-------------IPHSAI-----------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 157 --~~~~~ei~~~~~-------------~~~~~~-----------~~----~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+.+...+..... ...... +. .+....+|+|++||+++++|+..+|+++|+
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 211111100000 000000 00 012234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.+.|.++|+++|+.+....+++.++.
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~ 208 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIA 208 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999876 444445689999999998777766555443
No 64
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.90 E-value=1.6e-23 Score=178.15 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=103.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEE--eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccCCHhHHHhccEEE
Confidence 457888886543 58899999999999999999999999999999999988643 2222
Q ss_pred EcCCCccccCCC----------CCccc-------c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 157 VDTSNEIGGDGD----------IPHSA-------I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 157 ~~~~~ei~~~~~----------~~~~~-------~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
+.+...+..... ..... . + ..+....+|+|++||+++++|+..+|++||+||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 111111000000 00000 0 0 001223469999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 209 IGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 160 Pt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~ 204 (232)
T cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY 204 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999876 33444568999999999876666655554
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.90 E-value=1.7e-23 Score=175.87 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=103.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.++++++.... .++++++.+++|++++|+||||||||||+++|+|+++|..|. ++.++.+.
T Consensus 3 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 3 LENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEeeEEEECCee--eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 457888876543 588999999999999999999999999999999999876332 12222221
Q ss_pred CccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+..... ..... . + ..+....+|+|++||+++++++..+|+++|+|||+++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11100000 00000 0 0 0122234699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 213 AEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 213 ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|..+ +.++.+ .|.|+|+++|+.+....+.++++
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 202 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 99876 334444 48999999999877666655554
No 66
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.90 E-value=1.2e-23 Score=172.58 Aligned_cols=148 Identities=15% Similarity=0.249 Sum_probs=105.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-ccc------cCCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG------GDGDI 169 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-ei~------~~~~~ 169 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|+++|+. +.|.+-+... ... ....+
T Consensus 2 ~~~l~~~~~~~--~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~-G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 2 VENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS-GEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred eeEEEEEECCe--eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEECCcCCHHHHHHHHhHH
Confidence 45788888653 25888899999999999999999999999999999998874 4443321110 000 00000
Q ss_pred Cc----ccc--ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchh
Q 025371 170 PH----SAI--GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGE 235 (254)
Q Consensus 170 ~~----~~~--~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~ 235 (254)
++ ..+ ...+....+|+|++||+++++++..+|+++|+|||++++|... +.++.++ |.++|+++|+.
T Consensus 79 ~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 79 PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 00 000 0113345689999999999999999999999999999999876 3334444 78999999998
Q ss_pred hHHHHhCChhhh
Q 025371 236 WLENIIKNPILS 247 (254)
Q Consensus 236 ~~~~~~~~~~~~ 247 (254)
+....+.++++.
T Consensus 159 ~~~~~~~d~~~~ 170 (180)
T cd03214 159 NLAARYADRVIL 170 (180)
T ss_pred HHHHHhCCEEEE
Confidence 876566555543
No 67
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.90 E-value=1.4e-23 Score=191.49 Aligned_cols=149 Identities=20% Similarity=0.300 Sum_probs=108.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|..|. ++.++.
T Consensus 6 ~~nls~~y~~~~--vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 6 VSDLSVEFGDTT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred EeeEEEEECCEE--EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 468888887643 488999999999999999999999999999999999886331 122332
Q ss_pred CCCccccC---------CCCCcc-ccc----------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------GDIPHS-AIG----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~-~~~----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+.+. ...++. .+. ..+....+|+||+||+++++||.++|++|||
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22211110 000000 000 0123345699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|+.. +.++.+.|.|+|+++|+.+....++++++.
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~ 211 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVL 211 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999875 444555689999999998888777766653
No 68
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.1e-23 Score=171.32 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=102.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-ccc------cCCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIG------GDGDI 169 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-ei~------~~~~~ 169 (254)
+.++++++.......++++++.+++|++++|+||||||||||+++|+|++++..| .+.+..... ... ....+
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhhhcCHHHHHhhEEEE
Confidence 4578888765312357888999999999999999999999999999999988743 443321110 000 00011
Q ss_pred Ccc-cccccc-ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHH
Q 025371 170 PHS-AIGTAR-RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 170 ~~~-~~~~~~-~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~ 240 (254)
++. .+.... .-..+|+|++||+++++++..+|+++++|||++++|... +.++ ..+.++|+++|+.+....
T Consensus 82 ~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 82 PQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred cCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHh
Confidence 111 011000 011289999999999999999999999999999999876 2233 247899999999877776
Q ss_pred hCChhh
Q 025371 241 IKNPIL 246 (254)
Q Consensus 241 ~~~~~~ 246 (254)
+++++
T Consensus 161 -~d~~~ 165 (171)
T cd03228 161 -ADRII 165 (171)
T ss_pred -CCEEE
Confidence 55543
No 69
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=2.3e-23 Score=170.50 Aligned_cols=143 Identities=14% Similarity=0.126 Sum_probs=102.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC----------ccccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------EIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~----------ei~~~ 166 (254)
+.++++++.......++++++.+++|++++|+||||||||||+++|+|++++..| .+. ++... .+.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~-~~g~~~~~~~~~~~~~i~~- 79 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EIT-LDGVPVSDLEKALSSLISV- 79 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEE-ECCEEHHHHHHHHHhhEEE-
Confidence 4577887754322357889999999999999999999999999999999988744 333 22210 0111
Q ss_pred CCCCccc-ccc--c--cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEch
Q 025371 167 GDIPHSA-IGT--A--RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHG 234 (254)
Q Consensus 167 ~~~~~~~-~~~--~--~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~ 234 (254)
+++.. +.. . .-...+|+|++||+++++++..+|+++|+|||++++|... +.++ .++.++|+++|+
T Consensus 80 --~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~ 156 (178)
T cd03247 80 --LNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHH 156 (178)
T ss_pred --EccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 11110 000 0 0045689999999999999999999999999999999876 2233 347899999999
Q ss_pred hhHHHHhCChhh
Q 025371 235 EWLENIIKNPIL 246 (254)
Q Consensus 235 ~~~~~~~~~~~~ 246 (254)
.+.... .++++
T Consensus 157 ~~~~~~-~d~~~ 167 (178)
T cd03247 157 LTGIEH-MDKIL 167 (178)
T ss_pred HHHHHh-CCEEE
Confidence 887764 45443
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.9e-23 Score=175.16 Aligned_cols=148 Identities=23% Similarity=0.282 Sum_probs=104.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC--------------eEEEEcCCCc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNE 162 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------~i~~~~~~~e 162 (254)
+.+++++++... .++.+++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+...
T Consensus 3 ~~~l~~~~~~~~--~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 3 VENVTKRFGRVT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEECCEE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 457888876533 478889999999999999999999999999999999876332 1222222211
Q ss_pred cccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 163 IGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 163 i~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
+..... .+... . + ..+....+|+||+||+++++++..+|+++|+|||++++|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 110000 00000 0 0 001223469999999999999999999999999999999
Q ss_pred HHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 215 AHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 215 ~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.. +.++.+.|.++|+++|+.+....++++++
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~ 199 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL 199 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEE
Confidence 876 34444568899999999877666555543
No 71
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=180.34 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=105.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------eEEEEcCCCcc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------~i~~~~~~~ei 163 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+...+
T Consensus 15 i~~l~~~~~~~~--il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 15 LNAVSKRYGERT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred EEEEEEEECCcc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 568888886532 478899999999999999999999999999999999886432 12222222111
Q ss_pred ccCC------C--CCcc---cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH----
Q 025371 164 GGDG------D--IPHS---AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 217 (254)
Q Consensus 164 ~~~~------~--~~~~---~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---- 217 (254)
.... . .... .. + ..+....+|+||+||+++++++..+|+++|+|||++++|...
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l 172 (257)
T PRK11247 93 LPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEM 172 (257)
T ss_pred CCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 1000 0 0000 00 0 012334579999999999999999999999999999999876
Q ss_pred ---HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 218 ---CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 ---~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+ .|.++|+++|+.+....++++++.
T Consensus 173 ~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~ 206 (257)
T PRK11247 173 QDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLL 206 (257)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 334333 488999999998876666665543
No 72
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=188.56 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=105.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.+++++++... .++++++.+++|++++|+|||||||||||++|+|+++|+.|. ++.++.+.
T Consensus 6 i~~l~~~~~~~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 6 LRNVTKAYGDVV--ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EEEEEEEeCCeE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 468888886543 478899999999999999999999999999999999886332 12222222
Q ss_pred CccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+..... ..... . + ..+....+|+||+||+++++||..+|++||+|||+++
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11110000 00000 0 0 0122334699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 213 AEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 213 ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|... +.++.+ .|.|+|++||+.+....++++++
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~ 205 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEE
Confidence 99876 344444 48999999999877766666554
No 73
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.7e-23 Score=182.32 Aligned_cols=147 Identities=19% Similarity=0.176 Sum_probs=105.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+
T Consensus 4 ~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 4 TSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG-AVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred EEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc-EEEECCEEcccccCCHHHHHhheE
Confidence 46888888653 258899999999999999999999999999999999988643 2221
Q ss_pred -EcCCCccc-cCCCC-------------Ccccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 157 -VDTSNEIG-GDGDI-------------PHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 157 -~~~~~ei~-~~~~~-------------~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+.+..... +...+ ..... + ..+....+|+|++||++++++|..+|++||+
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 11111000 00000 00000 0 0112334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.++|.++|+++|+.+....+.++++
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~ 207 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY 207 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999876 44444568999999999887766666554
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.9e-23 Score=177.56 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+.
T Consensus 5 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 5 VRNVSKRFGDFV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred EEeEEEEECCEE--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecC
Confidence 457888886533 588999999999999999999999999999999999876331 12222222
Q ss_pred CccccC---------C-CC-Cc----c--c----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 161 NEIGGD---------G-DI-PH----S--A----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 161 ~ei~~~---------~-~~-~~----~--~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
..+... . .. .. . . . + ..+....+|+||+||+++++|+..+|++||+||
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 162 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 162 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111100 0 00 00 0 0 0 0 001223469999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 209 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++++|... +.++.++ |.++|+++|+.+....++++++
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~ 208 (239)
T cd03296 163 PFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV 208 (239)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999876 3344443 8899999999876666555554
No 75
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.90 E-value=2.1e-23 Score=173.17 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=103.8
Q ss_pred EEEEEEEECce----eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCCCCeEEEEcCC-------Ccc
Q 025371 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTS-------NEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~----~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~~~~i~~~~~~-------~ei 163 (254)
+.++++++... ....++++++.+++|++++|+||||||||||+++|+|++ ++.. +.+.+.+.. ..+
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~i 84 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS-GEVLINGRPLDKRSFRKII 84 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEeCchHhhhheE
Confidence 45788888641 123688999999999999999999999999999999999 7763 333332111 111
Q ss_pred ccCCC----CCcccccc----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceE
Q 025371 164 GGDGD----IPHSAIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVML 228 (254)
Q Consensus 164 ~~~~~----~~~~~~~~----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~v 228 (254)
.+... ++...+.. ......+|+|++||+++++|+..+|+++++|||++++|... +.++.+.|.++
T Consensus 85 ~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 164 (194)
T cd03213 85 GYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTI 164 (194)
T ss_pred EEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 21111 11111110 01112689999999999999999999999999999999876 33444568899
Q ss_pred EEEEchhh-HHHHhCChhh
Q 025371 229 IGTAHGEW-LENIIKNPIL 246 (254)
Q Consensus 229 i~t~H~~~-~~~~~~~~~~ 246 (254)
|+++|+.+ ....+.++++
T Consensus 165 ii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 165 ICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred EEEecCchHHHHHhcCEEE
Confidence 99999975 4444555543
No 76
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=175.92 Aligned_cols=147 Identities=22% Similarity=0.264 Sum_probs=109.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC------CccccC----
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGD---- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------~ei~~~---- 166 (254)
+.+++.+++.... .+++++.+++|++++++|+||+||||++|+|+|++.|+. ++|.+...+ ..|+|.
T Consensus 5 ie~vtK~Fg~k~a--v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~-G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKA--VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE-GEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceee--ecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC-ceEEEcCcchhhhhhhhcccChhhh
Confidence 4577777777654 889999999999999999999999999999999999974 344433321 122221
Q ss_pred CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 167 GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 167 ~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
+.+|...+. ...++..+|.|++|+.-+..++.++|+++|||||++++
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 122222110 01334456999999999999999999999999999999
Q ss_pred HHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 214 EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 214 d~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+.+ +.+++++|.|+|+++|..+-.+-+|++++
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 9865 66777899999999999665555555554
No 77
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.1e-23 Score=184.48 Aligned_cols=149 Identities=14% Similarity=0.179 Sum_probs=105.0
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------------- 160 (254)
+.+++++|.... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+....
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~ 83 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIFKDEKNKKKTKEKEKV 83 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEEeceeccccccccccccc
Confidence 468888886432 1358889999999999999999999999999999999988743 33221000
Q ss_pred ---------------------CccccCCCC-----Cccc------cc----------------------------ccccc
Q 025371 161 ---------------------NEIGGDGDI-----PHSA------IG----------------------------TARRM 180 (254)
Q Consensus 161 ---------------------~ei~~~~~~-----~~~~------~~----------------------------~~~~~ 180 (254)
..+.+..+. .... ++ ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 163 (305)
T PRK13651 84 LEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSP 163 (305)
T ss_pred ccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 001110000 0000 00 01123
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|+||+||+++|++|..+|++||+|||++++|+.. +.++.+.|.|+|+++|+.+....++++++
T Consensus 164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 3469999999999999999999999999999999876 34444569999999999876666555554
No 78
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.90 E-value=3e-23 Score=188.07 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=104.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------EEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-----------------~~~~ 159 (254)
+.+++++++... .++++++.+.+|++++|+|||||||||||++|+|+.+|+.| .|. ++.+
T Consensus 17 l~~l~~~~~~~~--~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 17 LRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEECCeE--EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEec
Confidence 457788876533 47788999999999999999999999999999999998633 222 2222
Q ss_pred CCccccCCCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 160 SNEIGGDGDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 160 ~~ei~~~~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
... .+|+..+. ..+....+|+||+||++++|||..+|++|+|
T Consensus 94 ~~~-----lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 94 SYA-----LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred Ccc-----cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111 11221100 0122234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.+ .|.++|++||+...+..+.++++
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~ 216 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIV 216 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999876 334444 48999999999877666666654
No 79
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.3e-23 Score=177.43 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=103.7
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-------------C
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------N 161 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-------------~ 161 (254)
+.+++++++... ...++.+++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+.+.. .
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~ 82 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKELRKARR 82 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHh
Confidence 457888876430 1257889999999999999999999999999999999988643 33221100 0
Q ss_pred ccccCC----CCCcccc-----------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 162 EIGGDG----DIPHSAI-----------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 162 ei~~~~----~~~~~~~-----------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+.+.. .++...+ + ..+....+|+||+||+++++++..+|+++
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 162 (233)
T cd03258 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVL 162 (233)
T ss_pred heEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011100 0000000 0 00122346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|... +.++.+. |.++|+++|+.+....+.+.++
T Consensus 163 lLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~ 212 (233)
T cd03258 163 LCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVA 212 (233)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999876 3344444 8999999999887666555543
No 80
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.2e-23 Score=178.32 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=105.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------EEcCCCc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------IVDTSNE 162 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------~~~~~~e 162 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++.+...
T Consensus 4 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 4 ISHLYADYGGKP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEeCCee--eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCCcEEEEeCCCc
Confidence 457888886532 58889999999999999999999999999999999988643 332 2222211
Q ss_pred cccCC------C-------CCccc----cc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 163 IGGDG------D-------IPHSA----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 163 i~~~~------~-------~~~~~----~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
+.... . ..... +. ..+....+|+|++||+++++++..+|++||+|||++++|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 10000 0 00000 00 012233469999999999999999999999999999999
Q ss_pred HHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 215 AHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 215 ~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~ 201 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVL 201 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 876 334433 489999999998877776666543
No 81
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.90 E-value=3.9e-23 Score=178.15 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=106.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~ei~~~--- 166 (254)
+.++++++.... .++.+++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+...+...
T Consensus 7 ~~~l~~~~~~~~--vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 7 LENVSVSFGQRR--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPL 84 (251)
T ss_pred EeceEEEECCce--EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccCh
Confidence 457888876533 578889999999999999999999999999999999886432 23344333211100
Q ss_pred ---C---CCCc---ccc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HH
Q 025371 167 ---G---DIPH---SAI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 219 (254)
Q Consensus 167 ---~---~~~~---~~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~ 219 (254)
. ..+. ... + ..+....+|+|++||+++++++..+|+++|+|||++++|... +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 85 TVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLID 164 (251)
T ss_pred hHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 0 0000 000 0 012334579999999999999999999999999999999876 33
Q ss_pred HHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 220 SIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 220 ~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++.+. |.++|+++|+.+....+++.++
T Consensus 165 ~~~~~~g~tiiivsH~~~~i~~~~d~i~ 192 (251)
T PRK09544 165 QLRRELDCAVLMVSHDLHLVMAKTDEVL 192 (251)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 33444 8899999999887766666554
No 82
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.5e-23 Score=169.78 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=105.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe----EEEEcC------------C
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR----VVIVDT------------S 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~----i~~~~~------------~ 160 (254)
+.++++-|+.+. .+++++..++++++++++||+|||||||||++.++.....+.+ |.+..+ +
T Consensus 10 ~~~l~~yYg~~~--aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lR 87 (253)
T COG1117 10 VRDLNLYYGDKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELR 87 (253)
T ss_pred ecceeEEECchh--hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHH
Confidence 457888887654 5889999999999999999999999999999999876543222 222111 0
Q ss_pred CccccCCCCCcc---cc------c-----c--------------------------ccccCCCChhHHHHHHHHHHHccC
Q 025371 161 NEIGGDGDIPHS---AI------G-----T--------------------------ARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 161 ~ei~~~~~~~~~---~~------~-----~--------------------------~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
..++...+.|.+ .+ + . .....-+|||||||.++|||++.+
T Consensus 88 r~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~ 167 (253)
T COG1117 88 RRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVK 167 (253)
T ss_pred HHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcC
Confidence 111111011110 00 0 0 011123599999999999999999
Q ss_pred CCEEEEeCCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCChhhhhhhc
Q 025371 201 PEVIIVDEIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKNPILSDLVC 251 (254)
Q Consensus 201 P~viilDEp~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~~~~~~l~~ 251 (254)
|+||+||||++++|+.+ ++++. ....|++++||...-+..+.+.....+.|
T Consensus 168 PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G 224 (253)
T COG1117 168 PEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLG 224 (253)
T ss_pred CcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhccc
Confidence 99999999999999876 33332 25679999999988888888777664443
No 83
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=3.9e-23 Score=174.78 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=104.1
Q ss_pred EEEEEEEE-CceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------
Q 025371 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------- 156 (254)
Q Consensus 97 ~~~l~ir~-~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------- 156 (254)
+.++++++ ... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+
T Consensus 4 ~~~l~~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 4 FEHVSKAYLGGR--QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG-KIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEeeEEEecCCC--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCChhHHHHHHhh
Confidence 45788887 332 258889999999999999999999999999999999987633 2322
Q ss_pred ---EcCCCccccCC------C-------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 157 ---VDTSNEIGGDG------D-------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 157 ---~~~~~ei~~~~------~-------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+.+...+.... . ..... . + ..+....+|+||+||+++++|+..+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11111110000 0 00000 0 0 012233469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~ 208 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRML 208 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999875 44444568899999999887777766554
No 84
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.8e-23 Score=180.00 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=106.6
Q ss_pred EEEEEEEECce---eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-------------C
Q 025371 97 IVGLTCRVGRA---VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------------S 160 (254)
Q Consensus 97 ~~~l~ir~~~~---~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-------------~ 160 (254)
+.++++.|... ....++++++.|++|++++|+|.+|+|||||+|++.++..|+.| +|++-.+ +
T Consensus 4 l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG-~v~v~G~di~~l~~~~Lr~~R 82 (339)
T COG1135 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG-SVFVDGQDLTALSEAELRQLR 82 (339)
T ss_pred EEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCc-eEEEcCEecccCChHHHHHHH
Confidence 34666666542 23468889999999999999999999999999999999999844 3433221 0
Q ss_pred CccccCCCCCcccccc---------------------------------------ccccCCCChhHHHHHHHHHHHccCC
Q 025371 161 NEIGGDGDIPHSAIGT---------------------------------------ARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 161 ~ei~~~~~~~~~~~~~---------------------------------------~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
..+++. +.|.+... .+....+|||||||++|||||+.+|
T Consensus 83 ~~IGMI--FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 83 QKIGMI--FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred hhccEE--eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 111110 00000000 0112235999999999999999999
Q ss_pred CEEEEeCCCchHHHHH---HH----HHH-hCCceEEEEEchhhHHHHhCChhh
Q 025371 202 EVIIVDEIGTEAEAHA---CR----SIA-ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 202 ~viilDEp~~~ld~~~---~~----~~~-~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+.||+|+.+|+.. +. ++. +-|.|++++||..++.+.+++++.
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhhe
Confidence 9999999999999986 22 222 349999999999999999988864
No 85
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=2.8e-23 Score=175.45 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------I 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------~ 156 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. +
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCee--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCCCCHHHHHhcCeEE
Confidence 457888876532 57889999999999999999999999999999999988643 222 2
Q ss_pred EcCCCccccC----------CCCC-ccc----c-------c-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 157 VDTSNEIGGD----------GDIP-HSA----I-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 157 ~~~~~ei~~~----------~~~~-~~~----~-------~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+.+...+... .... ... . . ..+....+|+|++||+++++++..+|++|++|||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 2111110000 0000 000 0 0 0012223699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYV 204 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEE
Confidence 99999876 444445689999999998876666665543
No 86
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=2.7e-23 Score=186.28 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=105.7
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-------------CC
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------------SN 161 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-------------~~ 161 (254)
+.+++++|... ....++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+-.. ..
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G-~I~i~G~~i~~~~~~~l~~~r~ 82 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG-SVIVDGQDLTTLSNSELTKARR 82 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhc
Confidence 45788888531 12358899999999999999999999999999999999998743 3322110 00
Q ss_pred ccccC----CCCCcccc-----------c----------------------cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 162 EIGGD----GDIPHSAI-----------G----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 162 ei~~~----~~~~~~~~-----------~----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+.+. ..++...+ + ..+....+|+||+||+++||||..+|++|
T Consensus 83 ~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iL 162 (343)
T TIGR02314 83 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 11110 00000000 0 00122346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|||++++|+.. +.++.+. |.|+|+++|+.+....++++++
T Consensus 163 LlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~ 212 (343)
T TIGR02314 163 LCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVA 212 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999876 3444443 8999999999888877776654
No 87
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.90 E-value=3e-23 Score=175.60 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------EEcCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV---------------IVDTSN 161 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~---------------~~~~~~ 161 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++.+..
T Consensus 3 l~~v~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 3 TKNLSKRFGKQT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG-EIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEeEEEEECCEE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEeccccccccEEEEcCCC
Confidence 457888876533 58889999999999999999999999999999999988644 222 222211
Q ss_pred ccccCCCC----------Cc---ccc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 162 EIGGDGDI----------PH---SAI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 162 ei~~~~~~----------~~---~~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
.+...... .. ... + ..+....+|+|++||+++++++..+|+++++|||++++|...
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 11000000 00 000 0 001223469999999999999999999999999999999876
Q ss_pred -------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 218 -------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 -------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.++.+.|.++|+++|+.+....++++++
T Consensus 160 ~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~ 195 (223)
T TIGR03740 160 IQELRELIRSFPEQGITVILSSHILSEVQQLADHIG 195 (223)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE
Confidence 33444568899999999887766656554
No 88
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=4e-23 Score=175.14 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=105.0
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------------e
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------R 153 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------~ 153 (254)
+.++++++.... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|. .
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKE 83 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhcc
Confidence 457888875431 12578899999999999999999999999999999999876331 1
Q ss_pred EEEEcCCCc--cccCC-----------CC-Cc---c--c---------ccc-----ccccCCCChhHHHHHHHHHHHccC
Q 025371 154 VVIVDTSNE--IGGDG-----------DI-PH---S--A---------IGT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 154 i~~~~~~~e--i~~~~-----------~~-~~---~--~---------~~~-----~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
+.++.+... +.... .. .. . . ++. .+....+|+|++||+++++++..+
T Consensus 84 i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (228)
T cd03257 84 IQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALN 163 (228)
T ss_pred EEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcC
Confidence 222222221 00000 00 00 0 0 000 012234699999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++||+|||++++|... +.++.+. |.++|+++|+.+....+.++++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 218 (228)
T cd03257 164 PKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV 218 (228)
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence 99999999999999876 3444444 88999999998877766666543
No 89
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.90 E-value=3.9e-23 Score=172.67 Aligned_cols=144 Identities=16% Similarity=0.224 Sum_probs=101.3
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--------------Ccc
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------------NEI 163 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~--------------~ei 163 (254)
.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+.+.. ..+
T Consensus 2 ~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 2 KNISKKFGDKI--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG-QVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred cceEEEECCEE--EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccchhhHHHHHHhCe
Confidence 46778776533 58899999999999999999999999999999999988643 33221110 001
Q ss_pred ccCC----CCCcccc-----------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 164 GGDG----DIPHSAI-----------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 164 ~~~~----~~~~~~~-----------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
.+.. .++...+ + ..+....+|+|++||+++++||..+|+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1100 0000000 0 0122334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|... +.++.+.|.++|+++|..+..+. ++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~-~d~i 203 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQ-ADRV 203 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEE
Confidence 99999999876 33444568999999999876654 4443
No 90
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.3e-23 Score=187.10 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=105.1
Q ss_pred EEEEEEEEC--ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------
Q 025371 97 IVGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~--~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------- 155 (254)
+.+++++|+ ......++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~ 82 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG-RVLVDGQDLTALSEKELRKARR 82 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHhc
Confidence 458888886 2112358899999999999999999999999999999999988633 222
Q ss_pred ---EEcCCCccccCCC-------------CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 156 ---IVDTSNEIGGDGD-------------IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 156 ---~~~~~~ei~~~~~-------------~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
++.+...+..... .+.... + ..+....+|+||+||+++++||..+|++|
T Consensus 83 ~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iL 162 (343)
T PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162 (343)
T ss_pred CEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2222111100000 000000 0 00222346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+|||++++|... +.++.+ .|.|+|+++|+.+....++++++.
T Consensus 163 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~ 213 (343)
T PRK11153 163 LCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV 213 (343)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999876 334433 489999999998877766666543
No 91
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.90 E-value=4.7e-23 Score=185.59 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=105.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------EEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-----------------~~~~ 159 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++.+
T Consensus 5 i~~l~~~~~~~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 5 IANIKKSFGRTQ--VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEeCCeE--EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHCCEEEEec
Confidence 468888886543 58889999999999999999999999999999999988743 332 2222
Q ss_pred CCccccCCCCCcccc-----------------c--------------------cccccCCCChhHHHHHHHHHHHccCCC
Q 025371 160 SNEIGGDGDIPHSAI-----------------G--------------------TARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 160 ~~ei~~~~~~~~~~~-----------------~--------------------~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
...+ +|+..+ . ..+....+|+||+||+++++||..+|+
T Consensus 82 ~~~l-----~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 82 HYAL-----FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred Cccc-----CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111 111000 0 012223469999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|++|||++++|... +.++.++ |.|+|++||+.+.+..++++++.
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v 209 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV 209 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999876 3444444 88999999998877777666543
No 92
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.90 E-value=3.5e-23 Score=176.50 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=105.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++++... .++.+++.+++|++++|+||||||||||+++|+|+++|..|. .+.++
T Consensus 3 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 3 VRGLTKRFGGLV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeeEEEECCEE--EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 457888886532 588899999999999999999999999999999999876432 12222
Q ss_pred cCCCccccC----------CCCC-c------------cc----cc-----------cccccCCCChhHHHHHHHHHHHcc
Q 025371 158 DTSNEIGGD----------GDIP-H------------SA----IG-----------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 158 ~~~~ei~~~----------~~~~-~------------~~----~~-----------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+...+... .... . .. .. ..+....+|+|++||+++++|+..
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 221111000 0000 0 00 00 001223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|++||+|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~ 215 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTV 215 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 999999999999999876 444445689999999998877776666543
No 93
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.90 E-value=4.1e-23 Score=174.45 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=101.5
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------- 152 (254)
+.++++++.... ...++.+++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNK 83 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHh
Confidence 457788775311 12578889999999999999999999999999999999876332
Q ss_pred eEEEEcCCCccccCC-------------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 153 RVVIVDTSNEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 153 ~i~~~~~~~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
++.++.+...+.... ...... . + ..+....+|+|++||+++++++..+|++|
T Consensus 84 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 163 (221)
T TIGR02211 84 KLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLV 163 (221)
T ss_pred cEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 122222211110000 000000 0 0 00222346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|+|||++++|... +.++.. .|.++|+++|+.+..+.+ +.+
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~-d~v 211 (221)
T TIGR02211 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRV 211 (221)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc-CEE
Confidence 9999999999876 334433 488999999998776655 444
No 94
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.90 E-value=6e-23 Score=171.26 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=102.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---------CccccCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGDG 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------~ei~~~~ 167 (254)
+.++++++.... .++++++.+++|++++|+|+||||||||+++|+|+++|+.| .+.+.+.. ..+.+..
T Consensus 3 i~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRA--LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCce--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccccHHhhhheEEec
Confidence 457888876543 48899999999999999999999999999999999988643 33221100 0011100
Q ss_pred ----CCCcccc-----------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 168 ----DIPHSAI-----------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 168 ----~~~~~~~-----------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
..+.... + ..+....+|+|++||+++++++..+|++||+|||++++|..
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 0000000 0 01223346999999999999999999999999999999987
Q ss_pred H-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 217 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 217 ~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
. +.++.+.|.++|+++|+......++.+++.
T Consensus 160 ~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 160 GVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEe
Confidence 6 334445688999999985544445555543
No 95
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4e-23 Score=176.00 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=101.8
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------- 152 (254)
+.++++++.... ...++.+++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 87 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQ 87 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhc
Confidence 457888775321 23588899999999999999999999999999999999876331
Q ss_pred eEEEEcCCCccccCCC-------------CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 153 RVVIVDTSNEIGGDGD-------------IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 153 ~i~~~~~~~ei~~~~~-------------~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+.++.+...+..... ...... + ..+....+|+|++||+++++++..+|++|
T Consensus 88 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 167 (233)
T PRK11629 88 KLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLV 167 (233)
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222222211100000 000000 0 00122346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhC
Q 025371 205 IVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~ 242 (254)
|+|||++++|... +.++.+ .|.++|+++|+.+....++
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~ 213 (233)
T PRK11629 168 LADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS 213 (233)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhC
Confidence 9999999999876 334433 4899999999988777665
No 96
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.4e-23 Score=167.73 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=111.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD------------------ 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~------------------ 158 (254)
..+++++...+.. ++.+++.+.+||..+|+||||+|||||||+|+|.+.|+.| .+.+.+
T Consensus 4 a~nls~~~~Gr~l--l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G-~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 4 AENLSYSLAGRRL--LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSG-EVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeEEEeeccee--ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCC-eEeeCCcChhhCCHHHHHHHhhhc
Confidence 3578887765544 8899999999999999999999999999999999998733 333222
Q ss_pred -CCCccccC---------CCCCccccc---------------------cccccCCCChhHHHHHHHHHHHcc------CC
Q 025371 159 -TSNEIGGD---------GDIPHSAIG---------------------TARRMQVPEPSLQHKVMIEAVENH------MP 201 (254)
Q Consensus 159 -~~~ei~~~---------~~~~~~~~~---------------------~~~~~~~~s~g~~~~~~l~~al~~------~P 201 (254)
+...+.|. +..|+..-. ..+.+..+|||++||+.++|+|.+ .+
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 22222221 122221100 013445679999999999999984 45
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++++|||++.+|+.. +++++..|..|+.+.|+.+++..++|+++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivl 213 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVL 213 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeee
Confidence 6999999999999864 677788899999999999999999888765
No 97
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=4.9e-23 Score=172.13 Aligned_cols=148 Identities=20% Similarity=0.174 Sum_probs=106.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---------CccccCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGDG 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------~ei~~~~ 167 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+-+.. ..+.+..
T Consensus 4 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERI--LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG-EVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEE--EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccchHHhhhheEEeC
Confidence 457888886543 58899999999999999999999999999999999998743 33221100 0010000
Q ss_pred ----CCCcccc-----------c-------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 168 ----DIPHSAI-----------G-------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 168 ----~~~~~~~-----------~-------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
..+.... . ..+....+|+|++||+++++|+..+|+++++|||++++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 0000000 0 01223346999999999999999999999999999999
Q ss_pred HHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 214 EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 214 d~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|... +.++.+.|.++|+++|+.+..+.+..+++.
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~ 201 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLR 201 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEe
Confidence 9876 333445688999999998888887765543
No 98
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.9e-23 Score=176.90 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------I 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------~ 156 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|+++|+.| .+. +
T Consensus 6 ~~~l~~~~~~~~--~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 6 AKNLAKAYKGRR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG-NIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EeCcEEEeCCEE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHHhCeEE
Confidence 457888876533 58899999999999999999999999999999999987643 222 2
Q ss_pred EcCCCccccCC------CCC---cccc----------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 157 VDTSNEIGGDG------DIP---HSAI----------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 157 ~~~~~ei~~~~------~~~---~~~~----------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+.+...+.... ... .... + ..+....+|+|++||+++++++..+|++||+|
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22211110000 000 0000 0 00223346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~ 208 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY 208 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE
Confidence 9999999876 33444568999999999866665655543
No 99
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.89 E-value=3.4e-23 Score=183.12 Aligned_cols=135 Identities=22% Similarity=0.242 Sum_probs=97.8
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---------CccccCC----CCCcccc---
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGDG----DIPHSAI--- 174 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------~ei~~~~----~~~~~~~--- 174 (254)
.++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+.... ..+++.. ..+....
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 47888899999999999999999999999999999988743 33221100 0111110 0000000
Q ss_pred --------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------
Q 025371 175 --------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 217 (254)
Q Consensus 175 --------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~------- 217 (254)
+ ..+....+|+||+||+++++|+..+|++||+|||++++|+..
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 166 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 0 012333469999999999999999999999999999999876
Q ss_pred HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 218 CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 ~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.++.+.|.++|+++|+.+....++++++
T Consensus 167 l~~~~~~g~tvi~~sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 167 IRALKEEGVTILLTTHYMEEADKLCDRIA 195 (302)
T ss_pred HHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 44445568999999999887777666654
No 100
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.89 E-value=8.2e-23 Score=173.66 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=104.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----------Ccccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGG 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----------~ei~~ 165 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|..| .+.+.+.. ..+.+
T Consensus 3 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeE--EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHHhCeEE
Confidence 457888886543 58899999999999999999999999999999999988643 22221100 00111
Q ss_pred CC----CCCcccc-------------------c------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 166 DG----DIPHSAI-------------------G------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 166 ~~----~~~~~~~-------------------~------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
.. .++...+ . ..+....+|+|++||+++++++..+|+++|+|||+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 00 0000000 0 00122236999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 211 TEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++|... +.++.+. |.|+|+++|+.+....++++++.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~ 204 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV 204 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEE
Confidence 9999876 3344443 88999999998877766665543
No 101
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.89 E-value=7.1e-23 Score=170.71 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=104.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCCCCeEEEEcCC-C----------cc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVDTS-N----------EI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~~~~i~~~~~~-~----------ei 163 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|+. .|+ .+++.+.+.. . .+
T Consensus 3 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEE--eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEECCcCCHHHHhhCcE
Confidence 457888886532 588999999999999999999999999999999994 555 3344332111 0 01
Q ss_pred ccCCCCCccc-------ccc-cccc-CCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCce
Q 025371 164 GGDGDIPHSA-------IGT-ARRM-QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVM 227 (254)
Q Consensus 164 ~~~~~~~~~~-------~~~-~~~~-~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~ 227 (254)
.+ +++.. ... .... ..+|+|++||+++++++..+|+++++|||++++|... +.++.+.|.+
T Consensus 80 ~~---v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~t 156 (200)
T cd03217 80 FL---AFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156 (200)
T ss_pred EE---eecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence 11 11111 000 1223 4689999999999999999999999999999999876 3344456889
Q ss_pred EEEEEchhhHHHH-hCChhh
Q 025371 228 LIGTAHGEWLENI-IKNPIL 246 (254)
Q Consensus 228 vi~t~H~~~~~~~-~~~~~~ 246 (254)
+|+++|+.+.... +.++++
T Consensus 157 iii~sh~~~~~~~~~~d~i~ 176 (200)
T cd03217 157 VLIITHYQRLLDYIKPDRVH 176 (200)
T ss_pred EEEEecCHHHHHHhhCCEEE
Confidence 9999999887775 455543
No 102
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.89 E-value=5.3e-23 Score=176.91 Aligned_cols=147 Identities=17% Similarity=0.187 Sum_probs=103.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|+++++.| .+.
T Consensus 6 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 6 VKNLVKKFHGQT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG-TIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EeceEEEECCee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccccccchhhHHHH
Confidence 457888886532 58899999999999999999999999999999999987633 222
Q ss_pred ------EEcCCCccccCCC-----------CCccc-------c-------c----cccccCCCChhHHHHHHHHHHHccC
Q 025371 156 ------IVDTSNEIGGDGD-----------IPHSA-------I-------G----TARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 156 ------~~~~~~ei~~~~~-----------~~~~~-------~-------~----~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
++.+...+..... ..... . + ..+....+|+|++||+++++++..+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 1111111000000 00000 0 0 0012234699999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++||+|||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~ 215 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999876 33444568999999999887766655543
No 103
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.1e-23 Score=180.80 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=105.1
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------------- 152 (254)
+.+++++|.... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 83 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR 83 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHH
Confidence 468888886422 13688999999999999999999999999999999999886432
Q ss_pred -eEEEEcCCC--ccccC--------C----CCCcccc-----------cc-----ccccCCCChhHHHHHHHHHHHccCC
Q 025371 153 -RVVIVDTSN--EIGGD--------G----DIPHSAI-----------GT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 153 -~i~~~~~~~--ei~~~--------~----~~~~~~~-----------~~-----~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
++.++.+.. .+... . ..+.... +. .+....+|+|++||++++++|.++|
T Consensus 84 ~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p 163 (288)
T PRK13643 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP 163 (288)
T ss_pred hhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence 112222211 00000 0 0000000 00 1222346999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++||+|||++++|+.+ +.++.+.|.|+|+++|+.+....++++++
T Consensus 164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999876 33444568999999999887766556554
No 104
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.89 E-value=5.1e-23 Score=181.89 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=104.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~ 158 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++.
T Consensus 5 ~~~l~~~~~~~~--~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 5 VSSLTKLYGTQN--ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEECCEE--EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccChHHHHhceEEec
Confidence 568888887543 58899999999999999999999999999999999998743 222 222
Q ss_pred CCCccccC----------C---CCCcc----cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGD----------G---DIPHS----AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~----------~---~~~~~----~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+... . ..+.. .. + ..+....+|+|++||+++++|+..+|+++|+|||+
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 21111100 0 00000 00 0 01233446999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+++|+.. +.++. .+.++|+++|..+....++++++
T Consensus 162 ~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~ 203 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVI 203 (301)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEE
Confidence 9999886 33333 47899999999886666656554
No 105
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.3e-23 Score=175.85 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=104.0
Q ss_pred EEEEEEEECc-eeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------
Q 025371 97 IVGLTCRVGR-AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~-~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------- 155 (254)
+.++++++.. .. .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.
T Consensus 3 ~~~l~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKK--ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG-SVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccE--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEeccccCHhHHHHHHhc
Confidence 4578888764 22 48889999999999999999999999999999999987633 222
Q ss_pred --EEcCCCccccCCC------CC---------------ccc----c-------c----cccccCCCChhHHHHHHHHHHH
Q 025371 156 --IVDTSNEIGGDGD------IP---------------HSA----I-------G----TARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 156 --~~~~~~ei~~~~~------~~---------------~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al 197 (254)
++.+...+..... .. ... . + ..+....+|+|++||+++++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 2211111100000 00 000 0 0 0012234699999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
..+|+++|+|||++++|... +.++.+ .|.++|+++|+.+....+++.++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~ 217 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG 217 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999876 344444 489999999998877766666543
No 106
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=3.1e-23 Score=175.89 Aligned_cols=147 Identities=18% Similarity=0.262 Sum_probs=104.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----CccccCCC---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----NEIGGDGD--- 168 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----~ei~~~~~--- 168 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+.... ....+...
T Consensus 25 ~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~tv 101 (224)
T cd03220 25 ILGRKGEVGEFW--ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPELTG 101 (224)
T ss_pred hhhhhhhcCCeE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCCCcH
Confidence 346777777654 48899999999999999999999999999999999988643 33321110 00000000
Q ss_pred ------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH----
Q 025371 169 ------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 217 (254)
Q Consensus 169 ------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---- 217 (254)
..... . + ..+....+|+|++||+++++++..+|++||+|||++++|..+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 00000 0 0 012334569999999999999999999999999999999875
Q ss_pred ---HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 218 ---CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 ---~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.++.+.|.++|+++|+.+....+.++++
T Consensus 182 ~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~ 213 (224)
T cd03220 182 QRRLRELLKQGKTVILVSHDPSSIKRLCDRAL 213 (224)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 34444568899999999877766666543
No 107
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=4.8e-23 Score=179.78 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=104.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.++++++.... ..++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 7 ~~~l~~~~~~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 85 (274)
T PRK13647 7 VEDLHFRYKDGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVF 85 (274)
T ss_pred EEEEEEEeCCCC-eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEe
Confidence 567888885321 2588999999999999999999999999999999999886432 122222
Q ss_pred CCCc--cccC------C------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 159 TSNE--IGGD------G------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 159 ~~~e--i~~~------~------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+... +... . ...... . + ..+....+|+|++||+++++||..+|++||+|||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 2210 0000 0 000000 0 0 0122334699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|+.. +.++.+.|.|+|+++|+.+....++++++
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~ 209 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVI 209 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999876 44445568999999999887766666554
No 108
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.2e-23 Score=186.17 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=104.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------EEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-----------------~~~~ 159 (254)
+.+++++++... .++++++.+++|++++|+|||||||||||++|+|+.+|+.| .|. ++.+
T Consensus 22 l~~v~~~~~~~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 22 IRNLTKSFDGQH--AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEeEEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEeC
Confidence 457777776532 47888999999999999999999999999999999988633 222 2222
Q ss_pred CCccccCCCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 160 SNEIGGDGDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 160 ~~ei~~~~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
... .+|+..+. ..+....+|+||+||++|+|||..+|++|+|
T Consensus 99 ~~~-----lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLL 173 (377)
T PRK11607 99 SYA-----LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL 173 (377)
T ss_pred CCc-----cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 211 11221100 0122234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.+ .|.|+|++||+.+....+.++++
T Consensus 174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~ 221 (377)
T PRK11607 174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIA 221 (377)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 99999999876 233333 58999999999887666666654
No 109
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.7e-23 Score=180.43 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=106.2
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------------- 152 (254)
+.+++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 467888886321 23588999999999999999999999999999999999986432
Q ss_pred -eEEEEcCCCc--cccC------C------CCCccc-----------cc-----cccccCCCChhHHHHHHHHHHHccCC
Q 025371 153 -RVVIVDTSNE--IGGD------G------DIPHSA-----------IG-----TARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 153 -~i~~~~~~~e--i~~~------~------~~~~~~-----------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
.+.++.+... +... . ...... ++ ..+....+|+||+||+++++|+..+|
T Consensus 85 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p 164 (287)
T PRK13641 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164 (287)
T ss_pred hceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1122222110 0000 0 000000 00 01223456999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++||+|||++++|... +.++.+.|.|+|+++|+.+....++++++.
T Consensus 165 ~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~ 217 (287)
T PRK13641 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLV 217 (287)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999876 444445689999999998877766666543
No 110
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.89 E-value=7.7e-23 Score=176.79 Aligned_cols=147 Identities=19% Similarity=0.228 Sum_probs=105.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|+++++.| .+.
T Consensus 8 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 8 VIDLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-SIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred EeeeEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccccccccccccccc
Confidence 457888886543 48889999999999999999999999999999999987643 222
Q ss_pred -----------EEcCCCccccCC----C--C--------Ccc----cc-------cc-----ccccCCCChhHHHHHHHH
Q 025371 156 -----------IVDTSNEIGGDG----D--I--------PHS----AI-------GT-----ARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 156 -----------~~~~~~ei~~~~----~--~--------~~~----~~-------~~-----~~~~~~~s~g~~~~~~l~ 194 (254)
++.+...+.... . . ... .. +. .+....+|+|++||++++
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 111111100000 0 0 000 00 00 122334699999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+..+|++||+|||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999876 33445568999999999888777666554
No 111
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=8.5e-23 Score=171.93 Aligned_cols=148 Identities=15% Similarity=0.165 Sum_probs=104.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe---------------EEEEcCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR---------------VVIVDTSN 161 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~---------------i~~~~~~~ 161 (254)
+.++++++.... .++.+++.+.+|++++|+|+||||||||+++|+|+++++.|.- +.++.+..
T Consensus 14 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 14 AHALAFSRNEEP--VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred EeeEEEecCCce--eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCc
Confidence 457777775432 5889999999999999999999999999999999998864321 22222211
Q ss_pred ccccCCCC----------Cccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 162 EIGGDGDI----------PHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 162 ei~~~~~~----------~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
.+...... .... . + .......+|+|++|++++++++..+|+++++|||++++|..
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11000000 0000 0 0 01222346999999999999999999999999999999987
Q ss_pred H-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 217 A-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 217 ~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
. +.++.++|.++|+++|+.+....++++++
T Consensus 172 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 172 GITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence 6 33445568899999999877766666543
No 112
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=5.9e-23 Score=180.58 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=106.1
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------------- 152 (254)
+.+++++|.... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR 84 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence 468888886421 23688999999999999999999999999999999999886432
Q ss_pred -eEEEEcCCC--ccccC--------C----CCCccc-----------cc-----cccccCCCChhHHHHHHHHHHHccCC
Q 025371 153 -RVVIVDTSN--EIGGD--------G----DIPHSA-----------IG-----TARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 153 -~i~~~~~~~--ei~~~--------~----~~~~~~-----------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
++.++.+.. .+... . ...... ++ ..+....+|+||+||++++++|..+|
T Consensus 85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P 164 (290)
T PRK13634 85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP 164 (290)
T ss_pred hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 122222211 00000 0 000000 00 01223446999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++||+|||++++|... +.++.+ .|.|+|+++|+.+....+.++++.
T Consensus 165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~ 218 (290)
T PRK13634 165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV 218 (290)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999876 334434 489999999998877766666544
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.89 E-value=6.5e-23 Score=174.06 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=101.7
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------- 152 (254)
+.++++++.... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.|.
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 88 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAK 88 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhh
Confidence 457777775421 12588899999999999999999999999999999999876332
Q ss_pred eEEEEcCCCccccCC-------------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 153 RVVIVDTSNEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 153 ~i~~~~~~~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+.++.+...+.... ...... . + ..+....+|+|++||+++++++..+|+++
T Consensus 89 ~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ll 168 (228)
T PRK10584 89 HVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVL 168 (228)
T ss_pred eEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 122222211110000 000000 0 0 01223346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|+|||++++|... +.++.+. |.++|+++|+.+..+. .+.+
T Consensus 169 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i 216 (228)
T PRK10584 169 FADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRR 216 (228)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEE
Confidence 9999999999876 3344343 8899999999877765 4444
No 114
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.89 E-value=1e-22 Score=173.87 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=102.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~ 158 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++.
T Consensus 4 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 4 VAGLSFAYGARR--ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG-QISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcccCChhhhhhEEEeC
Confidence 457888876543 58889999999999999999999999999999999988643 222 222
Q ss_pred CCCccccCC----------CCCcc---cc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGDG----------DIPHS---AI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~~----------~~~~~---~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+.... ..... .. + ..+....+|+|++||+++++++..+|+++|+|||+
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 211110000 00000 00 0 00222346999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+++|... +.++.+ .|.++|+++|+.+.... +++++
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~ 203 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLV 203 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEE
Confidence 9999876 334443 58899999999877765 55443
No 115
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=8.9e-23 Score=174.82 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++
T Consensus 6 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 6 FKEVSYSSFGKE--ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEeEEEEeCCee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHHhhhcEEEE
Confidence 457888876532 58889999999999999999999999999999999987643 222 22
Q ss_pred cCCCccccC---------CCCCcc---c-------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 158 DTSNEIGGD---------GDIPHS---A-------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 158 ~~~~ei~~~---------~~~~~~---~-------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
.+...+... ...... . ++ ..+....+|+|++||+++++|+..+|++||+|||++++
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 222111000 000000 0 00 01223457999999999999999999999999999999
Q ss_pred HHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 214 EAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 214 d~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|... +.++.+ .|.++|+++|+.+....++++++
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~ 203 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA 203 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEE
Confidence 9876 334444 48999999999887766666554
No 116
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.3e-23 Score=175.32 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=104.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++.... .++++++.+++|++++|+||||||||||+++|+|+++++.| +|.+
T Consensus 5 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 5 LNGINCFYGAHQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEeeEEEECCee--eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecccccccchhhHHHHH
Confidence 457888886533 58899999999999999999999999999999999987643 2322
Q ss_pred -----EcCCCccccCCC--------------CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCC
Q 025371 157 -----VDTSNEIGGDGD--------------IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 157 -----~~~~~ei~~~~~--------------~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
+.+...+..... ...... + ..+....+|+|++||+++++++..+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 211111100000 000000 0 011223469999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+|||++++|... +.++.++|.++|+++|+.+....+.++++
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~ 212 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999876 33444568999999999887766555543
No 117
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.4e-23 Score=180.10 Aligned_cols=150 Identities=18% Similarity=0.230 Sum_probs=105.0
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC--------------------e
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------R 153 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------------~ 153 (254)
+.+++++|+... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.|. +
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhc
Confidence 457888886421 13688999999999999999999999999999999999886432 1
Q ss_pred EEEEcCCCcccc-CC-------------CCCccc-----------ccc------ccccCCCChhHHHHHHHHHHHccCCC
Q 025371 154 VVIVDTSNEIGG-DG-------------DIPHSA-----------IGT------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 154 i~~~~~~~ei~~-~~-------------~~~~~~-----------~~~------~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
+.++.+...... .. ...... ++. .+....+|+||+||+++++||..+|+
T Consensus 85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~ 164 (287)
T PRK13637 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164 (287)
T ss_pred eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 222222211000 00 000000 000 11233469999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+||+|||++++|+.. +.++.+. |.|+|+++|+.+....++++++
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999876 3444444 8999999999877766555554
No 118
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.89 E-value=1.1e-22 Score=171.73 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=103.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~ 158 (254)
+.++++++.......++++++.+++|++++|+||||||||||+++|+|+++|+.| .+. ++.
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccchHHHhhhEEEec
Confidence 4578888754111258899999999999999999999999999999999988643 222 222
Q ss_pred CCCccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+..... .+... . + ..+....+|+|++||+++++++..+|++||+|||+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 2111100000 00000 0 0 00122346999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++|... +.++. .+.++|+++|+.+....++++++.
T Consensus 162 ~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~ 204 (220)
T cd03263 162 SGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAI 204 (220)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhcCEEEE
Confidence 9999876 33333 368999999998877666665543
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.89 E-value=1.2e-22 Score=175.74 Aligned_cols=147 Identities=24% Similarity=0.335 Sum_probs=104.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++
T Consensus 5 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 5 ARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG-EVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEeEEEEeCCee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcccCCHHHhhhheEEE
Confidence 457888886543 58899999999999999999999999999999999987643 222 22
Q ss_pred cCCCccccC---------CCCCc-c-------cc-------c----cccccCCCChhHHHHHHHHHHHc------cCCCE
Q 025371 158 DTSNEIGGD---------GDIPH-S-------AI-------G----TARRMQVPEPSLQHKVMIEAVEN------HMPEV 203 (254)
Q Consensus 158 ~~~~ei~~~---------~~~~~-~-------~~-------~----~~~~~~~~s~g~~~~~~l~~al~------~~P~v 203 (254)
.+...+... ..... . .. + ..+....+|+|++||+++++++. .+|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 221111000 00000 0 00 0 01223346999999999999999 59999
Q ss_pred EEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++|||++++|... +.++. +.|.++|+++|+.+....++++++
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEE
Confidence 99999999999876 44454 568999999999887776666554
No 120
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.89 E-value=8e-23 Score=175.04 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=103.1
Q ss_pred EEEEEEEEC-ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------
Q 025371 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~-~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------- 155 (254)
+.++++++. .. ..++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.
T Consensus 4 ~~~l~~~~~~~~--~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGK--QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG-SILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCc--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc-EEEECCEEhhhCCHHHHHHHHhh
Confidence 457788775 32 258899999999999999999999999999999999987633 222
Q ss_pred --EEcCCCccccC------CCCC----------------ccc---c-------c----cccccCCCChhHHHHHHHHHHH
Q 025371 156 --IVDTSNEIGGD------GDIP----------------HSA---I-------G----TARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 156 --~~~~~~ei~~~------~~~~----------------~~~---~-------~----~~~~~~~~s~g~~~~~~l~~al 197 (254)
++.+...+... .... ... . + ..+....+|+|++||+++++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 22211111000 0000 000 0 0 0122234699999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|++||+|||++++|... +.++.+ .|.++|+++|+.+....+++.++
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~ 217 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV 217 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 99999999999999999876 334444 48899999999887766655544
No 121
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=1e-22 Score=169.70 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---------CccccCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------NEIGGDG 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------~ei~~~~ 167 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+.+|+.| ++.+-... ..+.+..
T Consensus 4 ~~~l~~~~~~~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQP--LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCee--EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHHhheEEec
Confidence 467888876533 58899999999999999999999999999999999988644 33221110 0011000
Q ss_pred ----CCCcccc------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHH
Q 025371 168 ----DIPHSAI------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (254)
Q Consensus 168 ----~~~~~~~------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~ 215 (254)
..+...+ . ..+....+|+|++||+++++++..+|+++|+|||++++|.
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 0000000 0 0122234699999999999999999999999999999998
Q ss_pred HH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 216 HA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 216 ~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
.. +.++.+.|.++|+++|.....+.++-.+
T Consensus 161 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 161 LSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 76 3344456899999999988776655443
No 122
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.6e-22 Score=169.74 Aligned_cols=147 Identities=16% Similarity=0.137 Sum_probs=102.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.++++++.... .++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+.
T Consensus 3 ~~~l~~~~~~~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 3 LDKIRFSYGEQP----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred EEeEEEEeCCEe----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 457888886532 2788889999999999999999999999999999886432 12233222
Q ss_pred CccccC---------CCCCccc--------c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGD---------GDIPHSA--------I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~---------~~~~~~~--------~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+... ....... . + ..+....+|+|++||+++++++..+|+++|+|||+++
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 111100 0000000 0 0 0122335699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.+ .|.++|+++|+.+....+.++++.
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 201 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF 201 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEE
Confidence 99876 334433 489999999998877666565543
No 123
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=1.5e-22 Score=173.21 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=104.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.
T Consensus 4 ~~~l~~~~~~~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 4 FKNVSKHFGPTQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG-DLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEeEEEEECCeE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCChhHHHHhhceE
Confidence 457888876432 58889999999999999999999999999999999987633 222
Q ss_pred EEcCCCccccCCC------CCc---ccc----------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 156 IVDTSNEIGGDGD------IPH---SAI----------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 156 ~~~~~~ei~~~~~------~~~---~~~----------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++.+...+..... ... ... + ..+....+|+|++||+++++++..+|+++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2221111100000 000 000 0 0022234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 208 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIF 208 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999876 334445689999999998877766665543
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.4e-23 Score=179.54 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=100.4
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------------- 155 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~----------------------- 155 (254)
+++++++... .++++++.+++|++++|+||||||||||+++|+|+++|..| .+.
T Consensus 29 ~~~~~~~~~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 29 EILKKTGQTV--GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhcCCce--EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccChhhhhhhhcCcEE
Confidence 4555555433 37888899999999999999999999999999999987633 222
Q ss_pred EEcCCCccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 156 IVDTSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 156 ~~~~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
++.+...+..... ..... . + ..+....+|+||+||+++++|+..+|++||+|
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 2221111100000 00000 0 0 01222346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|... +.++.. .|.++|+++|+.+....+++.++
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 9999999876 334443 38899999999877666666554
No 125
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9.9e-23 Score=178.83 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=105.1
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------ 155 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------ 155 (254)
+.+++++|.... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~ 83 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDKYIRPV 83 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHH
Confidence 468888885321 2368899999999999999999999999999999999988743 222
Q ss_pred -----EEcCCCc--ccc-C-------C----CCCccc-----------ccc-----ccccCCCChhHHHHHHHHHHHccC
Q 025371 156 -----IVDTSNE--IGG-D-------G----DIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 156 -----~~~~~~e--i~~-~-------~----~~~~~~-----------~~~-----~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
++.+..+ +.. . . ...... ++. .+....+|+|++||+++++||..+
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred HhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 2222110 000 0 0 000000 000 022344699999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++||+|||++++|+.+ +.++.+ .|.|+|+++|+.+....+.++++.
T Consensus 164 p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~ 218 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIV 218 (286)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999999999876 334443 489999999998876655555543
No 126
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-22 Score=174.10 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++
T Consensus 3 ~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 3 FENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHhhcceEEE
Confidence 45788887652 1257889999999999999999999999999999999987633 222 22
Q ss_pred cCCCccccCCC-------------CCcc----c-------ccc------ccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 158 DTSNEIGGDGD-------------IPHS----A-------IGT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 158 ~~~~ei~~~~~-------------~~~~----~-------~~~------~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
.+...+..... .... . ++. .+....+|+|++||+++++++..+|++||+|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 22111110000 0000 0 000 0122346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|..+ +.++.+ .|.++|+++|+.+....+.++++
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~ 207 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA 207 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999876 334444 38999999999886666656554
No 127
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2e-22 Score=169.09 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=102.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE------------------Ec
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------VD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------~~ 158 (254)
+.++++++.... .++++++.+++| +++|+||||||||||+++|+|+++|+.| .+.+ +.
T Consensus 3 ~~~~~~~~~~~~--~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEECCEE--EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccccchHHHHhheEEec
Confidence 457888886543 588999999999 9999999999999999999999987633 3322 22
Q ss_pred CCCccccCCC-------------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGDGD-------------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~~~-------------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+..... ..... . + .......+|+|++||+++++|+..+|++||+|||+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111100000 00000 0 0 00222346999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+++|... +.++.+ +.|+|+++|+.+....+.++++
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~ 200 (211)
T cd03264 159 AGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVA 200 (211)
T ss_pred ccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEE
Confidence 9999876 333333 6899999999887766666554
No 128
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.3e-22 Score=168.17 Aligned_cols=149 Identities=16% Similarity=0.190 Sum_probs=101.0
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--cCCCCeEEEEcCC------CccccC
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVIVDTS------NEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~~~~~~i~~~~~~------~ei~~~ 166 (254)
+.++++++... ....++++++.+++|++++|+||||||||||+++|+|+.. ++ .+.+.+-+.. ..+.+.
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~-~G~i~~~g~~~~~~~~~~i~~~ 84 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI-TGEILINGRPLDKNFQRSTGYV 84 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc-ceEEEECCEehHHHhhhceEEe
Confidence 45777877531 1225788899999999999999999999999999999863 44 3333321111 112111
Q ss_pred CC----CCccccccc----cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEE
Q 025371 167 GD----IPHSAIGTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGT 231 (254)
Q Consensus 167 ~~----~~~~~~~~~----~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t 231 (254)
.. ++....... .....+|+|++||+++++|+..+|+++++|||++++|... +.++.+.|.++|++
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiiv 164 (192)
T cd03232 85 EQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164 (192)
T ss_pred cccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 11 111111000 0112689999999999999999999999999999999876 34444568999999
Q ss_pred EchhhH-HHHhCChhh
Q 025371 232 AHGEWL-ENIIKNPIL 246 (254)
Q Consensus 232 ~H~~~~-~~~~~~~~~ 246 (254)
+|+.+. ...+.++++
T Consensus 165 tH~~~~~~~~~~d~i~ 180 (192)
T cd03232 165 IHQPSASIFEKFDRLL 180 (192)
T ss_pred EcCChHHHHhhCCEEE
Confidence 999763 344445543
No 129
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.89 E-value=1.4e-22 Score=176.42 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=102.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------------eEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------RVV 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------~i~ 155 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.
T Consensus 10 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 10 MRGVSFTRGNRC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred EeCeEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEE
Confidence 457888876533 478899999999999999999999999999999999876332 112
Q ss_pred EEcCCCccccCCC--------------CCcc----c-------cc----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 156 IVDTSNEIGGDGD--------------IPHS----A-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 156 ~~~~~~ei~~~~~--------------~~~~----~-------~~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++.+...+..... .... . ++ ..+....+|+||+||+++++++..+|++||+
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 167 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2222111100000 0000 0 00 0012234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|..+ +.++.+. |.++|+++|+.+....++++++
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~ 215 (269)
T PRK11831 168 DEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY 215 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEE
Confidence 99999999876 3344343 8899999999766655555543
No 130
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.7e-22 Score=174.45 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=104.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++++... .++++++.+++|++++|+|+||||||||+++|+|+++++.|. .+.++.
T Consensus 5 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 5 TENLTVGYGTKR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred EEeEEEEECCEE--EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 457888886543 588999999999999999999999999999999999876432 122222
Q ss_pred CCCccccC---------CC------CC---cc---cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------GD------IP---HS---AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~~------~~---~~---~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... .. .. .. .. + ..+....+|+|++||+++++|+..+|+++|+
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 162 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLL 162 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111100 00 00 00 00 0 0122334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++...|.++|+++|+.+....+.++++
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~ 209 (255)
T PRK11231 163 DEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLV 209 (255)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEE
Confidence 99999999876 33444568999999999887666555543
No 131
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.2e-22 Score=173.54 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++... ..++.+++.+++|++++|+||||||||||+++|+|+++|+.| .+.+
T Consensus 8 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 8 FDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG-RIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEeEEEeeCCc--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEecCCCCHHHHHHhCEEE
Confidence 45788887643 258889999999999999999999999999999999987643 2222
Q ss_pred EcCCCccccC---------C-CCCcc-c-----------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 157 VDTSNEIGGD---------G-DIPHS-A-----------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 157 ~~~~~ei~~~---------~-~~~~~-~-----------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+.+...+... . ..... . +. .......+|+|++||+++++++..+|++||+|||
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 2111110000 0 00000 0 00 0012234699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|... +.++.+.|.|+|+++|+.+....++++++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~ 208 (237)
T PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGY 208 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEE
Confidence 99999876 44445568999999999775555555543
No 132
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.89 E-value=1.6e-22 Score=174.67 Aligned_cols=149 Identities=21% Similarity=0.342 Sum_probs=106.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++++.|. .+.++.
T Consensus 4 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 4 LSRVSWSAGGRL--IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred EEeEEEEECCEE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 457888886543 588999999999999999999999999999999999876432 122332
Q ss_pred CCCccccC---------CCCCc---------cc---cc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------GDIPH---------SA---IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~---------~~---~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... ..... .. .. ..+....+|+|++||+++++++..+|+++|+
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111100 00000 00 00 0122334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 209 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVV 209 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999876 444445688999999998877666665543
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-22 Score=177.12 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------~ 157 (254)
+.++++++.... ..++++++.+.+|++++|+|+||||||||+++|+|+++|+.| .+.+ +
T Consensus 6 ~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 6 TRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheEEE
Confidence 457888885322 258899999999999999999999999999999999988743 2222 1
Q ss_pred cCCCc--cccC------C------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 158 DTSNE--IGGD------G------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 158 ~~~~e--i~~~------~------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
.+... +... . ...... . + ..+....+|+|++||+++++||..+|++||+||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11110 0000 0 000000 0 0 012334569999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 209 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++++|..+ +.++.+. |.|+|+++|+.+....++++++.
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~ 210 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV 210 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 999999876 3344444 89999999998877666665543
No 134
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-22 Score=177.43 Aligned_cols=147 Identities=16% Similarity=0.225 Sum_probs=103.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++++++.... ..++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+
T Consensus 4 ~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 4 LENVSYSYPDGT-PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEcCCCC-ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEECCccccHHHHHhheEE
Confidence 457888874322 258899999999999999999999999999999999988643 2222
Q ss_pred EcCCCccccC-C------CCCcccc------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 157 VDTSNEIGGD-G------DIPHSAI------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 157 ~~~~~ei~~~-~------~~~~~~~------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+.+.....+. . .+..... + ..+....+|+||+||+++++|+..+|++||+|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111110000 0 0000000 0 01223346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|+.. +.++.+.|.|+|+++|+.+.... +++++
T Consensus 162 EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~-~d~v~ 206 (274)
T PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRII 206 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh-CCEEE
Confidence 9999999876 33444568999999999877754 55543
No 135
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=1.3e-22 Score=169.45 Aligned_cols=148 Identities=11% Similarity=0.070 Sum_probs=105.1
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccc----
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIG---- 164 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~---- 164 (254)
+.++++++.... ...++.+++.+++|++++|+||||||||||+++|+|+.+++.|. ++.++.+...+.
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~ 82 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTI 82 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcH
Confidence 468888886531 13588999999999999999999999999999999999887543 244444432211
Q ss_pred -----cCCCCCcccc-------cc---------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 165 -----GDGDIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 165 -----~~~~~~~~~~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
+......... .. ......+|+|++||+++++++..+|+++++|||++++|...
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 83 RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 0000000000 00 01224579999999999999999999999999999999875
Q ss_pred ---HHH-----HHhCCceEEEEEchhhHHHHhCChh
Q 025371 218 ---CRS-----IAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 218 ---~~~-----~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+.+ ....|.++|+++|..+.... .+++
T Consensus 163 ~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred HHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE
Confidence 222 22347899999999877776 5544
No 136
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.3e-22 Score=177.40 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=104.6
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------------- 152 (254)
+.++++++.... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHH
Confidence 457888875421 13578899999999999999999999999999999999876332
Q ss_pred -eEEEEcCCC--ccccC------C------CCCccc-----------ccc-----ccccCCCChhHHHHHHHHHHHccCC
Q 025371 153 -RVVIVDTSN--EIGGD------G------DIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 153 -~i~~~~~~~--ei~~~------~------~~~~~~-----------~~~-----~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
.+.++.+.. .+... . ...... ++. .+....+|+|++||+++++|+..+|
T Consensus 85 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (280)
T PRK13649 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEP 164 (280)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 122222211 00000 0 000000 000 1122346999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++||+|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 217 (280)
T PRK13649 165 KILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYV 217 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEE
Confidence 9999999999999876 334445589999999998877666665543
No 137
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.88 E-value=1.3e-22 Score=172.02 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=104.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc-----CcCCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL-----SDEFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~-----~~~~~~------------------- 152 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|++ +|..|.
T Consensus 3 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 3 LRDLNVYYGDKH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred EEEEEEEcCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 457888876543 588899999999999999999999999999999999 665331
Q ss_pred -eEEEEcCCCccccC--------C--C--C-Ccc----cc-------cc----ccc--cCCCChhHHHHHHHHHHHccCC
Q 025371 153 -RVVIVDTSNEIGGD--------G--D--I-PHS----AI-------GT----ARR--MQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 153 -~i~~~~~~~ei~~~--------~--~--~-~~~----~~-------~~----~~~--~~~~s~g~~~~~~l~~al~~~P 201 (254)
++.++.+...+... . . . ... .. +. .+. ...+|+||+||+++++++..+|
T Consensus 81 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 81 RRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 12222222111100 0 0 0 000 00 00 122 2568999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++||+|||++++|... +.++.+. .++|+++|+.+....++++++.
T Consensus 161 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~ 212 (227)
T cd03260 161 EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAF 212 (227)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEE
Confidence 9999999999999876 3344444 8999999998877666665543
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=175.08 Aligned_cols=148 Identities=14% Similarity=0.221 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++++.|. .+.++.
T Consensus 14 i~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 14 LRNVSFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred EeeEEEEECCEE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 457888876533 588999999999999999999999999999999999876432 122222
Q ss_pred CCCccccC---------CCCC--------ccc----cc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------GDIP--------HSA----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~~~~--------~~~----~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... .... ... .. ..+....+|+|++||+++++++..+|++||+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111000 0000 000 00 0112234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|..+ +.++..+ |.++|+++|+.+....++++++
T Consensus 172 DEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~ 219 (265)
T PRK10575 172 DEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLV 219 (265)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999886 3444444 8999999999887766655554
No 139
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2e-22 Score=174.95 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=105.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++++.| .+. ++
T Consensus 10 i~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 10 GEQLTLGYGKYT--VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG-HVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEECCEE--EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEhhhCCHHHHhhheEEe
Confidence 568888886543 58899999999999999999999999999999999987633 222 22
Q ss_pred cCCCccccC---------CCCCc--------c----cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD---------GDIPH--------S----AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~---------~~~~~--------~----~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+...+... ...+. . .. + ..+....+|+|++||+++++|+..+|+++|
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 221111000 00000 0 00 0 012334469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|||++++|... +.++.+ .|.++|+++|+.+....+.++++.
T Consensus 167 lDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~ 216 (265)
T PRK10253 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIA 216 (265)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999876 334444 388999999998877666665543
No 140
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.88 E-value=1.7e-22 Score=172.53 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=103.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+++|..|. .+.++.
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVL 82 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEc
Confidence 45788887532223578889999999999999999999999999999999876432 122222
Q ss_pred CCCccccC-----CCC--C---cccc-------c--c-------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD-----GDI--P---HSAI-------G--T-------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~-----~~~--~---~~~~-------~--~-------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... ... + .... . . ......+|+|++||+++++++..+|++||+
T Consensus 83 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 162 (237)
T cd03252 83 QENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIF 162 (237)
T ss_pred CCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 22111000 000 0 0000 0 0 012345799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++. .|.++|+++|+.+.... +++++
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~-~d~v~ 207 (237)
T cd03252 163 DEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKN-ADRII 207 (237)
T ss_pred eCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHh-CCEEE
Confidence 99999999876 33343 48899999999877765 45443
No 141
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.88 E-value=2.9e-22 Score=166.67 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=96.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~ 158 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++.
T Consensus 3 ~~~l~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 3 ARNLACSRGERM--LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG-EVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEECCEE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccchHHhhhheEEec
Confidence 457888776543 48889999999999999999999999999999999988643 222 222
Q ss_pred CCCccccCC----------CCCc-cc--c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 159 TSNEIGGDG----------DIPH-SA--I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 159 ~~~ei~~~~----------~~~~-~~--~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
+...+.... .... .. . + ..+....+|+|++||+++++++..+|+++++|||++++|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 111110000 0000 00 0 0 012233469999999999999999999999999999999
Q ss_pred HHH-------HHHHHhCCceEEEEEchh
Q 025371 215 AHA-------CRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 215 ~~~-------~~~~~~~G~~vi~t~H~~ 235 (254)
... +.++.+.|.++|+++|..
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 160 KAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 876 334445688999999975
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.88 E-value=1.7e-22 Score=174.16 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=103.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----------------- 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~----------------- 159 (254)
+.+++++++.. ..++++++.+++|++++|+||||||||||+++|+|+++|+.| .+.+-..
T Consensus 3 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG-QIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccccccch
Confidence 45788888653 258889999999999999999999999999999999988633 2221100
Q ss_pred ------CCccccC----CCCCcccc--------------c----------------c----ccccCCCChhHHHHHHHHH
Q 025371 160 ------SNEIGGD----GDIPHSAI--------------G----------------T----ARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 160 ------~~ei~~~----~~~~~~~~--------------~----------------~----~~~~~~~s~g~~~~~~l~~ 195 (254)
...+.+. ..++...+ . . .+....+|+|++||+++++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 0001100 00000000 0 0 0122346999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++..+|++||+|||++++|... +.++.+ .|.++|+++|+.+....+.++++
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999876 334444 48999999999887766555554
No 143
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=181.42 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=100.9
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------------CCccc
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------SNEIG 164 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------------~~ei~ 164 (254)
+++++|+... . ++++.+++|++++|+||||||||||+++|+|+++|+.| .+.+-+. ...+.
T Consensus 5 ~l~k~~~~~~---~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLC---L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKG-RIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEE---E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccchhhCCEE
Confidence 6777776543 2 68888999999999999999999999999999988633 3322110 00111
Q ss_pred cC----CCCCccccc---------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 165 GD----GDIPHSAIG---------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 165 ~~----~~~~~~~~~---------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
+. ..+++..+. ..+....+|+||+||+++++|+..+|++||+|||++++
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 10 011111000 01233456999999999999999999999999999999
Q ss_pred HHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 214 EAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 214 d~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|... +.++.+. |.++|+++|+.+....++++++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~ 200 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVV 200 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE
Confidence 9876 3344444 8899999999876666666554
No 144
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=8.2e-23 Score=162.42 Aligned_cols=136 Identities=19% Similarity=0.226 Sum_probs=97.6
Q ss_pred ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--------------CccccC----CCCC
Q 025371 109 SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------------NEIGGD----GDIP 170 (254)
Q Consensus 109 ~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~--------------~ei~~~----~~~~ 170 (254)
...++.++..+++|+.++|+||+||||||||-.++|+..++.+ .|....+. ..+.+. ..+|
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip 101 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP 101 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence 3457788888999999999999999999999999999988743 23322211 000000 0111
Q ss_pred cccc-----------c------------------ccc----ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 171 HSAI-----------G------------------TAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 171 ~~~~-----------~------------------~~~----~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
+... + .-. ....+|||+|||+++|||+..+|++++.|||+.++|...
T Consensus 102 ~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T 181 (228)
T COG4181 102 NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 (228)
T ss_pred cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence 1100 0 001 112359999999999999999999999999999999775
Q ss_pred -------HHH-HHhCCceEEEEEchhhHHHHhCChh
Q 025371 218 -------CRS-IAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 218 -------~~~-~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+.. ..+.|.|++.+||+..++..|+|.+
T Consensus 182 g~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~ 217 (228)
T COG4181 182 GDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL 217 (228)
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee
Confidence 222 2356999999999999999998764
No 145
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.88 E-value=4.3e-22 Score=168.61 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=104.5
Q ss_pred EEEEEEEECce-----eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc-C---C-------
Q 025371 97 IVGLTCRVGRA-----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-T---S------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~-----~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~-~---~------- 160 (254)
+.+++++++.. ....++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+-. . .
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~~~g~~~~~~~~~~~ 82 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG-RILVRHEGAWVDLAQASPR 82 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEEecCCCccchhhcCHH
Confidence 45788887521 12358889999999999999999999999999999999988643 333210 0 0
Q ss_pred -------CccccCCC----CCcc-------------cc----------------c--c---ccccCCCChhHHHHHHHHH
Q 025371 161 -------NEIGGDGD----IPHS-------------AI----------------G--T---ARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 161 -------~ei~~~~~----~~~~-------------~~----------------~--~---~~~~~~~s~g~~~~~~l~~ 195 (254)
..+.+..+ .+.. .. + . ......+|+|++||+++++
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~lar 162 (224)
T TIGR02324 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIAR 162 (224)
T ss_pred HHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHH
Confidence 00111000 0000 00 0 0 0123346999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++..+|+++|+|||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 163 GFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 9999999999999999999876 34444568999999999887776666554
No 146
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=176.90 Aligned_cols=150 Identities=15% Similarity=0.245 Sum_probs=105.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC--------------------eEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK--------------------RVVI 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~--------------------~i~~ 156 (254)
+.++++++.... ..++++++.+.+|++++|+||||||||||+++|+|+++|..|. ++.+
T Consensus 8 ~~~l~~~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 8 VEELNYNYSDGT-HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred EEeEEEEeCCCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEE
Confidence 568888885221 2588999999999999999999999999999999999876432 1222
Q ss_pred EcCCCc--cccC------C------CCCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 157 VDTSNE--IGGD------G------DIPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 157 ~~~~~e--i~~~------~------~~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+.+... +... . ..+.... + ..+....+|+|++||+++++||..+|++||+|
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD 166 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD 166 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 222110 0000 0 0000000 0 01233346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 208 EIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||++++|+.. +.++.+. |.|+++++|+.+....++++++.
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~ 214 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV 214 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999876 3344444 89999999998877766665543
No 147
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.7e-22 Score=172.99 Aligned_cols=148 Identities=18% Similarity=0.200 Sum_probs=104.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++++... .++.+++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 8 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 8 VSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred EeeEEEEECCEE--EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 457888876533 588899999999999999999999999999999999886432 01222
Q ss_pred cCCCccccCCCC--------------------------Ccc------cc-------c----cccccCCCChhHHHHHHHH
Q 025371 158 DTSNEIGGDGDI--------------------------PHS------AI-------G----TARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 158 ~~~~ei~~~~~~--------------------------~~~------~~-------~----~~~~~~~~s~g~~~~~~l~ 194 (254)
.+...+.....+ ... .. + ..+....+|+|++||++++
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 221111000000 000 00 0 0012223699999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+..+|++||+|||++++|... +.++.++ |.++|+++|+.+....++++++
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~ 225 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY 225 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999876 3344444 8999999999887766666554
No 148
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=179.58 Aligned_cols=149 Identities=13% Similarity=0.203 Sum_probs=103.8
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc----CC---------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----TS--------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~----~~--------- 160 (254)
+.+++++|.... ...++++++.+++|++++|+|+||||||||+++|+|+++|+.| .|.+-+ +.
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~~ 102 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG-TIQVGDIYIGDKKNNHELITN 102 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCEEccccccccccccc
Confidence 457888875421 2368899999999999999999999999999999999988643 222210 00
Q ss_pred -------------CccccCCCCC-----ccc------------------c-----------c-----cccccCCCChhHH
Q 025371 161 -------------NEIGGDGDIP-----HSA------------------I-----------G-----TARRMQVPEPSLQ 188 (254)
Q Consensus 161 -------------~ei~~~~~~~-----~~~------------------~-----------~-----~~~~~~~~s~g~~ 188 (254)
..+.+..+.+ ... . + ..+....+|+||+
T Consensus 103 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 182 (320)
T PRK13631 103 PYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQK 182 (320)
T ss_pred ccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHH
Confidence 0011100000 000 0 0 0012234699999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 189 ~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||+++++||..+|++||+|||++++|+.+ +.++.+.|.|+|+++|+.+....++++++
T Consensus 183 qRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999876 33444568999999999886655555543
No 149
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=180.24 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=104.8
Q ss_pred EEEEEEEECce--------eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--------
Q 025371 97 IVGLTCRVGRA--------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~--------~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-------- 160 (254)
+.+++++|... ....++++++.+.+|++++|+|+||||||||+++|+|+++++. +.|.+-+..
T Consensus 8 v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~-G~i~~~g~~l~~~~~~~ 86 (327)
T PRK11308 8 AIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG-GELYYQGQDLLKADPEA 86 (327)
T ss_pred EeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-cEEEECCEEcCcCCHHH
Confidence 45677766421 1235888999999999999999999999999999999998763 333221100
Q ss_pred -----CccccCCC------CCcccc------------------------------c-----cccccCCCChhHHHHHHHH
Q 025371 161 -----NEIGGDGD------IPHSAI------------------------------G-----TARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 161 -----~ei~~~~~------~~~~~~------------------------------~-----~~~~~~~~s~g~~~~~~l~ 194 (254)
..+.+..+ .+...+ + ..+....+|+||+||+++|
T Consensus 87 ~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iA 166 (327)
T PRK11308 87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIA 166 (327)
T ss_pred HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHH
Confidence 00111000 000000 0 0012234699999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+||..+|++||+|||++++|... +.++.+ .|.++|++||+.+....++++++.
T Consensus 167 rAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v 227 (327)
T PRK11308 167 RALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV 227 (327)
T ss_pred HHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999875 344444 489999999999988877776654
No 150
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=177.19 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=104.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|. ++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHhhheEEE
Confidence 5688888864222368899999999999999999999999999999999998743 222 22
Q ss_pred cCCCc--cccC---C--C-------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 158 DTSNE--IGGD---G--D-------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 158 ~~~~e--i~~~---~--~-------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
.+... +... . . .+... . + ..+....+|+|++||+++++++..+|++||+||
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 22110 0000 0 0 00000 0 0 012333469999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 209 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++++|... +.++.+. |.|+|+++|+.+.... .++++
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~ 211 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVI 211 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEE
Confidence 999999876 3444444 8999999999776665 45443
No 151
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.6e-22 Score=159.47 Aligned_cols=143 Identities=23% Similarity=0.336 Sum_probs=103.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCC-Cccccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI-PHSAIG 175 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~-~~~~~~ 175 (254)
+.++++++.... .++.++..+.+|+.++|+|+||||||||+++|+|++++. .+++ +++.. .+...... ......
T Consensus 2 ~~~~~~~~~~~~--~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i-~~~~~-~~~~~~~~~~~~~i~ 76 (157)
T cd00267 2 IENLSFRYGGRT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEI-LIDGK-DIAKLPLEELRRRIG 76 (157)
T ss_pred eEEEEEEeCCee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEE-EECCE-EcccCCHHHHHhceE
Confidence 356777775542 478888889999999999999999999999999999876 3443 33322 11100000 000011
Q ss_pred cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 176 TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 176 ~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
....+|+|+++|.++++++..+|+++++|||++++|... +.++.+.+.++++++|..+....+.+.++.
T Consensus 77 ---~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 152 (157)
T cd00267 77 ---YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV 152 (157)
T ss_pred ---EEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 011189999999999999999999999999999999876 333334568999999998888877665543
No 152
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4.7e-22 Score=173.30 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=104.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------eEEEEcCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSN 161 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------~i~~~~~~~ 161 (254)
+.+++++++... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+..
T Consensus 9 ~~~l~~~~~~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 9 VNDVTVTWRNGH-TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEeEEEEecCCc-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 457888875211 2478899999999999999999999999999999999886332 133333321
Q ss_pred cccc--C----CC-----CC--------cc----ccc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 162 EIGG--D----GD-----IP--------HS----AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 162 ei~~--~----~~-----~~--------~~----~~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
.+.. . .. .. .. ... ..+....+|+|++||+++++|+..+|+++|+|
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1100 0 00 00 00 000 01223346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|+.. +.++++.|.++|+++|+.+....++++++
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 168 EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999876 34444568999999999876666666553
No 153
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.1e-22 Score=169.35 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=100.8
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE----------------------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------------- 156 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~---------------------- 156 (254)
+++++|++.. . ++++.+.+ ++++|+||||||||||+++|+|+++|+.| ++.+
T Consensus 5 ~l~~~~~~~~---~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFT---L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG-TIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCee---e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEecccccchhhhhhHhhcEE
Confidence 7888887754 2 88888999 99999999999999999999999987643 2322
Q ss_pred -EcCCCccccCCCC--------Cc-c------ccc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 157 -VDTSNEIGGDGDI--------PH-S------AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 157 -~~~~~ei~~~~~~--------~~-~------~~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+.+...+...... .. . ... ..+....+|+|++||+++++++..+|+++|+|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111111000000 00 0 000 0122334699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 210 GTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++++|... +.++.++ |.++|+++|+.+....+.++++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 204 (214)
T cd03297 159 FSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV 204 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE
Confidence 99999876 3344444 88999999998877666665543
No 154
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.88 E-value=4e-22 Score=171.80 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=103.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------------- 160 (254)
+.++++++.... .++++++.+++|++++|+||||||||||+++|+|+++|..| .|.+-+..
T Consensus 6 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGK--GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG-TATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCce--EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEecccccccccccCCHHHHHH
Confidence 457888876533 47889999999999999999999999999999999988643 33221110
Q ss_pred ---CccccCCCC------Ccc----cc-------c------------------------cccccCCCChhHHHHHHHHHH
Q 025371 161 ---NEIGGDGDI------PHS----AI-------G------------------------TARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 161 ---~ei~~~~~~------~~~----~~-------~------------------------~~~~~~~~s~g~~~~~~l~~a 196 (254)
..+.+..+. +.. ++ . ..+....+|+|++||+++++|
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 001110000 000 00 0 001223469999999999999
Q ss_pred HccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 197 ENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 197 l~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+..+|++||+|||++++|..+ +.++.. .|.++|+++|+.+....+.++++
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~ 220 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLL 220 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999876 333333 48899999999887776555543
No 155
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.1e-22 Score=170.39 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=102.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.++++++.... .++++.+.+|++++|+||||||||||+++|+|+++|..|. .+.++.+.
T Consensus 4 ~~~l~~~~~~~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 4 LTDITWLYHHLP----MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEEEEEECCcc----ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 468888886422 3688889999999999999999999999999999886432 12222222
Q ss_pred CccccC---------CCCCc---cc-----cc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGD---------GDIPH---SA-----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~---------~~~~~---~~-----~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+... ...+. .. .. ..+....+|+|++||+++++++..+|+++|+|||+++
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 111000 00000 00 00 0122334699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 202 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV 202 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99876 334444 488999999998876666565543
No 156
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.9e-22 Score=176.37 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=102.7
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------- 156 (254)
+.+++++|.+. ....++++++.+++|++++|+|+||||||||+++|+|+++|+.| .|.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLTEENVWDIRHKIGM 85 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHHhhceE
Confidence 45788887532 12258899999999999999999999999999999999988743 2222
Q ss_pred EcCCCc--cccC---C--CCCcc--cc----------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 157 VDTSNE--IGGD---G--DIPHS--AI----------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 157 ~~~~~e--i~~~---~--~~~~~--~~----------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+.+... +... . .+... .. + ..+....+|+|++||+++++|+..+|++||+|
T Consensus 86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD 165 (279)
T PRK13650 86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD 165 (279)
T ss_pred EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 212110 0000 0 00000 00 0 01223346999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChh
Q 025371 208 EIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~ 245 (254)
||++++|... +.++.+. |.|+|+++|+.+.... ++++
T Consensus 166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~-~dri 210 (279)
T PRK13650 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL-SDRV 210 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEE
Confidence 9999999876 4444444 8999999999776654 5544
No 157
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.88 E-value=2.3e-22 Score=174.87 Aligned_cols=151 Identities=16% Similarity=0.222 Sum_probs=104.4
Q ss_pred EEEEEEEECce-------eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------
Q 025371 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~-------~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------- 152 (254)
+.+++++|+.. ....++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 86 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRS 86 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHh
Confidence 56788887521 123578899999999999999999999999999999999886432
Q ss_pred -eEEEEcCCCccccCC--------------C--CCccc----c-------cc-----ccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGDG--------------D--IPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~~--------------~--~~~~~----~-------~~-----~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++.++.+.....+.. . ..... . +. ......+|+||+||+++++++..
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL 166 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh
Confidence 122222211100000 0 00000 0 00 01223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|++||+|||++++|... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 167 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~ 222 (267)
T PRK15112 167 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLV 222 (267)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 999999999999999876 334444 388999999998877776665543
No 158
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.88 E-value=3e-22 Score=180.69 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=100.6
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------------CCccc
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------SNEIG 164 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------------~~ei~ 164 (254)
+++++++... + ++++.+++|++++|+||||||||||+++|+|+++|+.| .+.+... ...+.
T Consensus 4 ~l~~~~~~~~---~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFS---L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG-EIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEE---E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccCccccccchhhCCeE
Confidence 6777876543 3 68888999999999999999999999999999988633 3322110 00011
Q ss_pred cC----CCCCcccc------c-------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 165 GD----GDIPHSAI------G-------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 165 ~~----~~~~~~~~------~-------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+. ..+++..+ . ..+....+|+||+||+++++||..+|++||+|||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 10 00111000 0 0012234699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|... +.++.++ |.++|+++|+.+....++++++
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~ 203 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVV 203 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 99999876 4444444 8999999999877766666554
No 159
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.88 E-value=2.4e-22 Score=189.54 Aligned_cols=147 Identities=17% Similarity=0.133 Sum_probs=106.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------I 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------~ 156 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.| .|. +
T Consensus 14 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 14 ARSISKQYSGVE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEeEEEEeCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHhCCEEE
Confidence 568888886543 58899999999999999999999999999999999988633 222 2
Q ss_pred EcCCCccccCC------CCC---ccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 157 VDTSNEIGGDG------DIP---HSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 157 ~~~~~ei~~~~------~~~---~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
+.+...+.... ... ... . + ..+....+|+||+||++++++|..+|++||+|||+++
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~ 170 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTAS 170 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 22211110000 000 000 0 0 0123345799999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 213 AEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 213 ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+.. +.++.+.|.++|+++|+.+....++++++
T Consensus 171 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~ 211 (510)
T PRK15439 171 LTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIS 211 (510)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 99876 44455668999999999887766666654
No 160
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.2e-22 Score=162.13 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=102.3
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-c---------cccCC
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-E---------IGGDG 167 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-e---------i~~~~ 167 (254)
.++++.|.......+++++..+.+|+.+++.||+|||||||||.++|+..|..+ + +.++.+. + +....
T Consensus 7 ~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~-i~l~~r~i~gPgaergvVFQ~~~ 84 (259)
T COG4525 7 SHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-S-IQLNGRRIEGPGAERGVVFQNEA 84 (259)
T ss_pred hheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-e-EEECCEeccCCCccceeEeccCc
Confidence 467777766655578899999999999999999999999999999999998633 2 2222110 0 00001
Q ss_pred CCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 168 DIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 168 ~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
.+|..+.. ..+..-.+||||+||+.+||||..+|+.+++|||++.+|
T Consensus 85 LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 85 LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHH
Confidence 11111100 001222359999999999999999999999999999999
Q ss_pred HHH-------HHHHH-hCCceEEEEEchhhHHHHhCC
Q 025371 215 AHA-------CRSIA-ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 215 ~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+.. +..++ .+|+.++++||+.+.+-.+..
T Consensus 165 a~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 165 ALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 876 33333 679999999999664444433
No 161
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.88 E-value=3.2e-22 Score=168.26 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=101.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.++++++.. ...++++.+.+|++++|+||||||||||+++|+|+++++.|. .+.++.+.
T Consensus 3 ~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 3 LDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred EEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 4578887753 245788889999999999999999999999999999886431 12222222
Q ss_pred CccccC---------CCCCc-----c---ccc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGD---------GDIPH-----S---AIG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~---------~~~~~-----~---~~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+... ...+. . ... ..+....+|+|++||+++++++..+|+++|+|||+++
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 111100 00000 0 000 0122334699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 213 AEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 213 ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|... +.++.++ |.++|+++|+.+....+.++++
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~ 200 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIA 200 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEE
Confidence 99876 3344443 8899999999876665555544
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3e-22 Score=170.61 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-----------------EcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-----------------~~~ 159 (254)
+.++++++.... .++++++.+++|++++|+|+||||||||+++|+|++++..| .+.+ +.+
T Consensus 3 ~~~l~~~~~~~~--il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG-EILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeEEEEeCCee--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcceEEEec
Confidence 468888886543 58899999999999999999999999999999999988633 2222 111
Q ss_pred CCccccCCCC------C------cc-----cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGDGDI------P------HS-----AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~~~~------~------~~-----~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+.....+ . .. .. + ..+....+|+|++||+++++++..+|+++|+|||++
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111000000 0 00 00 0 012223469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|... +.++.++ |.|+|+++|.......+.++++
T Consensus 160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~ 202 (232)
T cd03300 160 ALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIA 202 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999876 3344443 8999999999876655555543
No 163
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.88 E-value=4.2e-22 Score=172.29 Aligned_cols=147 Identities=19% Similarity=0.214 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------------- 160 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+.+..
T Consensus 9 ~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 9 VRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-EVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCccccccccccCCHHHHHH
Confidence 45788887653 257889999999999999999999999999999999987633 23221110
Q ss_pred ---CccccCCCCC------cc----c--------------------------ccc-----ccccCCCChhHHHHHHHHHH
Q 025371 161 ---NEIGGDGDIP------HS----A--------------------------IGT-----ARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 161 ---~ei~~~~~~~------~~----~--------------------------~~~-----~~~~~~~s~g~~~~~~l~~a 196 (254)
..+.+....+ .. + ++. .+....+|+|++||++++++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 0011100000 00 0 000 12234469999999999999
Q ss_pred HccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 197 ENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 197 l~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+..+|++||+|||++++|... +.++.+. |.++|+++|+.+....+.+.++
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~ 223 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL 223 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999876 3333343 8899999999888876666554
No 164
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-22 Score=179.65 Aligned_cols=148 Identities=17% Similarity=0.212 Sum_probs=104.4
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC---CCCe------------------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE---FQKR------------------ 153 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~---~~~~------------------ 153 (254)
+.++++.|.... ...++++++.+.+|++++|+|+||||||||+++|+|++++. ..+.
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~ 85 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 457777775421 23588999999999999999999999999999999998741 1222
Q ss_pred -----EEEEcCCCccccCCCCCcccc------------------------------cc-------ccccCCCChhHHHHH
Q 025371 154 -----VVIVDTSNEIGGDGDIPHSAI------------------------------GT-------ARRMQVPEPSLQHKV 191 (254)
Q Consensus 154 -----i~~~~~~~ei~~~~~~~~~~~------------------------------~~-------~~~~~~~s~g~~~~~ 191 (254)
+.++.+.....+ .|...+ +. .+....+|+||+||+
T Consensus 86 ~r~~~i~~v~Q~~~~~l---~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 86 LVGAEVAMIFQDPMTSL---NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HhCCCEEEEecCchhhc---CCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 222222210000 000000 00 012234699999999
Q ss_pred HHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 192 MIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 192 ~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++++|+..+|++||+|||++++|... +.++.+ .|.++|++||+.+....+.++++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~v 226 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIV 226 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999875 444444 589999999998888777666543
No 165
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-22 Score=176.80 Aligned_cols=149 Identities=11% Similarity=0.097 Sum_probs=103.4
Q ss_pred EEEEEEEECcee---ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------
Q 025371 97 IVGLTCRVGRAV---SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------ 155 (254)
Q Consensus 97 ~~~l~ir~~~~~---~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------ 155 (254)
+.+++++++... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .+.
T Consensus 9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG-QTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEccccccccccHHH
Confidence 567888886432 1258889999999999999999999999999999999988643 222
Q ss_pred ------EEcCCCcccc-CC-------------CCCccc----c-------cc-----ccccCCCChhHHHHHHHHHHHcc
Q 025371 156 ------IVDTSNEIGG-DG-------------DIPHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 156 ------~~~~~~ei~~-~~-------------~~~~~~----~-------~~-----~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++.+...... .. ...... + +. .+....+|+||+||+++++|+..
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 1111110000 00 000000 0 00 01223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|... +.++.+ .|.++|+++|+.+....++++++
T Consensus 168 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~ 222 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI 222 (289)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999876 333444 48899999999876665555543
No 166
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=1.7e-22 Score=182.25 Aligned_cols=135 Identities=17% Similarity=0.214 Sum_probs=96.5
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------------CCccccC----CCCCcc
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------------SNEIGGD----GDIPHS 172 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------------~~ei~~~----~~~~~~ 172 (254)
.++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+-.. ...+.+. ..+++.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G-~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG-QIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 46788889999999999999999999999999999998743 3322110 0111111 011111
Q ss_pred ccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH--
Q 025371 173 AIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 217 (254)
Q Consensus 173 ~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-- 217 (254)
.+. ..+....+|+||+||+++++||..+|++||||||++++|+..
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~ 166 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD 166 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 100 002223469999999999999999999999999999999876
Q ss_pred -----HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 218 -----CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 -----~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.++.+ .|.|+|+++|+.+....++++++
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 334443 48999999999886666656554
No 167
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.7e-22 Score=175.09 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=104.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.+++++++... ..++++++.+.+|++++|+||||||||||+++|+|++++..| .|.
T Consensus 4 ~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 4 TRDLKYSYPDGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEeCCCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHHHHHhheE
Confidence 468888885321 258899999999999999999999999999999999987633 222
Q ss_pred EEcCCCc-cccCCC------CC----cc---c----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 156 IVDTSNE-IGGDGD------IP----HS---A----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 156 ~~~~~~e-i~~~~~------~~----~~---~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++.+... ..+... .. .. . . + ..+....+|+|++|++++++++..+|+++|+
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 161 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2222110 000000 00 00 0 0 0 0122234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.++|.|+|+++|+.+....++++++.
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~ 209 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYV 209 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999876 344445689999999998877666665543
No 168
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.88 E-value=2.4e-22 Score=179.66 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=97.7
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE----------------------EEcCCC--ccccC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------------IVDTSN--EIGGD 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~----------------------~~~~~~--ei~~~ 166 (254)
.++++++.+.+|++++|+|+||||||||+++|+|+++++.| .|. ++.+.. .+...
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 114 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPR 114 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCC
Confidence 57889999999999999999999999999999999988633 332 222211 01000
Q ss_pred CC---------------CCcccc-----------cc-----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHH
Q 025371 167 GD---------------IPHSAI-----------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (254)
Q Consensus 167 ~~---------------~~~~~~-----------~~-----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~ 215 (254)
.. ...... +. .+....+|+||+||+++|+|+..+|++||+|||++++|.
T Consensus 115 ~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~ 194 (331)
T PRK15079 115 MTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDV 194 (331)
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 00 000000 00 012234699999999999999999999999999999998
Q ss_pred HH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 216 HA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 216 ~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.. +.++.+ .|.++|++||+.+....++++++.
T Consensus 195 ~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 195 SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 76 344444 389999999999888877776643
No 169
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=6.8e-23 Score=171.40 Aligned_cols=148 Identities=19% Similarity=0.245 Sum_probs=108.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC------c--------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------E-------- 162 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~------e-------- 162 (254)
+.++++|++.-.. ++++++.+++|++++|+|||||||||++|+|+|+++|+. ++|.+-.+.. +
T Consensus 7 v~~l~k~FGGl~A--l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~-G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTA--VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS-GTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEE--EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC-ceEEECCcccCCCCHHHHHhcccee
Confidence 4578899888664 899999999999999999999999999999999999984 4444322210 0
Q ss_pred -cccCCCCCcccc------c---------------------------------------cccccCCCChhHHHHHHHHHH
Q 025371 163 -IGGDGDIPHSAI------G---------------------------------------TARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 163 -i~~~~~~~~~~~------~---------------------------------------~~~~~~~~s~g~~~~~~l~~a 196 (254)
++....++...+ . ..+....+|.|++++..+|+|
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 000000011000 0 001222359999999999999
Q ss_pred HccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 197 ENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 197 l~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+.+|++|+||||.+++.+.. +.++.+ .|.|++++.|+.++...++++++-
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~V 222 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVV 222 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEe
Confidence 999999999999999876554 555555 468999999999999988887754
No 170
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.88 E-value=2.9e-22 Score=171.52 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------I 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------~ 156 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. +
T Consensus 5 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 5 LEGLSVSFDGFK--ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG-SVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEeeEEEcCCeE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCeecCCCCHHHHHhcCeeE
Confidence 457888886532 58899999999999999999999999999999999987643 222 2
Q ss_pred EcCCCccccC---------CCCCc------------c-c---c-------c----cccccCCCChhHHHHHHHHHHHccC
Q 025371 157 VDTSNEIGGD---------GDIPH------------S-A---I-------G----TARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 157 ~~~~~ei~~~---------~~~~~------------~-~---~-------~----~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
+.+...+... ..... . . . + ..+....+|+|++||+++++|+..+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 2111110000 00000 0 0 0 0 0012234699999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++|++|||++++|... +.++. .+.++|+++|+.+....++++++.
T Consensus 162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~ 214 (242)
T TIGR03411 162 PKLLLLDEPVAGMTDEETEKTAELLKSLA-GKHSVVVVEHDMEFVRSIADKVTV 214 (242)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999886 23333 378999999998877766666543
No 171
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=5.3e-22 Score=166.30 Aligned_cols=141 Identities=21% Similarity=0.203 Sum_probs=100.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-------CccccCC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------NEIGGDG-- 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-------~ei~~~~-- 167 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+.+++.| .|.+-... ..+.+..
T Consensus 5 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRV--LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG-TIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeE--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeCcchhhHhhcEEecCC
Confidence 467888876543 48889999999999999999999999999999999987644 33221100 0011100
Q ss_pred --CCCcccc-----------c------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 168 --DIPHSAI-----------G------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 168 --~~~~~~~-----------~------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
..+.... . .......+|+|++||+++++++..+|+++|+|||++++|..
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0000000 0 01122346999999999999999999999999999999987
Q ss_pred H-------HHHHHhCCceEEEEEchhhHHHH
Q 025371 217 A-------CRSIAERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 217 ~-------~~~~~~~G~~vi~t~H~~~~~~~ 240 (254)
. +.++.+.|.++|+++|+.+....
T Consensus 162 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 162 AVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 6 33444568999999999765554
No 172
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.88 E-value=3.5e-22 Score=173.51 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=103.4
Q ss_pred EEEEEEEECce-------eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------
Q 025371 97 IVGLTCRVGRA-------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~-------~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------- 152 (254)
+.++++.+... ....++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHH
Confidence 45777777421 123588999999999999999999999999999999999886432
Q ss_pred ----eEEEEcCCCc--cccCC--------------CCCc-c---c-------ccc-----ccccCCCChhHHHHHHHHHH
Q 025371 153 ----RVVIVDTSNE--IGGDG--------------DIPH-S---A-------IGT-----ARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 153 ----~i~~~~~~~e--i~~~~--------------~~~~-~---~-------~~~-----~~~~~~~s~g~~~~~~l~~a 196 (254)
.+.++.+... +.... .... . . ++. ......+|+|++||+++++|
T Consensus 85 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~lara 164 (265)
T TIGR02769 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARA 164 (265)
T ss_pred HHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 1222222110 00000 0000 0 0 000 01223469999999999999
Q ss_pred HccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 197 ENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 197 l~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+..+|++||+|||++++|... +.++.+. |.|+|+++|+.+....+.++++
T Consensus 165 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~ 222 (265)
T TIGR02769 165 LAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA 222 (265)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEE
Confidence 999999999999999999875 4444444 8999999999887776655543
No 173
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=6.3e-22 Score=165.66 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=103.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++++......++.+++.+.+|+.++|+|+||||||||+++|+|++++..|. .+.++.
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 88 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIP 88 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEe
Confidence 45788887642223588899999999999999999999999999999999876432 122222
Q ss_pred CCCccccC---------CCCCccc----cccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------H
Q 025371 159 TSNEIGGD---------GDIPHSA----IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 218 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~----~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~ 218 (254)
+...+... ....... .........+|+|++||+++++++..+|+++|+|||++++|... +
T Consensus 89 q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l 168 (207)
T cd03369 89 QDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI 168 (207)
T ss_pred cCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 22111100 0000000 00012345679999999999999999999999999999999876 2
Q ss_pred HHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 219 RSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 219 ~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.++ ..|.++|+++|+.+.... .++++
T Consensus 169 ~~~-~~~~tiii~th~~~~~~~-~d~v~ 194 (207)
T cd03369 169 REE-FTNSTILTIAHRLRTIID-YDKIL 194 (207)
T ss_pred HHh-cCCCEEEEEeCCHHHHhh-CCEEE
Confidence 233 248899999999877665 45543
No 174
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.88 E-value=3.9e-22 Score=169.15 Aligned_cols=146 Identities=15% Similarity=0.240 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++.++... .++++++.+.+|++++|+||||||||||+++|+|+.+|+.| .+. ++
T Consensus 10 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 10 LQNVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EeccEEeeCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEcCcCCHHHHHhccEEE
Confidence 457777775432 58899999999999999999999999999999999987643 222 22
Q ss_pred cCCCccccC------C---C-CCcc----cc-------cc-----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 158 DTSNEIGGD------G---D-IPHS----AI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 158 ~~~~ei~~~------~---~-~~~~----~~-------~~-----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
.+...+... . . .... .. +. .+....+|+|++||+++++++..+|+++|+|||++
T Consensus 87 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 221111000 0 0 0000 00 00 12233469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|... +.++.+ .|.++|+++|+.+.... +++++
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~-~d~i~ 208 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVI 208 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh-CCEEE
Confidence 999876 333333 48899999999877765 55543
No 175
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=5.9e-22 Score=158.93 Aligned_cols=145 Identities=14% Similarity=0.139 Sum_probs=99.7
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC------Cc----cccC-
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NE----IGGD- 166 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------~e----i~~~- 166 (254)
.++.+.|..... .++..+..|++++|+||+|||||||||.|+|+..|..| .+.+.++. .+ +-+.
T Consensus 5 ~~V~~~y~~~~~----~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G-~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 5 DDVRFSYGHLPM----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG-EILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred cceEEeeCcceE----EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCc-eEEEcCeecCcCCcccCChhhhhhc
Confidence 456666655432 45556899999999999999999999999999999744 33332211 00 0000
Q ss_pred -CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 167 -GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 167 -~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+.|..+. ..+....+|||++||+++||++..+-.++++|||++.
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 011111100 0122335699999999999999999999999999999
Q ss_pred HHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+.. +.+++ +++.|++++||..+-+..+.++++.
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~f 202 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVF 202 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEE
Confidence 99875 23333 5688999999997766666665543
No 176
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3e-22 Score=174.24 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=101.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.......++++++.+++|++++|+||||||||||+++|+|+++|+.| .|. ++
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v 88 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRKHIGIV 88 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheeEE
Confidence 4678888754322257889999999999999999999999999999999987643 222 22
Q ss_pred cCCCc--cccC--------C----CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 158 DTSNE--IGGD--------G----DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 158 ~~~~e--i~~~--------~----~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
.+... +... . ...... . + .......+|+|++||+++++|+..+|++||+||
T Consensus 89 ~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (269)
T PRK13648 89 FQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDE 168 (269)
T ss_pred EeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 22110 0000 0 000000 0 0 012233469999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChh
Q 025371 209 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|++++|... +.++.+. |.|+|+++|+.+.... .+++
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i 212 (269)
T PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHV 212 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEE
Confidence 999999876 3344443 8899999999776654 4444
No 177
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=3.8e-22 Score=184.76 Aligned_cols=150 Identities=20% Similarity=0.254 Sum_probs=110.2
Q ss_pred EEEEEEEECc---------eeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC------
Q 025371 97 IVGLTCRVGR---------AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------ 161 (254)
Q Consensus 97 ~~~l~ir~~~---------~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~------ 161 (254)
+.+++.+|.. ......+++++.+.+||+++|+|++|||||||.|+|+|+++|+ ++.+.+....-
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~-~G~i~~~g~~~~~~~~~ 361 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSIIFDGQDLDLTGGE 361 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEEeCcccccccch
Confidence 5677777763 1234678899999999999999999999999999999999996 55555543220
Q ss_pred ------ccc--cC----CCCCcccccc-----------------------------------ccccCCCChhHHHHHHHH
Q 025371 162 ------EIG--GD----GDIPHSAIGT-----------------------------------ARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 162 ------ei~--~~----~~~~~~~~~~-----------------------------------~~~~~~~s~g~~~~~~l~ 194 (254)
.+. |. ...|+..++. .+....+||||+||+++|
T Consensus 362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 000 00 1111111100 012223599999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||..+|++||+|||++.+|... +.++.+ .|.+.++++|+.++.+.++++++-
T Consensus 442 RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~v 502 (539)
T COG1123 442 RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAV 502 (539)
T ss_pred HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEE
Confidence 99999999999999999999865 444443 499999999999999999988754
No 178
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.88 E-value=6.3e-22 Score=170.05 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=102.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-----CCCeEEE---------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVI--------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-----~~~~i~~--------------- 156 (254)
+.+++++++... .++++++.+++|++++|+|+||||||||+++|+|+++|+ .| .|.+
T Consensus 4 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G-~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 4 IENLNLFYGEKE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG-KVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEECCee--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-EEEECCEEccccccchHHH
Confidence 457888886543 588999999999999999999999999999999999875 33 2222
Q ss_pred ------EcCCCccccC--------C-CC----Cccc-----------ccc--------ccccCCCChhHHHHHHHHHHHc
Q 025371 157 ------VDTSNEIGGD--------G-DI----PHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 157 ------~~~~~ei~~~--------~-~~----~~~~-----------~~~--------~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+... . .. .... ++. .+....+|+|++||+++++++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 1111110000 0 00 0000 000 0122346999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|... +.++.+ +.++|+++|+.+....+.++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999876 333334 5899999999887766656553
No 179
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=3.2e-22 Score=178.76 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=103.8
Q ss_pred EEEEEEEECc--eeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC--CCCe-------------------
Q 025371 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKR------------------- 153 (254)
Q Consensus 97 ~~~l~ir~~~--~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~--~~~~------------------- 153 (254)
+.++++.+.. .....++++++.+.+|++++|+|+||||||||+++|+|++++. ..+.
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence 4567776642 1123588899999999999999999999999999999999873 1222
Q ss_pred ----EEEEcCCCccccC----------------CCCCccc-----------ccc-------ccccCCCChhHHHHHHHHH
Q 025371 154 ----VVIVDTSNEIGGD----------------GDIPHSA-----------IGT-------ARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 154 ----i~~~~~~~ei~~~----------------~~~~~~~-----------~~~-------~~~~~~~s~g~~~~~~l~~ 195 (254)
+.++.+.....+. ....... ++. .+....+|+||+||+++|+
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IAr 174 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAM 174 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHH
Confidence 2222222100000 0000000 000 0112346999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+..+|++||+|||++++|... +.++.++ |.++|+++|+.+....+.++++.
T Consensus 175 AL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~v 234 (330)
T PRK09473 175 ALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234 (330)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 9999999999999999999876 4444443 89999999998888777666643
No 180
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=2.5e-22 Score=165.92 Aligned_cols=125 Identities=17% Similarity=0.277 Sum_probs=89.3
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE---------------------EcCCCc--cccCC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI---------------------VDTSNE--IGGDG 167 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~---------------------~~~~~e--i~~~~ 167 (254)
.++.+++.+.+|++++|+||||||||||+++|+|+++++.| .|.+ +.+... +....
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG-AVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-eEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 47788889999999999999999999999999999988633 2322 111110 00000
Q ss_pred -----C-------CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---
Q 025371 168 -----D-------IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (254)
Q Consensus 168 -----~-------~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--- 217 (254)
. ..... . + ..+....+|+|++||+++++|+..+|++||+|||++++|...
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0 00000 0 0 012223469999999999999999999999999999999876
Q ss_pred ----HHHHHhCCceEEEEEchhh
Q 025371 218 ----CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 218 ----~~~~~~~G~~vi~t~H~~~ 236 (254)
+.++.+.|.++|+++|+.+
T Consensus 166 ~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 166 MLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHHHHHcCCEEEEEeeccc
Confidence 4444456899999999865
No 181
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.6e-22 Score=188.36 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=106.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 8 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 8 MAGIGKSFGPVH--ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EeeeEEEcCCeE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 467888886543 488999999999999999999999999999999999876332 12222
Q ss_pred cCCCccccC---------CCCC-----c------ccc-----------c----cccccCCCChhHHHHHHHHHHHccCCC
Q 025371 158 DTSNEIGGD---------GDIP-----H------SAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 158 ~~~~ei~~~---------~~~~-----~------~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
.+...+... ...+ . ... + ..+....+|+||+||+++++++..+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 221111000 0000 0 000 0 012234569999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+||+|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~ 217 (510)
T PRK09700 166 VIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTV 217 (510)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999876 444556689999999998877777666543
No 182
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.88 E-value=5.2e-22 Score=172.07 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=104.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC--CCeE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRV-------------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~--~~~i-------------------- 154 (254)
+.++++.++... .++.+++.+.+|++++|+||||||||||+++|+|+++|+. .+.|
T Consensus 7 ~~nl~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 7 VEKLAKTFNQHQ--ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred EeeEEEEeCCeE--EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 457888876533 4889999999999999999999999999999999998642 1222
Q ss_pred ----EEEcCCCccccCC------CCC---------------ccc----c-------c----cccccCCCChhHHHHHHHH
Q 025371 155 ----VIVDTSNEIGGDG------DIP---------------HSA----I-------G----TARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 155 ----~~~~~~~ei~~~~------~~~---------------~~~----~-------~----~~~~~~~~s~g~~~~~~l~ 194 (254)
.++.+...+.... ... ... . + ..+....+|+|++||++++
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 2222221110000 000 000 0 0 0122334699999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+..+|++||+|||++++|... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 165 RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999876 444444 489999999998876666665543
No 183
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=1.1e-21 Score=167.81 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=103.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCCCC-------------------eEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQK-------------------RVV 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~~~-------------------~i~ 155 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|++ +|+.|. .+.
T Consensus 3 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 3 IKDLHVSVEDKE--ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred EeeEEEEECCEE--EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 457888886533 488899999999999999999999999999999995 444221 022
Q ss_pred EEcCCCccccC--------------CC------CCccc----c-------cc-----ccccC-CCChhHHHHHHHHHHHc
Q 025371 156 IVDTSNEIGGD--------------GD------IPHSA----I-------GT-----ARRMQ-VPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 156 ~~~~~~ei~~~--------------~~------~~~~~----~-------~~-----~~~~~-~~s~g~~~~~~l~~al~ 198 (254)
++.+...+... .. ..... . +. .+... .+|+|++||+++++++.
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 22222111000 00 00000 0 00 11233 38999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHh-CChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII-KNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~-~~~~~ 246 (254)
.+|+++|+|||++++|... +.++.+.|.++|+++|+.+....+ ++.++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEE
Confidence 9999999999999999876 444445689999999998877765 55553
No 184
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.87 E-value=8.1e-22 Score=168.47 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------EEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-----------------~~~~ 159 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++++.| .+. ++.+
T Consensus 3 i~~l~~~~~~~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 3 IANISKRFGSFQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG-RIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEEEEEECCee--eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcCEEEEec
Confidence 457888886543 58899999999999999999999999999999999987633 222 2222
Q ss_pred CCccccC-C-----CC--C--ccc-------cc-----------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGD-G-----DI--P--HSA-------IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~-~-----~~--~--~~~-------~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+... . .. . ... +. ..+....+|+|++|++++++++..+|+++++|||++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111000 0 00 0 000 00 001223469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|..+ +.++.+. |.++|+++|..+....++++++
T Consensus 160 ~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~ 202 (237)
T TIGR00968 160 ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV 202 (237)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 999876 3333444 7899999999887666555543
No 185
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.1e-22 Score=174.57 Aligned_cols=149 Identities=17% Similarity=0.254 Sum_probs=103.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC--CeEE-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KRVV------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~--~~i~------------------- 155 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+++|..+ +.|.
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 5678888754222368899999999999999999999999999999999987642 3332
Q ss_pred EEcCCCc--cccC---C--CC--Cccc---------c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 156 IVDTSNE--IGGD---G--DI--PHSA---------I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 156 ~~~~~~e--i~~~---~--~~--~~~~---------~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++.+... +... . .+ .... + + ..+....+|+|++||+++++|+..+|++||+
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2222110 0000 0 00 0000 0 0 0122334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.+. |+++|+++|+.+.... +++++
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~-~d~i~ 214 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVL 214 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEE
Confidence 99999999876 3344443 8999999999877764 55543
No 186
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.87 E-value=7.4e-22 Score=185.33 Aligned_cols=147 Identities=18% Similarity=0.133 Sum_probs=106.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC----------CccccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------NEIGGD 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~----------~ei~~~ 166 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+|+|+|+++|+.|. +.+.... ..+.+.
T Consensus 6 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~-i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 6 ISQGTFRLSDTK--TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE-RQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEeEEEEcCCee--ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCce-EEECCcccccCCHHHHHHHhcee
Confidence 568888886543 588999999999999999999999999999999999886443 3221100 001110
Q ss_pred CCCC------------ccc----c-----------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 167 GDIP------------HSA----I-----------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 167 ~~~~------------~~~----~-----------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
.+.+ ... . + ..+....+|+||+||+++++|+..+|++||+|||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0000 000 0 0 0123345799999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|+.. +.++.+.|.++|+++|+.+....++++++
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~ 206 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAG 206 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEE
Confidence 99999876 44445568999999999877776666554
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.9e-22 Score=168.76 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=102.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC-EEEECCEEhhhCCHHHHHhhEEEe
Confidence 4578888754322357889999999999999999999999999999999988643 232 22
Q ss_pred cCCCccccC-----CCC--Cc---ccc-------c---------------cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD-----GDI--PH---SAI-------G---------------TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~-----~~~--~~---~~~-------~---------------~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+...+... ... .. ... . .......+|+|++||+++++++..+|+++|
T Consensus 82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 211111000 000 00 000 0 001233579999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|... +.++. .|.++|+++|+.+.... +++++
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v~ 207 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRIV 207 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEEE
Confidence 999999999876 33333 48899999999777665 55543
No 188
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.1e-22 Score=165.84 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=97.9
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC---cCCCCeEEEEcCC---------Cc
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQKRVVIVDTS---------NE 162 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~---~~~~~~i~~~~~~---------~e 162 (254)
+.++++.|... ....++.+++.+.+|++++|+||||||||||+++|+|+++ +..| .+.+.... ..
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce-EEEECCEECccchhhhcce
Confidence 45677777542 2235788889999999999999999999999999999998 5433 33221100 01
Q ss_pred cccCC----CCCcccc----c------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHH
Q 025371 163 IGGDG----DIPHSAI----G------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 221 (254)
Q Consensus 163 i~~~~----~~~~~~~----~------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~ 221 (254)
+.+.. .++...+ . .......+|+|++||+++++|+..+|+++|+|||++++|... +.++
T Consensus 85 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 85 IIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred EEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 11110 0111010 0 112345579999999999999999999999999999999876 3444
Q ss_pred HhC-CceE-EEEEchhhHHHHhCChhh
Q 025371 222 AER-GVML-IGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 222 ~~~-G~~v-i~t~H~~~~~~~~~~~~~ 246 (254)
.+. +.++ ++++|..+....++++++
T Consensus 165 ~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 165 ADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred HHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 444 5554 455666444444445443
No 189
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.87 E-value=6.5e-22 Score=166.96 Aligned_cols=148 Identities=17% Similarity=0.219 Sum_probs=101.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+.+|+.|. .+.++.
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 84 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVP 84 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeC
Confidence 45788877542223588899999999999999999999999999999999876332 122222
Q ss_pred CCCccccC-----CCC--Cc-c--cc-------cc----cc-----------ccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD-----GDI--PH-S--AI-------GT----AR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~-----~~~--~~-~--~~-------~~----~~-----------~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... ... .. . .. +. .. ....+|+|++||+++++++..+|++||+
T Consensus 85 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 85 QDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred CCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111000 000 00 0 00 00 01 1236899999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.+ +.++|+++|+.+..+ ++++++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~-~~d~v~ 209 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLLD-LVDRII 209 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH-hCCEEE
Confidence 99999999886 233333 479999999988765 555554
No 190
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=7.7e-22 Score=167.36 Aligned_cols=150 Identities=18% Similarity=0.165 Sum_probs=103.6
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC---cCCCC---------------eEEE
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQK---------------RVVI 156 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~---~~~~~---------------~i~~ 156 (254)
..+++++++.. ....++++++.+++|++++|+||||||||||+++|+|+++ ++.|. .+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~ 85 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEE
Confidence 56888988664 2446888999999999999999999999999999999998 65331 1222
Q ss_pred EcCCCccccC------------CCCCc--c------ccc--c----------ccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 157 VDTSNEIGGD------------GDIPH--S------AIG--T----------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 157 ~~~~~ei~~~------------~~~~~--~------~~~--~----------~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
+.+...+... ...+. . ... . .+....+|+|++||+++++++..+|+++
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~il 165 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEE
Confidence 2222111000 00000 0 000 0 0123346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchh-hHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGE-WLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~-~~~~~~~~~~~ 246 (254)
|+|||++++|+.+ +.++.+.|.++|+++|.. +....+.+.++
T Consensus 166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE
Confidence 9999999999876 334445688999999996 34444444443
No 191
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.1e-22 Score=168.59 Aligned_cols=146 Identities=15% Similarity=0.182 Sum_probs=101.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.++++++.... ..++++++.+.+|++++|+||||||||||+++|+|+++|..|. .+.++.
T Consensus 5 ~~~l~~~~~~~~-~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 5 FENVNFSYDEKK-PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEEEEEecCCCC-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 457888875321 2588899999999999999999999999999999999886432 122222
Q ss_pred CCCccccC-----CCC--Cc---ccc-------cc---------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD-----GDI--PH---SAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~-----~~~--~~---~~~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... ... +. ..+ .. ......+|+|++||+++++++..+|+++|+
T Consensus 84 q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 84 QDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred CCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 21111000 000 00 000 00 011246799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|... +.++. .|.++|+++|+.+.... ++++
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i 207 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-ADKI 207 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEE
Confidence 99999999876 33333 48899999999877665 4544
No 192
>PRK10436 hypothetical protein; Provisional
Probab=99.87 E-value=1.2e-20 Score=174.59 Aligned_cols=205 Identities=20% Similarity=0.235 Sum_probs=146.9
Q ss_pred CCCeEEEEEec---CCCcEEEEeccCCceeccccCCCHHHHHHHHHHh---cc---------cCCCceeEEcCc--eeEE
Q 025371 25 RGQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAV---GE---------FGGDNRAGIEGT--LHRI 87 (254)
Q Consensus 25 ~~~v~ei~i~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~---------~~~~~~~~~~~~--~~Rv 87 (254)
..+.+||||.+ +.++.+|++|.+. .+.. +..+....++.++ +. +++..+..+.+. .+|+
T Consensus 97 ~~~ASDIHi~p~~~~~~vr~RidG~l~--~~~~--~~~~~~~~l~~~ik~~a~ld~~e~r~pQdG~~~~~~~~~~~~~Rv 172 (462)
T PRK10436 97 QKRASDIHFEPAQNHYRIRLRIDGVLH--PLPD--PSPELGAALTARLKVLGNLDIAERRLPQDGQFTVELAGNAYSFRI 172 (462)
T ss_pred HcCCceEEEEEcCCceEEEEEECCEEE--EeCC--CChhHHHHHHHHHHHhCCChHHHHhccccccEEEEECCEEEEEEE
Confidence 47999999974 4577888888763 3332 3444444444332 22 123344445554 2899
Q ss_pred eEEecCCCcEEEEEEEECceeec--chh----------hhhccc-cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE
Q 025371 88 SAIRSRKGAIVGLTCRVGRAVSG--HID----------MVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (254)
Q Consensus 88 ~~~~~~~g~~~~l~ir~~~~~~~--~~~----------~l~~~i-~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i 154 (254)
+.++...|. ++++|....... .++ .+...+ .++..++++||+||||||+|.++...+... ..++
T Consensus 173 s~~p~~~Ge--~vvlRll~~~~~~~~L~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i 249 (462)
T PRK10436 173 ATLPCRGGE--KVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINI 249 (462)
T ss_pred EEeecCCCc--eEEEEEeccccCCCCHHHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEE
Confidence 999988886 899997544311 111 222223 456789999999999999999988887654 6789
Q ss_pred EEEcCCCccccCCCCCccccccccccCCC-ChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEc
Q 025371 155 VIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 233 (254)
Q Consensus 155 ~~~~~~~ei~~~~~~~~~~~~~~~~~~~~-s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H 233 (254)
+++|++.|+... .. .+.++. ..|..+..++..+|+++||+|+++|+++.+.+..+.+++.+||.|++|.|
T Consensus 250 ~TiEDPvE~~l~----gi-----~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlH 320 (462)
T PRK10436 250 CSVEDPVEIPLA----GI-----NQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLH 320 (462)
T ss_pred EEecCCccccCC----Cc-----ceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeec
Confidence 999999987432 11 112222 23567888999999999999999999999888888999999999999999
Q ss_pred hhhHHHHhCChh
Q 025371 234 GEWLENIIKNPI 245 (254)
Q Consensus 234 ~~~~~~~~~~~~ 245 (254)
++++..++.|..
T Consensus 321 a~~a~~ai~RL~ 332 (462)
T PRK10436 321 TNSTSETLVRLQ 332 (462)
T ss_pred cCChHHHHHHHH
Confidence 999999887764
No 193
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.87 E-value=4.8e-22 Score=169.75 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=102.8
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------E
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------I 156 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~ 156 (254)
+.++++++... ....++++++.+++|++++|+||||||||||+++|+|+++|..| .+. +
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC-EEEECCEehhhcCHHHHHhhEEE
Confidence 45788887532 12357889999999999999999999999999999999987643 222 2
Q ss_pred EcCCCccccC-----CCC--Cc---ccc-------cc---------------ccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 157 VDTSNEIGGD-----GDI--PH---SAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 157 ~~~~~ei~~~-----~~~--~~---~~~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
+.+...+... ... .. ... .. ......+|+|++||+++++++..+|++|
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred ECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 2221111000 000 00 000 00 0112357999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+|||++++|+.. +.++. .|.++|+++|+.+... ++++++.
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v~~ 209 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLIAV 209 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEEEE
Confidence 9999999999876 33333 6889999999987776 4565543
No 194
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=5.9e-22 Score=186.48 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=106.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++|.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 7 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 7 LKGIDKAFPGVK--ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred EeeeEEEeCCeE--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 567888886543 488999999999999999999999999999999999886332 12222
Q ss_pred cCCCccccC---------C-CC----Ccccc--------------c----cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD---------G-DI----PHSAI--------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~---------~-~~----~~~~~--------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+...+... . .. ..... + ..+....+|+||+||+++++||..+|++||
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVII 164 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 221111000 0 00 00000 0 012234569999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 165 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~ 213 (501)
T PRK10762 165 MDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTV 213 (501)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999876 344455688999999998777777666543
No 195
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.2e-21 Score=162.63 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=97.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC------CccccCCC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGDGD-- 168 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------~ei~~~~~-- 168 (254)
+.++++++.... ..+ +++.+++|++++|+|+||||||||+++|+|+.+++.| .+.+.+.. ..+.+...
T Consensus 4 ~~~l~~~~~~~~--l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 4 LHQLQFNIEQKN--LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG-NIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred EEEeeEEECCcE--EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCcccChhhhhhEEeccCCc
Confidence 457888886533 244 8888999999999999999999999999999988744 33321111 00111000
Q ss_pred --CCcccc------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-
Q 025371 169 --IPHSAI------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (254)
Q Consensus 169 --~~~~~~------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~- 217 (254)
.+.... + ..+....+|+|++|++++++++..+|+++++|||++++|...
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~ 159 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENR 159 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 000000 0 012233469999999999999999999999999999999876
Q ss_pred ------HHHHHhCCceEEEEEchhhHHHH
Q 025371 218 ------CRSIAERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 218 ------~~~~~~~G~~vi~t~H~~~~~~~ 240 (254)
+.+..+.|.++|+++|+.+....
T Consensus 160 ~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 160 DLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 22233568899999999764443
No 196
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=5.7e-22 Score=161.90 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=90.2
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe-------------EEEEcCCCccccCCCCCcccccc
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------VVIVDTSNEIGGDGDIPHSAIGT 176 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~-------------i~~~~~~~ei~~~~~~~~~~~~~ 176 (254)
..++++++.+.+|+.++|+|||||||||||+++.+ +.+.. +.++.+...+. .+.-.....
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~---~~~L~~~~~ 81 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLI---DVGLGYLTL 81 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHHHH---HcCCCcccc
Confidence 35788899999999999999999999999999863 11221 11211100000 000000001
Q ss_pred ccccCCCChhHHHHHHHHHHHccC--CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 177 ARRMQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 177 ~~~~~~~s~g~~~~~~l~~al~~~--P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
......+|+|++||+++++++..+ |+++++|||++++|... +.++.+.|.++|+++|+.+.... .+++
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~-~d~i 158 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS-ADWI 158 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-CCEE
Confidence 234556899999999999999999 99999999999999876 33444468999999999887654 5554
No 197
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.3e-22 Score=186.34 Aligned_cols=148 Identities=18% Similarity=0.276 Sum_probs=106.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~ei~~~--- 166 (254)
+.+++++++... .++++++.+.+|++++|+|||||||||||++|+|+++|+.|. ++.++.+...+...
T Consensus 4 i~~ls~~~~~~~--il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 4 TANITMQFGAKP--LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred EEEEEEEeCCcE--eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcH
Confidence 468888886543 588999999999999999999999999999999999886432 23333332111000
Q ss_pred ------CC---------------CC-----------------------c--cc-------ccc-----ccccCCCChhHH
Q 025371 167 ------GD---------------IP-----------------------H--SA-------IGT-----ARRMQVPEPSLQ 188 (254)
Q Consensus 167 ------~~---------------~~-----------------------~--~~-------~~~-----~~~~~~~s~g~~ 188 (254)
.. .+ . .. ++. .+....+|+||+
T Consensus 82 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 82 LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 00 00 0 00 000 023456799999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCchHHHHHHH---HH-HhCCceEEEEEchhhHHHHhCChhh
Q 025371 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 189 ~~~~l~~al~~~P~viilDEp~~~ld~~~~~---~~-~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||+++++++..+|++||+|||++++|+.... ++ .+.|.++|+++|+.+....++++++
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEE
Confidence 9999999999999999999999999998733 22 3458999999999887777666554
No 198
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.5e-22 Score=180.92 Aligned_cols=134 Identities=16% Similarity=0.212 Sum_probs=95.4
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--------------CccccC----CCCCccc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------------NEIGGD----GDIPHSA 173 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~--------------~ei~~~----~~~~~~~ 173 (254)
++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+-... ..+.+. ..+++..
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC-EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 6778888999999999999999999999999999988743 33221100 011111 0011100
Q ss_pred c-----------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---
Q 025371 174 I-----------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (254)
Q Consensus 174 ~-----------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--- 217 (254)
+ + ..+....+|+||+||+++++||..+|++||||||++++|+..
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~ 202 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE 202 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 0 0 012233469999999999999999999999999999999876
Q ss_pred ----HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 218 ----CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 ----~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.++.+ .|.|+|+++|+.+....++++++
T Consensus 203 l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 203 MQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 334433 48899999999877766666554
No 199
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-21 Score=162.50 Aligned_cols=147 Identities=17% Similarity=0.253 Sum_probs=106.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------I 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------~ 156 (254)
+.+++..|+... .+..+++.+++|++++|+|+||+||||||++|+|++++.. ++|. +
T Consensus 6 v~~l~~~YG~~~--~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~-G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 6 VENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS-GRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred EEeEeeccccee--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eeEEECCeecCCCCHHHHHhCCeEe
Confidence 567788887743 5889999999999999999999999999999999999762 3333 2
Q ss_pred EcCCCccccC---------CCCCcc---c-------c---------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 157 VDTSNEIGGD---------GDIPHS---A-------I---------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 157 ~~~~~ei~~~---------~~~~~~---~-------~---------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
+++.+++... +..... . + ...++-..+|||+||..+++|||+.+|+++++||
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 3332222110 000000 0 0 0013445679999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 209 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+.++.+.. +.++.++ |.||+.+.+....+-.+.++.+
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y 208 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY 208 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence 999887754 5566644 7899999998777777766654
No 200
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.1e-22 Score=185.77 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=105.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc--CCCCeE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQKRV-------------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~--~~~~~i-------------------- 154 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++| +. +.|
T Consensus 8 ~~nl~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 8 MKNITKTFGGVK--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE-GEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EeeeEEEeCCeE--eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCC-eEEEECCEECCCCCHHHHHHCCe
Confidence 457888886543 58899999999999999999999999999999999986 32 222
Q ss_pred EEEcCCCccccC----------CCC------Cccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCE
Q 025371 155 VIVDTSNEIGGD----------GDI------PHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 155 ~~~~~~~ei~~~----------~~~------~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
.++.+...+... ... .... . + ..+....+|+||+||+++++|+..+|++
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 222221111000 000 0000 0 0 0122345699999999999999999999
Q ss_pred EEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||+|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~ 215 (506)
T PRK13549 165 LILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICV 215 (506)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEE
Confidence 99999999999876 444455689999999998877776666543
No 201
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=168.89 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=102.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVV----------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~----------------- 155 (254)
+.++++++.... .++++++.+++|++++|+|+||||||||+++|+|++++. ..+.|.
T Consensus 10 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 10 TENLNLFYTDFK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred EeeeEEEeCCce--eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 457888876532 588999999999999999999999999999999999863 122222
Q ss_pred ----EEcCCCccccC---------CCC----Cccc----c-------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 156 ----IVDTSNEIGGD---------GDI----PHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 156 ----~~~~~~ei~~~---------~~~----~~~~----~-------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++.+...+... ... .... . + ..+....+|+|++||+++++++..
T Consensus 88 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 167 (254)
T PRK14273 88 RKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI 167 (254)
T ss_pred hceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 22111110000 000 0000 0 0 011233479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|... +.++. .+.++|+++|+.+....+.++++
T Consensus 168 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~ 220 (254)
T PRK14273 168 EPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTA 220 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999876 33443 47899999999887766666554
No 202
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.1e-22 Score=167.79 Aligned_cols=145 Identities=20% Similarity=0.244 Sum_probs=101.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.... ..++++++.+.+|++++|+||||||||||+++|+|+++++.| .+. ++
T Consensus 3 ~~~l~~~~~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 3 FENVTFAYDPGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEeCCCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEhhhCCHHHHHhhEEEE
Confidence 457888875321 257888999999999999999999999999999999987644 222 22
Q ss_pred cCCCccccC--------C--CCCcccc-------cc---------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD--------G--DIPHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~--------~--~~~~~~~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+...+... . ....... .. .+....+|+|++||++++++|..+|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 221111000 0 0000000 00 01123579999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+|||++++|... +.++.+ |.++|+++|+.+.... ++++
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~ 205 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKI 205 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEE
Confidence 999999999876 333334 8899999999877765 4444
No 203
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.3e-22 Score=171.68 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++++......++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~ 89 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIF 89 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEE
Confidence 45788887522123588899999999999999999999999999999999876332 122222
Q ss_pred CCC--ccccC------C------CCCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 159 TSN--EIGGD------G------DIPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 159 ~~~--ei~~~------~------~~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
+.. .+... . ....... + ..+....+|+|++||+++++|+..+|++||+|||
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 211 00000 0 0000000 0 0122345699999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChh
Q 025371 210 GTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~ 245 (254)
++++|..+ +.++.+. +.++|+++|+.+.... ++++
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~v 212 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKV 212 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhh-CCEE
Confidence 99999876 3344444 4899999999776654 5544
No 204
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=168.74 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=102.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i------------------ 154 (254)
+.++++++.... .++++++.+++|++++|+||||||||||+++|+|++++. ..+.|
T Consensus 6 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 6 IRDLKVSFGQVE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEeeEEEECCee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 457888876533 588999999999999999999999999999999998741 12222
Q ss_pred -EEEcCCCccccC---------C-CC-----Ccc----c-------cc--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 155 -VIVDTSNEIGGD---------G-DI-----PHS----A-------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 -~~~~~~~ei~~~---------~-~~-----~~~----~-------~~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+... . .. ... . ++ ..+....+|+|++||+++++|+..
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 222222111000 0 00 000 0 00 011223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++++|||++++|... +.++ ..|.++|+++|+.+....++++++
T Consensus 164 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~ 216 (250)
T PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVA 216 (250)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999876 3333 347899999999887665555543
No 205
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-21 Score=169.02 Aligned_cols=146 Identities=15% Similarity=0.157 Sum_probs=101.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-----cCCCCeE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRV----------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-----~~~~~~i----------------- 154 (254)
+.+++++++... .++.+++.+++|++++|+||||||||||+++|+|++. ++ .+.+
T Consensus 9 ~~~l~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 9 ARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV-EGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EeeeEEEECCee--eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC-ceEEEECCEEccccccCHHHH
Confidence 567888886532 5889999999999999999999999999999999864 22 2222
Q ss_pred ----EEEcCCCccccC--------C----CC-Cccc-----------ccc--------ccccCCCChhHHHHHHHHHHHc
Q 025371 155 ----VIVDTSNEIGGD--------G----DI-PHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 155 ----~~~~~~~ei~~~--------~----~~-~~~~-----------~~~--------~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.++.+...+... . .. .... ++. .+....+|+||+||+++++++.
T Consensus 86 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 86 RRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 222221111000 0 00 0000 000 0123347999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|... +.++ ..|.++|+++|+.+....+.++++
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~ 219 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTA 219 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEE
Confidence 9999999999999999876 3333 347899999999887766656553
No 206
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=8.1e-22 Score=167.76 Aligned_cols=133 Identities=18% Similarity=0.216 Sum_probs=93.1
Q ss_pred hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE--------------cCCCccccCCC----------
Q 025371 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV--------------DTSNEIGGDGD---------- 168 (254)
Q Consensus 113 ~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~--------------~~~~ei~~~~~---------- 168 (254)
+++++.+.+|++++|+||||||||||+++|+|+++|+.| .+.+. .+...+.....
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 456777999999999999999999999999999988643 33221 11111100000
Q ss_pred --CCcc---c----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHH
Q 025371 169 --IPHS---A----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI 221 (254)
Q Consensus 169 --~~~~---~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~ 221 (254)
.+.. . . + ..+....+|+|++||+++++++..+|++||+|||++++|... +.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 0000 0 0 0 002223469999999999999999999999999999999876 3344
Q ss_pred Hh-CCceEEEEEchhhHHHHhCChhh
Q 025371 222 AE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 222 ~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+ .|.++|+++|+.+....++++++
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~ 186 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVV 186 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 44 48899999999877666666554
No 207
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.87 E-value=1.6e-21 Score=168.30 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=102.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc----CCCC----------------eEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQK----------------RVVI 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~----~~~~----------------~i~~ 156 (254)
+.++++++ .. ..++++++.+.+|++++|+|+||||||||+++|+|+++| +.|. .+.+
T Consensus 7 ~~~l~~~~-~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~ 83 (254)
T PRK10418 7 LRNIALQA-AQ--PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIAT 83 (254)
T ss_pred EeCeEEEe-cc--ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEE
Confidence 45777777 22 358889999999999999999999999999999999987 4331 1222
Q ss_pred EcCCCccccCC---------------CCCccc---------ccc-------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 157 VDTSNEIGGDG---------------DIPHSA---------IGT-------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 157 ~~~~~ei~~~~---------------~~~~~~---------~~~-------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+.+.....+.. ...... ++. .+....+|+|++||+++++|+..+|++||
T Consensus 84 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 163 (254)
T PRK10418 84 IMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII 163 (254)
T ss_pred EecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 22221100000 000000 000 01224479999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|... +.++.+ .|.++|+++|+.+....++++++
T Consensus 164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE
Confidence 999999999875 444444 48899999999877766555543
No 208
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-21 Score=167.39 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------eEEEEcCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTS 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----------------~i~~~~~~ 160 (254)
+.+++++++.. .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++.+.
T Consensus 3 ~~~l~~~~~~~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 3 VENLSKDWKEF---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred eEeEEEEeCCc---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 45788888653 488889999999999999999999999999999999887432 12222221
Q ss_pred CccccCCC----------C---Ccccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 161 NEIGGDGD----------I---PHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 161 ~ei~~~~~----------~---~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+..... . ..... + ..+....+|+|++||+++++|+..+|+++++|||+++
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 11110000 0 00000 0 0122334699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.. .|.++++++|.......++++++.
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~ 202 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI 202 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 99876 333333 389999999998776665555443
No 209
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.6e-22 Score=171.85 Aligned_cols=151 Identities=21% Similarity=0.248 Sum_probs=105.4
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-cC---CCCeEEEEcCC----------
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE---FQKRVVIVDTS---------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-~~---~~~~i~~~~~~---------- 160 (254)
+.++++.+... ....++++++.+++||+++|+|.+||||||+.++|+|+++ +. .++.+.+-...
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~ 83 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELR 83 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHH
Confidence 45677766542 2456889999999999999999999999999999999998 32 12223222210
Q ss_pred ----CccccCCC------CCccccc---------------c----------ccc-------------cCCCChhHHHHHH
Q 025371 161 ----NEIGGDGD------IPHSAIG---------------T----------ARR-------------MQVPEPSLQHKVM 192 (254)
Q Consensus 161 ----~ei~~~~~------~~~~~~~---------------~----------~~~-------------~~~~s~g~~~~~~ 192 (254)
.++++..+ .|...++ . ... ...+||||+||++
T Consensus 84 ~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~ 163 (316)
T COG0444 84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVM 163 (316)
T ss_pred hhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHH
Confidence 01111000 0000000 0 000 1124999999999
Q ss_pred HHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 193 IEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|.|+..+|++||.||||+++|... +.++.+ .|.++|++||+..+...++++++-
T Consensus 164 IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V 226 (316)
T COG0444 164 IAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226 (316)
T ss_pred HHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE
Confidence 9999999999999999999999865 444443 699999999999999888887654
No 210
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.87 E-value=4.6e-22 Score=191.96 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=110.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
.+++++||....+..+++++..+++||.++|+|+||||||||+|.|.|++.|+.|. .+.++.
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 56999999888667899999999999999999999999999999999999997432 233333
Q ss_pred CCCccccC-------CCCCcc---cccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD-------GDIPHS---AIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~-------~~~~~~---~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... ...|.. .+.. ...-..+||||+||.++|||+..+|++||+
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 32222110 000000 0000 011123699999999999999999999999
Q ss_pred eCCCchHHHHHH----HHHH--hCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHAC----RSIA--ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~~----~~~~--~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|...- ..+. ..|.|+|+++|..+....+++-++
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiV 679 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV 679 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEE
Confidence 999999998762 2222 347999999999998888776544
No 211
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=1e-21 Score=168.79 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=93.6
Q ss_pred hccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------eEEEEcCCCccccCCC-----------CCc-cc----
Q 025371 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGD-----------IPH-SA---- 173 (254)
Q Consensus 116 ~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------~i~~~~~~~ei~~~~~-----------~~~-~~---- 173 (254)
...+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+......... ... ..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 98 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE 98 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHH
Confidence 3446789999999999999999999999999887442 3344443322111000 000 00
Q ss_pred c----c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhH
Q 025371 174 I----G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWL 237 (254)
Q Consensus 174 ~----~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~ 237 (254)
+ + ..+....+|+|++||++++++|..+|+++|+|||++++|... +.++.+ .|.++|+++|+.+.
T Consensus 99 ~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 99 IAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 0 0 012334579999999999999999999999999999999876 334433 48999999999888
Q ss_pred HHHhCChhh
Q 025371 238 ENIIKNPIL 246 (254)
Q Consensus 238 ~~~~~~~~~ 246 (254)
...++++++
T Consensus 179 ~~~~~d~i~ 187 (246)
T cd03237 179 IDYLADRLI 187 (246)
T ss_pred HHHhCCEEE
Confidence 887777654
No 212
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9e-22 Score=184.81 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=105.1
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEEc
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVD 158 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~~ 158 (254)
.+++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 2 ~nl~~~~~~~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 2 SNISKSFPGVK--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CceEEEeCCEE--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 36788886543 588999999999999999999999999999999999876332 122222
Q ss_pred CCCccccC---------CCCCcccc------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---------GDIPHSAI------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+...+... ........ + ..+....+|+||+||+++++++..+|++||+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 22111000 00000000 0 01223457999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~ 205 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT 205 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999876 34445668999999999887776666554
No 213
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.87 E-value=1.3e-21 Score=165.88 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=102.6
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
+.++++++... ....++.+++.+.+|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 93 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLV 93 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEE
Confidence 56788888542 123588999999999999999999999999999999999876432 12222
Q ss_pred cCCCccccC--------CCCCc--cc----------------c--c----cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD--------GDIPH--SA----------------I--G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~--------~~~~~--~~----------------~--~----~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+...+... ..... .. + + .......+|+|++||+++++++..+|++||
T Consensus 94 ~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 94 GQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred ecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222111000 00000 00 0 0 011233469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|... +.++. .+.++|+++|+.+.... +++++
T Consensus 174 lDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~i~ 219 (226)
T cd03248 174 LDEATSALDAESEQQVQQALYDWP-ERRTVLVIAHRLSTVER-ADQIL 219 (226)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHh-CCEEE
Confidence 999999999876 33333 36899999999877765 55543
No 214
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=2.1e-21 Score=163.79 Aligned_cols=147 Identities=11% Similarity=0.105 Sum_probs=102.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.++.++++... ..++++++.+.+|++++|+||||||||||+++|+|+++++.| .+.+
T Consensus 3 ~~~~~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 3 VTNGYFSWGSGL-ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG-KVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeEEecCCCC-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCcccccccccccchhhcce
Confidence 568888887542 368889999999999999999999999999999999987633 2222
Q ss_pred ---EcCCCccccC-----CCC--C--cccc-------cc---------------ccccCCCChhHHHHHHHHHHHccCCC
Q 025371 157 ---VDTSNEIGGD-----GDI--P--HSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 157 ---~~~~~ei~~~-----~~~--~--~~~~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
+.+...+... ... + .... +. ......+|+|++||+++++++..+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 2211110000 000 0 0000 00 01234579999999999999999999
Q ss_pred EEEEeCCCchHHHHHH---H------HHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 203 VIIVDEIGTEAEAHAC---R------SIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 203 viilDEp~~~ld~~~~---~------~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+||+|||++++|.... . .+.+.|.|+|+++|+.+.... .+.++
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~-~d~i~ 212 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH-ADWII 212 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh-CCEEE
Confidence 9999999999998752 1 223457899999999877664 55443
No 215
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.87 E-value=1.5e-21 Score=184.46 Aligned_cols=148 Identities=13% Similarity=0.142 Sum_probs=104.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCCCCeEEEEc----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVVIVD---------------- 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~~~~i~~~~---------------- 158 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|++ +|+. +.|.+..
T Consensus 3 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~-G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTS-GRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeE--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCc-eEEEEeccccccccccccccccc
Confidence 468888886543 588999999999999999999999999999999997 4553 3332210
Q ss_pred ------C---------------------CCccccCC-----CCCccc----c-------c--------------------
Q 025371 159 ------T---------------------SNEIGGDG-----DIPHSA----I-------G-------------------- 175 (254)
Q Consensus 159 ------~---------------------~~ei~~~~-----~~~~~~----~-------~-------------------- 175 (254)
. ...+.+.. .++... + +
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 0 00011100 000000 0 0
Q ss_pred --cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChh
Q 025371 176 --TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 176 --~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
..+....+|+||+||+++|+||..+|++||+|||++++|+.. +.++.. .|.+||+++|+.+....+++++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 012334579999999999999999999999999999999886 344434 4899999999988777666665
Q ss_pred hh
Q 025371 246 LS 247 (254)
Q Consensus 246 ~~ 247 (254)
+.
T Consensus 240 ~~ 241 (520)
T TIGR03269 240 IW 241 (520)
T ss_pred EE
Confidence 43
No 216
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.86 E-value=2.6e-21 Score=166.16 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=101.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCCCCeEE-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQKRVV------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~~~~i~------------------- 155 (254)
+.++++++.... .++++++.+++|++++|+|+||||||||+++|+|++ +++.| .+.
T Consensus 4 ~~nl~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 4 IKDLHVSVEDKA--ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred EEEEEEEeCCee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCce-EEEECCCccccCCHHHHhhcce
Confidence 457888886533 588899999999999999999999999999999995 45422 222
Q ss_pred -EEcCCCcccc-----------CCCC----Cc---c--ccc----------------ccccc-CCCChhHHHHHHHHHHH
Q 025371 156 -IVDTSNEIGG-----------DGDI----PH---S--AIG----------------TARRM-QVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 156 -~~~~~~ei~~-----------~~~~----~~---~--~~~----------------~~~~~-~~~s~g~~~~~~l~~al 197 (254)
++.+...+.. .... .. . ... ..+.. ..+|+|++||+++++|+
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 2211110000 0000 00 0 000 00111 15899999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHh-CChhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII-KNPIL 246 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~-~~~~~ 246 (254)
..+|++||+|||++++|... +.++.+.|.|+|+++|+.+....+ .+.++
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~ 217 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH 217 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE
Confidence 99999999999999999876 334445688999999998777765 55543
No 217
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=99.86 E-value=3.4e-20 Score=173.01 Aligned_cols=205 Identities=19% Similarity=0.217 Sum_probs=144.4
Q ss_pred CCCeEEEEEecC---CCcEEEEeccCCceeccccCCCHHHHHHHHH---Hhccc-------CCCce--eEEcCc--eeEE
Q 025371 25 RGQLLEVILDLG---RLPEARYLGEFGGKYLRSTEVSVEELEYAQS---AVGEF-------GGDNR--AGIEGT--LHRI 87 (254)
Q Consensus 25 ~~~v~ei~i~~g---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~l~~~-------~~~~~--~~~~~~--~~Rv 87 (254)
..+.+||||.+. .++.+|++|.+. .+.. ++.+.-..++. .++.. ..+.+ ..+.+. .+|+
T Consensus 121 ~~~ASDIHi~~~~~~~~vr~RidG~l~--~~~~--~~~~~~~~l~~~ik~~~~~d~~e~r~pQdg~~~~~~~~~~~~~Rv 196 (486)
T TIGR02533 121 KERASDIHIEPFEKALVVRFRVDGVLR--DVLS--PPKKLHAALVSRVKIMAKLNIAEKRLPQDGRISLRVGGRDIDIRV 196 (486)
T ss_pred HcCCCEEEEEECCCceEEEEEECCEEE--EcCC--CcHHHHHHHHHHHHHhcCChHHHHhhcCCcEEEEeeCCeeEEEEE
Confidence 478999999973 467888888763 3322 33333333333 23321 22333 334443 2899
Q ss_pred eEEecCCCcEEEEEEEECcee--ecch----------hhhhcccc-CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE
Q 025371 88 SAIRSRKGAIVGLTCRVGRAV--SGHI----------DMVYDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV 154 (254)
Q Consensus 88 ~~~~~~~g~~~~l~ir~~~~~--~~~~----------~~l~~~i~-~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i 154 (254)
+.++...|. ++++|..... ...+ +.+...+. ++..++|+|||||||||+++++...+++. +.++
T Consensus 197 s~~p~~~G~--~~vlRll~~~~~~~~l~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~i 273 (486)
T TIGR02533 197 STVPTSHGE--RVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNI 273 (486)
T ss_pred EEEecCCCc--eEEEEeccCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcE
Confidence 999988886 8999976532 1111 12223343 34579999999999999999888877654 6789
Q ss_pred EEEcCCCccccCCCCCccccccccccCC-CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEc
Q 025371 155 VIVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH 233 (254)
Q Consensus 155 ~~~~~~~ei~~~~~~~~~~~~~~~~~~~-~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H 233 (254)
++++++.|+... ... +..+ ...|..+..++..+|+++||+|+++|+++.+.+..+.+++.+||.|++|.|
T Consensus 274 iTiEDpvE~~~~----~~~-----q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlH 344 (486)
T TIGR02533 274 LTVEDPVEYQIE----GIG-----QIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLH 344 (486)
T ss_pred EEEcCCeeeecC----CCc-----eEEEccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEEC
Confidence 999999887432 111 1111 123567788999999999999999999999888888999999999999999
Q ss_pred hhhHHHHhCChh
Q 025371 234 GEWLENIIKNPI 245 (254)
Q Consensus 234 ~~~~~~~~~~~~ 245 (254)
++++..++.|..
T Consensus 345 a~sa~~ai~RL~ 356 (486)
T TIGR02533 345 TNDAAGAVTRLI 356 (486)
T ss_pred CCCHHHHHHHHH
Confidence 999999988765
No 218
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=2.3e-21 Score=163.68 Aligned_cols=146 Identities=12% Similarity=0.160 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.......++++++.+++|++++|+||||||||||+++|+|+++|..| .+. ++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~ 83 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISKIGLHDLRSRISII 83 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhHhCCHHHHhhhEEEE
Confidence 4578888754222368899999999999999999999999999999999988643 222 22
Q ss_pred cCCCccccC------C---CCCcccc-------c--c-------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 158 DTSNEIGGD------G---DIPHSAI-------G--T-------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 158 ~~~~ei~~~------~---~~~~~~~-------~--~-------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
.+...+... . ....... + . ......+|+|++||+++++++..+|+++|+
T Consensus 84 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llll 163 (221)
T cd03244 84 PQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVL 163 (221)
T ss_pred CCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222111000 0 0000000 0 0 013345799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|+.. +.++ ..+.++|+++|+.+....+ +.+
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~-d~i 207 (221)
T cd03244 164 DEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDS-DRI 207 (221)
T ss_pred eCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhC-CEE
Confidence 99999999876 2222 2468999999997766653 443
No 219
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.86 E-value=1.9e-21 Score=169.10 Aligned_cols=150 Identities=16% Similarity=0.193 Sum_probs=103.9
Q ss_pred EEEEEEEECc-------eeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------
Q 025371 97 IVGLTCRVGR-------AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~-------~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------- 156 (254)
+.++++++.. .....++++++.+.+|++++|+||||||||||+++|+|+++++.| .+.+
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG-~i~~~g~~~~~~~~~~~ 84 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG-NVSWRGEPLAKLNRAQR 84 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEeccccChhHH
Confidence 4577887752 012358899999999999999999999999999999999987643 2221
Q ss_pred ---------EcCCCccccCC--C-----------CCc--c--c---c-------c-----cccccCCCChhHHHHHHHHH
Q 025371 157 ---------VDTSNEIGGDG--D-----------IPH--S--A---I-------G-----TARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 157 ---------~~~~~ei~~~~--~-----------~~~--~--~---~-------~-----~~~~~~~~s~g~~~~~~l~~ 195 (254)
+.+.....+.. . ... . . . + ..+....+|+|++||+++++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~lar 164 (268)
T PRK10419 85 KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLAR 164 (268)
T ss_pred HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHH
Confidence 11111000000 0 000 0 0 0 0 01223346999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++..+|++||+|||++++|... +.++.+. |.++|+++|+.+....++++++.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~ 224 (268)
T PRK10419 165 ALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV 224 (268)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE
Confidence 9999999999999999999874 4444444 88999999998877766665543
No 220
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.3e-21 Score=171.20 Aligned_cols=148 Identities=20% Similarity=0.270 Sum_probs=103.4
Q ss_pred EEEEEEEECce----eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------
Q 025371 97 IVGLTCRVGRA----VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~----~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~----------------- 155 (254)
+.+++++|... ....++++++.+.+|++++|+|+||||||||+++|+|+++++.| .|.
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~ 85 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG-KVYVDGLDTSDEENLWDIRN 85 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeccccccHHHHhh
Confidence 46888888532 12368899999999999999999999999999999999998643 222
Q ss_pred ---EEcCCCc--cccC--------C----CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCE
Q 025371 156 ---IVDTSNE--IGGD--------G----DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 156 ---~~~~~~e--i~~~--------~----~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
++.+... +... . ..+... . + ..+....+|+|++||+++++++..+|++
T Consensus 86 ~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 165 (280)
T PRK13633 86 KAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPEC 165 (280)
T ss_pred heEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1111110 0000 0 000000 0 0 0123345699999999999999999999
Q ss_pred EEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+|||++++|... +.++.+ .|.|+|+++|+.+.... .++++
T Consensus 166 lllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~ 215 (280)
T PRK13633 166 IIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRII 215 (280)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEE
Confidence 99999999999876 334444 48999999999877665 44443
No 221
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=169.54 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=100.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-----cCCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-----~~~~~------------------- 152 (254)
+.+++++++... .++++++.+.+|++++|+|+||||||||+++|+|+.. ++.|.
T Consensus 24 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 24 VKDLSIYYGEKR--AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEEeCCce--eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 457888886533 4888999999999999999999999999999999863 33221
Q ss_pred -eEEEEcCCCccccCC---------CC-C--ccc-----c-------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGDG---------DI-P--HSA-----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~~---------~~-~--~~~-----~-------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++.++.+...+.... .. . ... . + ..+....+|+|++||+++++++..
T Consensus 102 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 102 REIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 122222211110000 00 0 000 0 0 012234479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|... +.++. .+.|+|+++|+.+....++++++
T Consensus 182 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~v~ 234 (268)
T PRK14248 182 KPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVTHNMQQALRVSDRTA 234 (268)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEEeCHHHHHHhCCEEE
Confidence 999999999999999876 33333 36899999999876665555543
No 222
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.9e-21 Score=168.42 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=101.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-----cCCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-----~~~~~------------------- 152 (254)
+.+++++++.. ..++++++.+++|++++|+||||||||||+++|+|++. |+.|.
T Consensus 16 ~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 16 VRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 45788887653 25888999999999999999999999999999999985 22221
Q ss_pred -eEEEEcCCCccccC------C---C----CCccc-----------cc--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGD------G---D----IPHSA-----------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~------~---~----~~~~~-----------~~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++.++.+...+... . . ..... ++ ..+....+|+|++||+++++|+..
T Consensus 94 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 94 AKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred cceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence 12222221111000 0 0 00000 00 011234479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|... +.++. .+.++|+++|+.+....+.++++
T Consensus 174 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 174 RPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999876 33333 47899999999877766666543
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=183.69 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=105.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.++
T Consensus 7 ~~~l~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 7 FDGIGKTFPGVK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred EeeeEEEECCEE--EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 457888886533 588999999999999999999999999999999999876332 12222
Q ss_pred cCCCccccC---------CCCCcc-c-c----------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 158 DTSNEIGGD---------GDIPHS-A-I----------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 158 ~~~~ei~~~---------~~~~~~-~-~----------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
.+...+... ...... . . + ..+....+|+||+||+++++++..+|++||+
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 221111000 000000 0 0 0 0122344799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~ 212 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITV 212 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999876 344445689999999998877776665543
No 224
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=1.2e-21 Score=177.66 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=96.6
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC----C--------------CccccC----CCC
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT----S--------------NEIGGD----GDI 169 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~----~--------------~ei~~~----~~~ 169 (254)
++++++.+++|++++|+|+||||||||+++|+|+++|+.| .|.+-.. . ..+.+. ..+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G-~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~ 118 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG-SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALM 118 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCC
Confidence 6778888999999999999999999999999999998743 3333210 0 011111 011
Q ss_pred Ccccccc---------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 170 PHSAIGT---------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 170 ~~~~~~~---------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
++..+.. .+....+|+||+||+++++||..+|++||+|||++++|+.
T Consensus 119 p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~ 198 (382)
T TIGR03415 119 PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPL 198 (382)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 1111000 0122235999999999999999999999999999999987
Q ss_pred H-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 217 A-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 217 ~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
. +.++.+ .|.|+|+++|+.+....++++++.
T Consensus 199 ~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v 237 (382)
T TIGR03415 199 IRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI 237 (382)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 6 444444 389999999998877666665543
No 225
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.9e-21 Score=173.88 Aligned_cols=151 Identities=20% Similarity=0.174 Sum_probs=104.2
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc----CCC-------------------
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQ------------------- 151 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~----~~~------------------- 151 (254)
+.+++++|... ....++++++.+.+|++++|+|+||||||||+++|+|++++ +.|
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 45778877321 12358899999999999999999999999999999999863 211
Q ss_pred ---CeEEEEcCCCccccC--------------CC-C-C----c-----ccc-------cc-------ccccCCCChhHHH
Q 025371 152 ---KRVVIVDTSNEIGGD--------------GD-I-P----H-----SAI-------GT-------ARRMQVPEPSLQH 189 (254)
Q Consensus 152 ---~~i~~~~~~~ei~~~--------------~~-~-~----~-----~~~-------~~-------~~~~~~~s~g~~~ 189 (254)
.++.++.|.....+. .. . . . ... +. .+....+|+||+|
T Consensus 86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~Q 165 (330)
T PRK15093 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQ 165 (330)
T ss_pred HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 123333332210000 00 0 0 0 000 00 0112246999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 190 KVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 190 ~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+++++||..+|++||+|||++++|... +.++.+ .|.++|++||+.+....++++++.
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 9999999999999999999999999876 444444 489999999998888777776643
No 226
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.2e-21 Score=169.44 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=101.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCCeEEE---------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVVI--------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~~i~~--------------- 156 (254)
+.+++++++... .++++++.+.+|++++|+|+||||||||+++|+|++++ + .+.|.+
T Consensus 15 ~~~l~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 15 VENLNLWYGEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI-EGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EeeeEEEeCCee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCc-ceEEEECCEEcccccchHHHH
Confidence 457888776432 58889999999999999999999999999999999874 2 222221
Q ss_pred ------EcCCCccccC---------C---CCCccc-----------ccc--------ccccCCCChhHHHHHHHHHHHcc
Q 025371 157 ------VDTSNEIGGD---------G---DIPHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 157 ------~~~~~ei~~~---------~---~~~~~~-----------~~~--------~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
+.+...+... . ...... ++. .+....+|+|++||+++++||..
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 92 RKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1111110000 0 000000 000 01223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++|+|||++++|..+ +.++. .|.++|+++|+.+....++++++
T Consensus 172 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 172 KPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999876 33333 47899999999877766666554
No 227
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.7e-21 Score=170.32 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=103.9
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe------------------EEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~------------------i~~~ 157 (254)
+.++++++... ....++++++.+.+|++++|+|+||||||||+++|+|+++|+.|.. +.++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 86 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMV 86 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEE
Confidence 56888888642 1235889999999999999999999999999999999998864421 1222
Q ss_pred cCCCc--cccC------C------CCCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 158 DTSNE--IGGD------G------DIPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 158 ~~~~e--i~~~------~------~~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
.+... +... . ....... + ..+....+|+|++||+++++++..+|++||+||
T Consensus 87 ~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDE 166 (277)
T PRK13642 87 FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166 (277)
T ss_pred EECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 22111 0000 0 0000000 0 012233469999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 209 IGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++++|... +.++.+. |.|+|+++|+.+.... .++++
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~-~d~i~ 211 (277)
T PRK13642 167 STSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRIL 211 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 999999876 3344444 8999999999887764 55543
No 228
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=181.28 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=105.5
Q ss_pred EEEEEEEECcee-ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC------Cccc-----
Q 025371 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIG----- 164 (254)
Q Consensus 97 ~~~l~ir~~~~~-~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------~ei~----- 164 (254)
+.++++++.... ...++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+-+.. ..+.
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~~i~~~~~l~~~lTV 102 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAALIAISSGLNGQLTG 102 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEeeeEEeccccCCCCcH
Confidence 457777765531 1257889999999999999999999999999999999988743 33221110 0000
Q ss_pred -----cCC---CCCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH----
Q 025371 165 -----GDG---DIPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 217 (254)
Q Consensus 165 -----~~~---~~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---- 217 (254)
+.. ....... + ..+....+|+|++||+++++|+..+|++||+|||++++|...
T Consensus 103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 000 0000000 0 012334579999999999999999999999999999999875
Q ss_pred ---HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 218 ---CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 ---~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+.|.++|+++|+.+....++++++.
T Consensus 183 lelL~el~~~G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 183 LDKMNEFKEQGKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 344455689999999998877766666543
No 229
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.86 E-value=2e-21 Score=164.15 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=102.7
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE------------------
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------ 156 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------ 156 (254)
+.++++++... ....++++++.+.+|++++|+|+||||||||+++|+|+++++.| .|.+
T Consensus 4 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~ 82 (220)
T TIGR02982 4 IRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQELYGASEKELVQLRR 82 (220)
T ss_pred EEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEhHhcCHhHHHHHHh
Confidence 45777777531 12358889999999999999999999999999999999987633 2222
Q ss_pred ----EcCCCccccCCCC---------Cccccc--------------------cccccCCCChhHHHHHHHHHHHccCCCE
Q 025371 157 ----VDTSNEIGGDGDI---------PHSAIG--------------------TARRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 157 ----~~~~~ei~~~~~~---------~~~~~~--------------------~~~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
+.+...+...... .+.... ..+....+|+|++||+++++++..+|++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i 162 (220)
T TIGR02982 83 NIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL 162 (220)
T ss_pred heEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2211111000000 000000 0012233599999999999999999999
Q ss_pred EEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+|||++++|... +.++.+ .|.++|+++|+.+..+ +++.++.
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~-~~d~v~~ 213 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVH 213 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEE
Confidence 99999999999876 334444 4899999999988664 5666544
No 230
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=1.2e-21 Score=166.56 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=95.0
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc----CCCC----------------eEEEEcCCCc--cccCC--
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD----EFQK----------------RVVIVDTSNE--IGGDG-- 167 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~----~~~~----------------~i~~~~~~~e--i~~~~-- 167 (254)
++++++.+++|++++|+||||||||||+++|+|+++| +.|. .+.++.+... +....
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 4567788999999999999999999999999999987 4331 1222222211 00000
Q ss_pred -----------CCCccc-------------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-
Q 025371 168 -----------DIPHSA-------------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (254)
Q Consensus 168 -----------~~~~~~-------------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~- 217 (254)
...... +. ..+....+|+|++||+++++++..+|+++|+|||++++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 000000 00 011233479999999999999999999999999999999876
Q ss_pred ------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 218 ------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 ------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+ .|.++|+++|+.+....+.++++.
T Consensus 162 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 198 (230)
T TIGR02770 162 ARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV 198 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 334444 388999999998877766665543
No 231
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-21 Score=168.89 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=102.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCCeE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRV----------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~~i----------------- 154 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|++++ + .+.+
T Consensus 16 i~nl~~~~~~~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~-~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 16 LQNVTISYGTFE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL-KGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEeEEEEECCEE--EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC-ceEEEECCEEcccccCCHHHH
Confidence 467888876533 58899999999999999999999999999999999762 3 2222
Q ss_pred ----EEEcCCCccccC---------C---CCCcc--c--------cc--------cccccCCCChhHHHHHHHHHHHccC
Q 025371 155 ----VIVDTSNEIGGD---------G---DIPHS--A--------IG--------TARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 155 ----~~~~~~~ei~~~---------~---~~~~~--~--------~~--------~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
.++.+...+... . ..... . +. ..+....+|+|++||+++++|+..+
T Consensus 93 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred hhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 222221111000 0 00000 0 00 0112234799999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++||+|||++++|... +.++ ..+.++|+++|+.+....++++++.
T Consensus 173 p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 173 PEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 99999999999999876 3333 3468999999998777766666543
No 232
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=181.98 Aligned_cols=148 Identities=19% Similarity=0.299 Sum_probs=110.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~ei~~~--- 166 (254)
+.++++.++.... ++.++..+.+|+.++|+|+||+|||||||+|+|...|+.|. ++.++.|.......
T Consensus 6 ~~~ls~~~g~~~l--~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 6 LENLSLAYGDRPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred EeeeEEeeCCcee--ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccH
Confidence 4578888866654 88999999999999999999999999999999999886432 44555443322110
Q ss_pred ------CC----------------CCcc-------------------------------cccc-ccccCCCChhHHHHHH
Q 025371 167 ------GD----------------IPHS-------------------------------AIGT-ARRMQVPEPSLQHKVM 192 (254)
Q Consensus 167 ------~~----------------~~~~-------------------------------~~~~-~~~~~~~s~g~~~~~~ 192 (254)
.. .+.. .+.. .+.+..+|||++.|++
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~ 163 (530)
T COG0488 84 LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVA 163 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHH
Confidence 00 0000 0000 2345567999999999
Q ss_pred HHHHHccCCCEEEEeCCCchHHHHHHH---HHH-h-CCceEEEEEchhhHHHHhCChhhh
Q 025371 193 IEAVENHMPEVIIVDEIGTEAEAHACR---SIA-E-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~ld~~~~~---~~~-~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||++|..+||+|+|||||+.||..++. ... + .| ++|+++|+..+.+.++..++.
T Consensus 164 LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEE
Confidence 999999999999999999999998833 322 3 36 999999999999999887765
No 233
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.86 E-value=1.5e-21 Score=166.82 Aligned_cols=136 Identities=19% Similarity=0.241 Sum_probs=96.1
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc-CCCccccC-----
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD-TSNEIGGD----- 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~-~~~ei~~~----- 166 (254)
.++++++.+.+|++++|+|+||||||||+++|+|+++|+.| .+. ++. +...+...
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 47888889999999999999999999999999999987643 222 211 11111000
Q ss_pred -----CC---CCcccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH------
Q 025371 167 -----GD---IPHSAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------ 217 (254)
Q Consensus 167 -----~~---~~~~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~------ 217 (254)
.. ...... + ..+....+|+|++|++++++++..+|+++|+|||++++|...
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 194 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRN 194 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 00 000000 0 001223469999999999999999999999999999999876
Q ss_pred -HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 218 -CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 -~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+ .|.++|+++|+.+....+.++++.
T Consensus 195 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 226 (236)
T cd03267 195 FLKEYNRERGTTVLLTSHYMKDIEALARRVLV 226 (236)
T ss_pred HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE
Confidence 334434 378999999998877776666544
No 234
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-21 Score=165.93 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=101.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVV----------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~----------------- 155 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+ ..+.|.
T Consensus 7 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 7 TVNLRVYYGSNH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EEeEEEEeCCee--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 457888886533 588999999999999999999999999999999998763 122222
Q ss_pred ----EEcCCCccccC---------C----CC--Cccc-----------cc--------cccccCCCChhHHHHHHHHHHH
Q 025371 156 ----IVDTSNEIGGD---------G----DI--PHSA-----------IG--------TARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 156 ----~~~~~~ei~~~---------~----~~--~~~~-----------~~--------~~~~~~~~s~g~~~~~~l~~al 197 (254)
++.+...+... . .. +... ++ ..+....+|+|++||+++++++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 22111111000 0 00 0000 00 0012234699999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|++||+|||++++|... +.++. .+.++|+++|+.+....++++++
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHhhCCEEE
Confidence 99999999999999999876 33333 36899999999887666655543
No 235
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=3.6e-22 Score=159.97 Aligned_cols=146 Identities=19% Similarity=0.226 Sum_probs=105.2
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-------C-Ccc-------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------S-NEI------- 163 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-------~-~ei------- 163 (254)
++..||+... .++.++.....|+.+.|+|.+|||||||||||.=+..|..| +|.+-.+ . ..+
T Consensus 11 dlHK~~G~~e--VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G-~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 11 DLHKRYGEHE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG-SIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred HHHhhcccch--hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCc-eEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 4555555543 37778888999999999999999999999999999888743 3332111 0 000
Q ss_pred --------ccC----CCCCcccc------------c------------------c----ccccCCCChhHHHHHHHHHHH
Q 025371 164 --------GGD----GDIPHSAI------------G------------------T----ARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 164 --------~~~----~~~~~~~~------------~------------------~----~~~~~~~s~g~~~~~~l~~al 197 (254)
... ....|+.+ + . ......+|||++||++|||||
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaL 167 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHH
Confidence 000 00011100 0 0 011123599999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++.|+++++|||++.+|++. +.++++.|.|++.+||...++..+...++.
T Consensus 168 ameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~f 224 (256)
T COG4598 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF 224 (256)
T ss_pred hcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEE
Confidence 99999999999999999976 677889999999999999998888877665
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.86 E-value=3.2e-21 Score=166.01 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=101.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhc--cCcCCCCeEE-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRVV------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~--~~~~~~~~i~------------------- 155 (254)
+.++++++... ..++++++.+++|++++|+|+||||||||+++|+|+ ++++.| .+.
T Consensus 10 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 10 IKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG-DILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc-eEEECCEEcccCChhhhheeeE
Confidence 45788887643 258899999999999999999999999999999997 344422 221
Q ss_pred -EEcCCCcc-c---------cCCC-------CCccc--------------cc-----cccccC-CCChhHHHHHHHHHHH
Q 025371 156 -IVDTSNEI-G---------GDGD-------IPHSA--------------IG-----TARRMQ-VPEPSLQHKVMIEAVE 197 (254)
Q Consensus 156 -~~~~~~ei-~---------~~~~-------~~~~~--------------~~-----~~~~~~-~~s~g~~~~~~l~~al 197 (254)
++.+...+ . .... ..... ++ ..+... .+|+|++||+++++++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 12111100 0 0000 00000 00 011222 3899999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHh-CChhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII-KNPIL 246 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~-~~~~~ 246 (254)
..+|++||+|||++++|... +.++.+.|.|+|+++|+.+....+ +++++
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~ 223 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVH 223 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEE
Confidence 99999999999999999876 334445689999999998877654 55543
No 237
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=165.89 Aligned_cols=147 Identities=15% Similarity=0.111 Sum_probs=103.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC----CCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~----~~~i------------------ 154 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|+++|+. .+.|
T Consensus 7 ~~~l~~~~~~~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 84 (251)
T PRK14249 7 IRGVNFFYHKH--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLR 84 (251)
T ss_pred EEEEEEEECCe--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhh
Confidence 45788888653 25889999999999999999999999999999999998752 1222
Q ss_pred ---EEEcCCCccccC---------CC---CC-cc---c-c-------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 155 ---VIVDTSNEIGGD---------GD---IP-HS---A-I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 ---~~~~~~~ei~~~---------~~---~~-~~---~-~-------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+... .. .. .. . . + ..+....+|+|++||+++++++..
T Consensus 85 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 85 KRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred ceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 222222111000 00 00 00 0 0 0 012223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++|+|||++++|... +.++ ..|.|+|+++|+.+....+++.++
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~ 217 (251)
T PRK14249 165 EPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTG 217 (251)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEE
Confidence 999999999999999876 3333 357899999999877776655554
No 238
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2e-21 Score=167.12 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=101.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc--C--CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~--~--~~~~i------------------ 154 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|+.++ . ..+.|
T Consensus 6 ~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14240 6 VKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83 (250)
T ss_pred EEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHh
Confidence 45788887653 258899999999999999999999999999999998752 1 12222
Q ss_pred ---EEEcCCCccccC---------C---CC-Ccccc-----------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 155 ---VIVDTSNEIGGD---------G---DI-PHSAI-----------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 ---~~~~~~~ei~~~---------~---~~-~~~~~-----------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+... . .. +.... . ..+....+|+|++||+++++++..
T Consensus 84 ~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 84 KRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 222221111000 0 00 00000 0 011234579999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++|++|||++++|..+ +.++ ..+.++|+++|+.+....+.++++
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~ 216 (250)
T PRK14240 164 EPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTA 216 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEE
Confidence 999999999999999876 3333 347899999999876666555543
No 239
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.86 E-value=2.1e-21 Score=182.70 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=106.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc--CCCC-------------------eEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--EFQK-------------------RVV 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~--~~~~-------------------~i~ 155 (254)
+.+++++|.... .++++++.+.+|++++|+||||||||||+++|+|+++| +.|. ++.
T Consensus 4 i~~l~~~~~~~~--il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 4 MKGIVKTFGGVK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEeEEEEeCCeE--eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 467888886543 58899999999999999999999999999999999876 3221 122
Q ss_pred EEcCCCccccC----------CCC-------Cccc----c-------cc-----ccccCCCChhHHHHHHHHHHHccCCC
Q 025371 156 IVDTSNEIGGD----------GDI-------PHSA----I-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 156 ~~~~~~ei~~~----------~~~-------~~~~----~-------~~-----~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
++.+...+... ... .... . +. .+....+|+||+||+++|++|..+|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 33222111000 000 0000 0 00 01244579999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+||+|||++++|+.. +.++.+.|.++|+++|+.+....++++++.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~ 213 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICV 213 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEE
Confidence 999999999999876 444456689999999998877777666543
No 240
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.9e-21 Score=168.55 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=102.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i------------------ 154 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|++.+. ..+.+
T Consensus 23 ~~nl~~~~~~~~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 23 VEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EeeEEEEeCCeE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 457888876543 588899999999999999999999999999999997531 12222
Q ss_pred ---EEEcCCCccccC--------CC----CCcc---c-------cc--------cccccCCCChhHHHHHHHHHHHccCC
Q 025371 155 ---VIVDTSNEIGGD--------GD----IPHS---A-------IG--------TARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 155 ---~~~~~~~ei~~~--------~~----~~~~---~-------~~--------~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
.++.+...+... .. .... . .+ ..+....+|+|++||+++++|+..+|
T Consensus 101 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p 180 (274)
T PRK14265 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP 180 (274)
T ss_pred hcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence 222222111000 00 0000 0 00 01222347999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++||+|||++++|... +.++. .+.++|+++|+.+....+.++++.
T Consensus 181 ~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~ 232 (274)
T PRK14265 181 DVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQQASRVADWTAF 232 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999876 33333 368999999998877776666544
No 241
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.86 E-value=3.4e-21 Score=167.93 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=103.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC-------CCeEE--------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKRVV-------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~-------~~~i~-------------- 155 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++++. .+.+.
T Consensus 4 ~~nl~~~~~~~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 4 ADHLHVARRHRA--ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEEEEEECCEe--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 457888876543 4889999999999999999999999999999999998751 12222
Q ss_pred -----EEcCCCccccC---------CCCCcc---c---------cc-----------cccccCCCChhHHHHHHHHHHHc
Q 025371 156 -----IVDTSNEIGGD---------GDIPHS---A---------IG-----------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 156 -----~~~~~~ei~~~---------~~~~~~---~---------~~-----------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
++.+.....+. ...+.. . .. ..+....+|+|++||+++++++.
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 22221110000 000000 0 00 00223346999999999999999
Q ss_pred ---------cCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 199 ---------HMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ---------~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|... +.++.++ |.++|+++|+.+....++++++
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 4999999999999999876 3444444 8999999999877766666554
No 242
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3e-21 Score=167.80 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=102.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCCeEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVV---------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~~i~---------------- 155 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|++++ + .+.|.
T Consensus 22 ~~nl~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 22 ARDVSVFYGEKQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV-TGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEeEEEEECCEE--EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC-ceEEEECCEECcccccchHHH
Confidence 457888886533 58899999999999999999999999999999999864 3 22222
Q ss_pred -----EEcCCCccccC---------C---CC--Ccccc-----------cc--------ccccCCCChhHHHHHHHHHHH
Q 025371 156 -----IVDTSNEIGGD---------G---DI--PHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 156 -----~~~~~~ei~~~---------~---~~--~~~~~-----------~~--------~~~~~~~s~g~~~~~~l~~al 197 (254)
++.+...+... . .. ..... +. .+....+|+|++||+++++++
T Consensus 99 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 99 RARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 22211110000 0 00 00000 00 012344799999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|++||+|||++++|... +.++. .+.|+|+++|+.+....++++++
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~~~tiiivtH~~~~~~~~~d~v~ 233 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELR-QNYTIVIVTHSMQQAARVSQRTA 233 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-cCCeEEEEEcCHHHHHhhCCEEE
Confidence 99999999999999999876 33333 36899999999887766666553
No 243
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=3.2e-20 Score=169.67 Aligned_cols=204 Identities=21% Similarity=0.239 Sum_probs=146.0
Q ss_pred CCeEEEEEecCC---CcEEEEeccCCceeccccCCCHHHHHHHHHHh---ccc---------CCCceeEEcCce--eEEe
Q 025371 26 GQLLEVILDLGR---LPEARYLGEFGGKYLRSTEVSVEELEYAQSAV---GEF---------GGDNRAGIEGTL--HRIS 88 (254)
Q Consensus 26 ~~v~ei~i~~g~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~---------~~~~~~~~~~~~--~Rv~ 88 (254)
.+.+||||-+-. .+.+|++|.+. ... .+..+-...++.++ ++. ++..+..+.+.- +|++
T Consensus 138 ~~ASDIHiep~~~~~~IrfRidGvL~--~~~--~~~~~~~~~lvsriK~ma~LDIaErR~PQdGr~~~~~~~~~vd~RvS 213 (500)
T COG2804 138 EGASDIHIEPRENRYRIRFRIDGVLR--EVL--EPPKELAAALVSRLKVMAGLDIAERRLPQDGRIRLKLNGRKVDFRVS 213 (500)
T ss_pred cCCCceEEEeccCeEEEEEEECCEee--ehh--ccCHHHHHHHHHHHHHHhcCchhhccCCCCceEEEEeCCeeEEEEEe
Confidence 689999998433 34445566552 222 23355555566554 222 233444555543 8999
Q ss_pred EEecCCCcEEEEEEEECceeecc------------hhhhhccc-cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE
Q 025371 89 AIRSRKGAIVGLTCRVGRAVSGH------------IDMVYDLL-HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (254)
Q Consensus 89 ~~~~~~g~~~~l~ir~~~~~~~~------------~~~l~~~i-~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~ 155 (254)
.++...|. .+.+|...+.... ...+...+ ++...++++||+||||||+|.++...+... ..+|+
T Consensus 214 tlP~~~GE--kvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~ 290 (500)
T COG2804 214 TLPTFYGE--KVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNII 290 (500)
T ss_pred cCCCCCCc--EEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEE
Confidence 99998887 8888886544311 11222223 455689999999999999999999988754 66799
Q ss_pred EEcCCCccccCCCCCccccccccccCC-CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEch
Q 025371 156 IVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (254)
Q Consensus 156 ~~~~~~ei~~~~~~~~~~~~~~~~~~~-~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~ 234 (254)
++|++.|+...+ +. ++++ ..-|..+..++.+.|+++||+|+++|+++.++++.+.+++.+||.|++|.|+
T Consensus 291 TiEDPVE~~~~g-I~--------Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHt 361 (500)
T COG2804 291 TIEDPVEYQLPG-IN--------QVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHT 361 (500)
T ss_pred EeeCCeeeecCC-cc--------eeecccccCCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeeccc
Confidence 999999985321 11 2222 1356778889999999999999999999999999999999999999999999
Q ss_pred hhHHHHhCChh
Q 025371 235 EWLENIIKNPI 245 (254)
Q Consensus 235 ~~~~~~~~~~~ 245 (254)
+++..++.|..
T Consensus 362 nda~~ai~RL~ 372 (500)
T COG2804 362 NDAPGAITRLL 372 (500)
T ss_pred CchHHHHHHHH
Confidence 99998887643
No 244
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.5e-21 Score=182.43 Aligned_cols=149 Identities=17% Similarity=0.249 Sum_probs=106.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCc--cccC-
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE--IGGD- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~e--i~~~- 166 (254)
+.+++++|.... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+... +...
T Consensus 322 ~~~l~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 322 VENLTKGFDNGP--LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEeeEEeeCCce--eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 457777775532 478899999999999999999999999999999999886432 2344444321 1100
Q ss_pred ------CCC--Cc--c-c-------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH--
Q 025371 167 ------GDI--PH--S-A-------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-- 221 (254)
Q Consensus 167 ------~~~--~~--~-~-------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~-- 221 (254)
... .. . . ++ ..+....+|+||+||+++++++..+|++||+|||++++|......+
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 000 00 0 0 00 0123455799999999999999999999999999999999873332
Q ss_pred --HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 222 --AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 222 --~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.+.+.++|+++|+.+....++++++.
T Consensus 480 ~l~~~~~tvi~vsHd~~~~~~~~d~i~~ 507 (530)
T PRK15064 480 ALEKYEGTLIFVSHDREFVSSLATRIIE 507 (530)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 23356999999998888877776654
No 245
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=3.5e-21 Score=183.33 Aligned_cols=149 Identities=15% Similarity=0.189 Sum_probs=107.5
Q ss_pred EEEEEEEEC-ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCccccC--
Q 025371 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~-~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~ei~~~-- 166 (254)
+.+++++|+ ... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+...+...
T Consensus 9 i~~l~~~y~~~~~--il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 86 (556)
T PRK11819 9 MNRVSKVVPPKKQ--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKT 86 (556)
T ss_pred EeeEEEEeCCCCe--eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCc
Confidence 568888886 433 588999999999999999999999999999999999886432 23444443221100
Q ss_pred -------CC------------------CCcc--------------------------c---------c-ccccccCCCCh
Q 025371 167 -------GD------------------IPHS--------------------------A---------I-GTARRMQVPEP 185 (254)
Q Consensus 167 -------~~------------------~~~~--------------------------~---------~-~~~~~~~~~s~ 185 (254)
.. .+.. . + ...+....+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg 166 (556)
T PRK11819 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSG 166 (556)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCH
Confidence 00 0000 0 0 00123345799
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH----HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 186 g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~----~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||+||+++++++..+|++||+|||++++|......+ .+.+.++|+++|+.+....+++.++.
T Consensus 167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~ 232 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILE 232 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE
Confidence 999999999999999999999999999999873322 23356999999998888777665543
No 246
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=185.95 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=107.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCC-c-----c
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-----I 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~-e-----i 163 (254)
+.+++++++... .++++++.|.+|++++|+||||||||||||+|+|+++|+.|. ++.++++.. . +
T Consensus 4 i~nls~~~g~~~--~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~ 81 (638)
T PRK10636 4 FSSLQIRRGVRV--LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPAL 81 (638)
T ss_pred EEEEEEEeCCce--eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHH
Confidence 568899887654 489999999999999999999999999999999999887442 122232211 0 0
Q ss_pred ccCCC---------------------------------CCccc-----------cc-----cccccCCCChhHHHHHHHH
Q 025371 164 GGDGD---------------------------------IPHSA-----------IG-----TARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 164 ~~~~~---------------------------------~~~~~-----------~~-----~~~~~~~~s~g~~~~~~l~ 194 (254)
.+... ..... ++ ..+.+..+|+|++||++++
T Consensus 82 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA 161 (638)
T PRK10636 82 EYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLA 161 (638)
T ss_pred HHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHH
Confidence 00000 00000 00 0123345799999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHHHHH---H-HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHACRS---I-AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~~~~---~-~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++|..+|++||||||++++|...... + .+.+.++|+++|+......++++++.
T Consensus 162 ~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 218 (638)
T PRK10636 162 QALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH 218 (638)
T ss_pred HHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEE
Confidence 99999999999999999999987333 2 23467999999998888877776543
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.7e-21 Score=164.98 Aligned_cols=147 Identities=16% Similarity=0.150 Sum_probs=102.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC----CCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~----~~~i------------------ 154 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+. .+.|
T Consensus 7 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 7 AQDVNIYYGDKQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred EeeeEEEECCEE--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 467888886533 5889999999999999999999999999999999987531 1222
Q ss_pred ---EEEcCCCccccC-------------CCCCccc------------cc--------cccccCCCChhHHHHHHHHHHHc
Q 025371 155 ---VIVDTSNEIGGD-------------GDIPHSA------------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 155 ---~~~~~~~ei~~~-------------~~~~~~~------------~~--------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.++.+...+... ....... .. ..+....+|+|++||+++++++.
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 222221111000 0000000 00 01122347999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|... +.++. .+.++|+++|+.+....++++++
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999876 33333 47899999999887776666553
No 248
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.7e-21 Score=185.68 Aligned_cols=149 Identities=15% Similarity=0.244 Sum_probs=106.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCC--ccccC-
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN--EIGGD- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~--ei~~~- 166 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.. .+...
T Consensus 315 ~~~l~~~y~~~~--il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 315 MEKVSAGYGDRI--ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEeeEEEeCCee--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 457777776533 488899999999999999999999999999999999887442 234444421 11100
Q ss_pred ------CCC-Cccc----------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHH--
Q 025371 167 ------GDI-PHSA----------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-- 222 (254)
Q Consensus 167 ------~~~-~~~~----------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~-- 222 (254)
... +... ++ ..+.+..+|+|++||+++++++..+|++||||||++++|......+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~ 472 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA 472 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 000 0000 00 01234557999999999999999999999999999999998733222
Q ss_pred --hCCceEEEEEchhhHHHHhCChhhh
Q 025371 223 --ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 223 --~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+-+.|||+++|+......++++++.
T Consensus 473 L~~~~gtvi~vSHd~~~~~~~~d~i~~ 499 (638)
T PRK10636 473 LIDFEGALVVVSHDRHLLRSTTDDLYL 499 (638)
T ss_pred HHHcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 2245999999998888877776654
No 249
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.86 E-value=2.2e-21 Score=168.37 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=96.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE------EcCCCccccC-------------CCCCc
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------VDTSNEIGGD-------------GDIPH 171 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------~~~~~ei~~~-------------~~~~~ 171 (254)
.++.+++.+.+|+.++|+||||||||||+++|+|+++|+.| .+.+ ..+...+... .....
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-KVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 46788888999999999999999999999999999988744 3322 1111111000 00000
Q ss_pred ccc-----------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEE
Q 025371 172 SAI-----------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLI 229 (254)
Q Consensus 172 ~~~-----------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi 229 (254)
... . .......+|+|++||+++++|+..+|++||+|||++++|+.. +.++.+.|.++|
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiI 197 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIF 197 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 000 0 012334579999999999999999999999999999999875 334445689999
Q ss_pred EEEchhhHHHHhCChhh
Q 025371 230 GTAHGEWLENIIKNPIL 246 (254)
Q Consensus 230 ~t~H~~~~~~~~~~~~~ 246 (254)
+++|+.+....+++.++
T Consensus 198 iisH~~~~i~~~~d~i~ 214 (264)
T PRK13546 198 FVSHNLGQVRQFCTKIA 214 (264)
T ss_pred EEcCCHHHHHHHcCEEE
Confidence 99999877666666554
No 250
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=165.71 Aligned_cols=146 Identities=17% Similarity=0.179 Sum_probs=100.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCCeE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRV----------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~~i----------------- 154 (254)
+.++++++.... .++++++.+++|++++|+||||||||||+++|+|++++ . .+.+
T Consensus 6 ~~~l~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~-~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV-EGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCce--eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCc-ceEEEECCEEcccchhhHHHh
Confidence 467888876432 48889999999999999999999999999999999863 2 2222
Q ss_pred ----EEEcCCCccccC------C------CC-Ccccc-----------c--------cccccCCCChhHHHHHHHHHHHc
Q 025371 155 ----VIVDTSNEIGGD------G------DI-PHSAI-----------G--------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 155 ----~~~~~~~ei~~~------~------~~-~~~~~-----------~--------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.++.+...+... . .. ..... + ..+....+|+|++||+++++|+.
T Consensus 83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 222221110000 0 00 00000 0 01122346999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++|++|||++++|..+ +.++. ++.++|+++|+.+....+.++++
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~sH~~~~~~~~~d~i~ 216 (250)
T PRK14262 163 VEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIGQAIRIADYIA 216 (250)
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999876 33333 37899999999876555555543
No 251
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.2e-21 Score=165.98 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=101.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI---------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~~---------------- 156 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|. ..+.|.+
T Consensus 7 i~~v~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 7 VKDLNIYYGSFH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred EeeEEEEECCEe--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHh
Confidence 568888886533 588899999999999999999999999999999998641 1222222
Q ss_pred -----EcCCCccccC--------------CCCCcccc-----------c--------cccccCCCChhHHHHHHHHHHHc
Q 025371 157 -----VDTSNEIGGD--------------GDIPHSAI-----------G--------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 157 -----~~~~~ei~~~--------------~~~~~~~~-----------~--------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+... ........ + ..+....+|+|++||+++++|+.
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 1111110000 00000000 0 00112347999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|... +.++. .+.++|+++|+.+....++++++
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i~ 218 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQTA 218 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999876 33333 46899999999877666555543
No 252
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=2.9e-21 Score=184.49 Aligned_cols=147 Identities=21% Similarity=0.257 Sum_probs=104.8
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe-----EEEEcCCCccccCC-----
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-----VVIVDTSNEIGGDG----- 167 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~-----i~~~~~~~ei~~~~----- 167 (254)
.++++++... .++.+++.+.+|++++|+||||||||||+++|+|+++|+.|.- +.++.+........
T Consensus 344 ~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~ 420 (590)
T PRK13409 344 PDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDL 420 (590)
T ss_pred cceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHH
Confidence 4566666442 2567788899999999999999999999999999998874431 23333332211100
Q ss_pred ------CCCcccc--------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHH
Q 025371 168 ------DIPHSAI--------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 222 (254)
Q Consensus 168 ------~~~~~~~--------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~ 222 (254)
....... + ..+....+|+|++||+++|++|..+|++||+|||++++|... +.++.
T Consensus 421 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~ 500 (590)
T PRK13409 421 LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500 (590)
T ss_pred HHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 0000000 0 013445679999999999999999999999999999999876 34444
Q ss_pred h-CCceEEEEEchhhHHHHhCChhhh
Q 025371 223 E-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 223 ~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+ .|.++|+++|+......++++++.
T Consensus 501 ~~~g~tviivsHD~~~~~~~aDrviv 526 (590)
T PRK13409 501 EEREATALVVDHDIYMIDYISDRLMV 526 (590)
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4 488999999998888877776543
No 253
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.8e-21 Score=168.70 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-----cCCCCeE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQKRV----------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-----~~~~~~i----------------- 154 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++ |+. +.|
T Consensus 42 i~~l~~~~~~~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~-G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 42 ARDLNVFYGDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE-GELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEECCEe--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCc-eEEEECCEEccccccchHhh
Confidence 457888886533 5889999999999999999999999999999999986 232 222
Q ss_pred ----EEEcCCCccccCC------------CCCcc---c-------cc--------cccccCCCChhHHHHHHHHHHHccC
Q 025371 155 ----VIVDTSNEIGGDG------------DIPHS---A-------IG--------TARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 155 ----~~~~~~~ei~~~~------------~~~~~---~-------~~--------~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
.++.+...+.... ..+.. . ++ ..+....+|+|++||+++++++..+
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred hccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 2222211110000 00000 0 00 0122345799999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|++||+|||++++|... +.++.+ +.++|+++|+.+....+.+++
T Consensus 199 p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 199 PEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEE
Confidence 99999999999999876 333333 479999999988777666654
No 254
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=99.86 E-value=4e-20 Score=175.77 Aligned_cols=207 Identities=16% Similarity=0.242 Sum_probs=146.4
Q ss_pred CCCeEEEEEec---CCCcEEEEeccCCceeccccCCCHHH-HHHHHHHhccc-------CCCce--eEEc-Cc--eeEEe
Q 025371 25 RGQLLEVILDL---GRLPEARYLGEFGGKYLRSTEVSVEE-LEYAQSAVGEF-------GGDNR--AGIE-GT--LHRIS 88 (254)
Q Consensus 25 ~~~v~ei~i~~---g~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~~-------~~~~~--~~~~-~~--~~Rv~ 88 (254)
..+.+|||+.+ +.++.+|++|.+. .....+.+..+ +...+..++.. ..+.+ ..+. +. .+|++
T Consensus 194 ~~~ASDIhi~~~~~~~~v~~RidG~l~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~r~pQ~g~~~~~~~~~~~~~~Rvs 271 (564)
T TIGR02538 194 RKGASDIHFEPYEKSYRVRFRIDGILH--EVAQPPLALANRIAARIKVMSRLDIAEKRIPQDGRIKLKLSKSKAIDFRVS 271 (564)
T ss_pred HcCCceEEEEecCCeEEEEEEECCEEE--EccCCCHHHHHHHHHHHHHHcCCChhccccCccceEEEEecCCceEEEEEE
Confidence 47899999997 6788888888863 44333333222 22222333322 12333 3342 22 28999
Q ss_pred EEecCCCcEEEEEEEECceee--------cc----hhhhhcccc-CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE
Q 025371 89 AIRSRKGAIVGLTCRVGRAVS--------GH----IDMVYDLLH-YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (254)
Q Consensus 89 ~~~~~~g~~~~l~ir~~~~~~--------~~----~~~l~~~i~-~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~ 155 (254)
.++...|. ++++|...... +. ...+...+. +...++++||+||||||+++++...++.. ..+++
T Consensus 272 ~~p~~~G~--~~vlRll~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~ 348 (564)
T TIGR02538 272 TLPTLFGE--KVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNIS 348 (564)
T ss_pred eccCCCCc--eeEEEeecCccccCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEE
Confidence 99888886 89999854332 11 112333333 45689999999999999999999988654 67899
Q ss_pred EEcCCCccccCCCCCccccccccccCC-CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEch
Q 025371 156 IVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG 234 (254)
Q Consensus 156 ~~~~~~ei~~~~~~~~~~~~~~~~~~~-~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~ 234 (254)
++|++.|+... ... +..+ ...|..+..++..+|+++||+|+++|+++.+.+..+.+++.+||.|++|.|+
T Consensus 349 tiEdpvE~~~~----~~~-----q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa 419 (564)
T TIGR02538 349 TAEDPVEINLP----GIN-----QVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHT 419 (564)
T ss_pred EecCCceecCC----Cce-----EEEeccccCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEecc
Confidence 99999987532 211 1222 1335678889999999999999999999998888889999999999999999
Q ss_pred hhHHHHhCChh
Q 025371 235 EWLENIIKNPI 245 (254)
Q Consensus 235 ~~~~~~~~~~~ 245 (254)
+++..++.|..
T Consensus 420 ~~a~~~i~Rl~ 430 (564)
T TIGR02538 420 NDAPETLARLV 430 (564)
T ss_pred CCHHHHHHHHH
Confidence 99999887754
No 255
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6e-21 Score=164.25 Aligned_cols=148 Identities=12% Similarity=0.165 Sum_probs=100.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhc---cCcC-CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV---LSDE-FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~---~~~~-~~~~i------------------ 154 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+ .++. ..+.+
T Consensus 6 ~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 6 ARDVNFWYGDFH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEEECCEe--EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 457888876533 57889999999999999999999999999999997 3431 12222
Q ss_pred ---EEEcCCCccccC------C---C---CCccc------------ccc--------ccccCCCChhHHHHHHHHHHHcc
Q 025371 155 ---VIVDTSNEIGGD------G---D---IPHSA------------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 ---~~~~~~~ei~~~------~---~---~~~~~------------~~~--------~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+... . . ..... ++. .+....+|+|++||+++++++..
T Consensus 84 ~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 84 KNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred hheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 222221111000 0 0 00000 000 01223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+++|+|||++++|... +.++ ..|.++|+++|+.+....++++++.
T Consensus 164 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 164 SPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEE
Confidence 999999999999999876 3333 3478999999998876665555543
No 256
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.8e-21 Score=164.56 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=101.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC---cCCCC------------------eEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQK------------------RVV 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~---~~~~~------------------~i~ 155 (254)
+.+++++|+.. ..++++++.+.+|++++|+||||||||||+++|+|+++ |..|. .+.
T Consensus 5 ~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 5 TTNLNLFYGKK--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeEEEECCE--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 45788888653 25889999999999999999999999999999999974 33221 122
Q ss_pred EEcCCCccccC---------CCC-----Cccc----c-------cc--------ccccCCCChhHHHHHHHHHHHccCCC
Q 025371 156 IVDTSNEIGGD---------GDI-----PHSA----I-------GT--------ARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 156 ~~~~~~ei~~~---------~~~-----~~~~----~-------~~--------~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
++.+...+... ... +... . +. .+....+|+|++||+++++++..+|+
T Consensus 83 ~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 83 MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 33222111000 000 0000 0 00 01223469999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|||++++|... +.++. .|.++|+++|+.+....+.++++
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~ 212 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTA 212 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEE
Confidence 999999999999876 23332 48899999999886666555544
No 257
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.4e-21 Score=165.29 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--cC--CCCe-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKR------------------- 153 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~~--~~~~------------------- 153 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|+++ |+ ..+.
T Consensus 7 ~~nl~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 7 LEQLNVHFGKNH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEeCCee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 468888886432 5889999999999999999999999999999999985 31 1122
Q ss_pred --EEEEcCCCccccC---------C----C-CCcc----cc-------cc--------ccccCCCChhHHHHHHHHHHHc
Q 025371 154 --VVIVDTSNEIGGD---------G----D-IPHS----AI-------GT--------ARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 154 --i~~~~~~~ei~~~---------~----~-~~~~----~~-------~~--------~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.++.+...+... . . .... .. +. ......+|+|++||+++++++.
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 2222222111000 0 0 0000 00 00 0113347999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|..+ +.++. .+.++|+++|+.+....++++++
T Consensus 165 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T PRK14256 165 VKPEVILMDEPASALDPISTLKIEELIEELK-EKYTIIIVTHNMQQAARVSDYTA 218 (252)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCcEEEEECCHHHHHhhCCEEE
Confidence 9999999999999999876 33443 36899999999877766656554
No 258
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.4e-21 Score=185.52 Aligned_cols=150 Identities=18% Similarity=0.226 Sum_probs=105.0
Q ss_pred EEEEEEEECce---------eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------
Q 025371 97 IVGLTCRVGRA---------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------ 155 (254)
Q Consensus 97 ~~~l~ir~~~~---------~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------ 155 (254)
+.+++++|... ....++++++.+.+|++++|+|+||||||||+++|+|+++|+. +.|.
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~-G~I~~~g~~i~~~~~~ 394 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG-GEIIFNGQRIDTLSPG 394 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC-cEEEECCEECCcCCHH
Confidence 45777777410 1135788999999999999999999999999999999998763 2222
Q ss_pred ----------EEcCCCc--cccC-------------CCC-Cccc-----------ccc-----ccccCCCChhHHHHHHH
Q 025371 156 ----------IVDTSNE--IGGD-------------GDI-PHSA-----------IGT-----ARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 156 ----------~~~~~~e--i~~~-------------~~~-~~~~-----------~~~-----~~~~~~~s~g~~~~~~l 193 (254)
++.+... +... ... .... ++. .+....+|+||+||++|
T Consensus 395 ~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~i 474 (623)
T PRK10261 395 KLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICI 474 (623)
T ss_pred HHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 2222210 0000 000 0000 000 12233569999999999
Q ss_pred HHHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 194 EAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 194 ~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+||..+|++||+|||++++|... +.++.++ |.++|+++|+.+....++++++.
T Consensus 475 AraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~v 536 (623)
T PRK10261 475 ARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 536 (623)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999876 4444444 89999999998888777776644
No 259
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.7e-21 Score=164.50 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=101.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCCeE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRV----------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~~i----------------- 154 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|+.+| . .+.|
T Consensus 7 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 7 SKNLNLWYGEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI-EGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEeEEEECCee--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCC-ccEEEECCEecccccccHHHH
Confidence 457888876532 58899999999999999999999999999999999764 2 2222
Q ss_pred ----EEEcCCCccccC------C---CCC---cc-c-----------cc--------cccccCCCChhHHHHHHHHHHHc
Q 025371 155 ----VIVDTSNEIGGD------G---DIP---HS-A-----------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 155 ----~~~~~~~ei~~~------~---~~~---~~-~-----------~~--------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.++.+...+... . ... .. . .+ ..+....+|+|++||+++++++.
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred HhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 222221111000 0 000 00 0 00 01223457999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|+++|+|||++++|..+ +.++.+ +.++|+++|+.+....++++++
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~ 217 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTA 217 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEE
Confidence 9999999999999999876 333333 6899999999877666555544
No 260
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.85 E-value=2.9e-21 Score=182.97 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=105.1
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCC-----------------
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQK----------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~----------------- 152 (254)
+.+++++|+.. ....++++++.+.+|++++|+||||||||||+++|+|+++| +.|.
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 87 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence 45778877531 12358899999999999999999999999999999999985 2221
Q ss_pred -----eEEEEcCCCc--cccC--------------CCCCccc-----------ccc-------ccccCCCChhHHHHHHH
Q 025371 153 -----RVVIVDTSNE--IGGD--------------GDIPHSA-----------IGT-------ARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 153 -----~i~~~~~~~e--i~~~--------------~~~~~~~-----------~~~-------~~~~~~~s~g~~~~~~l 193 (254)
++.++.+... +... ...+... ++. .+....+|+||+||+++
T Consensus 88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~i 167 (529)
T PRK15134 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMI 167 (529)
T ss_pred HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHH
Confidence 1223332211 0000 0000000 000 12344679999999999
Q ss_pred HHHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 194 EAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 194 ~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+||..+|++||+|||++++|+.. +.++..+ |.++|+++|+.+....++++++.
T Consensus 168 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~ 229 (529)
T PRK15134 168 AMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAV 229 (529)
T ss_pred HHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence 999999999999999999999876 3344444 89999999998877766666543
No 261
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.85 E-value=2.3e-21 Score=189.49 Aligned_cols=147 Identities=19% Similarity=0.201 Sum_probs=106.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+|+||||||||+++|+|+++|+.|. ++.+++
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 559 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe
Confidence 56889998754334689999999999999999999999999999999999987432 223333
Q ss_pred CCCccccC----------CCCCcccc------------------cc----ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD----------GDIPHSAI------------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~------------------~~----~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+... .......+ +. ...-..+||||+||.++|||+..+|+++|+
T Consensus 560 Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred cCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 33222110 00000000 00 011224699999999999999999999999
Q ss_pred eCCCchHHHHH----HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHA----CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~----~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|... ...+.+.+.|+|+++|..+....+++
T Consensus 640 DEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~ 680 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDE 680 (710)
T ss_pred ECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 99999999877 23334568899999999888777554
No 262
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.85 E-value=5.4e-21 Score=181.92 Aligned_cols=148 Identities=15% Similarity=0.190 Sum_probs=107.0
Q ss_pred EEEEEEEEC-ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCccccC--
Q 025371 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~-~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~ei~~~-- 166 (254)
+.+++++|. ... .++++++.+.+|++++|+|||||||||||++|+|+++|+.|. ++.++.+...+...
T Consensus 7 ~~nls~~~~~~~~--il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~t 84 (552)
T TIGR03719 7 MNRVSKVVPPKKE--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKT 84 (552)
T ss_pred EeeEEEecCCCCe--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCc
Confidence 568888886 432 588999999999999999999999999999999999886442 23344443221100
Q ss_pred ------CCC-------------------Cccc---------------------------------cc---cccccCCCCh
Q 025371 167 ------GDI-------------------PHSA---------------------------------IG---TARRMQVPEP 185 (254)
Q Consensus 167 ------~~~-------------------~~~~---------------------------------~~---~~~~~~~~s~ 185 (254)
... +... ++ .......+|+
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 000 0000 00 0123445799
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHH---HH-HhCCceEEEEEchhhHHHHhCChhh
Q 025371 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 186 g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~---~~-~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++||+++++++..+|++||+|||++++|..... ++ .+.+.++|+++|+.+....++++++
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEE
Confidence 9999999999999999999999999999998733 22 2345699999999888877766554
No 263
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.3e-21 Score=161.38 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=99.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-----------CCcccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-----------SNEIGG 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-----------~~ei~~ 165 (254)
+.++++++..+.. +++++..|++|+..+|+|||||||||||+.+++..+|. ...+..+.. +..|++
T Consensus 34 l~~v~v~r~gk~i--L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 34 LKNVSVRRNGKKI--LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred ecceEEEECCEee--ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCc
Confidence 4588998877765 89999999999999999999999999999999999986 333222211 001111
Q ss_pred CC-------------------------CCCcccc-------------------ccccccCCCChhHHHHHHHHHHHccCC
Q 025371 166 DG-------------------------DIPHSAI-------------------GTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 166 ~~-------------------------~~~~~~~-------------------~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
.. .+.+... ...+.+..+|-|+++++.++|||+.+|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 00 0000000 001445567999999999999999999
Q ss_pred CEEEEeCCCchHHHHHHH-------HHHhC--CceEEEEEch-hhHHHHhC
Q 025371 202 EVIIVDEIGTEAEAHACR-------SIAER--GVMLIGTAHG-EWLENIIK 242 (254)
Q Consensus 202 ~viilDEp~~~ld~~~~~-------~~~~~--G~~vi~t~H~-~~~~~~~~ 242 (254)
.++|||||++++|..+.. ++... +.++++++|. .++..-+.
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccc
Confidence 999999999999987732 33333 5677777775 44444343
No 264
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=2.3e-22 Score=163.50 Aligned_cols=143 Identities=19% Similarity=0.229 Sum_probs=102.7
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc-cc-------cCCCC
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IG-------GDGDI 169 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e-i~-------~~~~~ 169 (254)
.++..+|.+.. ..+.+++.+.+||++++.||||+||||.+.++.|+++|+.| +|..-+.... ++ ..+.+
T Consensus 8 ~~l~K~y~kr~--Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G-~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 8 ENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG-KILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred hhhhHhhCCee--eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCc-eEEECCcccccCChHHHhhcCcccc
Confidence 35666665544 37889999999999999999999999999999999999844 4443222100 00 01223
Q ss_pred Ccccc-cc-----------------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 170 PHSAI-GT-----------------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 170 ~~~~~-~~-----------------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
||+.. +. ...-..+|||+++|+.+||||+.+|+++++|
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 33210 00 0122245999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEch-hhHHHHhCC
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHG-EWLENIIKN 243 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~-~~~~~~~~~ 243 (254)
||+++.|+.+ +..+++.|.+|++|-|. .+..+.++|
T Consensus 165 EPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dR 208 (243)
T COG1137 165 EPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDR 208 (243)
T ss_pred CCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhhe
Confidence 9999999876 55667889999999998 444444443
No 265
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.6e-21 Score=163.38 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=100.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--cC--CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE--FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~~--~~~~i------------------ 154 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+.+ |+ ..+.|
T Consensus 8 ~~~l~~~~~~~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14239 8 VSDLSVYYNKKK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR 85 (252)
T ss_pred EEeeEEEECCee--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhh
Confidence 467888886532 5889999999999999999999999999999999853 41 12222
Q ss_pred ---EEEcCCCccccC------------CCCC-cccc-----------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 155 ---VIVDTSNEIGGD------------GDIP-HSAI-----------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 ---~~~~~~~ei~~~------------~~~~-~~~~-----------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+... .... .... + ..+....+|+|++||+++++|+..
T Consensus 86 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14239 86 KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT 165 (252)
T ss_pred hcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 222222111000 0000 0000 0 011233479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|... +.++. .+.++|+++|+.+....+.++++
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~ 218 (252)
T PRK14239 166 SPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQQASRISDRTG 218 (252)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEECCHHHHHHhCCEEE
Confidence 999999999999999876 33332 36899999999876655555543
No 266
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.9e-21 Score=164.15 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-----CCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-----~~~------------------- 152 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|++++. .|.
T Consensus 6 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 6 IENLDLFYGENQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred EeccEEEECCee--eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence 457788876533 588999999999999999999999999999999998752 221
Q ss_pred eEEEEcCCCccccC--------C----CCCccc-c-----------cc--------ccccCCCChhHHHHHHHHHHHccC
Q 025371 153 RVVIVDTSNEIGGD--------G----DIPHSA-I-----------GT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 153 ~i~~~~~~~ei~~~--------~----~~~~~~-~-----------~~--------~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
.+.++.+...+... . ...... . +. ......+|+|++||+++++++..+
T Consensus 84 ~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (249)
T PRK14253 84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME 163 (249)
T ss_pred heeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence 12222221110000 0 000000 0 00 012234799999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+++|+|||++++|... +.++.+ +.++|+++|+.+....++++++
T Consensus 164 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~ 215 (249)
T PRK14253 164 PDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTA 215 (249)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEE
Confidence 99999999999999876 333333 6899999999887776666554
No 267
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=5e-21 Score=165.32 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=101.9
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE----------EEcCCC-------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------- 161 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~----------~~~~~~------- 161 (254)
+++++|+... ..++.++ .+.+|++++|+||||||||||+++|+|+++|+.| .|. .++...
T Consensus 5 ~~~~~y~~~~-~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G-~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGPNS-FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG-KFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecCcc-hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEeeccccchhhhhccCchhhhhhHH
Confidence 6777876432 2467777 4899999999999999999999999999998744 442 111100
Q ss_pred ------ccccC----CCCCc---ccc--------------------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 162 ------EIGGD----GDIPH---SAI--------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 162 ------ei~~~----~~~~~---~~~--------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+.+. ...+. .++ + ..+....+|+|++|++++++++..+|+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 00000 00010 000 0 01222346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|||++++|... +.++.+.|.++|+++|+.+....+++.++
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~ 210 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIH 210 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 9999999999875 44444568999999999888777666654
No 268
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.85 E-value=6.7e-21 Score=183.95 Aligned_cols=148 Identities=15% Similarity=0.169 Sum_probs=105.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------EcCCCccccCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------VDTSNEIGGDGD 168 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~--------~~~~~ei~~~~~ 168 (254)
+.+++++++... .++++++.+.+|+.++|+|||||||||||++|+|+++|+.| .|.+ +++.........
T Consensus 6 i~~ls~~~~~~~--il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G-~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 6 IHGAWLSFSDAP--LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDG-RIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EeeEEEEeCCce--eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEeCCCCEEEEeccCCCCCCCCC
Confidence 457888886543 58899999999999999999999999999999999988743 3322 111100000000
Q ss_pred CCc-----------------------------------------------cc-------------cccccccCCCChhHH
Q 025371 169 IPH-----------------------------------------------SA-------------IGTARRMQVPEPSLQ 188 (254)
Q Consensus 169 ~~~-----------------------------------------------~~-------------~~~~~~~~~~s~g~~ 188 (254)
+.+ .. +...+.+..+|+|++
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 000 00 000123455799999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCchHHHHHHH---HH-HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 189 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 189 ~~~~l~~al~~~P~viilDEp~~~ld~~~~~---~~-~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||++|+++|..+|++||+|||++++|..... ++ .+.+.++|+++|+......+++.++.
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~ 225 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVD 225 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEE
Confidence 9999999999999999999999999998733 22 23356999999998888877776643
No 269
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7e-21 Score=163.90 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=101.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--c---CCCCeEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRVV---------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~---~~~~~i~---------------- 155 (254)
+.+++++++.. ..++++++.+.+|++++|+|+||||||||+++|+|+++ | . .+.|.
T Consensus 7 ~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~-~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI-TGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCc-ceEEEECCEEcccccchHHHh
Confidence 56888888653 35888999999999999999999999999999999986 2 2 22222
Q ss_pred -----EEcCCCccccC--------C----CCCccc------------ccc--------ccccCCCChhHHHHHHHHHHHc
Q 025371 156 -----IVDTSNEIGGD--------G----DIPHSA------------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 156 -----~~~~~~ei~~~--------~----~~~~~~------------~~~--------~~~~~~~s~g~~~~~~l~~al~ 198 (254)
++.+...+... . ...... ++. .+....+|+|++||+++++|+.
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 84 RKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred hccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 22221111000 0 000000 000 1122346999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|..+ +.++ ..+.++|+++|+.+....+.++++
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEE
Confidence 9999999999999999876 3333 237899999999877666555554
No 270
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.7e-21 Score=165.60 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=101.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-----cCCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-----~~~~~------------------- 152 (254)
+.++++++... ..++++++.+.+|++++|+|+||||||||+++|+|+++ ++.|.
T Consensus 27 ~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 27 TQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 45778777543 25788999999999999999999999999999999986 33221
Q ss_pred -eEEEEcCCCccccC------------CCC-Ccccc----c---------------cccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGD------------GDI-PHSAI----G---------------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~------------~~~-~~~~~----~---------------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+.++.+...+... ... ..... . .......+|+|++||+++++++..
T Consensus 105 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~ 184 (271)
T PRK14238 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI 184 (271)
T ss_pred hhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 12222222111000 000 00000 0 001223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|..+ +.++. .+.++|+++|+.+....++++++
T Consensus 185 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~i~~~~d~i~ 237 (271)
T PRK14238 185 EPDVILMDEPTSALDPISTLKVEELVQELK-KDYSIIIVTHNMQQAARISDKTA 237 (271)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-cCCEEEEEEcCHHHHHHhCCEEE
Confidence 999999999999999876 33333 37899999999887666666543
No 271
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4e-21 Score=185.06 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=104.7
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc--------------C-
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------T- 159 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~--------------~- 159 (254)
+.+++++|... ....++++++.+.+|++++|+|+||||||||+++|+|+++|+.| .|.+-. .
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G-~i~~~g~~~~~~~~~~~~~~~~ 93 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG-LVQCDKMLLRRRSRQVIELSEQ 93 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe-EEEECCEEeccccccccccccC
Confidence 45777777531 12358899999999999999999999999999999999987633 222100 0
Q ss_pred ---------CCccccCCC------CCccc------------------------------ccc-------ccccCCCChhH
Q 025371 160 ---------SNEIGGDGD------IPHSA------------------------------IGT-------ARRMQVPEPSL 187 (254)
Q Consensus 160 ---------~~ei~~~~~------~~~~~------------------------------~~~-------~~~~~~~s~g~ 187 (254)
...+++..+ .+... ++. .+....+|+||
T Consensus 94 ~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq 173 (623)
T PRK10261 94 SAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGM 173 (623)
T ss_pred CHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHH
Confidence 001111100 00000 000 12233469999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 188 QHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 188 ~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+||++||+||..+|++||+|||++++|... +.++.+. |.++|+++|+.+....++++++.
T Consensus 174 ~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 174 RQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999876 3444444 89999999998877776666544
No 272
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.8e-21 Score=164.41 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=100.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc--C--CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~--~--~~~~i------------------ 154 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|++++ + ..+.+
T Consensus 15 i~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 15 INGMNLWYGQHH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred EeeEEEEECCee--eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 568888886532 58899999999999999999999999999999999862 1 12222
Q ss_pred ---EEEcCCCccccC---------CCC----Cccc----c-------cc--------ccccCCCChhHHHHHHHHHHHcc
Q 025371 155 ---VIVDTSNEIGGD---------GDI----PHSA----I-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 ---~~~~~~~ei~~~---------~~~----~~~~----~-------~~--------~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+... ... .... . +. ......+|+|++||+++++++..
T Consensus 93 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~ 172 (259)
T PRK14274 93 KNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT 172 (259)
T ss_pred hceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 222221111000 000 0000 0 00 01223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++++|||++++|... +.++. .+.++|+++|+.+....+.++++
T Consensus 173 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~ 225 (259)
T PRK14274 173 NPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQQAARVSDQTA 225 (259)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhCCEEE
Confidence 999999999999999876 33333 37899999999876665555543
No 273
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=7e-21 Score=161.30 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=91.8
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------eEEEEcCCCccccC-----------C------
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGD-----------G------ 167 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------~i~~~~~~~ei~~~-----------~------ 167 (254)
.+++|++++|+|+||||||||+++|+|+++++.|. ++.++.+...+... .
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 37889999999999999999999999999876431 13333332211000 0
Q ss_pred CC--Cc-cc---c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh
Q 025371 168 DI--PH-SA---I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE 223 (254)
Q Consensus 168 ~~--~~-~~---~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~ 223 (254)
.. +. .. . + .......+|+|++||+++++++..+|+++|+|||++++|..+ +.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 161 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG 161 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00 00 00 0 0 001233469999999999999999999999999999999876 444455
Q ss_pred CCceEEEEEchhhHHHHhCChhhh
Q 025371 224 RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 224 ~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.|.++|+++|+.+....++++++.
T Consensus 162 ~~~tvii~sH~~~~~~~~~d~i~~ 185 (223)
T TIGR03771 162 AGTAILMTTHDLAQAMATCDRVVL 185 (223)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 689999999998877666666553
No 274
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.8e-21 Score=165.64 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~------------------- 152 (254)
+.+++++++... .++++++.+++|++++|+||||||||||+++|+|++++ ..|.
T Consensus 28 ~~nl~~~~~~~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~ 105 (272)
T PRK14236 28 VRNLNLFYGDKQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105 (272)
T ss_pred EEEEEEEECCee--EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHh
Confidence 457888876532 58889999999999999999999999999999999863 2221
Q ss_pred -eEEEEcCCCccccC--------C-CCC---ccc-----c-------cc--------ccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGD--------G-DIP---HSA-----I-------GT--------ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~--------~-~~~---~~~-----~-------~~--------~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+.++.+...+... . ... ... . +. .+....+|+|++||+++++++..
T Consensus 106 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 185 (272)
T PRK14236 106 RRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI 185 (272)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC
Confidence 12222221111000 0 000 000 0 00 01234479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|++||+|||++++|... +.++.+ +.++|+++|+.+....++++++.
T Consensus 186 ~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~ 239 (272)
T PRK14236 186 EPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAF 239 (272)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEE
Confidence 999999999999999876 334433 78999999998776665555543
No 275
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.3e-20 Score=163.22 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI---------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~~---------------- 156 (254)
+.++++++.... .++++++.+++|++++|+|+||||||||+++|+|+++++ ..+.+.+
T Consensus 10 ~~nl~~~~~~~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~ 87 (261)
T PRK14258 10 VNNLSFYYDTQK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLR 87 (261)
T ss_pred EeeEEEEeCCee--EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhh
Confidence 467888876532 578899999999999999999999999999999999873 1222221
Q ss_pred -----EcCCCccccC------C------CC-Cccc----c-------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 157 -----VDTSNEIGGD------G------DI-PHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 157 -----~~~~~ei~~~------~------~~-~~~~----~-------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
+.+...+... . .. +... . + ..+....+|+|++||+++++++..
T Consensus 88 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 88 RQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1111000000 0 00 0000 0 0 001223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+++|+|||++++|... +.++.. .|.++|+++|+.+....++++++.
T Consensus 168 ~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~ 223 (261)
T PRK14258 168 KPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF 223 (261)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE
Confidence 999999999999999876 333333 488999999998877777666543
No 276
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.3e-21 Score=166.99 Aligned_cols=147 Identities=13% Similarity=0.141 Sum_probs=101.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--c---CCCCeEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRVV---------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~---~~~~~i~---------------- 155 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+.. | + .+.|.
T Consensus 42 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~-~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 42 AKNFSIYYGEFE--AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT-TGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EeeeEEEECCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC-ceEEEECCEEhhhcccchHHh
Confidence 457888876532 5788999999999999999999999999999999853 2 3 22222
Q ss_pred -----EEcCCCcccc---------CC---CCCc-cc-----------cc--------cccccCCCChhHHHHHHHHHHHc
Q 025371 156 -----IVDTSNEIGG---------DG---DIPH-SA-----------IG--------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 156 -----~~~~~~ei~~---------~~---~~~~-~~-----------~~--------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
++.+...+.. .. .... .. ++ ..+....+|+|++||+++++++.
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 2222111100 00 0000 00 00 01123447999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.+|++||+|||++++|... +.++. .+.++|+++|+.+....+.++++.
T Consensus 199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tvIivsH~~~~~~~~~d~i~~ 253 (286)
T PRK14275 199 VEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQQASRVSDYTMF 253 (286)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999876 22332 367999999998877666665543
No 277
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.6e-21 Score=168.32 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=101.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-----cCCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-----DEFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-----~~~~~------------------- 152 (254)
+.++++++.... .++.+++.+.+|++++|+|+||||||||+++|+|+++ +..|.
T Consensus 48 i~nl~~~~~~~~--iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~ 125 (305)
T PRK14264 48 VEDLDVYYGDDH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELR 125 (305)
T ss_pred EEEEEEEeCCee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 457888776532 5888999999999999999999999999999999985 23221
Q ss_pred -eEEEEcCCCccc---------cCCC---------------CCccc-----c-------c--------cccccCCCChhH
Q 025371 153 -RVVIVDTSNEIG---------GDGD---------------IPHSA-----I-------G--------TARRMQVPEPSL 187 (254)
Q Consensus 153 -~i~~~~~~~ei~---------~~~~---------------~~~~~-----~-------~--------~~~~~~~~s~g~ 187 (254)
++.++.+...+. +... ..... . . .......+|+|+
T Consensus 126 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 205 (305)
T PRK14264 126 KRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQ 205 (305)
T ss_pred hceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHH
Confidence 122322221110 0000 00000 0 0 001233479999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 188 QHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 188 ~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+||+++++||..+|++||+|||++++|... +.++.+ +.++|+++|+.+....+++++
T Consensus 206 ~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 206 QQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEE
Confidence 999999999999999999999999999876 333333 579999999988776666654
No 278
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=8.6e-22 Score=159.84 Aligned_cols=147 Identities=20% Similarity=0.284 Sum_probs=110.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-------Ccc------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------NEI------ 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-------~ei------ 163 (254)
+.+++.+++.+.. ++.++..+++|++..++||||+||||||..++++++.+.|. ++++.. .++
T Consensus 4 i~nv~K~y~~~~v--l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~--i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 4 IENVSKSYGTKVV--LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE--ITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred ehhhhHhhCCEEe--eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce--EEEeeeecccCChHHHHHHHHH
Confidence 4577788877765 88999999999999999999999999999999999987443 333321 000
Q ss_pred ----------------ccCCCCCccccc---------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 164 ----------------GGDGDIPHSAIG---------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 164 ----------------~~~~~~~~~~~~---------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
...+.+|+..-. ..+-+..+||||+||+.+|..++++.|++++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 001122221100 0123344699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||-+++|... +++++ +-|+|++++.|+.+++..+.+.++.
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVA 208 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVA 208 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheee
Confidence 99999999875 44444 3499999999999999999888764
No 279
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.85 E-value=4.5e-21 Score=186.79 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=104.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+|+||||||||++.|+|+++|+.|. .+.++.
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 56889998643334689999999999999999999999999999999999987432 122333
Q ss_pred CCCccccC---------CCCCcccccc------------------c----cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---------GDIPHSAIGT------------------A----RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~------------------~----~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
|...+... .......+.. . ..-..+|+||+||.++|||+..+|+++|+|
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 32222110 0000000000 0 111246999999999999999999999999
Q ss_pred CCCchHHHHHHH----HHHhCCceEEEEEchhhHHHHhCC
Q 025371 208 EIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 208 Ep~~~ld~~~~~----~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
||++++|...-. .+.+.+.|+|+++|..+....+++
T Consensus 614 EpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~ 653 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADR 653 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCE
Confidence 999999988722 233447899999999887776544
No 280
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.5e-21 Score=165.30 Aligned_cols=147 Identities=13% Similarity=0.160 Sum_probs=101.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~------------------- 152 (254)
+.++++++... ..++++++.+.+|++++|+||||||||||+++|+|++++ +.|.
T Consensus 23 ~~nl~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 23 TKDLHVYYGKK--EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred EeeEEEEECCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 45788887543 358899999999999999999999999999999999863 3221
Q ss_pred -eEEEEcCCCccccC--------C--C--C-Ccccc-----------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGD--------G--D--I-PHSAI-----------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~--------~--~--~-~~~~~-----------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+.++.+...+... . . . ..... + ..+....+|+|++||+++++++..
T Consensus 101 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~ 180 (267)
T PRK14237 101 KHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV 180 (267)
T ss_pred cceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 12222222111000 0 0 0 00000 0 001223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++|+|||++++|... +.++ ..+.++|+++|+.+....++++++
T Consensus 181 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~ 233 (267)
T PRK14237 181 KPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTA 233 (267)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEE
Confidence 999999999999999876 3333 347899999999877665555543
No 281
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.85 E-value=1.2e-20 Score=182.24 Aligned_cols=149 Identities=10% Similarity=0.176 Sum_probs=106.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCc-cccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~e-i~~~-- 166 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+... +...
T Consensus 322 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 322 MENVNYQIDGKQ--LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKT 399 (635)
T ss_pred EeeeEEEECCeE--EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCC
Confidence 457888876543 478899999999999999999999999999999999886432 2334444211 1100
Q ss_pred ------CCCC----c--c-c-------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHH--
Q 025371 167 ------GDIP----H--S-A-------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-- 219 (254)
Q Consensus 167 ------~~~~----~--~-~-------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~-- 219 (254)
...+ . . . ++ ..+.+..+|+|++||+++++++..+|++||+|||++++|.....
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 0000 0 0 0 00 01234457999999999999999999999999999999998733
Q ss_pred -HHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 220 -SIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 220 -~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++... +.++|+++|+......+++.++.
T Consensus 480 ~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~ 509 (635)
T PRK11147 480 EELLDSYQGTVLLVSHDRQFVDNTVTECWI 509 (635)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhcCEEEE
Confidence 33332 55999999998888877776654
No 282
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.9e-20 Score=161.31 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=101.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--cC---CCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--DE---FQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~~---~~~------------------- 152 (254)
+.+++++++... .++++++.+.+|++++|+|+||||||||+++|+|+.+ +. .|.
T Consensus 8 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 8 SSDVHLFYGKFE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EEeEEEEECCee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 468888887533 5889999999999999999999999999999999864 21 121
Q ss_pred -eEEEEcCCCccccC------------CCCCccc------------cc--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGD------------GDIPHSA------------IG--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~------------~~~~~~~------------~~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+.++.+...+... ....... .+ .......+|+||+||+++++++..
T Consensus 86 ~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~ 165 (252)
T PRK14255 86 KQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV 165 (252)
T ss_pred CeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 12233222111000 0000000 00 012234579999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++|+|||++++|..+ +.++.+ +.++|+++|+.+....+.++++
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 166 KPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999876 333333 5799999999887766666553
No 283
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.85 E-value=7.9e-21 Score=181.79 Aligned_cols=147 Identities=15% Similarity=0.157 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......+++++..+++|+.++|+|+||||||||+++|+|+++|+.|. .+.+++
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 56888888654334689999999999999999999999999999999999987432 122333
Q ss_pred CCCccccC-----CCC--Cc----ccc-------c-----------cc----cccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 159 TSNEIGGD-----GDI--PH----SAI-------G-----------TA----RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 159 ~~~ei~~~-----~~~--~~----~~~-------~-----------~~----~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
|...+... -.+ +. ..+ + .. ..-..+||||+||.++|||+..+|+++|
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred cCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 32211110 000 00 000 0 00 1112369999999999999999999999
Q ss_pred EeCCCchHHHHHHHH----HH--hCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHACRS----IA--ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~~~~----~~--~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++++|..+... +. ..+.|+|+++|..+....+++
T Consensus 504 lDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 999999999876222 11 247899999999987776554
No 284
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.85 E-value=7e-21 Score=180.26 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=97.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------eEEEEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----------------~i~~~~~ 159 (254)
..+++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.|. .+.+++|
T Consensus 337 ~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q 415 (529)
T TIGR02868 337 LRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQ 415 (529)
T ss_pred EEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEcc
Confidence 468888886533 3689999999999999999999999999999999999987442 2233444
Q ss_pred CCccccC----------CCCCccccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 160 SNEIGGD----------GDIPHSAIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 160 ~~ei~~~----------~~~~~~~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
...+... .......+. .. .+-..+||||+||.++|||+..+|+++|+|
T Consensus 416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD 495 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 495 (529)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3222111 000000000 00 111236999999999999999999999999
Q ss_pred CCCchHHHHHHHH----HH--hCCceEEEEEch
Q 025371 208 EIGTEAEAHACRS----IA--ERGVMLIGTAHG 234 (254)
Q Consensus 208 Ep~~~ld~~~~~~----~~--~~G~~vi~t~H~ 234 (254)
||++++|...... +. ..++|+|+++|.
T Consensus 496 E~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 496 EPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9999999887222 22 247899999996
No 285
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=163.34 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=103.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-----Ce------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KR------------------ 153 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-----~~------------------ 153 (254)
+.+++++++... .++++++.+.+|++++|+|+||||||||+++|+|+++|+.| +.
T Consensus 13 ~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 13 ISRLYLYINDKA--ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred eeeEEEecCCce--eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 467888887644 48899999999999999999999999999999999987643 11
Q ss_pred -EEEEcCCCccccC--------------CCCCccc-----------ccc--------ccccCCCChhHHHHHHHHHHHcc
Q 025371 154 -VVIVDTSNEIGGD--------------GDIPHSA-----------IGT--------ARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 154 -i~~~~~~~ei~~~--------------~~~~~~~-----------~~~--------~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
+.++.+...+... ...+... ++. ......+|+|++||.++++++..
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 170 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALAL 170 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 1222221111000 0000000 000 01223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++++|||++++|..+ +.++. .+.++|+++|+.+....++++++
T Consensus 171 ~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~~~~~~~d~v~ 223 (257)
T PRK14246 171 KPKVLLMDEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQQVARVADYVA 223 (257)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999876 33333 46899999999887766666554
No 286
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=163.40 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=100.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI---------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~~---------------- 156 (254)
+..++++++... .++++++.+++|++++|+|+||||||||+++|+|+++|. ..++|.+
T Consensus 11 ~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 11 CKLDKIFYGNFM--AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEeEEEEeCCEE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 345666776543 478899999999999999999999999999999998751 1222222
Q ss_pred -----EcCCCccccC--------C-C---CCcc---ccc-cc--------------cccCCCChhHHHHHHHHHHHccCC
Q 025371 157 -----VDTSNEIGGD--------G-D---IPHS---AIG-TA--------------RRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 157 -----~~~~~ei~~~--------~-~---~~~~---~~~-~~--------------~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
+.+...+... . . .... ... .. .....+|+|++||+++++|+..+|
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2111111000 0 0 0000 000 00 112347999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++||+|||++++|+.. +.++ ..+.++|+++|+.+....++++++
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999876 3333 347899999999886666555553
No 287
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.84 E-value=1.4e-20 Score=179.06 Aligned_cols=149 Identities=19% Similarity=0.269 Sum_probs=106.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCc-cccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~e-i~~~-- 166 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+... +...
T Consensus 325 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 325 AENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 402 (552)
T ss_pred EeeEEEEECCee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCc
Confidence 457777775532 588899999999999999999999999999999999886432 2344444321 1100
Q ss_pred -------CC----CCccc---------ccc-----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH
Q 025371 167 -------GD----IPHSA---------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI 221 (254)
Q Consensus 167 -------~~----~~~~~---------~~~-----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~ 221 (254)
.. ..... ++. .+....+|+|++||+++++++..+|++||+|||++++|......+
T Consensus 403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 482 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482 (552)
T ss_pred HHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 00 00000 000 123345799999999999999999999999999999999873332
Q ss_pred ---H-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 222 ---A-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 222 ---~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
. +.+.++|+++|+.+....++++++.
T Consensus 483 ~~~l~~~~~~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 483 EEALLEFAGCAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred HHHHHHCCCeEEEEeCCHHHHHHhCCEEEE
Confidence 2 2234899999998888877776654
No 288
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.7e-20 Score=162.77 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=101.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCCeEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQKRVV---------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~~i~---------------- 155 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|++.+ + .+.+.
T Consensus 13 i~~v~~~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 13 TENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV-EGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeeeEEEECCEE--EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCC-ceEEEECCEEccccccChHHH
Confidence 457888876542 48889999999999999999999999999999998752 2 22222
Q ss_pred -----EEcCCCccccC---------CC---CCcc--c-c-------c--------cccccCCCChhHHHHHHHHHHHccC
Q 025371 156 -----IVDTSNEIGGD---------GD---IPHS--A-I-------G--------TARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 156 -----~~~~~~ei~~~---------~~---~~~~--~-~-------~--------~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
++.+...+... .. .... . . + ..+....+|+|++||+++++|+..+
T Consensus 90 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 22221110000 00 0000 0 0 0 0012234799999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|++||+|||++++|... +.++.+ +.++|+++|+.+....++++++.
T Consensus 170 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~ 222 (264)
T PRK14243 170 PEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAF 222 (264)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999999999876 223333 57999999998777777666543
No 289
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=6.9e-21 Score=164.33 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=97.5
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC---------------ccc--c--CCCCCcc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---------------EIG--G--DGDIPHS 172 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~---------------ei~--~--~~~~~~~ 172 (254)
.++.++.++.|++++|.|-+|||||||+|++.+++.|+.|+ |. ++... .+. + ...+||.
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~-il-v~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE-IL-VDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCce-EE-ECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 56777789999999999999999999999999999998544 33 22110 011 0 1234444
Q ss_pred cccc---------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH--
Q 025371 173 AIGT---------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-- 217 (254)
Q Consensus 173 ~~~~---------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-- 217 (254)
++.. .+....+|||||||+.+||||..+|++|+||||++.+|+..
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 3211 02233469999999999999999999999999999999864
Q ss_pred -----HHHHHhC-CceEEEEEchhhHHHHhCChh
Q 025371 218 -----CRSIAER-GVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 218 -----~~~~~~~-G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+.++..+ .+|++++||+.+.+-.+.+++
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI 235 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRI 235 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE
Confidence 5555443 779999999987676666654
No 290
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=1.2e-20 Score=179.19 Aligned_cols=147 Identities=14% Similarity=0.226 Sum_probs=103.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.|. .+.+++
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 46888888543234588999999999999999999999999999999999987442 122333
Q ss_pred CCCccccC---------C-CCCcccc-------c---------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------G-DIPHSAI-------G---------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~-~~~~~~~-------~---------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... . ......+ . .......+|+||+||.++|||+..+|+++|+
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 32211100 0 0000000 0 0011234699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|... +.++...|.|+|+++|..+..+.+++
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~ 522 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDK 522 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence 99999999876 22333357899999999887665443
No 291
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=5.5e-21 Score=162.85 Aligned_cols=135 Identities=17% Similarity=0.202 Sum_probs=101.0
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-cccc------------CCCCCcccccc
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGG------------DGDIPHSAIGT 176 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-ei~~------------~~~~~~~~~~~ 176 (254)
...+++++.+.+|++++|+|.+||||||+.|+|+|++.|+. +.|.+-.... .+.. ....+... .
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~--~ 103 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEF--L 103 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHH--h
Confidence 46788999999999999999999999999999999999984 4444432210 0000 00000000 0
Q ss_pred ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 177 ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 177 ~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.+....+||||+||+.+|||+..+|++|++|||.+++|... +.++.+ .|.+.++++|+.++...+++++..
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~V 182 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAV 182 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEE
Confidence 12234469999999999999999999999999999999854 334433 489999999999999999887654
No 292
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-20 Score=162.09 Aligned_cols=148 Identities=15% Similarity=0.149 Sum_probs=101.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI---------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~~---------------- 156 (254)
+.+++++++... .++++++.+.+|++++|+|+||||||||+++|+|+++++ ..+.+.+
T Consensus 10 ~~~l~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 10 VKDLSFYYNTSK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred EEEEEEEECCeE--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhh
Confidence 457888876532 588999999999999999999999999999999998742 1222222
Q ss_pred -----EcCCCccccC-------------CCCCccc----c-------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 157 -----VDTSNEIGGD-------------GDIPHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 157 -----~~~~~ei~~~-------------~~~~~~~----~-------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
+.+...+... ...+... . + ..+....+|+|++||+++++|+..
T Consensus 88 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 167 (259)
T PRK14260 88 RQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI 167 (259)
T ss_pred hheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1111110000 0000000 0 0 001223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+++|+|||++++|... +.++. .+.++|+++|+.+....++++++.
T Consensus 168 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~i~~~~d~i~~ 221 (259)
T PRK14260 168 KPKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTHNMQQATRVSDFTAF 221 (259)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCeEEE
Confidence 999999999999999876 33333 368999999998777766665443
No 293
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=1.1e-20 Score=178.53 Aligned_cols=150 Identities=21% Similarity=0.176 Sum_probs=104.0
Q ss_pred EEEEEEEECc---eeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE-cC-------------
Q 025371 97 IVGLTCRVGR---AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-DT------------- 159 (254)
Q Consensus 97 ~~~l~ir~~~---~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~-~~------------- 159 (254)
+.+++++|.. .....++++++.+.+|++++|+||||||||||+++|+|+++|+.| .|.+- ..
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~g~~~~~~~~~~~~~~ 360 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG-EVNVRVGDEWVDMTKPGPDGR 360 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEEecCCccccccccchhhH
Confidence 3466676632 111247889999999999999999999999999999999987633 33321 10
Q ss_pred ---CCccccCC----CCCc-----------------c----c-------ccc---------ccccCCCChhHHHHHHHHH
Q 025371 160 ---SNEIGGDG----DIPH-----------------S----A-------IGT---------ARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 160 ---~~ei~~~~----~~~~-----------------~----~-------~~~---------~~~~~~~s~g~~~~~~l~~ 195 (254)
...+++.. ..+. . . ++. .+....+|+||+||+++++
T Consensus 361 ~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~lar 440 (520)
T TIGR03269 361 GRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQ 440 (520)
T ss_pred HHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHH
Confidence 00111110 0000 0 0 000 1223357999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||..+|++||+|||++++|... +.++.+ .|.++|+++|+.+....++++++.
T Consensus 441 al~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~ 500 (520)
T TIGR03269 441 VLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAAL 500 (520)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999876 333434 488999999998888777776643
No 294
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=6.9e-21 Score=179.46 Aligned_cols=136 Identities=16% Similarity=0.156 Sum_probs=97.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-CCCCeE--------------------EEEcCCCc---cccC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRV--------------------VIVDTSNE---IGGD 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-~~~~~i--------------------~~~~~~~e---i~~~ 166 (254)
.++++++.+++|++++|+||||||||||+++|+|+++| +. +.| .++.+... +...
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE-GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC-cEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCC
Confidence 57888999999999999999999999999999999873 42 222 22222210 0000
Q ss_pred ---------C---CCC-----cc-----cc-------c-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 167 ---------G---DIP-----HS-----AI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 167 ---------~---~~~-----~~-----~~-------~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
. ... .. .. + ..+....+|+||+||+++++++..+|++||+|||+++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~ 435 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 0 000 00 00 0 0112345699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+.. +.++++.|.++|+++|+.+....++++++.
T Consensus 436 LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~ 477 (506)
T PRK13549 436 IDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLV 477 (506)
T ss_pred cCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 99876 444556799999999998877777666543
No 295
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=164.92 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=101.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVV----------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~----------------- 155 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|+++|. ..+.|.
T Consensus 24 i~nl~~~~~~~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 24 AVNLTLGFAGKT--VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred EeeEEEEECCEE--EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 568888887543 488999999999999999999999999999999998752 122222
Q ss_pred ---EEcCCCccccC--------CC-----CCcccc-----------cc--------ccccCCCChhHHHHHHHHHHHccC
Q 025371 156 ---IVDTSNEIGGD--------GD-----IPHSAI-----------GT--------ARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 156 ---~~~~~~ei~~~--------~~-----~~~~~~-----------~~--------~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
++.+...+... .. ...... +. .+....+|+|++||+++++++..+
T Consensus 102 ~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~ 181 (276)
T PRK14271 102 RVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN 181 (276)
T ss_pred heEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 22221110000 00 000000 00 011234799999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++||+|||++++|... +.++.+ +.++|+++|+.+....+.++++
T Consensus 182 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~ 233 (276)
T PRK14271 182 PEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAA 233 (276)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999876 233333 5799999999887666555543
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.84 E-value=2.1e-20 Score=161.62 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=101.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.++++++.......++.+++.+++|++++|+|+||||||||+++|+|++++..|. .+.++.
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~ 101 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIIL 101 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEEC
Confidence 45788887642223588899999999999999999999999999999999876432 122222
Q ss_pred CCCccccC---CCC-Ccc-----ccc-------c---c------------cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---GDI-PHS-----AIG-------T---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---~~~-~~~-----~~~-------~---~------------~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+...+... ... +.. ... . . .....+|+|++||+++++++..+|++||+|
T Consensus 102 q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 181 (257)
T cd03288 102 QDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD 181 (257)
T ss_pred CCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22111000 000 000 000 0 0 112357999999999999999999999999
Q ss_pred CCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhCChh
Q 025371 208 EIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 208 Ep~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
||++++|+.....+ ...+.++|+++|..+.... ++++
T Consensus 182 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri 224 (257)
T cd03288 182 EATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLV 224 (257)
T ss_pred CCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEE
Confidence 99999998762221 1348899999999877765 4444
No 297
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=161.93 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=100.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--c---CCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~---~~~~------------------- 152 (254)
+.++++++... ..++++++.+.+|++++|+|+||||||||+++|+|+.+ + ..|.
T Consensus 8 ~~~l~~~~~~~--~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 8 VKNLNLWYGSK--QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred eeeEEEEECCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 45788888643 25888999999999999999999999999999999975 2 2221
Q ss_pred -eEEEEcCCCccccC--------C----CCC-c-cc-----------ccc--------ccccCCCChhHHHHHHHHHHHc
Q 025371 153 -RVVIVDTSNEIGGD--------G----DIP-H-SA-----------IGT--------ARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 153 -~i~~~~~~~ei~~~--------~----~~~-~-~~-----------~~~--------~~~~~~~s~g~~~~~~l~~al~ 198 (254)
++.++.+...+... . ... . .. ++. .+....+|+|++||+++++++.
T Consensus 86 ~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 86 AKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 12222222111000 0 000 0 00 000 0122347999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++||+|||++++|..+ +.++ ..|.++|+++|+.+....+.++++
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~ 219 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVA 219 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEE
Confidence 9999999999999999876 3333 348899999999887666555543
No 298
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.84 E-value=1.4e-20 Score=158.47 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=92.9
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-CccccCC-CCCcc----cc-------c---
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDG-DIPHS----AI-------G--- 175 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-~ei~~~~-~~~~~----~~-------~--- 175 (254)
++++++.+++|++++|+||||||||||+++|+|+++|+.|. +..++.. ..+.... ..+.. ++ .
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~-i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD-FIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC-EEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 56788889999999999999999999999999999887554 3212211 0010000 00000 00 0
Q ss_pred ----------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---HHH-HH--hCCceEEEEEc
Q 025371 176 ----------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS-IA--ERGVMLIGTAH 233 (254)
Q Consensus 176 ----------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---~~~-~~--~~G~~vi~t~H 233 (254)
.......+|+|++||+++++|+..+|+++|+|||++++|... +.+ +. ..+.++|+++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 012234569999999999999999999999999998888765 222 11 13567999999
Q ss_pred hhhHHHHhCChhh
Q 025371 234 GEWLENIIKNPIL 246 (254)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (254)
+.+....+++.++
T Consensus 162 ~~~~~~~~~d~i~ 174 (213)
T PRK15177 162 NPRLIKEHCHAFG 174 (213)
T ss_pred CHHHHHHhcCeeE
Confidence 9887776666554
No 299
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=168.88 Aligned_cols=150 Identities=16% Similarity=0.147 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-----CCCC-------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-----EFQK------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-----~~~~------------------- 152 (254)
+.++++++.......++++++.+.+|+.++|+|+||||||||+++|+|+..+ +.|.
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr 162 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR 162 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhh
Confidence 4578888753222358899999999999999999999999999999999853 2221
Q ss_pred -eEEEEcCCCccccCC-----CC-C------cccc------------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 153 -RVVIVDTSNEIGGDG-----DI-P------HSAI------------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 153 -~i~~~~~~~ei~~~~-----~~-~------~~~~------------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++.++.+...+.... .+ + .... . .......+|+|++||+++|||+..
T Consensus 163 ~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~ 242 (329)
T PRK14257 163 TRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL 242 (329)
T ss_pred ccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 123332221111000 00 0 0000 0 012223469999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|++||+|||++++|+.. +.++. .+.|+|+++|..+....++++++.
T Consensus 243 ~p~IlLLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 243 EPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999876 33333 368999999998877776666544
No 300
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.84 E-value=1.4e-20 Score=183.61 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=104.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..+++++|+......++++++.+++|+.++|+|+||||||||++.|+|+++|+.|. .+.++.
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~ 545 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC
Confidence 56899998654334688999999999999999999999999999999999987442 222333
Q ss_pred CCCccccC---------C-CCCcccc------------------cc----ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD---------G-DIPHSAI------------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---------~-~~~~~~~------------------~~----~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+... . ......+ +. ...-..+|+||+||.++|||+..+|+++|+
T Consensus 546 Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred CChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 32211100 0 0000000 00 011234799999999999999999999999
Q ss_pred eCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|......+ ...+.|+|+++|..+....+++
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ 668 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR 668 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCE
Confidence 999999998762222 1247899999999988776544
No 301
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=174.39 Aligned_cols=155 Identities=18% Similarity=0.203 Sum_probs=110.2
Q ss_pred EEEEEEEECcee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC---CCeEEEEcCC-----------
Q 025371 97 IVGLTCRVGRAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF---QKRVVIVDTS----------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~---~~~i~~~~~~----------- 160 (254)
+.++++.+.... ...++++++.+.+||.++|+|.+||||||++++|.|++++.. +++|.+-...
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~ 87 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK 87 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence 557777775441 235789999999999999999999999999999999998752 2333332210
Q ss_pred ---CccccCC------CCCccccc---------------------------------ccc---ccCCCChhHHHHHHHHH
Q 025371 161 ---NEIGGDG------DIPHSAIG---------------------------------TAR---RMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 161 ---~ei~~~~------~~~~~~~~---------------------------------~~~---~~~~~s~g~~~~~~l~~ 195 (254)
.++++.. ..|-..++ ... ....+||||+||+++|+
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAm 167 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAM 167 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHH
Confidence 1111100 00100000 001 12346999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhhhhhcc
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILSDLVCS 252 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~~l~~g 252 (254)
|++.+|++||+||||+.+|... ++++. +.|.++|++||+..+...++++++. |..|
T Consensus 168 ALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~V-m~~G 231 (539)
T COG1123 168 ALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVV-MYKG 231 (539)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEE-EECC
Confidence 9999999999999999999865 44444 5699999999999999999988765 4433
No 302
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-20 Score=178.05 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=97.9
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEEcCCC---ccccC--
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSN---EIGGD-- 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~~~~~---ei~~~-- 166 (254)
.++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.. .+...
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 578889999999999999999999999999999999876321 122332220 00000
Q ss_pred ----CCCC---------------cc-c-----------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 167 ----GDIP---------------HS-A-----------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 167 ----~~~~---------------~~-~-----------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
.... .. . ++ ..+....+|+||+||+++++++..+|++||+|||+
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 0000 00 0 00 01122346999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~ 481 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAV 481 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE
Confidence 9999876 444456689999999998877777776544
No 303
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.84 E-value=1.5e-20 Score=161.76 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=93.7
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EEcCCCccccC-----
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IVDTSNEIGGD----- 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~~~~~ei~~~----- 166 (254)
.++++++.+.+|++++|+||||||||||+++|+|++++ .+.+. ++.+...+...
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 47788899999999999999999999999999999864 23322 22211100000
Q ss_pred ----C-CC-Cccc-----c-------c----cccccCCCChhHHHHHHHHHHHcc-------CCCEEEEeCCCchHHHHH
Q 025371 167 ----G-DI-PHSA-----I-------G----TARRMQVPEPSLQHKVMIEAVENH-------MPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 167 ----~-~~-~~~~-----~-------~----~~~~~~~~s~g~~~~~~l~~al~~-------~P~viilDEp~~~ld~~~ 217 (254)
. .. .... . + ..+....+|+|++||+++++++.. +|++||+|||++++|...
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 0 00 0000 0 0 012234469999999999999997 679999999999999876
Q ss_pred -------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 218 -------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 -------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.++.+.|.++|+++|+.+....+++.++
T Consensus 169 ~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 169 QAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 34444568999999999886666666554
No 304
>PLN03073 ABC transporter F family; Provisional
Probab=99.84 E-value=2.2e-20 Score=181.60 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=105.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCc--cccCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE--IGGDG 167 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~e--i~~~~ 167 (254)
+.+++++|+... ..++++++.+.+|++++|+|||||||||||++|+|+++|+.|. ++.++.+... +....
T Consensus 511 ~~~ls~~y~~~~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~ 589 (718)
T PLN03073 511 FSDASFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSS 589 (718)
T ss_pred EEeeEEEeCCCC-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcch
Confidence 457777774321 2478899999999999999999999999999999999887442 2334443210 00000
Q ss_pred --------CCCcc---c-------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH---
Q 025371 168 --------DIPHS---A-------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI--- 221 (254)
Q Consensus 168 --------~~~~~---~-------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~--- 221 (254)
..+.. . ++ ..+....+|+|++||+++++++..+|++||||||++++|......+
T Consensus 590 ~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~ 669 (718)
T PLN03073 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQG 669 (718)
T ss_pred hHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00000 0 00 0123456799999999999999999999999999999998863322
Q ss_pred -HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 222 -AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 222 -~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.+.+.++|+++|+......++++++.
T Consensus 670 L~~~~gtvIivSHd~~~i~~~~drv~~ 696 (718)
T PLN03073 670 LVLFQGGVLMVSHDEHLISGSVDELWV 696 (718)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 23244999999998888877776543
No 305
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.9e-20 Score=160.27 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=100.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc--C--CCCeE------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--E--FQKRV------------------ 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~--~--~~~~i------------------ 154 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|++.+ + ..+.+
T Consensus 9 ~~~l~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (253)
T PRK14261 9 TKNLNLWYGEKH--ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALR 86 (253)
T ss_pred EeeeEEEECCee--eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhh
Confidence 457888776433 58899999999999999999999999999999998752 1 01222
Q ss_pred ---EEEcCCCccc---------cCCC----CCccc----c-------c--------cccccCCCChhHHHHHHHHHHHcc
Q 025371 155 ---VIVDTSNEIG---------GDGD----IPHSA----I-------G--------TARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 155 ---~~~~~~~ei~---------~~~~----~~~~~----~-------~--------~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.++.+...+. +... ..... . . ..+....+|+|++||+++++++..
T Consensus 87 ~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14261 87 RKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV 166 (253)
T ss_pred ceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 2222211110 0000 00000 0 0 001223479999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|+++|+|||++++|... +.++.+ +.++|+++|+.+....+.++++
T Consensus 167 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~ 219 (253)
T PRK14261 167 NPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTG 219 (253)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEE
Confidence 999999999999999876 333333 6899999999877665555543
No 306
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.9e-20 Score=159.97 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=101.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEEE----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVI---------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~~---------------- 156 (254)
+.++++++.... .++++++.+.+|++++|+|+||||||||+++|+|++.|. ..+.+.+
T Consensus 19 ~~~l~~~~~~~~--vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~ 96 (265)
T PRK14252 19 VNKLNFYYGGYQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIE 96 (265)
T ss_pred EEEEEEEECCee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHH
Confidence 458888886543 588999999999999999999999999999999998641 1222222
Q ss_pred -------EcCCCccccC--------C----CCCc-----cc-------ccc--------ccccCCCChhHHHHHHHHHHH
Q 025371 157 -------VDTSNEIGGD--------G----DIPH-----SA-------IGT--------ARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 157 -------~~~~~ei~~~--------~----~~~~-----~~-------~~~--------~~~~~~~s~g~~~~~~l~~al 197 (254)
+.+...+... . .... .. ... .+....+|+|++||+++++++
T Consensus 97 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 97 VRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred HhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1111100000 0 0000 00 000 012234799999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|+++|+|||++++|... +.++. .+.++|+++|+.+....++++++
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~~~tiiivth~~~~~~~~~d~i~ 231 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLK-NKVTILIVTHNMQQAARVSDYTA 231 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999876 33333 36899999999877766655553
No 307
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.84 E-value=2.1e-20 Score=163.02 Aligned_cols=145 Identities=13% Similarity=0.159 Sum_probs=100.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.++++++.......++++++.+++|+.++|+|+||||||||+++|+|+++ . .+.|. ++
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 468888885322236899999999999999999999999999999999987 3 33332 22
Q ss_pred cCCCccccC---CCC------Ccccc-------cc----cccc-----------CCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 158 DTSNEIGGD---GDI------PHSAI-------GT----ARRM-----------QVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 158 ~~~~ei~~~---~~~------~~~~~-------~~----~~~~-----------~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
.+...+... ..+ ..... +. .... ..+|+|++|++++++|+..+|++|++
T Consensus 83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl 162 (275)
T cd03289 83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 (275)
T ss_pred CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222111000 000 00000 00 0111 12799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|... +.+. ..++|+|+++|..+.... ++++
T Consensus 163 DEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~-~dri 206 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLE-CQRF 206 (275)
T ss_pred ECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHh-CCEE
Confidence 99999999876 2222 347899999999877765 4544
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=3e-20 Score=176.92 Aligned_cols=149 Identities=18% Similarity=0.269 Sum_probs=105.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCC-ccccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~-ei~~~-- 166 (254)
+.+++++++... .++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.. .+...
T Consensus 327 ~~~l~~~~~~~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 327 AENLSKSFGDRL--LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 404 (556)
T ss_pred EEeEEEEECCee--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCC
Confidence 457777775533 588899999999999999999999999999999999886432 233444432 11100
Q ss_pred --------CC---CCccc---------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH
Q 025371 167 --------GD---IPHSA---------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI 221 (254)
Q Consensus 167 --------~~---~~~~~---------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~ 221 (254)
.. ..... ++ ..+....+|+|++||+++++++..+|+++|+|||++++|......+
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 00 00000 00 0123445799999999999999999999999999999998873332
Q ss_pred ---H-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 222 ---A-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 222 ---~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
. +...++|+++|+.+....++++++.
T Consensus 485 ~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~ 514 (556)
T PRK11819 485 EEALLEFPGCAVVISHDRWFLDRIATHILA 514 (556)
T ss_pred HHHHHhCCCeEEEEECCHHHHHHhCCEEEE
Confidence 2 2234899999998877777766543
No 309
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.84 E-value=1.6e-20 Score=177.84 Aligned_cols=146 Identities=13% Similarity=0.124 Sum_probs=102.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......+++++..+++|+.++|+||||||||||++.|+|+++|+.|. ++.++.
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 56888888653323588999999999999999999999999999999999987432 122222
Q ss_pred CCCccccC----------CCCCcccccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+... .......... ...-..+||||+||.++|||+..+|+++|+
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22211100 0000000000 011234699999999999999999999999
Q ss_pred eCCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhC
Q 025371 207 DEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 207 DEp~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~ 242 (254)
|||++++|......+ . ..+.|+|+++|..+....++
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERAD 524 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCC
Confidence 999999998872222 1 25789999999988776543
No 310
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.84 E-value=2.3e-20 Score=178.84 Aligned_cols=146 Identities=15% Similarity=0.190 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+.. ...+++++..+++|+.++|+|+||||||||++.|+|+++|..|. ++.+++
T Consensus 337 ~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 415 (588)
T PRK13657 337 FDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVF 415 (588)
T ss_pred EEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEe
Confidence 56888888642 23588999999999999999999999999999999999986432 233443
Q ss_pred CCCccccC--------C--CCCcccc-------c-----------cc----cccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD--------G--DIPHSAI-------G-----------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~--------~--~~~~~~~-------~-----------~~----~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... . ......+ + .. ..-..+|+||+||.++|||+..+|+++|+
T Consensus 416 Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliL 495 (588)
T PRK13657 416 QDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495 (588)
T ss_pred cCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33222111 0 0000000 0 00 11123699999999999999999999999
Q ss_pred eCCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|......+ . ..++|+|+++|..+..+.+++
T Consensus 496 DEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ 538 (588)
T PRK13657 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADR 538 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCE
Confidence 999999998873222 1 247899999999887776543
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.84 E-value=1.4e-20 Score=177.06 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=97.6
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-CCCCeEE--------------------EEcCCCc---cccC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVV--------------------IVDTSNE---IGGD 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-~~~~~i~--------------------~~~~~~e---i~~~ 166 (254)
.++++++.+.+|++++|+||||||||||+++|+|+++| +. +.|. ++.+... +...
T Consensus 275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~-G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 353 (500)
T TIGR02633 275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE-GNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPI 353 (500)
T ss_pred ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC-eEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCC
Confidence 57888999999999999999999999999999999974 32 2222 2222110 0000
Q ss_pred ---------CC---C------Ccc----cc-------c-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 167 ---------GD---I------PHS----AI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 167 ---------~~---~------~~~----~~-------~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
.. . ... .+ + ..+....+|+||+||+++++++..+|++||+|||+++
T Consensus 354 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 433 (500)
T TIGR02633 354 LGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRG 433 (500)
T ss_pred CCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 00 0 000 00 0 0122335799999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 434 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~ 475 (500)
T TIGR02633 434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLV 475 (500)
T ss_pred cCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 99876 345556799999999998877777766653
No 312
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=1.7e-20 Score=177.75 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=102.9
Q ss_pred EEEEEEEECce---------eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE-------------
Q 025371 97 IVGLTCRVGRA---------VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~---------~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i------------- 154 (254)
+.+++++|+.. ....++++++.+++|++++|+||||||||||+++|+|+++ + .+.|
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~-~G~i~~~g~~i~~~~~~ 355 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S-QGEIWFDGQPLHNLNRR 355 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C-CcEEEECCEEccccchh
Confidence 45777777420 1125788999999999999999999999999999999985 3 2222
Q ss_pred ---------EEEcCCCc--cccC---------C-C-----CCccc-----------ccc-----ccccCCCChhHHHHHH
Q 025371 155 ---------VIVDTSNE--IGGD---------G-D-----IPHSA-----------IGT-----ARRMQVPEPSLQHKVM 192 (254)
Q Consensus 155 ---------~~~~~~~e--i~~~---------~-~-----~~~~~-----------~~~-----~~~~~~~s~g~~~~~~ 192 (254)
.++.+... +... . . ..... ++. .+....+|+||+||++
T Consensus 356 ~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 435 (529)
T PRK15134 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIA 435 (529)
T ss_pred hHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHH
Confidence 22222210 0000 0 0 00000 000 1223457999999999
Q ss_pred HHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 193 IEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++++..+|++||+|||++++|... +.++++. |.++|+++|+.+....++++++.
T Consensus 436 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~ 498 (529)
T PRK15134 436 IARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV 498 (529)
T ss_pred HHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEE
Confidence 9999999999999999999999876 4444444 88999999998877766666543
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=5.3e-20 Score=161.10 Aligned_cols=134 Identities=10% Similarity=0.004 Sum_probs=95.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccC---------CCCCc---cc
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD---------GDIPH---SA 173 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~---------~~~~~---~~ 173 (254)
.++++++.+.+|++++|+|+||||||||+++|+|+++|..|. ++.++.+...+... ..... ..
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~ 131 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKS 131 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHH
Confidence 578889999999999999999999999999999999887442 24445443322100 00000 00
Q ss_pred ----cccc---------------cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---HHH-H---HhCCce
Q 025371 174 ----IGTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRS-I---AERGVM 227 (254)
Q Consensus 174 ----~~~~---------------~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---~~~-~---~~~G~~ 227 (254)
.... .....+|+|++||+++++++..+|+++|+|||++++|+.. +.+ + ...+.+
T Consensus 132 ~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~t 211 (282)
T cd03291 132 VVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKT 211 (282)
T ss_pred HHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCE
Confidence 0000 0123679999999999999999999999999999999876 222 1 134789
Q ss_pred EEEEEchhhHHHHhCChh
Q 025371 228 LIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 228 vi~t~H~~~~~~~~~~~~ 245 (254)
+|+++|+...... .+++
T Consensus 212 IiiisH~~~~~~~-~d~i 228 (282)
T cd03291 212 RILVTSKMEHLKK-ADKI 228 (282)
T ss_pred EEEEeCChHHHHh-CCEE
Confidence 9999999877654 4444
No 314
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=3e-20 Score=178.08 Aligned_cols=145 Identities=13% Similarity=0.106 Sum_probs=99.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..++++.+... ...++++++.+++|+.++|+||||||||||++.|+|++ |+.|. ++.+++
T Consensus 352 ~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 429 (588)
T PRK11174 352 AEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVG 429 (588)
T ss_pred EEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEec
Confidence 34666544332 23588999999999999999999999999999999999 65332 223333
Q ss_pred CCCccccCC-----CC--Cc---cccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGDG-----DI--PH---SAIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~~-----~~--~~---~~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+.... .+ +. ..+. .. .+-..+||||+||.++|||+..+|+++|+
T Consensus 430 Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliL 509 (588)
T PRK11174 430 QNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLL 509 (588)
T ss_pred CCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 332221100 00 00 0000 00 11224699999999999999999999999
Q ss_pred eCCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|......+ . ..++|+|+++|..+..+.+++
T Consensus 510 DE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~ 552 (588)
T PRK11174 510 DEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQ 552 (588)
T ss_pred eCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCE
Confidence 999999998872222 1 257899999999887776544
No 315
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=176.05 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=98.5
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------EcCCCc----cccC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------------VDTSNE----IGGD 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~--------------------~~~~~e----i~~~ 166 (254)
.++.+++.+++|++++|+||||||||||+++|+|+.+|+.| .|.+ +.+... +...
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAG-TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc-EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 47788888999999999999999999999999999987633 3322 111100 0000
Q ss_pred --------CCC----------Ccc-------------ccc---cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 167 --------GDI----------PHS-------------AIG---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 167 --------~~~----------~~~-------------~~~---~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..+ ... .+. ..+....+|+||+||+++++++..+|++||+|||+++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 000 000 000 0123345699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~ 463 (491)
T PRK10982 422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV 463 (491)
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE
Confidence 99876 344456799999999998888777777654
No 316
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.8e-20 Score=158.08 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=100.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC--c---CCCCeE-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS--D---EFQKRV----------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~---~~~~~i----------------- 154 (254)
+.++++++.... .++++++.+.+|++++|+||||||||||+++|+|+.. + + .+.+
T Consensus 6 ~~~v~~~~~~~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~-~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH-EGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCC-ccEEEECCEEcccccccHHHH
Confidence 457888776433 5889999999999999999999999999999999864 2 3 2222
Q ss_pred ----EEEcCCCccccC--------C-CCC----cccc-----------c--------cccccCCCChhHHHHHHHHHHHc
Q 025371 155 ----VIVDTSNEIGGD--------G-DIP----HSAI-----------G--------TARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 155 ----~~~~~~~ei~~~--------~-~~~----~~~~-----------~--------~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.++.+...+... . ... .... + ..+....+|+|++||+++++++.
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 222221111000 0 000 0000 0 00123457999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|++|++|||++++|..+ +.++ .+|.++|+++|+......+++.++
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEE
Confidence 9999999999999999876 3333 347899999999877777666543
No 317
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.83 E-value=2.5e-20 Score=177.95 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|.......++++++.+++|+.++|+|+||||||||+++|+|+++|+.|. ++.+++
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 56888888543223588999999999999999999999999999999999987432 123333
Q ss_pred CCCccccC--------C---CCCcccc-------c-----------cc----cccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 159 TSNEIGGD--------G---DIPHSAI-------G-----------TA----RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 159 ~~~ei~~~--------~---~~~~~~~-------~-----------~~----~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
|...+... . ......+ + .. ..-..+|+||+||.+++|++..+|++++
T Consensus 413 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ill 492 (571)
T TIGR02203 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI 492 (571)
T ss_pred cCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33222111 0 0000000 0 00 1112469999999999999999999999
Q ss_pred EeCCCchHHHHHHHHHH------hCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHACRSIA------ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~~~~~~------~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++++|......+. ..++|+|++||..+....+++
T Consensus 493 LDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 493 LDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred EeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCE
Confidence 99999999988733221 247899999999987766543
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.83 E-value=2.9e-20 Score=194.50 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=108.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE------------------Ec
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI------------------VD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~------------------~~ 158 (254)
+.+++++|+......++++++.+++|++++|+||||||||||+|+|+|+++|+.| .|.+ +.
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG-~I~i~G~~i~~~~~~~r~~IGy~p 2018 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG-DATVAGKSILTNISDVHQNMGYCP 2018 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECcchHHHHhhhEEEEe
Confidence 5678888864222358899999999999999999999999999999999998743 3322 22
Q ss_pred CCCccccC-------------CCCCccccc---------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGD-------------GDIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~-------------~~~~~~~~~---------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+... ...+..... ..++...+|+|++||+.+|+|+..+|++|++|||+
T Consensus 2019 Q~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPT 2098 (2272)
T TIGR01257 2019 QFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPT 2098 (2272)
T ss_pred ccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 21111000 000000000 01233457999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++|+.+ +.++.+.|+++|+|+|+.+..+.++++++.
T Consensus 2099 sGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~I 2142 (2272)
T TIGR01257 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAI 2142 (2272)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999987 444556689999999998877777776543
No 319
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.83 E-value=3.9e-20 Score=176.65 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=102.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|.......++++++.+++|+.++|+||||||||||+++|+|+++|+.|. .+.++.
T Consensus 316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 45778887643333688999999999999999999999999999999999987442 122222
Q ss_pred CCCccccC----------CCCCcccccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD----------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~----------~~~~~~~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+... .......... ......+|+||+||.++|||+..+|+++|+
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111100 0000000000 011124699999999999999999999999
Q ss_pred eCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|......+ ...|.|+|+++|..+....+++
T Consensus 476 DEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~ 518 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASE 518 (569)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCE
Confidence 999999998762211 1358899999999877665443
No 320
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=3e-20 Score=155.73 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=102.6
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCC-CCCc----ccc----------
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG-DIPH----SAI---------- 174 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~-~~~~----~~~---------- 174 (254)
..++++++.+.+|+.++|+|+||||||||+|.|+|.++|+.|+-.+.-.-..-+.... ..|. .++
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~ 120 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLT 120 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCcc
Confidence 4588899999999999999999999999999999999998554222111111111110 0011 000
Q ss_pred -------------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceE
Q 025371 175 -------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVML 228 (254)
Q Consensus 175 -------------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~v 228 (254)
.....+..+|.||+.|.+++.|...+||+||+||..+--|+.- +.++.+.+.++
T Consensus 121 ~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~ti 200 (249)
T COG1134 121 RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEE
Confidence 0014455679999999999999999999999999988767653 45555778999
Q ss_pred EEEEchhhHHHHhCChhhh
Q 025371 229 IGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 229 i~t~H~~~~~~~~~~~~~~ 247 (254)
|+++|+.+....+|+++++
T Consensus 201 v~VSHd~~~I~~~Cd~~i~ 219 (249)
T COG1134 201 VLVSHDLGAIKQYCDRAIW 219 (249)
T ss_pred EEEECCHHHHHHhcCeeEE
Confidence 9999999999998888876
No 321
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.9e-20 Score=176.50 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=104.2
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
..++++.|+.. ....++++++.+++|+.++++||+||||||+.+.|.+++.|+.|. +|.++
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeee
Confidence 45788888654 335789999999999999999999999999999999999998432 12222
Q ss_pred cCCCc---------cccCCCCC-ccccc------------------c----ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNE---------IGGDGDIP-HSAIG------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~e---------i~~~~~~~-~~~~~------------------~----~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.|.+- |.|..... ...+. . -.+-..+|||||||.+|||||..+|.+||
T Consensus 548 ~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLI 627 (716)
T KOG0058|consen 548 GQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLI 627 (716)
T ss_pred eccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEE
Confidence 22111 11110000 00000 0 01222469999999999999999999999
Q ss_pred EeCCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||.|+.+|++. +.++. -.++|||++.|..+..+..+.
T Consensus 628 LDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~ 671 (716)
T KOG0058|consen 628 LDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQ 671 (716)
T ss_pred EechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccE
Confidence 999999999876 33333 247999999999887766553
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=2.4e-20 Score=175.98 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=98.2
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEEcCCCc---cccCCC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNE---IGGDGD 168 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~~~~~e---i~~~~~ 168 (254)
.++.+++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+... +.....
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 477888899999999999999999999999999999876321 1222222110 000000
Q ss_pred ------------CCc---cc------------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 169 ------------IPH---SA------------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 169 ------------~~~---~~------------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
... .. ++ ..+....+|+||+||+++++++..+|++||+|||++++|..
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 000 00 00 01223457999999999999999999999999999999987
Q ss_pred H-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 217 A-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 217 ~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
. +.++.+.|.++|+++|+.+....++++++.
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~ 475 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV 475 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 6 344455689999999998888777776654
No 323
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.83 E-value=2.6e-20 Score=181.99 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=104.1
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
..+++++|+.. ....++++++.+++|+.++|+||||||||||++.|+|+++|+.|. ++.++
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 560 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALV 560 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEE
Confidence 56888888642 224688999999999999999999999999999999999987432 22333
Q ss_pred cCCCccccC----------CCCCccccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD----------GDIPHSAIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+|...+... .......+. .. ..-..+|+||+||.++|||+..+|+++|
T Consensus 561 ~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILI 640 (711)
T TIGR00958 561 GQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLI 640 (711)
T ss_pred ecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 332222110 000000000 00 1112469999999999999999999999
Q ss_pred EeCCCchHHHHHHHHHH----hCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHACRSIA----ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~~~~~~----~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++++|......+. ..++|+|+++|..+..+.+++
T Consensus 641 LDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~ 682 (711)
T TIGR00958 641 LDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQ 682 (711)
T ss_pred EEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCE
Confidence 99999999987733222 247899999999887766544
No 324
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=3.9e-20 Score=177.39 Aligned_cols=146 Identities=15% Similarity=0.131 Sum_probs=103.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..+++++|+.. ...++++++.+++|+.++|+|+||||||||++.|+|+++|+.|. ++.+++
T Consensus 343 ~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 343 IDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 45788888643 23688999999999999999999999999999999999987432 123333
Q ss_pred CCCccccC---------CCCCcccccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---------GDIPHSAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
|...+... .......+.. ...-..+||||+||.++|||+..+|++||+|
T Consensus 422 Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 422 QDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred cCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 33222110 0000000000 0111236999999999999999999999999
Q ss_pred CCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhCC
Q 025371 208 EIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 208 Ep~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~~ 243 (254)
||++++|..+...+ . ..++|+|+++|..+....+++
T Consensus 502 Epts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ 543 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADT 543 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999998872222 1 246899999999887776544
No 325
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.2e-20 Score=174.78 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=98.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------EcCCCc---ccc-C
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--------------------VDTSNE---IGG-D 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~--------------------~~~~~e---i~~-~ 166 (254)
.++++++.+++|++++|+||||||||||+++|+|+++|+. +.|.+ +.+... +.. .
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA-GQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC-ceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 5788888999999999999999999999999999998763 33322 111110 000 0
Q ss_pred --------CCCCc---------c-----cc-------cc-----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 167 --------GDIPH---------S-----AI-------GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 167 --------~~~~~---------~-----~~-------~~-----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
..... . .. +. .+....+|+||+||+++++++..+|++||||||+++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 00000 0 00 00 122335699999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~ 468 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVV 468 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEE
Confidence 99876 344456799999999998888777777654
No 326
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=3.6e-20 Score=146.20 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=103.0
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccc-------------
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------------- 164 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~------------- 164 (254)
.++++.|+... .+-++.+..+.|+.+.+.||+|+|||||+|.|.-+.-|..|.-.+ -...-.+.
T Consensus 6 ~~in~~yg~~q--~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~i-a~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 6 NGINCFYGAHQ--ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI-AGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccccccch--heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEe-cccccccccCccHHHHHHHHH
Confidence 45666666543 366777778899999999999999999999999887776444222 11110000
Q ss_pred ---cC----CCCCcccccc------------------------c----------cccCCCChhHHHHHHHHHHHccCCCE
Q 025371 165 ---GD----GDIPHSAIGT------------------------A----------RRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 165 ---~~----~~~~~~~~~~------------------------~----------~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
.. ...||..+.. . +-...+|||++||++++|||+++|++
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE
Confidence 00 1122221100 0 01112499999999999999999999
Q ss_pred EEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 204 IIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 204 iilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+++|||++.+|++. ++++..+|+|-++++|..+++.....++
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~v 211 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhhe
Confidence 99999999999874 7788899999999999988887776554
No 327
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.82 E-value=5.8e-20 Score=175.62 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=103.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+||||||||||++.|+|+++|+.|. .+.++.
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 420 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVS 420 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEc
Confidence 56888888653223688999999999999999999999999999999999987442 122333
Q ss_pred CCCccccC-------CCCCc---ccc-------c--c--c----------cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD-------GDIPH---SAI-------G--T--A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~-------~~~~~---~~~-------~--~--~----------~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
|...+... ...+. ..+ + . . .....+|+||+||.++|||+..+|+++|+|
T Consensus 421 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD 500 (574)
T PRK11160 421 QRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD 500 (574)
T ss_pred ccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 32211100 00000 000 0 0 0 122347999999999999999999999999
Q ss_pred CCCchHHHHHHHHH---H---hCCceEEEEEchhhHHHHhCC
Q 025371 208 EIGTEAEAHACRSI---A---ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 208 Ep~~~ld~~~~~~~---~---~~G~~vi~t~H~~~~~~~~~~ 243 (254)
||++++|..+...+ . ..+.|+|+++|..+....+++
T Consensus 501 E~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~ 542 (574)
T PRK11160 501 EPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDR 542 (574)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCE
Confidence 99999998772221 1 247899999999887766543
No 328
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=99.82 E-value=4.1e-19 Score=154.05 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=119.7
Q ss_pred CCceeEEcCc--eeEEeEEecCCCcEEEEEEEECceeec--ch----------hhhhccc-cCCcEEEEECCCCCCHHHH
Q 025371 74 GDNRAGIEGT--LHRISAIRSRKGAIVGLTCRVGRAVSG--HI----------DMVYDLL-HYGKSILFVGRPGVGKTTV 138 (254)
Q Consensus 74 ~~~~~~~~~~--~~Rv~~~~~~~g~~~~l~ir~~~~~~~--~~----------~~l~~~i-~~g~~~~i~G~~GsGKTTL 138 (254)
+..+..+.+. .+|++......|. ++++|....... .+ +.+...+ ..+..++|+||+||||||+
T Consensus 19 g~~~~~~~~~~~~~Rv~~~p~~~G~--~~~iR~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 19 GRIRLKLKGREIDLRVSTLPTIYGE--SVVLRILDKKNQILDLEKLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred ceEEEEECCcEEEEEEEEeecCCCC--EEEEEEeCCccCCCCHHHcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 4444455553 2899998888886 889988654321 11 2222233 3456899999999999999
Q ss_pred HHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCC-CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 139 MREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 139 l~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~-~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
++++...+++. +.+++++|++.|+... ... +..+ ...+.....++..+|+++||+|+++|+++..++..
T Consensus 97 l~all~~i~~~-~~~iitiEdp~E~~~~----~~~-----q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 97 LYSALSELNTP-EKNIITVEDPVEYQIP----GIN-----QVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred HHHHHhhhCCC-CCeEEEECCCceecCC----Cce-----EEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 99998887643 6789999999987532 111 1111 12345677899999999999999999999988888
Q ss_pred HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 218 CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 218 ~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+.+++++||.+++|.|++++.+++.|..
T Consensus 167 ~~~aa~tGh~v~tTlHa~~~~~ai~Rl~ 194 (264)
T cd01129 167 AVQAALTGHLVLSTLHTNDAPGAITRLL 194 (264)
T ss_pred HHHHHHcCCcEEEEeccCCHHHHHHHHH
Confidence 8999999999999999999999887764
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.82 E-value=4.2e-20 Score=167.84 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=102.3
Q ss_pred ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC------------------CCeEEEEcCCCccccC----
Q 025371 109 SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSNEIGGD---- 166 (254)
Q Consensus 109 ~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~------------------~~~i~~~~~~~ei~~~---- 166 (254)
...++.+++.+.+|+.++|+||+|||||||.|.|.|.++|.. |++|.|.+|..|+...
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIae 428 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE 428 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHH
Confidence 345788999999999999999999999999999999999863 3445555555444211
Q ss_pred ------CCCCcccccc------------------ccc----cCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-
Q 025371 167 ------GDIPHSAIGT------------------ARR----MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (254)
Q Consensus 167 ------~~~~~~~~~~------------------~~~----~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~- 217 (254)
.+.....+.. ... -..+|+||+||.++|||+--+|.++++|||-+++|...
T Consensus 429 NIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE 508 (580)
T COG4618 429 NIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGE 508 (580)
T ss_pred HHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHH
Confidence 0000000000 001 11359999999999999999999999999999998753
Q ss_pred ------HHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 218 ------CRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 218 ------~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
+..++.+|.++|+++|..++...+++-
T Consensus 509 ~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dki 541 (580)
T COG4618 509 AALAAAILAAKARGGTVVVIAHRPSALASVDKI 541 (580)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHHHHhhccee
Confidence 667788999999999999988877654
No 330
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.82 E-value=3.7e-20 Score=180.98 Aligned_cols=146 Identities=13% Similarity=0.137 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+.. ...+++++..+++|+.++|+|+||||||||++.|+|++.|+.|. ++.+++
T Consensus 476 ~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 476 INDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred EEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 46889988632 24688999999999999999999999999999999999987432 233333
Q ss_pred CCCccccC--------CCCCc---ccccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 159 TSNEIGGD--------GDIPH---SAIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 159 ~~~ei~~~--------~~~~~---~~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
|...+... ...+. ..+.. ...-..+|+||+||.++|||+..+|+++|
T Consensus 555 Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ili 634 (708)
T TIGR01193 555 QEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 634 (708)
T ss_pred cCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 33222110 00010 00000 01112369999999999999999999999
Q ss_pred EeCCCchHHHHHHHH----HHh-CCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHACRS----IAE-RGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~~~~----~~~-~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++++|...-.. +.+ .|.|+|+++|..+....+++
T Consensus 635 LDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~ 677 (708)
T TIGR01193 635 LDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDK 677 (708)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCE
Confidence 999999999876221 222 47899999999887776554
No 331
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=4.5e-20 Score=173.76 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=98.0
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEEcCCC---ccccC--
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSN---EIGGD-- 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~~~~~---ei~~~-- 166 (254)
.++++++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.. .+...
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 477888899999999999999999999999999999876321 122222221 00000
Q ss_pred -------CCC----------Cccc----c-------c-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 167 -------GDI----------PHSA----I-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 167 -------~~~----------~~~~----~-------~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
... .... . + ..+....+|+||+||+++|+++..+|++||+|||++++
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 000 0000 0 0 01223346999999999999999999999999999999
Q ss_pred HHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 214 EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 214 d~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|... +.++.+.|.++|+++|+.+....++++++.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~ 467 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILV 467 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEE
Confidence 9876 445556689999999998877777776554
No 332
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=5.8e-20 Score=166.67 Aligned_cols=146 Identities=19% Similarity=0.171 Sum_probs=105.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccc-----------c
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-----------G 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~-----------~ 165 (254)
+.+++++|+... ..+.+++.+++|++.+|+|.||+|||||+++|.|++.|+.|+ |.+-.....+. .
T Consensus 7 ~~~itK~f~~~~--And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~Ge-I~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 7 MRGITKRFPGVV--ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE-IRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EeccEEEcCCEE--ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcce-EEECCEEeccCCHHHHHHcCCcE
Confidence 457899998544 488999999999999999999999999999999999998543 33222111110 0
Q ss_pred C----CCCCcc----cc--------------------------------ccccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 166 D----GDIPHS----AI--------------------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 166 ~----~~~~~~----~~--------------------------------~~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
. ..++.. |+ .....+..+|-|++||+.|-.+|..+|++||
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 0 000000 00 0012334468999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+||||+-+.+.. +.++++.|++||++||-.+-...+++++
T Consensus 164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCee
Confidence 999999777654 5667788999999999966555555543
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=5.5e-20 Score=175.68 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=102.8
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE----------EEcC---------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDT--------- 159 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~----------~~~~--------- 159 (254)
.++.||+... ..++.+. .+++|++++|+||||||||||+++|+|+++|+.|. +. .+..
T Consensus 78 ~~~~~yg~~~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVNG-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD-YEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCCc-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc-ccCCCcHHHHHHHhCChHHHHHHHH
Confidence 4888887532 1366776 69999999999999999999999999999987443 32 0100
Q ss_pred ----CCccccC----CCCCcc---cc------------------------ccccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 160 ----SNEIGGD----GDIPHS---AI------------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 160 ----~~ei~~~----~~~~~~---~~------------------------~~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
...+.+. ...|.. .+ ...+....+|+|++||+++++++..+|+++
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0000000 000100 00 001334457999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|... +.++.+ |.++|+++|+.+....+.+.++
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999876 444455 9999999999888888777653
No 334
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.82 E-value=5.6e-20 Score=172.65 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=100.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc-CCCC-------------------eEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQK-------------------RVVI 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-~~~~-------------------~i~~ 156 (254)
+.+++++|+... .++++++.+.+|++++|+||||||||||+++|+|+.++ +.|. ++.+
T Consensus 263 ~~~l~~~~~~~~--il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 263 LNNGVVSYNDRP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred EeceEEEECCee--EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 456677765432 47889999999999999999999999999999998764 2221 1222
Q ss_pred EcCCCccccC-----------CCC---------Ccc---c-------cc--c---ccccCCCChhHHHHHHHHHHHccCC
Q 025371 157 VDTSNEIGGD-----------GDI---------PHS---A-------IG--T---ARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 157 ~~~~~ei~~~-----------~~~---------~~~---~-------~~--~---~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
+.+...+... ... ... . ++ . .+....+|+||+||+++++|+..+|
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 420 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2221100000 000 000 0 00 0 1123456999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCc-eEEEEEchhhHHHH-hCChhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGV-MLIGTAHGEWLENI-IKNPIL 246 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~-~vi~t~H~~~~~~~-~~~~~~ 246 (254)
++||+|||++++|+.. +.++++.|. ++|+++|+.+.... ++++++
T Consensus 421 ~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~ 474 (490)
T PRK10938 421 TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLE 474 (490)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE
Confidence 9999999999999876 334445554 69999999876654 455543
No 335
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=1.2e-19 Score=175.68 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~ei~~~--- 166 (254)
+.+++++++... ..++++++.+++|+.++|+||||||||||+++|+|++++..|. ++.++.+...+...
T Consensus 454 ~~nv~~~~~~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 454 FENIPLVTPNGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred EEeeEEECCCCC-eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHH
Confidence 457777764321 2588899999999999999999999999999999999876432 34555554322110
Q ss_pred --CCC---------Cc---ccccc-----------cc---------ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 167 --GDI---------PH---SAIGT-----------AR---------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 167 --~~~---------~~---~~~~~-----------~~---------~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
-.. +. ..... .+ ....+|+||+||+++|||+..+|+++|+|||+++
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 000 00 00000 00 1145899999999999999999999999999999
Q ss_pred HHHHHHH---H-HHhCCceEEEEEchhhHHHHhCC
Q 025371 213 AEAHACR---S-IAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 213 ld~~~~~---~-~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|..... + +.+.|.|+|+++|..+....+++
T Consensus 613 LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~ 647 (659)
T TIGR00954 613 VSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEY 647 (659)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCE
Confidence 9988732 2 23458999999999888766544
No 336
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.82 E-value=9e-20 Score=174.66 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=101.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.|. .+.++.
T Consensus 337 ~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 457888876422 2588899999999999999999999999999999999987432 122222
Q ss_pred CCCccccCC-----CC--Cc---cccc----------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGDG-----DI--PH---SAIG----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~~-----~~--~~---~~~~----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+...+.... .. +. ..+. .......+|+||+||.++|||+..+|+++|+
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222111000 00 00 0000 0011224699999999999999999999999
Q ss_pred eCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhC
Q 025371 207 DEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 207 DEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~ 242 (254)
|||++++|......+ ...+.|+|+++|..+....++
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d 537 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNAD 537 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCC
Confidence 999999998772222 134789999999988776543
No 337
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.2e-20 Score=168.40 Aligned_cols=147 Identities=13% Similarity=0.138 Sum_probs=107.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-----------cccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGG 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-----------ei~~ 165 (254)
+.+++++|.......++++++.+++||.++|+|++|||||||+..|+|.+.|+.|. +- .+..+ .+..
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~-i~-~~g~~~~~l~~~~~~e~i~v 416 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS-IT-LNGVEIASLDEQALRETISV 416 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCe-ee-ECCcChhhCChhhHHHHHhh
Confidence 56899999888777899999999999999999999999999999999999987543 22 21100 0100
Q ss_pred CCCCCcc-------cc-------------cccc-----------------c----cCCCChhHHHHHHHHHHHccCCCEE
Q 025371 166 DGDIPHS-------AI-------------GTAR-----------------R----MQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 166 ~~~~~~~-------~~-------------~~~~-----------------~----~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
..+.+|. |. ...+ . -..+|||++||.++||++.++.+++
T Consensus 417 l~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred hccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 0000000 00 0000 1 1124999999999999999999999
Q ss_pred EEeCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhCChh
Q 025371 205 IVDEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 205 ilDEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
++||||.++|+.+-+++ .-.|+|+|++||...-.+.+++-+
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 99999999998873322 235899999999987777777643
No 338
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=6.5e-20 Score=178.87 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=103.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
+.+++++|.......++++++.+++|+.++|+|+||||||||+++|+|+++|+.| .|. ++
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G-~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG-QVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEehhhCCHHHHHHhCeEE
Confidence 4688888864433468899999999999999999999999999999999998743 332 22
Q ss_pred cCCCccccC----------CCCCccccc------------------c----ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD----------GDIPHSAIG------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~~------------------~----~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+...+... .......+. . ......+|+||+||.++|||+..+|+++|
T Consensus 537 ~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ili 616 (694)
T TIGR01846 537 LQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI 616 (694)
T ss_pred ccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 222111100 000000000 0 01123469999999999999999999999
Q ss_pred EeCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++++|......+ ...+.|+|+++|..+....+++
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ 660 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDR 660 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCE
Confidence 9999999998762221 1357899999999887776543
No 339
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=8.6e-20 Score=168.04 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=106.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---------------- 160 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---------------- 160 (254)
+.+++++|+... .++.+++.+.+||+.+|+|.||+|||||+|.|+|.++|+.| .|.+-.+.
T Consensus 11 ~~~i~K~FggV~--AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCce--eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCCcEE
Confidence 457888887754 58999999999999999999999999999999999999844 33221110
Q ss_pred --CccccC-----------CCCCccccc-----------------------cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 161 --NEIGGD-----------GDIPHSAIG-----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 161 --~ei~~~-----------~~~~~~~~~-----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.|+... +..|...++ ....+..+|.+++|.+++|+|+..++++|
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 011000 011111000 11233446999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
||||||+.++... +++++++|.++|+++|..+-...+++++
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE
Confidence 9999999877654 6677889999999999966555555554
No 340
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.8e-20 Score=169.51 Aligned_cols=145 Identities=11% Similarity=0.095 Sum_probs=103.9
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEcC
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDT 159 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~~ 159 (254)
.+++++++... ..++++++.+++|+.++|+|+||||||||+++|+|+.+|+.|. ++.++.+
T Consensus 324 ~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 324 ENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred cceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 38899887754 4688999999999999999999999999999999999986332 2223333
Q ss_pred CCccccCC-----CCCcccc----------------------ccc----cccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 160 SNEIGGDG-----DIPHSAI----------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 160 ~~ei~~~~-----~~~~~~~----------------------~~~----~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
.+.+.... .+.+.+. +.. ..-.-+|+||.||+++|||+..+++++++||
T Consensus 403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 32221100 0000000 000 1111259999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 209 IGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
||+++|+++ +.++ .++.|+++++|........++.
T Consensus 483 pTA~LD~etE~~i~~~l~~l-~~~ktvl~itHrl~~~~~~D~I 524 (559)
T COG4988 483 PTAHLDAETEQIILQALQEL-AKQKTVLVITHRLEDAADADRI 524 (559)
T ss_pred CccCCCHhHHHHHHHHHHHH-HhCCeEEEEEcChHHHhcCCEE
Confidence 999999987 3333 3469999999998777766544
No 341
>PLN03073 ABC transporter F family; Provisional
Probab=99.81 E-value=1.4e-19 Score=176.05 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=106.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc---CcCCCCeEEEEcCCCc-----------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNE----------- 162 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~---~~~~~~~i~~~~~~~e----------- 162 (254)
+.+++++|+... .++++++.+.+|+.++|+|+|||||||||++|+|.. .|. +..|.++++...
T Consensus 180 i~nls~~y~~~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~-~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 180 MENFSISVGGRD--LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK-NCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred EceEEEEeCCCE--EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC-CCEEEEEeccCCCCCCCHHHHHH
Confidence 457888886544 589999999999999999999999999999999853 222 456665554210
Q ss_pred -------------cccCC--------------------CCCcccc------------------------------c----
Q 025371 163 -------------IGGDG--------------------DIPHSAI------------------------------G---- 175 (254)
Q Consensus 163 -------------i~~~~--------------------~~~~~~~------------------------------~---- 175 (254)
+.+.. ..+.... +
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 00000 0000000 0
Q ss_pred -cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH----HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 176 -TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 176 -~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~----~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
..+....+|+|++||++|+++|..+|++||+|||++++|......+ .+.|.++|+++|+......+++.++.
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 0123456799999999999999999999999999999999873332 34488999999998888777666543
No 342
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.81 E-value=1.1e-19 Score=173.73 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=102.1
Q ss_pred EEEEEEEECcee-ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~-~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
+.+++++|+... ...++++++.+++|+.++|+|+||||||||+++|+|+++|..|. .+.++
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~ 419 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALV 419 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEE
Confidence 557888876421 23588899999999999999999999999999999999986432 12222
Q ss_pred cCCCccccCC-----CC--Cc---ccc------------------cc----ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGDG-----DI--PH---SAI------------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~~-----~~--~~---~~~------------------~~----~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
++...+.... .+ +. ..+ +. ......+|+||+||.++|||+..+|+++|
T Consensus 420 ~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili 499 (576)
T TIGR02204 420 PQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILL 499 (576)
T ss_pred ccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence 2222111000 00 00 000 00 01122469999999999999999999999
Q ss_pred EeCCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++++|......+ . ..+.|+|+++|..+....+++
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~ 543 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADR 543 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 9999999998762221 1 247999999999887766543
No 343
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.81 E-value=1e-19 Score=173.30 Aligned_cols=145 Identities=12% Similarity=0.159 Sum_probs=100.7
Q ss_pred EEEEEEEECce---eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-Cc---------c
Q 025371 97 IVGLTCRVGRA---VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NE---------I 163 (254)
Q Consensus 97 ~~~l~ir~~~~---~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-~e---------i 163 (254)
+.+++++|+.. ....++++++.+++|+.++|+||||||||||++.|+|+++|+.| .|.+.+.. .+ +
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i 418 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG-EILLDGAAVSADSRDDYRDLF 418 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhhC
Confidence 45888888643 11257889999999999999999999999999999999998744 33221100 00 0
Q ss_pred ccC--------CCC-----Ccc---cc-------ccc----------cccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 164 GGD--------GDI-----PHS---AI-------GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 164 ~~~--------~~~-----~~~---~~-------~~~----------~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
.+. ... +.. .. +.. .....+|+||+||.+++||+..+|+++|+|||+
T Consensus 419 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t 498 (555)
T TIGR01194 419 SAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA 498 (555)
T ss_pred cEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 000 000 000 00 000 011347999999999999999999999999999
Q ss_pred chHHHHHHH--------HHHhCCceEEEEEchhhHHHHhC
Q 025371 211 TEAEAHACR--------SIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 211 ~~ld~~~~~--------~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
+++|..... .+...|+|+|+++|..+..+.++
T Consensus 499 s~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD 538 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence 999987621 12245899999999987766544
No 344
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.2e-20 Score=146.36 Aligned_cols=138 Identities=21% Similarity=0.277 Sum_probs=101.9
Q ss_pred ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC----------c--------cccCC---
Q 025371 109 SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------E--------IGGDG--- 167 (254)
Q Consensus 109 ~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~----------e--------i~~~~--- 167 (254)
...++++++.++.||++++-||+|||||||||+|.+.+.++.|. |.+--+.. + +++..
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~-I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ-ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce-EEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 34678899999999999999999999999999999999998443 33221111 1 11100
Q ss_pred -CCCcc---cc--------cc------------ccc-----------cCCCChhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 168 -DIPHS---AI--------GT------------ARR-----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 168 -~~~~~---~~--------~~------------~~~-----------~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
-+|.. ++ +. ..+ ....|||+|||+-|+|.+..+..++++|||++.
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTas 182 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccc
Confidence 00110 00 00 011 123499999999999999999999999999999
Q ss_pred HHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 213 AEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 213 ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+.. +.+.+..|..++.+.|+.++.+.+.++.+.
T Consensus 183 LDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~ 224 (235)
T COG4778 183 LDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLD 224 (235)
T ss_pred ccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheee
Confidence 99764 556677899999999999999999887654
No 345
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.81 E-value=1.6e-19 Score=171.66 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=100.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+... ..++++++.+++|+.++|+||||||||||++.|+|+++|+.|. ++.++.
T Consensus 325 ~~~v~f~y~~~~-~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 403 (547)
T PRK10522 325 LRNVTFAYQDNG-FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVF 403 (547)
T ss_pred EEEEEEEeCCCC-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEe
Confidence 468888886432 2588999999999999999999999999999999999886432 122222
Q ss_pred CCCccccC--C-C---CCcccc---------cccc-------ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH
Q 025371 159 TSNEIGGD--G-D---IPHSAI---------GTAR-------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH 216 (254)
Q Consensus 159 ~~~ei~~~--~-~---~~~~~~---------~~~~-------~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~ 216 (254)
+...+... . . ...... .... .-..+|+||+||.++|||+..+|+++|+|||++++|..
T Consensus 404 q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~ 483 (547)
T PRK10522 404 TDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483 (547)
T ss_pred cChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 22111100 0 0 000000 0000 01357999999999999999999999999999999987
Q ss_pred HHH-------HHH-hCCceEEEEEchhhHHHHhC
Q 025371 217 ACR-------SIA-ERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 217 ~~~-------~~~-~~G~~vi~t~H~~~~~~~~~ 242 (254)
... +.. +.|.|+|+++|..+....++
T Consensus 484 ~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 484 FRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 622 121 24889999999987766544
No 346
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=9.6e-20 Score=180.33 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=103.6
Q ss_pred EEEEEEEECcee-ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--Ccccc------CC
Q 025371 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--NEIGG------DG 167 (254)
Q Consensus 97 ~~~l~ir~~~~~-~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~--~ei~~------~~ 167 (254)
..++.++|+... ...++.+++.+++|+.++|+||+||||||++..|.+++.|+.|. +++|.. .++.. .+
T Consensus 353 f~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~--V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 353 FRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE--VLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred EEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce--EEEcCccchhcchHHHHhhcC
Confidence 458888887653 35688889999999999999999999999999999999998543 333211 00000 00
Q ss_pred CCCcc----------c--ccc--------------------------------ccccCCCChhHHHHHHHHHHHccCCCE
Q 025371 168 DIPHS----------A--IGT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 168 ~~~~~----------~--~~~--------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
.+.+. + .+. ..+-..+|||||||++||||+..+|++
T Consensus 431 lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 431 LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 00000 0 000 011123699999999999999999999
Q ss_pred EEEeCCCchHHHHH------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 204 IIVDEIGTEAEAHA------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 204 iilDEp~~~ld~~~------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
|+|||||++||+.+ +.+....|.|.|+++|..+.....+
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD 555 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNAD 555 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccC
Confidence 99999999999876 3333456999999999988776643
No 347
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.81 E-value=1.8e-19 Score=188.69 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=105.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE------------------EEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV------------------IVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~------------------~~~ 158 (254)
+.++++++.......++++++.+.+|++++|+||||||||||+++|+|+++|+.| .+. ++.
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG-~I~i~G~dI~~~~~~~r~~IG~~p 1009 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG-TVLVGGKDIETNLDAVRQSLGMCP 1009 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCce-EEEECCEECcchHHHHhhcEEEEe
Confidence 4577777742112257889999999999999999999999999999999988743 222 222
Q ss_pred CCCccccC-------------CCCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 159 TSNEIGGD-------------GDIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 159 ~~~ei~~~-------------~~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+...+... ...+... . + ..+....+|+||+||+++++|+..+|++||+|||+
T Consensus 1010 Q~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPT 1089 (2272)
T TIGR01257 1010 QHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089 (2272)
T ss_pred cCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 21110000 0000000 0 0 01233456999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+++|+.+ +.++ ..|.++|+|+|+.+.++.++++++.
T Consensus 1090 SGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~i 1132 (2272)
T TIGR01257 1090 SGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAI 1132 (2272)
T ss_pred cCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEE
Confidence 9999876 3344 3589999999998888887776643
No 348
>PLN03211 ABC transporter G-25; Provisional
Probab=99.80 E-value=1.4e-19 Score=174.96 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=99.8
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-CCC---------------eEEEEcCCC
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQK---------------RVVIVDTSN 161 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-~~~---------------~i~~~~~~~ 161 (254)
.+++.++..+. .+++++..+++|+.++|+||||||||||+++|+|..++. ..+ ++.++.+..
T Consensus 72 ~~l~~~~~~~~--iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 72 SDETRQIQERT--ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred ccccccCCCCe--eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 35566665433 588999999999999999999999999999999998763 112 233333322
Q ss_pred ccccC------------CCCCcc----c----c-------cc---------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 162 EIGGD------------GDIPHS----A----I-------GT---------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 162 ei~~~------------~~~~~~----~----~-------~~---------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.+... ...+.. . . +. ......+|+||+||+.++++|..+|++|+
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 11100 000100 0 0 00 00123479999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhh--HHHHhCCh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW--LENIIKNP 244 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~--~~~~~~~~ 244 (254)
+|||++++|... +.++++.|.|+|+|+|..+ +.+.+++-
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i 277 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV 277 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE
Confidence 999999999876 4445557999999999975 34444433
No 349
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=145.96 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=94.6
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc-----ccc-CCCCCcc
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-----IGG-DGDIPHS 172 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e-----i~~-~~~~~~~ 172 (254)
+++++.+... .+..+++.+.+|+.+.|.||||||||||||+|+|+..|+ .++|.+-+.... ... ...+.|.
T Consensus 7 ~L~~~R~e~~--lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~-~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 7 NLSCERGERT--LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD-AGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred hhhhccCcce--eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC-CCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 4555444333 377888899999999999999999999999999999997 444444322110 000 0000111
Q ss_pred c--------------------------c-----------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHH
Q 025371 173 A--------------------------I-----------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (254)
Q Consensus 173 ~--------------------------~-----------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~ 215 (254)
+ + .....+..+|.|||+|+++|+.....+++.|+|||++++|.
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk 163 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH
Confidence 0 0 00123345699999999999999999999999999999998
Q ss_pred HH-------HHHHHhCCceEEEEEchhh
Q 025371 216 HA-------CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 216 ~~-------~~~~~~~G~~vi~t~H~~~ 236 (254)
.. +..-+++|-.|+.|||..-
T Consensus 164 ~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 164 EGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 76 2233467888999999754
No 350
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=5.9e-20 Score=145.72 Aligned_cols=130 Identities=14% Similarity=0.208 Sum_probs=92.6
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC----------CccccCC------------
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS----------NEIGGDG------------ 167 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~----------~ei~~~~------------ 167 (254)
..++.+++.+.+|+.++|+||+|||||||+|+++.+++|+.|. +.+-.++ .++.|+.
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~-l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGT-LLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCce-EEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 3478899999999999999999999999999999999998543 2221110 0111110
Q ss_pred --CCCcccc---------------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------
Q 025371 168 --DIPHSAI---------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA------- 217 (254)
Q Consensus 168 --~~~~~~~---------------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~------- 217 (254)
.+|.... ...++...+|||++|+.++.|-|..-|++|++|||++.+|...
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m 175 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence 0010000 0012334469999999999999999999999999999999865
Q ss_pred HHHH-HhCCceEEEEEchhhHHHH
Q 025371 218 CRSI-AERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 218 ~~~~-~~~G~~vi~t~H~~~~~~~ 240 (254)
+... .++...++-+||+.+-.-.
T Consensus 176 i~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 176 IHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred HHHHhhhhceEEEEEecChHHHhh
Confidence 3333 3678899999999765333
No 351
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=5.4e-20 Score=149.17 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=104.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~---------- 166 (254)
+.+++++++... .++++++.+.+|+.-+|+||||+||||+|.+|+|..+|+. +++.+.+ ..++...
T Consensus 8 ~~~vsVsF~GF~--Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~-G~v~f~g-~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 8 LDGVSVSFGGFK--ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE-GEVLFDG-DTDLTKLPEHRIARAGI 83 (249)
T ss_pred EeceEEEEccee--eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc-ceEEEcC-chhhccCCHHHHHHhcc
Confidence 457888887755 4889999999999999999999999999999999999873 3444333 1111100
Q ss_pred CCCCc-ccccc-----------------------------------------------ccccCCCChhHHHHHHHHHHHc
Q 025371 167 GDIPH-SAIGT-----------------------------------------------ARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 167 ~~~~~-~~~~~-----------------------------------------------~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+...+ +.++. .+....+|+||+|...|...+.
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 00000 00000 0112245999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHH------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|++|++|||.+++.... +..-....|+++.+.|+..+...+.+++.
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VT 217 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVT 217 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeE
Confidence 9999999999988654332 22323457899999999999998877653
No 352
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.4e-19 Score=147.26 Aligned_cols=155 Identities=19% Similarity=0.125 Sum_probs=107.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC-CCeEEEEc-----------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVD----------------- 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~-~~~i~~~~----------------- 158 (254)
+.++..+...+ ...++.++..+++|++.+|+||||||||||.++|+|.-.... .+.|.+-.
T Consensus 6 I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gif 84 (251)
T COG0396 6 IKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIF 84 (251)
T ss_pred EeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCE
Confidence 45666666543 234888999999999999999999999999999999865321 22232211
Q ss_pred ----CCCccccCC----------C-CCc----cccc----------------cccccC-CCChhHHHHHHHHHHHccCCC
Q 025371 159 ----TSNEIGGDG----------D-IPH----SAIG----------------TARRMQ-VPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 159 ----~~~ei~~~~----------~-~~~----~~~~----------------~~~~~~-~~s~g~~~~~~l~~al~~~P~ 202 (254)
.+.++.... . ... ..+. ..+.+. -+|||++.|..+..++.++|+
T Consensus 85 LafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePk 164 (251)
T COG0396 85 LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPK 164 (251)
T ss_pred EeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCC
Confidence 122222110 0 000 0000 001111 149999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhhhhhcc
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLVCS 252 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~~l~~g 252 (254)
+.|||||.+++|..+ +.++.+.|.+++++||-..+.+.+.-...+.|..|
T Consensus 165 l~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~G 221 (251)
T COG0396 165 LAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDG 221 (251)
T ss_pred EEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECC
Confidence 999999999999987 44556779999999999999998865555555544
No 353
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.3e-19 Score=163.31 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
..++.+.++++. ..++.+++.|++|+.++|+|+|||||||++|+|.++... .++|. ++
T Consensus 354 F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~--sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 354 FDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY--SGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EEeeEEEeCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc--CCcEEECCeeHhhhChHHhhhheeEe
Confidence 357888887654 358899999999999999999999999999999999984 33332 22
Q ss_pred cCCCccccC--------C--CCCcccc-cc---------------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD--------G--DIPHSAI-GT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~--------~--~~~~~~~-~~---------------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+|...+.-+ + ......+ .. -.+-..+||||+||++++||+..+|++++
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 222111100 0 0000000 00 01223459999999999999999999999
Q ss_pred EeCCCchHHHHHHHH----HH--hCCceEEEEEchhhHHHHhCCh
Q 025371 206 VDEIGTEAEAHACRS----IA--ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 206 lDEp~~~ld~~~~~~----~~--~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
+||||+.+|..+-.+ +. ..|.|+|++.|..+....+++-
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI 555 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKI 555 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEE
Confidence 999999999887222 22 3588999999999998888654
No 354
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=168.82 Aligned_cols=150 Identities=13% Similarity=0.214 Sum_probs=108.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-------CeEEEEcCCCc-cccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE-IGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-------~~i~~~~~~~e-i~~~-- 166 (254)
+.++++.|... ...++.+++.+.+|+.++|+||||+|||||||.|+|.+.+..| -++.+++|... +...
T Consensus 324 ~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 324 FENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred EeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCc
Confidence 34566666443 1247788899999999999999999999999999998877633 23456655431 1100
Q ss_pred ------CCCCc---ccc------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH---H
Q 025371 167 ------GDIPH---SAI------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI---A 222 (254)
Q Consensus 167 ------~~~~~---~~~------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~---~ 222 (254)
...+. ..+ ...+.+..+|||++.|+.++..+..+|.+|||||||+.+|.+++..+ .
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL 482 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 00110 000 00245567899999999999999999999999999999999884443 2
Q ss_pred -hCCceEEEEEchhhHHHHhCChhhh
Q 025371 223 -ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 223 -~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+-.-+||+++|+..+.+.+..+++.
T Consensus 483 ~~f~Gtvl~VSHDr~Fl~~va~~i~~ 508 (530)
T COG0488 483 LDFEGTVLLVSHDRYFLDRVATRIWL 508 (530)
T ss_pred HhCCCeEEEEeCCHHHHHhhcceEEE
Confidence 3356999999999999998876654
No 355
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.6e-19 Score=143.02 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=102.8
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC---Cc------------
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---NE------------ 162 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~---~e------------ 162 (254)
.+++.-|+... .-.++++.+.+||.++|+|.+||||||||++|++.+.|+.+ .+.+.... .+
T Consensus 10 ~~lsk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~msEaeRR~L 86 (258)
T COG4107 10 SGLSKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYTMSEAERRRL 86 (258)
T ss_pred hhhhhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhhhchHHHHHH
Confidence 35555555433 35678888999999999999999999999999999999743 34333211 11
Q ss_pred ----cccCCCCCcc----------cccc--------------------c-----------cccCCCChhHHHHHHHHHHH
Q 025371 163 ----IGGDGDIPHS----------AIGT--------------------A-----------RRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 163 ----i~~~~~~~~~----------~~~~--------------------~-----------~~~~~~s~g~~~~~~l~~al 197 (254)
..+..+.|.. ++++ . .....+|+|++||.-||+.|
T Consensus 87 ~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnL 166 (258)
T COG4107 87 LRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHh
Confidence 1111111111 0100 0 11123499999999999999
Q ss_pred ccCCCEEEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 198 NHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
...|++++||||+.++|... ++.+. +-|..+++++|+..++..+.++.|-
T Consensus 167 Vt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmv 224 (258)
T COG4107 167 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMV 224 (258)
T ss_pred ccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhccee
Confidence 99999999999999999765 22332 4588999999999999988776553
No 356
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.79 E-value=6.8e-19 Score=145.14 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=102.0
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccc-ccc--CCCChhH
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRM--QVPEPSL 187 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~-~~~--~~~s~g~ 187 (254)
..+.++..++.|++++|+||||||||||+++|++++++ ..++++++++.|+.. ++.+.... .+. ...+...
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~----~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQL----PHPNWVRLVTRPGNVEGSGEV 87 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCC----CCCCEEEEEEecCCCCCCCcc
Confidence 46678888999999999999999999999999999987 456788888877743 22221110 011 1123345
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCce-EEEEEchhhHHHHhCChhhhhhh
Q 025371 188 QHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKNPILSDLV 250 (254)
Q Consensus 188 ~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~-vi~t~H~~~~~~~~~~~~~~~l~ 250 (254)
....++..+++++||+++++|.++.+ +..+.++.++||. +++|.|+.++.+++.|.......
T Consensus 88 ~~~~~l~~~lR~~pd~i~igEir~~e-a~~~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~ 150 (186)
T cd01130 88 TMADLLRSALRMRPDRIIVGEVRGGE-ALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPSN 150 (186)
T ss_pred CHHHHHHHHhccCCCEEEEEccCcHH-HHHHHHHHhcCCCCceeeecCCCHHHHHHHHHHHHhh
Confidence 56778889999999999999999974 5667778899997 99999999999999877655443
No 357
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.79 E-value=7.6e-19 Score=169.98 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=104.0
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------------
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------- 152 (254)
+.+++++|... ....++++++.+++|+.++|+||||||||||+++|+|+++++.|.
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 86 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRRE 86 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhc
Confidence 46888888531 123588899999999999999999999999999999999886332
Q ss_pred eEEEEcCCCccccCCC-------------CCccc----cc-----------cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 153 RVVIVDTSNEIGGDGD-------------IPHSA----IG-----------TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 153 ~i~~~~~~~ei~~~~~-------------~~~~~----~~-----------~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+.++.+...+..... .+... .. .......+|+|++||+++++++..+|++|
T Consensus 87 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lL 166 (648)
T PRK10535 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVI 166 (648)
T ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222222111100000 00000 00 00223346999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|..+ +.++.+.|.++++++|..+..+. +++++
T Consensus 167 llDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~-~d~i~ 214 (648)
T PRK10535 167 LADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ-AERVI 214 (648)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHh-CCEEE
Confidence 9999999999876 33444568999999999887775 45443
No 358
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=153.60 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=95.1
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc---CC--Cc----cccC-C------------
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD---TS--NE----IGGD-G------------ 167 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~---~~--~e----i~~~-~------------ 167 (254)
....++++.+++|++++++||||+||||++|+|+|++.|+.| ++-+.. .. .+ +.+. +
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 467889999999999999999999999999999999999844 332211 00 00 0000 0
Q ss_pred ----------CCCccccc---------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---HH
Q 025371 168 ----------DIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR 219 (254)
Q Consensus 168 ----------~~~~~~~~---------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---~~ 219 (254)
.+|...+. ...++..+|.||++|+.++++|.++|+++++||||-++|..+ ++
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 00000000 012334469999999999999999999999999999999865 33
Q ss_pred HH----H-hCCceEEEEEchhhHHHHhCChhh
Q 025371 220 SI----A-ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 220 ~~----~-~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++ . +.+.||+.|||..+=...++++++
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 32 2 348999999999554555555554
No 359
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.79 E-value=3e-19 Score=159.42 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=54.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 181 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|+||+||+++++|+..+|+++|+|||++++|... +.++.+ .|.|+|+++|+.+....++++++
T Consensus 99 ~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~ 172 (325)
T TIGR01187 99 HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172 (325)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3469999999999999999999999999999999876 334433 48999999999877666666654
No 360
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.79 E-value=7.7e-19 Score=164.75 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=106.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-------CeEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-------~~i~~~~~~~ei~~~--- 166 (254)
+.+++++.+... ..++.++..+++|+.++|.|+||||||||+|+|+|++|...| ..+.+++|.+.++..
T Consensus 395 ~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 395 LENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLR 473 (604)
T ss_pred EeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHH
Confidence 457777665533 347788888999999999999999999999999999986422 234566665554322
Q ss_pred --CCCCccc--ccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---
Q 025371 167 --GDIPHSA--IGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (254)
Q Consensus 167 --~~~~~~~--~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--- 217 (254)
-.+|+.. +.. .+--.++|+|+|||+++||.+.++|+++++||.++++|...
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~ 553 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR 553 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHH
Confidence 0112111 100 01223569999999999999999999999999999999876
Q ss_pred HHH-HHh--CCceEEEEEchhhHHHHhCC
Q 025371 218 CRS-IAE--RGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 218 ~~~-~~~--~G~~vi~t~H~~~~~~~~~~ 243 (254)
+.+ +.+ .+.++|.+.|...+....++
T Consensus 554 l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 554 LYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred HHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 223 233 48999999999887776654
No 361
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=5.3e-19 Score=183.13 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=102.5
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC--------------------------
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-------------------------- 149 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-------------------------- 149 (254)
..+++++|+.. ....++++++.+++|+.++|+||||||||||++.|.|++.|.
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 46899999642 224689999999999999999999999999999999999972
Q ss_pred ---------------------------CCCeEEE-------------------EcCCCccccC--------C--CCCccc
Q 025371 150 ---------------------------FQKRVVI-------------------VDTSNEIGGD--------G--DIPHSA 173 (254)
Q Consensus 150 ---------------------------~~~~i~~-------------------~~~~~ei~~~--------~--~~~~~~ 173 (254)
..+.|.+ +.|...+... + ......
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence 1222221 1221111000 0 000000
Q ss_pred cc------------------cc----cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHH-h
Q 025371 174 IG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-E 223 (254)
Q Consensus 174 ~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~-~ 223 (254)
+. .. .+-..+||||+||.+|||||..+|++||||||++.+|... +.++. .
T Consensus 1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 00 00 1112369999999999999999999999999999999876 22332 2
Q ss_pred CCceEEEEEchhhHHHHhCCh
Q 025371 224 RGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 224 ~G~~vi~t~H~~~~~~~~~~~ 244 (254)
.+.|+|+++|..+..+.+++-
T Consensus 1408 ~~~TvIiIaHRlsti~~aD~I 1428 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIKRSDKI 1428 (1466)
T ss_pred CCCEEEEEechHHHHHhCCEE
Confidence 488999999998877776543
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.78 E-value=1.3e-18 Score=181.15 Aligned_cols=148 Identities=10% Similarity=0.093 Sum_probs=104.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..+++++|.......++++++.+++|+.++|+|+||||||||+++|.|++.|+.|. ++.+++
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVp 1316 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEEC
Confidence 46899999654344689999999999999999999999999999999999987432 122233
Q ss_pred CCCccccC---------CCCCccccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---------GDIPHSAIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
|.+.+... .......+. .. ..-..+|+||+||.++|||+..+|++||+|
T Consensus 1317 Qdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD 1396 (1495)
T PLN03232 1317 QSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396 (1495)
T ss_pred CCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 32221110 000000000 00 111246999999999999999999999999
Q ss_pred CCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCCh
Q 025371 208 EIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 208 Ep~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
||++++|... +.+.. ..+.|+|+++|..+....+++-
T Consensus 1397 EATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrI 1439 (1495)
T PLN03232 1397 EATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKI 1439 (1495)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEE
Confidence 9999999876 22221 2478999999998777766543
No 363
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=135.14 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=97.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC--CeEEEEcCCC--------ccc--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KRVVIVDTSN--------EIG-- 164 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~--~~i~~~~~~~--------ei~-- 164 (254)
+++++++.+.... +..++..|.+|+++-++||+|||||||+.-+.|.+.+.+. +++..-++.- .++
T Consensus 5 l~nvsl~l~g~cL--La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiL 82 (213)
T COG4136 5 LKNVSLRLPGSCL--LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL 82 (213)
T ss_pred eeeeeecCCCceE--EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeee
Confidence 4577777665543 6778899999999999999999999999999999987531 2222211110 000
Q ss_pred c-C-CCCCcccccc--------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 165 G-D-GDIPHSAIGT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 165 ~-~-~~~~~~~~~~--------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+ + -.+||.+++. .+....+||||+.|+++.|+|...|+.+++|||+
T Consensus 83 FQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF 162 (213)
T COG4136 83 FQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162 (213)
T ss_pred ecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch
Confidence 0 0 1123332211 0122345999999999999999999999999999
Q ss_pred chHHHHH--------HHHHHhCCceEEEEEchhh
Q 025371 211 TEAEAHA--------CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 211 ~~ld~~~--------~~~~~~~G~~vi~t~H~~~ 236 (254)
+.+|... +.++...|...+.+||+..
T Consensus 163 S~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999764 4455677999999999843
No 364
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.78 E-value=2.7e-18 Score=142.94 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=91.0
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
..++|+|||||||||++++|++.+++..++++++++++.|+.... . .....+..+.........+++++++++||
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~----~-~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES----K-RSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC----c-cceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 368999999999999999999998865567889999887753211 1 00111222222334466789999999999
Q ss_pred EEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 203 VIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 203 viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+|++||+++......+.+++++||.+++|+|+.++.++++|-.
T Consensus 77 ~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTIDRII 119 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHHHHhHHH
Confidence 9999999998877778888899999999999999888876654
No 365
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.78 E-value=1.1e-18 Score=166.59 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=100.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------~ 157 (254)
..+++++|+... ..++++++.+++|+.++|+|||||||||+++.|.+++.++.| .|.. +
T Consensus 331 f~~vsf~y~~~~-~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G-~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 331 FENVSFSYPGKK-PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG-EILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEcCCCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCEehhhcCHHHHHHhccEE
Confidence 458888887421 248899999999999999999999999999999999998643 3333 1
Q ss_pred cCCCccccC-------CCCCc---ccc------------------ccc----cccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD-------GDIPH---SAI------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~-------~~~~~---~~~------------------~~~----~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+|...+... ...+. ..+ +.. .+-..+|+||+||.++|||+..+|+++|
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111110000 00000 000 000 1112369999999999999999999999
Q ss_pred EeCCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCC
Q 025371 206 VDEIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 206 lDEp~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~ 243 (254)
+|||++.+|..+ +.+.. ..+.|+++++|..+....+++
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~ 532 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADR 532 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCE
Confidence 999999999876 22221 256788889999877776443
No 366
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=148.64 Aligned_cols=129 Identities=18% Similarity=0.192 Sum_probs=89.2
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-----EcCC---------CccccC----CCCCcccccc--
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----VDTS---------NEIGGD----GDIPHSAIGT-- 176 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-----~~~~---------~ei~~~----~~~~~~~~~~-- 176 (254)
+..+...+++|.|++|||||||+|+|+|++.|+.| +|.. .+.. ..++|. ..+||..+..
T Consensus 19 ~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG-~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL 97 (352)
T COG4148 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNL 97 (352)
T ss_pred ccCCCCceEEEecCCCCChhhHHHHHhccCCcccc-EEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecch
Confidence 33444478999999999999999999999999743 2221 1111 112211 1233332210
Q ss_pred -------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-
Q 025371 177 -------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE- 223 (254)
Q Consensus 177 -------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~- 223 (254)
.+....+|||++||++|.|||..+|++|+||||.+.+|..- ++++.+
T Consensus 98 ~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e 177 (352)
T COG4148 98 RYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE 177 (352)
T ss_pred hhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh
Confidence 13334569999999999999999999999999999988543 555554
Q ss_pred CCceEEEEEchhhHHHHhCChhh
Q 025371 224 RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 224 ~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+.+++++|+.+....+.++++
T Consensus 178 ~~IPIlYVSHS~~Ev~RLAd~vV 200 (352)
T COG4148 178 INIPILYVSHSLDEVLRLADRVV 200 (352)
T ss_pred cCCCEEEEecCHHHHHhhhheEE
Confidence 47899999999766665555543
No 367
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=1.1e-18 Score=180.90 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=102.5
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----------Cccc
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIG 164 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----------~ei~ 164 (254)
+.+++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|++.|+.| .|.+.+.. ..++
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~i~~g~~i~~~~~~~lr~~Ig 463 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG-DIIINDSHNLKDINLKWWRSKIG 463 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC-eEEEeCCcchhhCCHHHHHHhcc
Confidence 46888888642 12368899999999999999999999999999999999998744 33331210 0011
Q ss_pred cCCC--------------CCc---------------------------------------------------------cc
Q 025371 165 GDGD--------------IPH---------------------------------------------------------SA 173 (254)
Q Consensus 165 ~~~~--------------~~~---------------------------------------------------------~~ 173 (254)
+..+ +.. ..
T Consensus 464 ~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 543 (1466)
T PTZ00265 464 VVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQT 543 (1466)
T ss_pred EecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccccc
Confidence 1000 000 00
Q ss_pred c------------c--c-------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HH
Q 025371 174 I------------G--T-------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CR 219 (254)
Q Consensus 174 ~------------~--~-------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~ 219 (254)
. + . ......+|+||+||++||||+..+|++||||||++++|... +.
T Consensus 544 ~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~ 623 (1466)
T PTZ00265 544 IKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623 (1466)
T ss_pred CCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 0 0 0 01123469999999999999999999999999999999876 33
Q ss_pred HHHh-CCceEEEEEchhhHHHHhC
Q 025371 220 SIAE-RGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 220 ~~~~-~G~~vi~t~H~~~~~~~~~ 242 (254)
++.. .|.|+|+++|..+..+.++
T Consensus 624 ~~~~~~g~TvIiIsHrls~i~~aD 647 (1466)
T PTZ00265 624 NLKGNENRITIIIAHRLSTIRYAN 647 (1466)
T ss_pred HHhhcCCCEEEEEeCCHHHHHhCC
Confidence 3433 4889999999988776443
No 368
>PLN03130 ABC transporter C family member; Provisional
Probab=99.77 E-value=1.7e-18 Score=180.86 Aligned_cols=148 Identities=10% Similarity=0.103 Sum_probs=104.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..+++++|.......++++++.+++|+.++|+|+||||||||+++|.|++.|+.|. ++.+++
T Consensus 1240 f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVp 1319 (1622)
T PLN03130 1240 FEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIP 1319 (1622)
T ss_pred EEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEEC
Confidence 46899999654344689999999999999999999999999999999999987432 122233
Q ss_pred CCCccccC---------CCCCcccc------------------cc----ccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---------GDIPHSAI------------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~------------------~~----~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
|.+.+... .......+ +. ...-..+|+||+|+.++|||+..+|++||||
T Consensus 1320 Qdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1320 QAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred CCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 32221110 00000000 00 0111246999999999999999999999999
Q ss_pred CCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCCh
Q 025371 208 EIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 208 Ep~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
||++++|... +.+.. ..+.|+|+++|..+....+++-
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrI 1442 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 1442 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEE
Confidence 9999999876 22221 2478999999998877766443
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=4.2e-18 Score=144.61 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=54.2
Q ss_pred cCCCChhHHHHHHHHHHHccCC--CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~P--~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
...+|+|++||+++++++..+| ++||+|||++++|... +.++.+.|.++|+++|+.+... ++++++
T Consensus 135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~ 209 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVI 209 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEE
Confidence 3457999999999999999998 5999999999999875 4444567899999999988765 555554
No 370
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=3.9e-18 Score=177.63 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=105.1
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------eEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------~i~~~~~~~ei~~~--- 166 (254)
+.++++++... ....++++++.+++|+.++|+||+|||||||+++|+|++++..|+ .+.++.|..-+...
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIr 696 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVR 696 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHH
Confidence 45777877542 123588999999999999999999999999999999999987543 45566654333211
Q ss_pred ------CCCCcccc------------------ccc----cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHH
Q 025371 167 ------GDIPHSAI------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218 (254)
Q Consensus 167 ------~~~~~~~~------------------~~~----~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~ 218 (254)
........ +.. .+-..+||||+||+++|||+..+|+++|+|||++++|....
T Consensus 697 eNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~ 776 (1495)
T PLN03232 697 ENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 (1495)
T ss_pred HHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 00000000 000 11224699999999999999999999999999999998762
Q ss_pred H----HHH---hCCceEEEEEchhhHHHHhCC
Q 025371 219 R----SIA---ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 219 ~----~~~---~~G~~vi~t~H~~~~~~~~~~ 243 (254)
. ++. ..|.|+|++||..+....+++
T Consensus 777 ~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~ 808 (1495)
T PLN03232 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDR 808 (1495)
T ss_pred HHHHHHHhhhhhcCCEEEEEECChhhHHhCCE
Confidence 2 222 257899999999887666543
No 371
>PTZ00243 ABC transporter; Provisional
Probab=99.76 E-value=3.5e-18 Score=178.18 Aligned_cols=148 Identities=13% Similarity=0.121 Sum_probs=104.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..+++++|....+..++++++.|++|+.++|+|+||||||||+++|.|++.++.|. ++.+++
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence 46889998654444689999999999999999999999999999999999987432 122233
Q ss_pred CCCccccC---CCC-Cc-----ccc-------c-----------cc----cccCCCChhHHHHHHHHHHHccC-CCEEEE
Q 025371 159 TSNEIGGD---GDI-PH-----SAI-------G-----------TA----RRMQVPEPSLQHKVMIEAVENHM-PEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~---~~~-~~-----~~~-------~-----------~~----~~~~~~s~g~~~~~~l~~al~~~-P~viil 206 (254)
|...+... .++ +. ..+ + .. ..-..+|+||+|+.+||||+..+ |++|||
T Consensus 1391 Qdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlL 1470 (1560)
T PTZ00243 1391 QDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILM 1470 (1560)
T ss_pred CCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 32222110 000 00 000 0 00 01124699999999999999996 899999
Q ss_pred eCCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCCh
Q 025371 207 DEIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 207 DEp~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
|||++++|... +.+.. -.++|+|+++|..+....+++-
T Consensus 1471 DEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrI 1514 (1560)
T PTZ00243 1471 DEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKI 1514 (1560)
T ss_pred eCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEE
Confidence 99999999876 22221 2478999999998877776553
No 372
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.4e-18 Score=156.63 Aligned_cols=147 Identities=16% Similarity=0.176 Sum_probs=98.2
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhc---cCcCCCCeEEEEc----------------
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV---LSDEFQKRVVIVD---------------- 158 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~---~~~~~~~~i~~~~---------------- 158 (254)
.++++.++.+.. ++.-+..+..|..++++|+||+|||||||+|+.- .-+.. ..+...+
T Consensus 84 ~~fdLa~G~k~L--L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~ve-qE~~g~~t~~~~~~l~~D~~~~d 160 (582)
T KOG0062|consen 84 DNFDLAYGGKIL--LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVE-QEVRGDDTEALQSVLESDTERLD 160 (582)
T ss_pred eeeeeeecchhh--hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCch-hheeccchHHHhhhhhccHHHHH
Confidence 356666665543 5666666889999999999999999999999971 11110 0111110
Q ss_pred ---CCCccccCCCCC--cc------cc---ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHH---HH-
Q 025371 159 ---TSNEIGGDGDIP--HS------AI---GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---RS- 220 (254)
Q Consensus 159 ---~~~ei~~~~~~~--~~------~~---~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~---~~- 220 (254)
+..++....... .. .+ ...+.+..+|||.++|.++||||..+||+|+||||++.+|..++ ..
T Consensus 161 fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~y 240 (582)
T KOG0062|consen 161 FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENY 240 (582)
T ss_pred HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHH
Confidence 000000000000 00 00 01234456799999999999999999999999999999998873 33
Q ss_pred HHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 221 IAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 221 ~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+...+.|+|+++|+.++.+.++..+++
T Consensus 241 L~t~~~T~liVSHDr~FLn~V~tdIIH 267 (582)
T KOG0062|consen 241 LQTWKITSLIVSHDRNFLNTVCTDIIH 267 (582)
T ss_pred HhhCCceEEEEeccHHHHHHHHHHHHH
Confidence 334578999999999999888776665
No 373
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=4.1e-18 Score=177.68 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=105.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
..+++++|.......++++++.+++|+.++|+|+||||||||+++|.|++.++.|. ++.+++
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEEC
Confidence 46899999654334789999999999999999999999999999999999987432 122233
Q ss_pred CCCccccC---------CCCCcccc------------------ccc----cccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 159 TSNEIGGD---------GDIPHSAI------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 159 ~~~ei~~~---------~~~~~~~~------------------~~~----~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
|.+.+... .......+ +.. ..-..+|+||+|+.++|||+..+|++||+|
T Consensus 1367 Qdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1367 QDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446 (1522)
T ss_pred CCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 32221110 00000000 000 111236999999999999999999999999
Q ss_pred CCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCCh
Q 025371 208 EIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 208 Ep~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
||++++|... +.+.. -.++|+|+++|..+....+++-
T Consensus 1447 EaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrI 1489 (1522)
T TIGR00957 1447 EATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRV 1489 (1522)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEE
Confidence 9999999876 22222 2478999999998877776543
No 374
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.75 E-value=8.4e-18 Score=175.43 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=103.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccC-----
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD----- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~----- 166 (254)
+.++++++.......++++++.+++|+.++|+||||||||||+++|+|++++..|. ++.++.|...+...
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eN 718 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLREN 718 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHH
Confidence 45777777543223588899999999999999999999999999999999987442 34555554322110
Q ss_pred ----CCCCcccc-------------c---------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHH
Q 025371 167 ----GDIPHSAI-------------G---------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS 220 (254)
Q Consensus 167 ----~~~~~~~~-------------~---------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~ 220 (254)
........ . ...+...+||||+||+++|||+..+|+++++|||++++|......
T Consensus 719 I~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~ 798 (1522)
T TIGR00957 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 798 (1522)
T ss_pred hhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 00000000 0 001223479999999999999999999999999999999876222
Q ss_pred ----HH-----hCCceEEEEEchhhHHHHh
Q 025371 221 ----IA-----ERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 221 ----~~-----~~G~~vi~t~H~~~~~~~~ 241 (254)
+. ..|.|+|+++|+.+....+
T Consensus 799 i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~ 828 (1522)
T TIGR00957 799 IFEHVIGPEGVLKNKTRILVTHGISYLPQV 828 (1522)
T ss_pred HHHHHhhhhhhhcCCEEEEEeCChhhhhhC
Confidence 21 2468999999998777664
No 375
>PLN03130 ABC transporter C family member; Provisional
Probab=99.75 E-value=9.1e-18 Score=175.46 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=105.0
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC-C-----CeEEEEcCCCccccC---
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-Q-----KRVVIVDTSNEIGGD--- 166 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~-~-----~~i~~~~~~~ei~~~--- 166 (254)
+.++++++... ....+++++..+++|+.++|+||+|||||||+++|+|.+++.. | +++.++.|..-+...
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIr 696 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVR 696 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHH
Confidence 45778877532 1235888999999999999999999999999999999999875 2 245566654333211
Q ss_pred ------CCCCcccc------------------ccc----cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHH
Q 025371 167 ------GDIPHSAI------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218 (254)
Q Consensus 167 ------~~~~~~~~------------------~~~----~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~ 218 (254)
........ +.. .+-..+||||+||+++|||+..+|+++|+|||++++|+...
T Consensus 697 eNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~ 776 (1622)
T PLN03130 697 DNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776 (1622)
T ss_pred HHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 00000000 000 12224699999999999999999999999999999998752
Q ss_pred H----HHH---hCCceEEEEEchhhHHHHhCC
Q 025371 219 R----SIA---ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 219 ~----~~~---~~G~~vi~t~H~~~~~~~~~~ 243 (254)
. ++. ..|+|+|++||..+....+++
T Consensus 777 ~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~ 808 (1622)
T PLN03130 777 RQVFDKCIKDELRGKTRVLVTNQLHFLSQVDR 808 (1622)
T ss_pred HHHHHHHhhHHhcCCEEEEEECCHhHHHhCCE
Confidence 2 222 257899999999887766543
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.74 E-value=1.3e-17 Score=138.77 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=84.4
Q ss_pred hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC------------------------CeEEEEcCCCccccCCC
Q 025371 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------------KRVVIVDTSNEIGGDGD 168 (254)
Q Consensus 113 ~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~------------------------~~i~~~~~~~ei~~~~~ 168 (254)
+.++..+.+| +++|+||||||||||+++|++++++..+ .++.++.+.....+..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~- 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI- 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE-
Confidence 3455567888 9999999999999999999998754310 1122222211110000
Q ss_pred CCcccc--------ccccccCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEE
Q 025371 169 IPHSAI--------GTARRMQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLI 229 (254)
Q Consensus 169 ~~~~~~--------~~~~~~~~~s~g~~~~~~l~~al~----~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi 229 (254)
.+.... ...+....+|+|++|++++++++. .+|+++++|||++++|... +.++. .+.++|
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~tiI 170 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS-KETQFI 170 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-cCCEEE
Confidence 000000 011234457999999999999986 4669999999999999876 22332 378999
Q ss_pred EEEchhhHHHHhCChh
Q 025371 230 GTAHGEWLENIIKNPI 245 (254)
Q Consensus 230 ~t~H~~~~~~~~~~~~ 245 (254)
+++|+.+..+. .+.+
T Consensus 171 iitH~~~~~~~-~d~v 185 (197)
T cd03278 171 VITHRKGTMEA-ADRL 185 (197)
T ss_pred EEECCHHHHhh-cceE
Confidence 99999887764 4443
No 377
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.74 E-value=9.4e-18 Score=161.59 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=94.6
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC--CCeEE----------------EEcCCCccccC------
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVV----------------IVDTSNEIGGD------ 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~--~~~i~----------------~~~~~~ei~~~------ 166 (254)
.+++++..+++|+.++|+|||||||||||++|+|..++.. .+.|. ++.+...+...
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~ 119 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH 119 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence 5889999999999999999999999999999999987631 12222 22221111000
Q ss_pred ------CCCCcc----c----c-------c----ccccc------CCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHH
Q 025371 167 ------GDIPHS----A----I-------G----TARRM------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (254)
Q Consensus 167 ------~~~~~~----~----~-------~----~~~~~------~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~ 215 (254)
...+.. . . + ....+ ..+|+||+||+.++++|..+|+++++|||++++|.
T Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~ 199 (617)
T TIGR00955 120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199 (617)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence 001100 0 0 0 01122 23799999999999999999999999999999998
Q ss_pred HH-------HHHHHhCCceEEEEEchhh--HHHHhCChh
Q 025371 216 HA-------CRSIAERGVMLIGTAHGEW--LENIIKNPI 245 (254)
Q Consensus 216 ~~-------~~~~~~~G~~vi~t~H~~~--~~~~~~~~~ 245 (254)
.+ ++++++.|.|+|+|+|..+ +.+.+++-.
T Consensus 200 ~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ 238 (617)
T TIGR00955 200 FMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII 238 (617)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE
Confidence 76 4455566999999999964 456665543
No 378
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=1e-17 Score=166.12 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=103.7
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC----------------
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT---------------- 159 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~---------------- 159 (254)
..+++++|+.. ....+++++..+++|+.++|+||+||||||....|-+++.|+.| . +.+|.
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G-~-V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG-K-VKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-e-EEECCcccccCCHHHHHHhcc
Confidence 45888888753 23467889999999999999999999999999999999998743 3 33321
Q ss_pred ----CCcc---------ccC-CCCCccccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCE
Q 025371 160 ----SNEI---------GGD-GDIPHSAIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 160 ----~~ei---------~~~-~~~~~~~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
.+.+ .+. ...+...+. .. .+-..+||||+||.++|||+..+|++
T Consensus 1068 lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1068 LVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred eeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence 1111 111 000110000 00 12234699999999999999999999
Q ss_pred EEEeCCCchHHHHH---HHHH---HhCCceEEEEEchhhHHHHhCC
Q 025371 204 IIVDEIGTEAEAHA---CRSI---AERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 204 iilDEp~~~ld~~~---~~~~---~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|+|||.|+.||.+. ..++ +..|.|+|++.|..+..+..+.
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~ 1193 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADV 1193 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCE
Confidence 99999999999876 2222 3458999999999887766543
No 379
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.74 E-value=6.2e-18 Score=150.28 Aligned_cols=135 Identities=16% Similarity=0.249 Sum_probs=98.9
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-------------ccc------cCCCCCc
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------------EIG------GDGDIPH 171 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-------------ei~------~~~~~~~ 171 (254)
..+.+++.+++|+.++|+|.+|||||||-.+|.+++++. +.|.+..++. ++. |....|.
T Consensus 302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~--G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC--ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 567888899999999999999999999999999999874 4444432210 000 0011122
Q ss_pred ccccc------------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHH
Q 025371 172 SAIGT------------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 215 (254)
Q Consensus 172 ~~~~~------------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~ 215 (254)
+.++. .+...-+||||+||.++|||+..+|++|++|||++.+|.
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 21110 011123499999999999999999999999999999997
Q ss_pred HH-------HHHHHh-CCceEEEEEchhhHHHHhCChhhh
Q 025371 216 HA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 216 ~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.. ++.+.+ .|.+-++++|+..+..++++.++-
T Consensus 460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV 499 (534)
T COG4172 460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIV 499 (534)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEE
Confidence 54 334433 377999999999999999887754
No 380
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=1.3e-17 Score=173.62 Aligned_cols=145 Identities=16% Similarity=0.184 Sum_probs=102.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE-------------------EEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i-------------------~~~ 157 (254)
..+++++|.......++++++.+++|+.++|+|+||||||||+++|.|++. . .+.| .++
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-~G~I~IdG~di~~i~~~~lR~~is~I 1297 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T-EGEIQIDGVSWNSVTLQTWRKAFGVI 1297 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEcccCCHHHHHhceEEE
Confidence 468999997644457899999999999999999999999999999999986 3 3333 233
Q ss_pred cCCCccccCC---CC-Ccc-----cc-cc-----------------c----cccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 158 DTSNEIGGDG---DI-PHS-----AI-GT-----------------A----RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 158 ~~~~ei~~~~---~~-~~~-----~~-~~-----------------~----~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+|.+.+.... ++ |.. .+ .. . ..-..+|+||+|+.++|||+..+|++|||
T Consensus 1298 pQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271 1298 PQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred eCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3322221100 00 000 00 00 0 00113699999999999999999999999
Q ss_pred eCCCchHHHHH---HHH-HH--hCCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHA---CRS-IA--ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~---~~~-~~--~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||++++|... +.+ +. ..++|+|+++|..+....+++
T Consensus 1378 DEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~Dr 1420 (1490)
T TIGR01271 1378 DEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQ 1420 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 99999999876 222 11 247899999999887776654
No 381
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=1.2e-17 Score=134.43 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=96.5
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccc------------c-C---CCCCccc
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------------G-D---GDIPHSA 173 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~------------~-~---~~~~~~~ 173 (254)
...+.+++.++.|+.++++|.||||||||.+.|+|.++|+. +++.+-+..-++. + + ...|..+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs-G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC-ceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 45667888899999999999999999999999999999984 4444333211110 0 0 0111111
Q ss_pred ccc------------------------cc-----------ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-
Q 025371 174 IGT------------------------AR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (254)
Q Consensus 174 ~~~------------------------~~-----------~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~- 217 (254)
++. .+ ....++.|++||+++||||..+|++||.||.-+++|+..
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smr 185 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHH
Confidence 110 01 112248999999999999999999999999999999875
Q ss_pred ------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 218 ------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 ------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..++.+ .|+.-|.++....+.+.+.+.++
T Consensus 186 sQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~vi 221 (267)
T COG4167 186 SQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVL 221 (267)
T ss_pred HHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEE
Confidence 333433 48898998888887877777654
No 382
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.73 E-value=1.5e-17 Score=171.97 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=95.3
Q ss_pred EEEEEEEC--ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC---cCCCC--------------eEEEEc
Q 025371 98 VGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS---DEFQK--------------RVVIVD 158 (254)
Q Consensus 98 ~~l~ir~~--~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~---~~~~~--------------~i~~~~ 158 (254)
.++++.+. ......+++++..+++|+.++|+|||||||||||++|+|+.+ ++.|. .+.++.
T Consensus 763 ~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~ 842 (1394)
T TIGR00956 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQ 842 (1394)
T ss_pred EeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeec
Confidence 45555553 111235888999999999999999999999999999999986 33121 122333
Q ss_pred CCCccccC----------C--CCCcc----c----c-------c----cccccC----CCChhHHHHHHHHHHHccCCC-
Q 025371 159 TSNEIGGD----------G--DIPHS----A----I-------G----TARRMQ----VPEPSLQHKVMIEAVENHMPE- 202 (254)
Q Consensus 159 ~~~ei~~~----------~--~~~~~----~----~-------~----~~~~~~----~~s~g~~~~~~l~~al~~~P~- 202 (254)
|...+... . ..+.. . + + ..+.+. -+|+||+||+.++++|..+|+
T Consensus 843 Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~ 922 (1394)
T TIGR00956 843 QQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL 922 (1394)
T ss_pred ccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe
Confidence 22110000 0 00000 0 0 0 001121 479999999999999999997
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhH
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWL 237 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~ 237 (254)
+|++|||++++|..+ ++++++.|.|+|+|+|..+.
T Consensus 923 iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 923 LLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 999999999999876 55556679999999999774
No 383
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.73 E-value=2e-17 Score=139.13 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=83.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcc-CcCCCC-----------------eEEEEc-CCCccccC---CCCCcccc---
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVL-SDEFQK-----------------RVVIVD-TSNEIGGD---GDIPHSAI--- 174 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~-~~~~~~-----------------~i~~~~-~~~ei~~~---~~~~~~~~--- 174 (254)
.+|+.++|+||||||||||+++|++.+ .+..+. .+.... ........ .......+
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~ 105 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRI 105 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHh
Confidence 347899999999999999999999543 221111 011110 00000000 00000000
Q ss_pred ----------ccccccCCCChhHHHHHHHHHHHcc----------CCCEEEEeCCCchHHHHH-------HHHHHhCCce
Q 025371 175 ----------GTARRMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEAHA-------CRSIAERGVM 227 (254)
Q Consensus 175 ----------~~~~~~~~~s~g~~~~~~l~~al~~----------~P~viilDEp~~~ld~~~-------~~~~~~~G~~ 227 (254)
...+....+|+|++|+++++++++. +|+++++|||++++|+.. +.++.+.|++
T Consensus 106 ~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 106 VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRM 185 (213)
T ss_pred hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 0012334579999999999999974 579999999999999865 3344455899
Q ss_pred EEEEEchhhHHHHhCChhhh
Q 025371 228 LIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 228 vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+++|+.+....+++.++.
T Consensus 186 ii~itH~~~~~~~~~~~i~~ 205 (213)
T cd03279 186 VGVISHVEELKERIPQRLEV 205 (213)
T ss_pred EEEEECchHHHHhhCcEEEE
Confidence 99999999888888777654
No 384
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=7.6e-17 Score=154.63 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=95.4
Q ss_pred ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC--CCCeEE----------------EEcCCCccccC----
Q 025371 109 SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE--FQKRVV----------------IVDTSNEIGGD---- 166 (254)
Q Consensus 109 ~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~--~~~~i~----------------~~~~~~ei~~~---- 166 (254)
...++.++..+++|++.+|+||+||||||||++|+|..+.. ..+.|. ++.|..-+...
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~ 122 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVR 122 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHH
Confidence 34588899999999999999999999999999999998752 122222 22221110000
Q ss_pred --------CCCCcc----cc-----------c----cccccC-----CCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 167 --------GDIPHS----AI-----------G----TARRMQ-----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 167 --------~~~~~~----~~-----------~----~~~~~~-----~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
...|.. .. + ....+. -.|+|+++|+.++.-+.++|.++++||||+++|
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLD 202 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLD 202 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcc
Confidence 001100 00 0 001111 258999999999999999999999999999999
Q ss_pred HHH-------HHHHHhCCceEEEEEchhh--HHHHhCChhh
Q 025371 215 AHA-------CRSIAERGVMLIGTAHGEW--LENIIKNPIL 246 (254)
Q Consensus 215 ~~~-------~~~~~~~G~~vi~t~H~~~--~~~~~~~~~~ 246 (254)
... ++++++.|.+||+|.|..+ +-+.+++-.+
T Consensus 203 S~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~l 243 (613)
T KOG0061|consen 203 SFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLL 243 (613)
T ss_pred hhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhh
Confidence 865 6667778999999999854 4455655443
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.71 E-value=4.3e-17 Score=169.76 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=95.3
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccC---------CCCCc---cc
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD---------GDIPH---SA 173 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~---------~~~~~---~~ 173 (254)
.++++++.+++|+.++|+|||||||||||++|+|++++..|. ++.++.+...+... ..... ..
T Consensus 441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 520 (1490)
T TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS 520 (1490)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence 477888899999999999999999999999999999987542 34455554322110 00000 00
Q ss_pred c-c------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH-------HhCCce
Q 025371 174 I-G------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-------AERGVM 227 (254)
Q Consensus 174 ~-~------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~-------~~~G~~ 227 (254)
. . ...+...+|+||+||+++|||+..+|+++|+|||++++|+.....+ ...|.|
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t 600 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 0 0 0012235799999999999999999999999999999998762221 124889
Q ss_pred EEEEEchhhHHHHh
Q 025371 228 LIGTAHGEWLENII 241 (254)
Q Consensus 228 vi~t~H~~~~~~~~ 241 (254)
+|+++|+.+....+
T Consensus 601 vilvtH~~~~~~~a 614 (1490)
T TIGR01271 601 RILVTSKLEHLKKA 614 (1490)
T ss_pred EEEEeCChHHHHhC
Confidence 99999998776653
No 386
>PTZ00243 ABC transporter; Provisional
Probab=99.71 E-value=4.2e-17 Score=170.15 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=95.8
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccC-------CCCCcc--cc--
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD-------GDIPHS--AI-- 174 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~-------~~~~~~--~~-- 174 (254)
.++++++.+++|+.++|+||||||||||+++|+|+++++.|. ++.++.+...+... ...+.. ..
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~ 754 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLAD 754 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHH
Confidence 477888899999999999999999999999999999887442 45556554332110 000000 00
Q ss_pred ----------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHH----HH---HhCCce
Q 025371 175 ----------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI---AERGVM 227 (254)
Q Consensus 175 ----------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~----~~---~~~G~~ 227 (254)
+ ...+...+|+||+||+++|||+..+|+++|+|||++++|+.... .+ ...|.|
T Consensus 755 ~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~T 834 (1560)
T PTZ00243 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834 (1560)
T ss_pred HHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCE
Confidence 0 01233457999999999999999999999999999999986522 11 224889
Q ss_pred EEEEEchhhHHHHh
Q 025371 228 LIGTAHGEWLENII 241 (254)
Q Consensus 228 vi~t~H~~~~~~~~ 241 (254)
+|+++|+.+.....
T Consensus 835 vIlvTH~~~~~~~a 848 (1560)
T PTZ00243 835 RVLATHQVHVVPRA 848 (1560)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998877654
No 387
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.70 E-value=8.5e-18 Score=131.26 Aligned_cols=97 Identities=18% Similarity=0.316 Sum_probs=67.4
Q ss_pred hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-----------ccccCCC----CCcccc---
Q 025371 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-----------EIGGDGD----IPHSAI--- 174 (254)
Q Consensus 113 ~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-----------ei~~~~~----~~~~~~--- 174 (254)
++++..+.+|++++|+|+||||||||+++|+|..++.. +.+ .++... .+.+... .+...+
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~-G~i-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS-GSI-LINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE-EEE-EETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccc-ccc-ccccccccccccccccccccccccccccccccccccc
Confidence 45677799999999999999999999999999998752 333 222100 0000000 000000
Q ss_pred -----------------cccccc----CCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 175 -----------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 175 -----------------~~~~~~----~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
.....+ ..+|+|++||+++++++..+|+++|+|||++
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 001222 5679999999999999999999999999985
No 388
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=141.38 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=101.9
Q ss_pred EEEEEEE--CceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC----CCeEEEEcCC-----------
Q 025371 98 VGLTCRV--GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF----QKRVVIVDTS----------- 160 (254)
Q Consensus 98 ~~l~ir~--~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~----~~~i~~~~~~----------- 160 (254)
.++++.+ ........+.+++.+.+||.++++|.+|||||-..+++.++++... .+.+.+-...
T Consensus 10 ~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~ 89 (534)
T COG4172 10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRG 89 (534)
T ss_pred eccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhh
Confidence 3444444 3334456889999999999999999999999999999999998531 1222221110
Q ss_pred ---CccccC------CCCCcccccc------------------------c---------c----ccCCCChhHHHHHHHH
Q 025371 161 ---NEIGGD------GDIPHSAIGT------------------------A---------R----RMQVPEPSLQHKVMIE 194 (254)
Q Consensus 161 ---~ei~~~------~~~~~~~~~~------------------------~---------~----~~~~~s~g~~~~~~l~ 194 (254)
+.+... ...|-..++. . + ....+|||++||++||
T Consensus 90 iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIA 169 (534)
T COG4172 90 VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIA 169 (534)
T ss_pred hcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHH
Confidence 000000 0001000000 0 0 1113599999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.||..+|++||.||||+.+|... +.++. +.|..++++||+.++...+.+++.
T Consensus 170 MALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~ 229 (534)
T COG4172 170 MALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY 229 (534)
T ss_pred HHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE
Confidence 99999999999999999999754 33443 348999999999999999988764
No 389
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.70 E-value=1.3e-16 Score=147.06 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=97.8
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC--------C--CeEEEEcCCCccccCC-----CCCccc--
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--------Q--KRVVIVDTSNEIGGDG-----DIPHSA-- 173 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~--------~--~~i~~~~~~~ei~~~~-----~~~~~~-- 173 (254)
..+++++.|.+|++++|+||||||||+|+|+|+|+++-.. + +.+++++|++.+.... -+|...
T Consensus 450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~ 529 (659)
T KOG0060|consen 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAED 529 (659)
T ss_pred eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCcccc
Confidence 3567888899999999999999999999999999998432 1 3367777766544320 011000
Q ss_pred ----cc----------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH----
Q 025371 174 ----IG----------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---- 217 (254)
Q Consensus 174 ----~~----------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~---- 217 (254)
.. ......++|+|++||.++||.+.++|++-|+||-|++++.+.
T Consensus 530 ~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~ 609 (659)
T KOG0060|consen 530 MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGAL 609 (659)
T ss_pred ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHH
Confidence 00 002234579999999999999999999999999999766554
Q ss_pred HHHHHhCCceEEEEEchhhHHHHh
Q 025371 218 CRSIAERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 218 ~~~~~~~G~~vi~t~H~~~~~~~~ 241 (254)
.+.+.+.|.|.|++.|..++.+.-
T Consensus 610 Yr~~r~~giT~iSVgHRkSL~kfH 633 (659)
T KOG0060|consen 610 YRKCREMGITFISVGHRKSLWKFH 633 (659)
T ss_pred HHHHHHcCCeEEEeccHHHHHhhh
Confidence 555667799999999998876643
No 390
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.70 E-value=6.6e-17 Score=161.00 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=106.4
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-----------CCccccCC
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-----------SNEIGGDG 167 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-----------~~ei~~~~ 167 (254)
++++.++.... +.+.++..+++||++++.|+|||||||++++|+|..+++.|. +..-.. ...+++
T Consensus 569 ~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~-a~i~g~~i~~~~~~~~~~~~iGy-- 644 (885)
T KOG0059|consen 569 NLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE-ALIKGHDITVSTDFQQVRKQLGY-- 644 (885)
T ss_pred ceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcce-EEEecCccccccchhhhhhhccc--
Confidence 56666655443 577888999999999999999999999999999999998544 222111 111222
Q ss_pred CCCccccc----------------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 168 DIPHSAIG----------------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 168 ~~~~~~~~----------------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
.|+.+.. ..++...+|+|+++|..++.|+.-+|++++||
T Consensus 645 -CPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD 723 (885)
T KOG0059|consen 645 -CPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD 723 (885)
T ss_pred -CCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec
Confidence 2322100 01344567999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||++++|+.+ +.++.+.|..+|.|+|..+..++++++.-.
T Consensus 724 EPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 724 EPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhhe
Confidence 9999999877 444556677999999997777777666543
No 391
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=5.5e-17 Score=167.89 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=92.7
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-CCCe----------------EEEEcCCCccccC-------
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKR----------------VVIVDTSNEIGGD------- 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-~~~~----------------i~~~~~~~ei~~~------- 166 (254)
.+++++..+++|+.++|+|||||||||||++|+|..++. ..+. +.++.|...+...
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 578888999999999999999999999999999987531 0111 2233332111000
Q ss_pred -----CCCCc----cc----c-------c--c--cccc-----CCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 167 -----GDIPH----SA----I-------G--T--ARRM-----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 167 -----~~~~~----~~----~-------~--~--~~~~-----~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
...+. .. + + . ...+ .-+|+||+||+.++++|..+|++|++|||++++|..+
T Consensus 975 ~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~ 1054 (1470)
T PLN03140 975 IYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054 (1470)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 00000 00 0 0 0 0111 2479999999999999999999999999999999876
Q ss_pred -------HHHHHhCCceEEEEEchhhH--HHHhCC
Q 025371 218 -------CRSIAERGVMLIGTAHGEWL--ENIIKN 243 (254)
Q Consensus 218 -------~~~~~~~G~~vi~t~H~~~~--~~~~~~ 243 (254)
++++++.|.|+|+|+|..+. .+.+++
T Consensus 1055 a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCE
Confidence 55566779999999999763 454543
No 392
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=1.3e-16 Score=136.53 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=51.4
Q ss_pred cCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 180 MQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~----~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
...+|+|++|+.++++++. .+|+++++|||++++|+.. +.++. .+.++|+++|..++...+++-..
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~~~~ii~~~h~~~~~~~~d~i~~ 232 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-DGAQFITTTFRPELLEVADKFYG 232 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEE
Confidence 3457999999999999996 3589999999999999876 33332 37889999999887765554433
No 393
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=131.02 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=94.2
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-------------------CCccccCCCCC
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------------------SNEIGGDGDIP 170 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-------------------~~ei~~~~~~~ 170 (254)
..++.++..+..|+++.|+|.||+|||||+++|+|.+.++.| +|.+... .+... ..+
T Consensus 20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G-~I~Idg~dVtk~~~~~RA~~larVfQdp~~g---t~~ 95 (263)
T COG1101 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG-QILIDGVDVTKKSVAKRANLLARVFQDPLAG---TAP 95 (263)
T ss_pred HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCc-eEEECceecccCCHHHHhhHHHHHhcchhhC---Ccc
Confidence 357778888999999999999999999999999999999844 4333211 00000 000
Q ss_pred cccc-------------------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 171 HSAI-------------------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 171 ~~~~-------------------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
...+ + ...+++.+||||+|.+.+..|-.+.|+++++||-
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 0000 0 0134556799999999999999999999999999
Q ss_pred CchHHHHHHHH-------HH-hCCceEEEEEchhhHHHHhCChh
Q 025371 210 GTEAEAHACRS-------IA-ERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 210 ~~~ld~~~~~~-------~~-~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
++++|+..... +. +...|.+++||...-+-.+.++.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~Rl 219 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRL 219 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeE
Confidence 99999976222 22 34668999999866555555544
No 394
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.68 E-value=1.8e-16 Score=132.55 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=78.6
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHH----hccCcCCCC---------------eEEEE-cCC--CccccC------CCC-
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIA----RVLSDEFQK---------------RVVIV-DTS--NEIGGD------GDI- 169 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~----g~~~~~~~~---------------~i~~~-~~~--~ei~~~------~~~- 169 (254)
+.+| +++|+||||||||||+++|. |..++..+. .+... +.. ..+... ..+
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 5555 99999999999999999995 776654221 11111 111 000000 000
Q ss_pred --Ccccc--ccccccCCCChhHHHH------HHHHHHHccCCCEEEEeCCCchHHHHHHH--------HHHhC-CceEEE
Q 025371 170 --PHSAI--GTARRMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAER-GVMLIG 230 (254)
Q Consensus 170 --~~~~~--~~~~~~~~~s~g~~~~------~~l~~al~~~P~viilDEp~~~ld~~~~~--------~~~~~-G~~vi~ 230 (254)
+.... ...+....+|+|++++ +++++++..+|+++++|||++++|+.... ++.+. |.++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 99 FCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred eechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 00000 0012345679999996 67899999999999999999999976533 22333 789999
Q ss_pred EEchhhHHHHhC
Q 025371 231 TAHGEWLENIIK 242 (254)
Q Consensus 231 t~H~~~~~~~~~ 242 (254)
++|..+....++
T Consensus 179 itH~~~~~~~~d 190 (204)
T cd03240 179 ITHDEELVDAAD 190 (204)
T ss_pred EEecHHHHhhCC
Confidence 999988776543
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.67 E-value=1.9e-16 Score=145.01 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~---------- 166 (254)
+.++++.+.+..+ +.+..+.+.+|+.++|+|+|||||||+|++|++-..|. ..++.++--..++...
T Consensus 78 ~~sls~s~~g~~l--~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 78 IESLSLSFHGVEL--IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred eeeeeeccCCcee--eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-CcccchhhhcccCCCchHHHHHHHhh
Confidence 5678887766554 77777889999999999999999999999999988775 2232222111111000
Q ss_pred -----------------CCCCc---ccc-------------------------------ccccccCCCChhHHHHHHHHH
Q 025371 167 -----------------GDIPH---SAI-------------------------------GTARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 167 -----------------~~~~~---~~~-------------------------------~~~~~~~~~s~g~~~~~~l~~ 195 (254)
..... ... ...+.+.-+|+|+++|+++|+
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR 234 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence 00000 000 001333445999999999999
Q ss_pred HHccCCCEEEEeCCCchHHHHH---HHHH-HhCCc-eEEEEEchhhHHHHhCChhhh
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA---CRSI-AERGV-MLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~---~~~~-~~~G~-~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|..+|++|++|||++.+|.++ +.+. ..... ++++++|..+....++..++.
T Consensus 235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIH 291 (614)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhhe
Confidence 9999999999999999999987 3333 33333 899999999888888877665
No 396
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=6.2e-16 Score=133.64 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=53.5
Q ss_pred CCCChhHHHHHHHHHHHccC---CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 181 QVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~---P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|+|++||+.+++++..+ |+++|+|||++++|... +.++.+.|+++|+++|+.+..+. .+.++
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~-aD~ii 242 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC-ADWII 242 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-CCEEE
Confidence 34699999999999999986 79999999999999876 44455679999999999887764 44443
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.66 E-value=2.7e-16 Score=131.08 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=80.4
Q ss_pred hhhccccCCc-EEEEECCCCCCHHHHHHHHH--------hccCcCCCC-eEEEEcCCCccccCCCCCccccccccccCCC
Q 025371 114 MVYDLLHYGK-SILFVGRPGVGKTTVMREIA--------RVLSDEFQK-RVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 183 (254)
Q Consensus 114 ~l~~~i~~g~-~~~i~G~~GsGKTTLl~~l~--------g~~~~~~~~-~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~ 183 (254)
.++..+.+|+ .++|+||||||||||++.|+ |...|.... .+.++++.-.. ..... ........+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~-----lg~~~-~l~~~~s~f 92 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFAD-----IGDEQ-SIEQSLSTF 92 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEe-----cCchh-hhhcCcchH
Confidence 4556688885 79999999999999999998 544332110 11111111000 00000 011234556
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH--------HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 184 s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--------~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|+|++++..+++++ .+|+++++|||++++|... +..+.+.|.++|+++|...+.+.+++
T Consensus 93 s~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~ 159 (200)
T cd03280 93 SSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYK 159 (200)
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhc
Confidence 88999988887764 7999999999999988764 23344568899999998776665544
No 398
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.66 E-value=2.7e-16 Score=162.79 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=90.5
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC----cCCCCe------------------EEEEcCCCccccC--
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS----DEFQKR------------------VVIVDTSNEIGGD-- 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~----~~~~~~------------------i~~~~~~~ei~~~-- 166 (254)
.+++++..+++|+.++|+||||||||||||+|+|... +. .+. +.++.+...+...
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~-~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGV-EGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCc-eeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 4788888899999999999999999999999999863 22 122 2333322111000
Q ss_pred ----------CCCCc--------cc----c-c------cc-----c-----ccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 167 ----------GDIPH--------SA----I-G------TA-----R-----RMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 167 ----------~~~~~--------~~----~-~------~~-----~-----~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
...+. .. . . .. + ...-+|+||+||+.+++++..+|+++++|
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 00000 00 0 0 00 0 11236999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHh-CCceEEEEEchh--hHHHHhCCh
Q 025371 208 EIGTEAEAHA-------CRSIAE-RGVMLIGTAHGE--WLENIIKNP 244 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~-~G~~vi~t~H~~--~~~~~~~~~ 244 (254)
||++++|... ++++++ .|.++|+++|.. .+.+.+++-
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v 281 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKV 281 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE
Confidence 9999999876 455554 489999999984 344444443
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.64 E-value=6.3e-16 Score=139.31 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=96.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----eEEEEcCCCccccCCC----------------CCcccc----
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK----RVVIVDTSNEIGGDGD----------------IPHSAI---- 174 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~----~i~~~~~~~ei~~~~~----------------~~~~~~---- 174 (254)
+..||+++++||||-|||||.+.|+|.+.|+.+. ++.+-+|...-.+.+. .....+
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 6678899999999999999999999999998652 3333333211111100 000000
Q ss_pred ----ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhC
Q 025371 175 ----GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 175 ----~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~ 242 (254)
...+.+.-+|||+-||+++|++|..+.|+.++|||.+-+|.+. ++++. +++++.+++-|+.-+.+.+.
T Consensus 444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhh
Confidence 0125566789999999999999999999999999999999764 55555 45789999999999999999
Q ss_pred Chhhh
Q 025371 243 NPILS 247 (254)
Q Consensus 243 ~~~~~ 247 (254)
++++-
T Consensus 524 Dr~iv 528 (591)
T COG1245 524 DRLIV 528 (591)
T ss_pred ceEEE
Confidence 88765
No 400
>PLN03140 ABC transporter G family member; Provisional
Probab=99.64 E-value=2.8e-16 Score=162.70 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=93.0
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC---CC---------------CeEEEEcCCCccc-------
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE---FQ---------------KRVVIVDTSNEIG------- 164 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~---~~---------------~~i~~~~~~~ei~------- 164 (254)
..+++++..+++|+.++|+|||||||||||++|+|.++++ .| +.+.++.+...+.
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 3588889999999999999999999999999999998764 11 1223333321100
Q ss_pred ---cC---CCC-----------Cc---------cc-------------------------ccc---------ccccCCCC
Q 025371 165 ---GD---GDI-----------PH---------SA-------------------------IGT---------ARRMQVPE 184 (254)
Q Consensus 165 ---~~---~~~-----------~~---------~~-------------------------~~~---------~~~~~~~s 184 (254)
+. ... .. .. ++. .....-+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 00 000 00 00 000 01112469
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHh-CCceEEEEEchh--hHHHHhCCh
Q 025371 185 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGE--WLENIIKNP 244 (254)
Q Consensus 185 ~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~--~~~~~~~~~ 244 (254)
+||+||+.+++++..+|+++++|||++++|... +++++. .|.|+|+++|.. ++.+.+++-
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 999999999999999999999999999999876 444444 588999999974 455555543
No 401
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.64 E-value=5e-16 Score=142.33 Aligned_cols=149 Identities=13% Similarity=0.168 Sum_probs=103.2
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe-------EEEEcCC--CccccC--
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-------VVIVDTS--NEIGGD-- 166 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~-------i~~~~~~--~ei~~~-- 166 (254)
.+++++|.... -....+++-+..++.++++||||+||||||+.+.|.+.|..|.. +..+.+. .++.++
T Consensus 393 ~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s 471 (614)
T KOG0927|consen 393 QNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKS 471 (614)
T ss_pred eccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchh
Confidence 45666665442 35677888899999999999999999999999999999874421 1111111 011110
Q ss_pred ------CCCCc-cc---c----c--------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHH---H
Q 025371 167 ------GDIPH-SA---I----G--------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS---I 221 (254)
Q Consensus 167 ------~~~~~-~~---~----~--------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~---~ 221 (254)
..++. .. + + ....+..+|.|++.|+++++++...|.+|+|||||+++|+..+.. +
T Consensus 472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea 551 (614)
T KOG0927|consen 472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551 (614)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH
Confidence 00110 00 0 0 113445679999999999999999999999999999999887444 4
Q ss_pred HhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 222 AER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 222 ~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.+. .-+||+++|+.-+..-+..++..
T Consensus 552 iNe~~Ggvv~vSHDfrlI~qVaeEi~~ 578 (614)
T KOG0927|consen 552 INEFPGGVVLVSHDFRLISQVAEEIWV 578 (614)
T ss_pred HhccCCceeeeechhhHHHHHHHHhHh
Confidence 443 45899999998888877766544
No 402
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.1e-16 Score=137.81 Aligned_cols=140 Identities=19% Similarity=0.233 Sum_probs=98.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------eEEEEcCCC--------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-------- 161 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------~i~~~~~~~-------- 161 (254)
+.++++.|+...+ .+..+.+-|.-...++|+||||.||||||+.|.|-+.|+.++ +|.++++..
T Consensus 589 lH~VtFgy~gqkp-LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 589 LHDVTFGYPGQKP-LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred cccccccCCCCCc-hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcccc
Confidence 5678888866543 466677778878899999999999999999999999987442 455554421
Q ss_pred ---cc-ccCCCCCcccc----cc--------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHH---
Q 025371 162 ---EI-GGDGDIPHSAI----GT--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA--- 222 (254)
Q Consensus 162 ---ei-~~~~~~~~~~~----~~--------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~--- 222 (254)
|+ .-...+|+... +. ..++..+|||++.|++++..-...||+||+|||++++|+..+..+.
T Consensus 668 tp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI 747 (807)
T KOG0066|consen 668 TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI 747 (807)
T ss_pred CHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH
Confidence 00 00012232211 00 1233456999999999999999999999999999999988754443
Q ss_pred hC-CceEEEEEchhhH
Q 025371 223 ER-GVMLIGTAHGEWL 237 (254)
Q Consensus 223 ~~-G~~vi~t~H~~~~ 237 (254)
+. .-+||+++|+..+
T Consensus 748 ney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 748 NEYNGGVIMVSHDERL 763 (807)
T ss_pred HhccCcEEEEecccce
Confidence 32 4579999998653
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.61 E-value=1.5e-15 Score=138.94 Aligned_cols=129 Identities=14% Similarity=0.214 Sum_probs=96.4
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC-------CCeEEEEcCCCccccCCCCCccccc-----c---
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF-------QKRVVIVDTSNEIGGDGDIPHSAIG-----T--- 176 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~-------~~~i~~~~~~~ei~~~~~~~~~~~~-----~--- 176 (254)
...+.+.+++|..++|+||||||||+|+|.|.|++|-.. ..++++++|++.+... .+..+.+. .
T Consensus 498 v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~g-tlRDQIIYPdS~e~~~~ 576 (728)
T KOG0064|consen 498 VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGG-TLRDQIIYPDSSEQMKR 576 (728)
T ss_pred ecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcC-cccceeecCCcHHHHHh
Confidence 456777799999999999999999999999999998421 3457888887766532 11111000 0
Q ss_pred ------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH----HHHHH
Q 025371 177 ------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSIA 222 (254)
Q Consensus 177 ------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~----~~~~~ 222 (254)
....+++|+|++||..+||.+-++|++-++||.++...++. +..++
T Consensus 577 kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak 656 (728)
T KOG0064|consen 577 KGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK 656 (728)
T ss_pred cCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence 01223569999999999999999999999999999654433 44555
Q ss_pred hCCceEEEEEchhhHHHHh
Q 025371 223 ERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 223 ~~G~~vi~t~H~~~~~~~~ 241 (254)
..|.+.+.++|..++...-
T Consensus 657 ~~gi~llsithrpslwk~h 675 (728)
T KOG0064|consen 657 DAGISLLSITHRPSLWKYH 675 (728)
T ss_pred hcCceEEEeecCccHHHHH
Confidence 6799999999999877653
No 404
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.8e-15 Score=137.34 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=93.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-c------cc-cCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-E------IG-GDGD 168 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-e------i~-~~~~ 168 (254)
.+++++.|.... ..+.++++.+.+|+.++++||+|+||||+||.|.++..-+.| . +.+|... . +. ..+-
T Consensus 540 fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-s-I~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 540 FSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-S-ITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred EEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-e-EEEcCchHHHHHHHHHHHhcCc
Confidence 358888886544 368899999999999999999999999999999999876532 2 3332210 0 00 0011
Q ss_pred CCcccc------------cc--------------------------------ccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 169 IPHSAI------------GT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 169 ~~~~~~------------~~--------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
+|+... +. -.+---+|||+|||+++||++..+|.+|
T Consensus 617 VPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 617 VPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred ccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 122110 00 0112235999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~ 236 (254)
++||.++.+|... +.+++ .+.|.|++.|..+
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLS 734 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLS 734 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeeh
Confidence 9999999998654 22332 3667777888754
No 405
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.60 E-value=2.1e-15 Score=129.92 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=50.7
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 181 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~----~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
..+|+|++|++++++++. .+|+++++|||++++|... +.++ ..|.++|+++|..+..+..++-
T Consensus 165 ~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 165 TELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred cccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEE
Confidence 356999999999999997 4789999999999999776 2222 3488999999998877765443
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.59 E-value=6e-15 Score=118.97 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=77.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc-
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH- 199 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~- 199 (254)
++...+|+|||||||||+++++.-......+. ... ..+.......+............+|+|++++..+++++..
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~-~~~---~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~ 95 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSA-TRR---RSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALA 95 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchh-hhc---cCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhc
Confidence 34589999999999999999987665443211 111 0000000011111100001112378999999999999986
Q ss_pred ---CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 200 ---MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 200 ---~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
+|+++++|||++++|... +.+....|.++|+++|..+.....+
T Consensus 96 ~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 96 SLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELAD 148 (162)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhh
Confidence 789999999999988865 3343344789999999988877654
No 407
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.4e-15 Score=132.77 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=96.7
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC--ccc------cCCCC
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN--EIG------GDGDI 169 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~--ei~------~~~~~ 169 (254)
.++++.|.... ..++.+++.+..|+.++++||+|+||||+++.|.+++.++.| . ++++... +.. ..+-+
T Consensus 266 ~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~-I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 266 INVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-S-ITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-e-EEEcchhHHHhHHHHHHHHhCcC
Confidence 46777776544 368889999999999999999999999999999999998743 3 3333210 000 00112
Q ss_pred Ccccc------------cc--------------------------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 170 PHSAI------------GT--------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 170 ~~~~~------------~~--------------------------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
|+... +. -.+...+|||+|||+++||++..+|.+++
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 22110 00 01222359999999999999999999999
Q ss_pred EeCCCchHHHHHH------HHHHhCCceEEEEEchhhH
Q 025371 206 VDEIGTEAEAHAC------RSIAERGVMLIGTAHGEWL 237 (254)
Q Consensus 206 lDEp~~~ld~~~~------~~~~~~G~~vi~t~H~~~~ 237 (254)
+||.++.+|...- ..-...|+|.+.+.|..+-
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst 460 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST 460 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh
Confidence 9999999998651 1222469999999998653
No 408
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.58 E-value=6.9e-15 Score=120.44 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=75.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCC-----CeEEEEcCC---------CccccC---CCCCccccccccccCCCChh
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTS---------NEIGGD---GDIPHSAIGTARRMQVPEPS 186 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~-----~~i~~~~~~---------~ei~~~---~~~~~~~~~~~~~~~~~s~g 186 (254)
..+|+||||||||+++.+|.-....... .......+. .++.+. ..+|+. ....++|+|
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~-----~~~~~LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQG-----KVEQILSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCC-----cCcccCCHH
Confidence 8899999999999999998755432100 000000000 000000 011111 233458999
Q ss_pred HHHHHHHHHHHc----cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 187 LQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 187 ~~~~~~l~~al~----~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
++++..+++++. .+|+++++|||++++|... +.++.+.|.++|+++|+.+.....+
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~ad 165 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENAD 165 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCC
Confidence 999999999986 6899999999999999875 3444455789999999988776443
No 409
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=1.4e-14 Score=121.90 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=48.7
Q ss_pred cCCCChhHHHHHHHHHHHcc----CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 180 MQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~----~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
...+|+|+++++++++++.. +|+++++|||++++|+.. +.++ ..+.++|+++|..++...+++
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~-~~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER-TKNAQFIVISLRNNMFELADR 198 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECcHHHHHhCCE
Confidence 44579999999999999964 489999999999999876 2333 346688888898876665444
No 410
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=99.57 E-value=9.3e-15 Score=131.49 Aligned_cols=214 Identities=21% Similarity=0.249 Sum_probs=147.5
Q ss_pred HhcCCCCCCeEEEEEecCCCcEEEEeccCCce---eccccCCCHHHHHHHHHHhc---ccCCCceeEEc--Cc-e-----
Q 025371 19 LQNDSKRGQLLEVILDLGRLPEARYLGEFGGK---YLRSTEVSVEELEYAQSAVG---EFGGDNRAGIE--GT-L----- 84 (254)
Q Consensus 19 l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~---~~~~~~~~~~~--~~-~----- 84 (254)
+++++ +++.-.+|++.|-||.. ..|+.|.+ .+.+.|++.++++++++.+- ..+.+....++ |. .
T Consensus 142 ie~fF-d~~TMSvHLKeg~~P~a-K~GkpG~~k~v~l~d~pl~~~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn 219 (604)
T COG1855 142 IEEFF-DEETMSVHLKEGVPPMA-KKGKPGEWKLVRLSDKPLTREELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRN 219 (604)
T ss_pred HHHhc-CCcceEEeeccCCCccc-ccCCCCcEEEEEcCCccCCHHHHHHHHHHHHHHHhhCcCceEEEccCCceEEEecc
Confidence 44444 36777899999999999 56666533 35578999999999887652 22334444443 21 1
Q ss_pred eEEeEEecCCCcEEEEEEEECcee-------ecchhhhhcc-ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE
Q 025371 85 HRISAIRSRKGAIVGLTCRVGRAV-------SGHIDMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (254)
Q Consensus 85 ~Rv~~~~~~~g~~~~l~ir~~~~~-------~~~~~~l~~~-i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~ 156 (254)
+|+.+.++|... .+.+..-+.+ ++..+-+..- .+..+.++|.||||+|||||..+++.++... |+-+-+
T Consensus 220 ~RIvIarPPfSd--~~EITavRPvvk~~ledY~L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~~-GkiVKT 296 (604)
T COG1855 220 YRIVIARPPFSD--RWEITAVRPVVKLSLEDYGLSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYASQ-GKIVKT 296 (604)
T ss_pred EEEEEecCCCCC--ceEEEEEeeeEEechhhcCCCHHHHHHHHhhhcceEEecCCCCChhHHHHHHHHHHHhc-CcEEee
Confidence 799999999543 4444332222 2222333332 4456789999999999999999999999865 777778
Q ss_pred EcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhh
Q 025371 157 VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 157 ~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~ 236 (254)
++.++.+.....+ .++.-+.+.+.. .-...|..+||+=|.||.+...|...+..+.-.|.+++.+.|+..
T Consensus 297 mEsPRDl~v~~eI--------TQYs~l~g~me~--t~DiLLLvRPDYTIyDEmR~t~DF~vyaDmRLAGVGMVGVVHATr 366 (604)
T COG1855 297 MESPRDLQVSPEI--------TQYSPLEGDMEK--TADILLLVRPDYTIYDEMRKTEDFQVYADLRLAGVGMVGVVHATR 366 (604)
T ss_pred ccCcccccCChhh--------hhcccccCchhh--hccEEEEecCCceehhhhhcccceEEeeeeecccCceEeEEecCC
Confidence 8888777432111 223333333321 112345679999999999998888888888888999999999999
Q ss_pred HHHHhCChhhh
Q 025371 237 LENIIKNPILS 247 (254)
Q Consensus 237 ~~~~~~~~~~~ 247 (254)
+.++++|.+=+
T Consensus 367 pIDAiQR~igR 377 (604)
T COG1855 367 PIDAIQRFIGR 377 (604)
T ss_pred hhHHHHHhhcc
Confidence 99998876533
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.57 E-value=9.9e-15 Score=121.78 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=71.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccC-cCCCCeEEEEcCCCccccCCC-CCcccc--ccccccCCCChhHHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTSNEIGGDGD-IPHSAI--GTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-~~~~~~i~~~~~~~ei~~~~~-~~~~~~--~~~~~~~~~s~g~~~~~~l~ 194 (254)
+..|+.++|+|||||||||||++|++..- ...+..+ ......+.+... ..+... .........+.++++ ....
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~-l~~i 102 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLE-LKEI 102 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEecCcccccCCceeHHHHHHH-HHHH
Confidence 56778999999999999999999994321 1111100 001111111000 000000 000112222344444 4555
Q ss_pred HHHccCCCEEEEeCCCchHHHHH--------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~--------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
.++..+|+++|+|||++++|+.. +..+.+.+.++|+++|..++.+.++
T Consensus 103 ~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 103 LSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPE 158 (202)
T ss_pred HHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhh
Confidence 66678999999999999888753 2233456889999999988887765
No 412
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=1.7e-14 Score=146.08 Aligned_cols=146 Identities=12% Similarity=0.162 Sum_probs=103.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------------------EE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------------------IV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------------------~~ 157 (254)
..++++||....+..++.+++.|++||.++|+|.||||||||.++|-++..+.. ++|. ++
T Consensus 1141 f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~-G~I~IDgvdI~~igL~dLRsrlsII 1219 (1381)
T KOG0054|consen 1141 FEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE-GEILIDGVDISKIGLHDLRSRLSII 1219 (1381)
T ss_pred EEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC-CeEEEcCeecccccHHHHHhcCeee
Confidence 468999998877778999999999999999999999999999999999999763 3332 22
Q ss_pred cCCCccccCC---CC-Cccc------ccc---------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 158 DTSNEIGGDG---DI-PHSA------IGT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 158 ~~~~ei~~~~---~~-~~~~------~~~---------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
+|.+-+.... ++ |... +.. ...-...|-||+|.+++||||..+.++|+|
T Consensus 1220 PQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1220 PQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred CCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 2222111100 00 0000 000 001112488999999999999999999999
Q ss_pred eCCCchHHHHH---HHHHH-h--CCceEEEEEchhhHHHHhCC
Q 025371 207 DEIGTEAEAHA---CRSIA-E--RGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 207 DEp~~~ld~~~---~~~~~-~--~G~~vi~t~H~~~~~~~~~~ 243 (254)
||.|+..|..+ +.+.. + .+.||+++.|..+-.-.+++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~Dr 1342 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDR 1342 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCe
Confidence 99999988875 22222 2 37899999998664444443
No 413
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=1.5e-14 Score=124.46 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=51.3
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 181 QVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~----P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
..+|+|+++++++++++..+ |+++|+|||++++|... +.++.+.|.++|+++|+.++....++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~ 227 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADA 227 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCe
Confidence 44699999999999999864 89999999999999864 44444558899999999887765443
No 414
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.55 E-value=4.6e-14 Score=117.49 Aligned_cols=64 Identities=8% Similarity=-0.091 Sum_probs=50.5
Q ss_pred ccCCCChhHHHHHHHHHHH----ccCCCEEEEeCCCchHHHHH-------HHHHHhC--C-ceEEEEEchhhHHHHhC
Q 025371 179 RMQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEAHA-------CRSIAER--G-VMLIGTAHGEWLENIIK 242 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al----~~~P~viilDEp~~~ld~~~-------~~~~~~~--G-~~vi~t~H~~~~~~~~~ 242 (254)
....+|+|+++++++++++ ..+|+++|+|||++++|... +.++.+. + .++++++|..+....++
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d 183 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSD 183 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccccc
Confidence 4556799999999999999 58999999999999999875 3343332 3 58999999977666554
No 415
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=6.3e-14 Score=142.04 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=95.9
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-----CeEEEEcCCCccc---------cCCCCCcccc--
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIG---------GDGDIPHSAI-- 174 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-----~~i~~~~~~~ei~---------~~~~~~~~~~-- 174 (254)
.++++++.+++|+.++|+|+.|||||+||.+|.|.++...| +.+.++.|.+=+. +...+.....
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~ 615 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDK 615 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHH
Confidence 68889999999999999999999999999999999987643 2344555432111 1000000000
Q ss_pred ----------------cc----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH----HHHHH---hCCce
Q 025371 175 ----------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----CRSIA---ERGVM 227 (254)
Q Consensus 175 ----------------~~----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~----~~~~~---~~G~~ 227 (254)
+. -.+--.+|||||||+.+|||.-++.|+.++|.|.+++|+.. +.++. -.++|
T Consensus 616 Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT 695 (1381)
T KOG0054|consen 616 VIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKT 695 (1381)
T ss_pred HHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCE
Confidence 00 02223469999999999999999999999999999999987 22222 34789
Q ss_pred EEEEEchhhHHHHhCC
Q 025371 228 LIGTAHGEWLENIIKN 243 (254)
Q Consensus 228 vi~t~H~~~~~~~~~~ 243 (254)
+|.+||...+....+.
T Consensus 696 ~ILVTHql~~L~~ad~ 711 (1381)
T KOG0054|consen 696 VILVTHQLQFLPHADQ 711 (1381)
T ss_pred EEEEeCchhhhhhCCE
Confidence 9999998776665543
No 416
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.52 E-value=8.4e-15 Score=117.31 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=84.2
Q ss_pred hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC------ccc----cC--C-------------
Q 025371 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN------EIG----GD--G------------- 167 (254)
Q Consensus 113 ~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~------ei~----~~--~------------- 167 (254)
..++..+..|+++-++||||||||||+..++|+++.. +.|.+-..+- |++ |. .
T Consensus 16 ~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s--Gsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS--GSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred cccccccccceEEEEECCCCccHHHHHHHHhCCCCCC--ceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 3455668899999999999999999999999999863 3444332211 110 00 0
Q ss_pred --CCCccccc---------------cccccCCCChhHHHHHHHHHHHcc-----CC--CEEEEeCCCchHHHHH------
Q 025371 168 --DIPHSAIG---------------TARRMQVPEPSLQHKVMIEAVENH-----MP--EVIIVDEIGTEAEAHA------ 217 (254)
Q Consensus 168 --~~~~~~~~---------------~~~~~~~~s~g~~~~~~l~~al~~-----~P--~viilDEp~~~ld~~~------ 217 (254)
..|..... ..+.+..+|||+.||+-+|....+ +| +++++|||.+++|...
T Consensus 94 ~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr 173 (248)
T COG4138 94 TLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 (248)
T ss_pred hhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence 00000000 013334569999999988887653 33 6899999999999754
Q ss_pred -HHHHHhCCceEEEEEchhh
Q 025371 218 -CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 218 -~~~~~~~G~~vi~t~H~~~ 236 (254)
+.+++..|.+||++.|+.+
T Consensus 174 ll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred HHHHHHhCCcEEEEeccchh
Confidence 6677889999999999965
No 417
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.51 E-value=4e-14 Score=125.89 Aligned_cols=125 Identities=11% Similarity=0.193 Sum_probs=87.9
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC------Ccc-------c-----cCC-----C
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEI-------G-----GDG-----D 168 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~------~ei-------~-----~~~-----~ 168 (254)
+..++..+++||++.|+|.||||||||++.+.|+..|+.|+ |..-+.+ .+. . ++. .
T Consensus 339 vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~-I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~ 417 (546)
T COG4615 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG 417 (546)
T ss_pred ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc-eeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence 45677789999999999999999999999999999998554 3332211 000 0 000 0
Q ss_pred CCccc-cc-cc-------------cc--cCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH--------HHHHHh
Q 025371 169 IPHSA-IG-TA-------------RR--MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAE 223 (254)
Q Consensus 169 ~~~~~-~~-~~-------------~~--~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--------~~~~~~ 223 (254)
.+.+. +. .. .+ ...+|.||++|.++-.|+..+-|++++||=.+..|+.- +-.+++
T Consensus 418 ~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~ 497 (546)
T COG4615 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKE 497 (546)
T ss_pred CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHH
Confidence 00000 00 00 00 11258999999999999999999999999988888754 334567
Q ss_pred CCceEEEEEchhhH
Q 025371 224 RGVMLIGTAHGEWL 237 (254)
Q Consensus 224 ~G~~vi~t~H~~~~ 237 (254)
.|+|++.++|+.-.
T Consensus 498 qGKTI~aIsHDd~Y 511 (546)
T COG4615 498 QGKTIFAISHDDHY 511 (546)
T ss_pred hCCeEEEEecCchh
Confidence 89999999998653
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.50 E-value=1.1e-13 Score=125.09 Aligned_cols=127 Identities=21% Similarity=0.247 Sum_probs=91.4
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--EEc------CCCccc------------------cCCCCCcc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--IVD------TSNEIG------------------GDGDIPHS 172 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--~~~------~~~ei~------------------~~~~~~~~ 172 (254)
.++|+.++|+|+||.||||.++.|+|.+.|+.+..-. -.+ ...|+. +...+|..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 5689999999999999999999999999987543100 000 000000 00000000
Q ss_pred ---cc----------c--------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------H
Q 025371 173 ---AI----------G--------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 218 (254)
Q Consensus 173 ---~~----------~--------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~ 218 (254)
.+ + ..+.+..+|||+-||+++|+++..+.|+.++|||++-+|... +
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~I 256 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHH
Confidence 00 0 013444579999999999999999999999999999999764 6
Q ss_pred HHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 219 RSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 219 ~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+++++.++.||++.|+..+.+.+.+.+
T Consensus 257 rel~~~~k~ViVVEHDLavLD~lsD~v 283 (591)
T COG1245 257 RELAEDGKYVIVVEHDLAVLDYLSDFV 283 (591)
T ss_pred HHHhccCCeEEEEechHHHHHHhhhee
Confidence 677777999999999999999887653
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.50 E-value=9.8e-14 Score=115.63 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=65.6
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCc-CCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD-EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~-~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al 197 (254)
+..|++++|+||||||||||+|.|++...- ..+..+-- ....+.....++.......-... .|.-.....-+..++
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a--~~~~~q~~~l~~~~~~~d~l~~~-~s~~~~e~~~~~~iL 98 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA--SSFELPPVKIFTSIRVSDDLRDG-ISYFYAELRRLKEIV 98 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec--CccCcccceEEEeccchhccccc-cChHHHHHHHHHHHH
Confidence 455789999999999999999999986631 11221110 00001000000110000000000 111111111123333
Q ss_pred c----cCCCEEEEeCCCchHHHHH--------HHHHHhCCceEEEEEchhhHHHHh
Q 025371 198 N----HMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 198 ~----~~P~viilDEp~~~ld~~~--------~~~~~~~G~~vi~t~H~~~~~~~~ 241 (254)
. .+|+++++|||++++|... +..+.+.|.++|+++|..+....+
T Consensus 99 ~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 99 EKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 2 3899999999999888653 233445688999999998877766
No 420
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=2.6e-14 Score=142.46 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=93.8
Q ss_pred eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-----------------CCCeEEEEcCCCc-cc-----
Q 025371 108 VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----------------FQKRVVIVDTSNE-IG----- 164 (254)
Q Consensus 108 ~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-----------------~~~~i~~~~~~~e-i~----- 164 (254)
....+++++..+++|...+|+|++|+||||||+.|+|...-. ..+++.+++|..- ++
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 344688888899999999999999999999999999975421 0112223332110 00
Q ss_pred ----cCC--CCCccc-c-------------ccc-----cccCC----CChhHHHHHHHHHHHccCC-CEEEEeCCCchHH
Q 025371 165 ----GDG--DIPHSA-I-------------GTA-----RRMQV----PEPSLQHKVMIEAVENHMP-EVIIVDEIGTEAE 214 (254)
Q Consensus 165 ----~~~--~~~~~~-~-------------~~~-----~~~~~----~s~g~~~~~~l~~al~~~P-~viilDEp~~~ld 214 (254)
+.. ..|+.. . ..+ .-++. +|..|++|..|+-=|..+| .+|+||||+++||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD 962 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD 962 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence 000 000000 0 000 01112 4778888998998899999 8999999999999
Q ss_pred HHH-------HHHHHhCCceEEEEEchhh--HHHHhCChhh
Q 025371 215 AHA-------CRSIAERGVMLIGTAHGEW--LENIIKNPIL 246 (254)
Q Consensus 215 ~~~-------~~~~~~~G~~vi~t~H~~~--~~~~~~~~~~ 246 (254)
+.+ +++++.+|.+|++|.|.++ +-+.+++..+
T Consensus 963 sqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL 1003 (1391)
T KOG0065|consen 963 SQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL 1003 (1391)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH
Confidence 886 6677889999999999854 5566665544
No 421
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=4.6e-13 Score=113.43 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=79.6
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC------cCCCCeEEEEcCCCccccCCCCCccccccccccCCCCh
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS------DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP 185 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~------~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~ 185 (254)
+++++.....+++++|+|||||||||+++.++-..- +-.... ..+....++. ...... ......+|.
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~-~~~~~~~~il-----~~~~l~-d~~~~~lS~ 92 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDS-ADIPIVDCIL-----ARVGAS-DSQLKGVST 92 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCccc-EEEeccceeE-----eeeccc-cchhcCcCh
Confidence 556666666788999999999999999999763210 000110 1111111110 000000 011344688
Q ss_pred hHHHHHHHHHHH--ccCCCEEEEeCC---CchHHHHHH-----HHHHh-CCceEEEEEchhhHHHHhCC
Q 025371 186 SLQHKVMIEAVE--NHMPEVIIVDEI---GTEAEAHAC-----RSIAE-RGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 186 g~~~~~~l~~al--~~~P~viilDEp---~~~ld~~~~-----~~~~~-~G~~vi~t~H~~~~~~~~~~ 243 (254)
+++++..+++++ ..+|+++|+||| ++++|..++ ..+.+ .|.++|++||..++.+.+++
T Consensus 93 ~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 93 FMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 899999898888 689999999999 788887652 33443 47899999998776665543
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=1.7e-13 Score=114.55 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=77.6
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-CCccccCC----CCCccccccccccCCCChh
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGDG----DIPHSAIGTARRMQVPEPS 186 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-~~ei~~~~----~~~~~~~~~~~~~~~~s~g 186 (254)
+++++.....|+.++|+||||+||||+++.++++.--..-+ .+++. ..++.... ...... ...+....++.+
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G--~~vpa~~~~l~~~d~I~~~~~~~d-~~~~~~S~fs~e 95 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG--CFVPAEYATLPIFNRLLSRLSNDD-SMERNLSTFASE 95 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC--CCcchhhcCccChhheeEecCCcc-ccchhhhHHHHH
Confidence 56667777888999999999999999999998654211000 00000 00110000 000000 001122334667
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCchHHHHH--------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 187 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 187 ~~~~~~l~~al~~~P~viilDEp~~~ld~~~--------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
+++. .....+..+|+++++|||+.+.|+.. +..+.+.|.++|++||..++.+.+.
T Consensus 96 ~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 96 MSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 7754 34455678999999999977665432 4455567899999999988888765
No 423
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.3e-13 Score=125.90 Aligned_cols=148 Identities=13% Similarity=0.076 Sum_probs=99.8
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC-----------
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------- 166 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~----------- 166 (254)
..++++|....+.....+...++....++++|+||+||||+++.+.+-..|.. .++.+..+..+.+.
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r--gi~~~~~r~ri~~f~Qhhvd~l~~~ 443 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR--GIVGRHPRLRIKYFAQHHVDFLDKN 443 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc--ceeeecccceecchhHhhhhHHHHH
Confidence 34455554433223444555566667899999999999999999999887642 22222222111110
Q ss_pred --------CCC---Ccccc-------c-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH--
Q 025371 167 --------GDI---PHSAI-------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI-- 221 (254)
Q Consensus 167 --------~~~---~~~~~-------~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~-- 221 (254)
... +...+ + ....+..+||||+-|+++|.+...+|.+|+||||++.+|.+++..+
T Consensus 444 v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~ 523 (582)
T KOG0062|consen 444 VNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAK 523 (582)
T ss_pred hHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHH
Confidence 000 11000 0 0123455799999999999999999999999999999998874443
Q ss_pred --HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 222 --AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 222 --~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
.+-+-+||+++|+.++.+.+++.+..
T Consensus 524 Al~~F~GGVv~VSHd~~fi~~~c~E~Wv 551 (582)
T KOG0062|consen 524 ALKNFNGGVVLVSHDEEFISSLCKELWV 551 (582)
T ss_pred HHHhcCCcEEEEECcHHHHhhcCceeEE
Confidence 34466899999999999999887654
No 424
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=6.7e-13 Score=131.83 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHHHcc---CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 182 VPEPSLQHKVMIEAVENH---MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 182 ~~s~g~~~~~~l~~al~~---~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|+|++||+.++++|.. +|+++|+|||++++|... +.++.+.|+++|+++|+.+.... .+.++
T Consensus 828 tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~-aD~ii 901 (924)
T TIGR00630 828 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKT-ADYII 901 (924)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-CCEEE
Confidence 359999999999999996 599999999999999876 44455679999999999887764 44443
No 425
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.42 E-value=9.9e-13 Score=136.59 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCChhHHHHHHHHHHHc---cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 182 VPEPSLQHKVMIEAVEN---HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 182 ~~s~g~~~~~~l~~al~---~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|+||+||+.++++|. .+|+++|+|||++++|... +.++.+.|+++|+++|+.+..+ +.+.++
T Consensus 809 tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~-~aDrVi 882 (1809)
T PRK00635 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVK-VADYVL 882 (1809)
T ss_pred cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEE
Confidence 45999999999999997 6999999999999999876 4455567999999999988774 555543
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.41 E-value=1.1e-12 Score=107.96 Aligned_cols=109 Identities=15% Similarity=0.256 Sum_probs=63.6
Q ss_pred EEEECCCCCCHHHHHHHHHh-ccCcCCC-------CeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHH
Q 025371 125 ILFVGRPGVGKTTVMREIAR-VLSDEFQ-------KRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 125 ~~i~G~~GsGKTTLl~~l~g-~~~~~~~-------~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~a 196 (254)
++|+||||+||||+++.++- .+....| .++.++++ +....... ... ......+|.++++ ++++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~---il~~~~~~-d~~--~~~~s~fs~~~~~---l~~~ 72 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDR---IFTRIGAS-DSL--AQGLSTFMVEMKE---TANI 72 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccce---EEEEeCCC-Cch--hccccHHHHHHHH---HHHH
Confidence 68999999999999999982 2211111 11111111 10000000 000 0122233444443 5555
Q ss_pred Hcc--CCCEEEEeCCCchHHHHH--------HHHHHhC-CceEEEEEchhhHHHHhC
Q 025371 197 ENH--MPEVIIVDEIGTEAEAHA--------CRSIAER-GVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 197 l~~--~P~viilDEp~~~ld~~~--------~~~~~~~-G~~vi~t~H~~~~~~~~~ 242 (254)
+.. +|+++++|||++++|+.. +..+.+. |.++|++||..++.+.++
T Consensus 73 l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 73 LKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred HHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 555 999999999999888753 2334453 889999999988777654
No 427
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.40 E-value=1.9e-12 Score=128.86 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 182 VPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 182 ~~s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+|+|++||+.++++|..+| +++|+|||++++|... +.++.+.|+++|+++|+.+.... .+.++
T Consensus 830 tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~-aD~ii 903 (943)
T PRK00349 830 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKT-ADWII 903 (943)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh-CCEEE
Confidence 45999999999999999999 9999999999999876 44555679999999999887764 44443
No 428
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.40 E-value=1.6e-12 Score=109.74 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=70.2
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc-CCCccccCC-CCCccccccccccCCCChhHHH
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-TSNEIGGDG-DIPHSAIGTARRMQVPEPSLQH 189 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~-~~~ei~~~~-~~~~~~~~~~~~~~~~s~g~~~ 189 (254)
+++++..... ++++|+|||||||||+|+.+++..-....+ ..++ ....+.+.. .+++.. ..+..+.|++.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g--~~vp~~~~~i~~~~~i~~~~~-----~~~~ls~g~s~ 92 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIG--SFVPASKAEIGVVDRIFTRIG-----ASDDLAGGRST 92 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccC--CeeccccceecceeeEeccCC-----chhhhccCcch
Confidence 4444444443 789999999999999999998643221000 1111 111111100 011111 11222333332
Q ss_pred ----HHHHHHHHc--cCCCEEEEeCC---CchHHHHH-----HHHHHhC-CceEEEEEchhhHHHHhC
Q 025371 190 ----KVMIEAVEN--HMPEVIIVDEI---GTEAEAHA-----CRSIAER-GVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 190 ----~~~l~~al~--~~P~viilDEp---~~~ld~~~-----~~~~~~~-G~~vi~t~H~~~~~~~~~ 242 (254)
...++.++. .+|+++++||| ++.+|... +..+.+. +.++|++||..++.+..+
T Consensus 93 f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 93 FMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEG 160 (216)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhh
Confidence 234555554 69999999999 88888654 3334455 789999999987766554
No 429
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.38 E-value=2.7e-12 Score=108.03 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=41.6
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEEeCCCchHHHHH-------HHHHHhC-C-ceEEEEEchh
Q 025371 181 QVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEAHA-------CRSIAER-G-VMLIGTAHGE 235 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al----~~~P~viilDEp~~~ld~~~-------~~~~~~~-G-~~vi~t~H~~ 235 (254)
..+|+|++|+..+++++ ..+|+++++|||++++|+.. +.++.+. | .++|+++|..
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~ 192 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL 192 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh
Confidence 35699999987766554 47999999999999999875 3344444 5 4688888774
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=5.7e-12 Score=106.10 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=67.8
Q ss_pred cEEEEECCCCCCHHHHHHHHHh--ccCcCCCCeEEEEcCCCccccCCCCCccccccc-cccCCCC--hhHHHHHHHHHHH
Q 025371 123 KSILFVGRPGVGKTTVMREIAR--VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRMQVPE--PSLQHKVMIEAVE 197 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g--~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~-~~~~~~s--~g~~~~~~l~~al 197 (254)
..++|+||||+||||||+.++. .+.. .|.. +.. ....+.+...... .+... ......| ..+-+++.+++++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~-~G~~-v~a-~~~~~~~~d~i~~-~l~~~~si~~~~S~f~~el~~l~~~l~~ 105 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH-IGSF-VPA-DSATIGLVDKIFT-RMSSRESVSSGQSAFMIDLYQVSKALRL 105 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh-CCCe-eEc-CCcEEeeeeeeee-eeCCccChhhccchHHHHHHHHHHHHHh
Confidence 6799999999999999999983 2221 1221 111 1111111000000 00000 0001112 2345677788888
Q ss_pred ccCCCEEEEeCCCchHHHHH--------HHHHHhCC---ceEEEEEchhhHHHHhC
Q 025371 198 NHMPEVIIVDEIGTEAEAHA--------CRSIAERG---VMLIGTAHGEWLENIIK 242 (254)
Q Consensus 198 ~~~P~viilDEp~~~ld~~~--------~~~~~~~G---~~vi~t~H~~~~~~~~~ 242 (254)
..+|+++++|||+++.|... +.++.+.| .++|++||..++.+.+.
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 89999999999999887532 34444442 47999999988777653
No 431
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.37 E-value=3.4e-12 Score=104.88 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=90.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----------Ccccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGG 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----------~ei~~ 165 (254)
+.++++.|.... +..-+++..++.|...+++|.|||||||||+.|+|----. + .++.+... ..+.|
T Consensus 16 vsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~-~-~~v~VlgrsaFhDt~l~~Sgdl~Y 92 (291)
T KOG2355|consen 16 VSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG-G-GVVQVLGRSAFHDTSLESSGDLSY 92 (291)
T ss_pred EeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc-C-CeEEEcCcCccccccccccCceeE
Confidence 345666664433 2455677778999999999999999999999999965432 2 22222110 00111
Q ss_pred C-----------CCCCcc-ccc--------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 166 D-----------GDIPHS-AIG--------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 166 ~-----------~~~~~~-~~~--------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
. ..+|-+ .+. ...++.-.|.||++|+.+..-|.+.-+++++|
T Consensus 93 LGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLD 172 (291)
T KOG2355|consen 93 LGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 172 (291)
T ss_pred ecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEee
Confidence 0 111110 000 00122234999999999999999999999999
Q ss_pred CCCchHHHHH---HHH-----HHhCCceEEEEEchhhHHHHh
Q 025371 208 EIGTEAEAHA---CRS-----IAERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 208 Ep~~~ld~~~---~~~-----~~~~G~~vi~t~H~~~~~~~~ 241 (254)
|.+-.+|..+ +.+ .-++|.|+++.||-.+=.+.+
T Consensus 173 EVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~W 214 (291)
T KOG2355|consen 173 EVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETW 214 (291)
T ss_pred eeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhc
Confidence 9999999766 222 224699999999975433333
No 432
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9.5e-13 Score=118.60 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=96.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhc---cCcCCCCeEEEEcC------CCccccC-
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV---LSDEFQKRVVIVDT------SNEIGGD- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~---~~~~~~~~i~~~~~------~~ei~~~- 166 (254)
+.+++|....... +..-+..|-.|..++++||||-||||||+-|+.. ++|+ -.+.+.++ ...+...
T Consensus 267 iEnF~ISA~Gk~L--FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--IDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 267 IENFDISAQGKLL--FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--IDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred eeeeeeeccccee--eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC--CceEeeeeeeeecCcHHHHHHH
Confidence 4455555433332 4445566888999999999999999999999853 3442 22333222 1000000
Q ss_pred -----------------CCCC------cc----------cc---------------------ccccccCCCChhHHHHHH
Q 025371 167 -----------------GDIP------HS----------AI---------------------GTARRMQVPEPSLQHKVM 192 (254)
Q Consensus 167 -----------------~~~~------~~----------~~---------------------~~~~~~~~~s~g~~~~~~ 192 (254)
..+. .. .+ ...+...-+|||.++|+.
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 0000 00 00 001333446999999999
Q ss_pred HHHHHccCCCEEEEeCCCchHHHHHH---HHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 193 IEAVENHMPEVIIVDEIGTEAEAHAC---RSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~ld~~~~---~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+||||-+.|.+|++|||++.+|..+. .... -..+|+++++|+.++.+.++..+++
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIH 481 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIH 481 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhh
Confidence 99999999999999999999998762 2222 2357999999999999988877765
No 433
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.7e-12 Score=118.77 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=92.3
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE--------------------EEcC-CCccccC--C
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------IVDT-SNEIGGD--G 167 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------~~~~-~~ei~~~--~ 167 (254)
..+++++.+++||+++|.|--|||+|-|+++|.|..++. .+.+. ++.+ +..-+.. .
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~-~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS-SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC-CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 367888999999999999999999999999999977654 22222 2211 1100000 0
Q ss_pred ------CCC---c-cc--cc----------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 168 ------DIP---H-SA--IG----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 168 ------~~~---~-~~--~~----------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
..+ . .. +. .......+|||.||++.+++.|..+|++||+||||.+.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 000 0 00 00 01233456999999999999999999999999999998
Q ss_pred HHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 214 EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 214 d~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|.-+ +.+++..|+++|+++....-.-.++++++
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 8644 67788899998888877443443444443
No 434
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.32 E-value=2.6e-12 Score=115.14 Aligned_cols=131 Identities=20% Similarity=0.312 Sum_probs=91.9
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc--------CCCCeEEEEcC------CC----ccccCC-----
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD--------EFQKRVVIVDT------SN----EIGGDG----- 167 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~--------~~~~~i~~~~~------~~----ei~~~~----- 167 (254)
.+.++++.+++|+.++|+|++||||||+|+.|+|.... ++| .+-+..+ +. ++....
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg-~v~vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSG-KVEVPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCC-ceeccccchhhccCcccccccCchhHHHHH
Confidence 46788888999999999999999999999999997652 212 1111110 00 111000
Q ss_pred -CCCcc---cc------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHH-------HHHH-h
Q 025371 168 -DIPHS---AI------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIA-E 223 (254)
Q Consensus 168 -~~~~~---~~------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~-------~~~~-~ 223 (254)
..+.. +. ...+.+.-+|.||+.+.-||.+++.+|.++++||-.+.+|..++ .+++ +
T Consensus 477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 00000 00 00134455799999999999999999999999999999997763 3333 4
Q ss_pred CCceEEEEEchhhHHHHhC
Q 025371 224 RGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 224 ~G~~vi~t~H~~~~~~~~~ 242 (254)
.|.|+++++|..++.++++
T Consensus 557 ~giTlivvThrpEv~~AL~ 575 (593)
T COG2401 557 AGITLIVVTHRPEVGNALR 575 (593)
T ss_pred hCCeEEEEecCHHHHhccC
Confidence 5999999999999999884
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=2.1e-11 Score=103.13 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=71.2
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHh-ccCcCCCCeEEEEcCCCccccCCCCCccccccccc-cCCCChhHHH
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR-MQVPEPSLQH 189 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g-~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~-~~~~s~g~~~ 189 (254)
+++++..+..|+.++|+||||+||||+++.+++ .+.+..|. .+.- ....+.+...+.. .++.... ..-.|.-...
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~-~v~a-~~~~~~~~~~i~~-~~~~~d~~~~~~StF~~e 97 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS-FVPA-SSATLSIFDSVLT-RMGASDSIQHGMSTFMVE 97 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC-EEEc-CceEEeccceEEE-EecCccccccccchHHHH
Confidence 556666788899999999999999999999999 44443232 1111 1112211100000 0000000 0111211111
Q ss_pred HHHHHHHH--ccCCCEEEEeCCCchH---HHHH-----HHHHHhC-CceEEEEEchhhHHHHhC
Q 025371 190 KVMIEAVE--NHMPEVIIVDEIGTEA---EAHA-----CRSIAER-GVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 190 ~~~l~~al--~~~P~viilDEp~~~l---d~~~-----~~~~~~~-G~~vi~t~H~~~~~~~~~ 242 (254)
-..++.++ ..+|+++|+|||+.+. |..+ +..+.+. +.++|++||..++.+...
T Consensus 98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~ 161 (222)
T cd03287 98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILR 161 (222)
T ss_pred HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHH
Confidence 11222332 3579999999996543 3322 4445565 789999999988877653
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.23 E-value=1.3e-11 Score=121.21 Aligned_cols=121 Identities=13% Similarity=0.175 Sum_probs=74.8
Q ss_pred cccCC-cEEEEECCCCCCHHHHHHHHHhc-cCcCCCCeEEEEcCCCccccCCCCC---ccccccccccCCCChhHHHHHH
Q 025371 118 LLHYG-KSILFVGRPGVGKTTVMREIARV-LSDEFQKRVVIVDTSNEIGGDGDIP---HSAIGTARRMQVPEPSLQHKVM 192 (254)
Q Consensus 118 ~i~~g-~~~~i~G~~GsGKTTLl~~l~g~-~~~~~~~~i~~~~~~~ei~~~~~~~---~~~~~~~~~~~~~s~g~~~~~~ 192 (254)
.+..+ +.++|+||||+||||||+.+++. +.+..|..+ .......+.+..... ...-........+|+++++...
T Consensus 317 ~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~V-pa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 317 NLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPI-PANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred EeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCc-cCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 35555 78999999999999999999988 333222111 001111121110000 0000011234456788887766
Q ss_pred HHHHHccCCCEEEEeCCCchHHHHH--------HHHHHhCCceEEEEEchhhHHHH
Q 025371 193 IEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~ld~~~--------~~~~~~~G~~vi~t~H~~~~~~~ 240 (254)
+...+ ..|+++|+|||+++.|+.. +..+.+.|.++|+|||..++...
T Consensus 396 il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 396 ILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred HHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 65554 6899999999999888654 33445678999999999876543
No 437
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.21 E-value=2.2e-11 Score=100.58 Aligned_cols=145 Identities=21% Similarity=0.229 Sum_probs=91.0
Q ss_pred EEEEEEEECc--eeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc-----CC---------
Q 025371 97 IVGLTCRVGR--AVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----TS--------- 160 (254)
Q Consensus 97 ~~~l~ir~~~--~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~-----~~--------- 160 (254)
+.+++|.+.. ......+.++..+.+||+-+++|.+|||||-..++|+|....+ -+ ++-| +-
T Consensus 6 IrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn--W~-vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 6 IRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN--WR-VTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc--eE-EEhhhcccccchhhcCChHH
Confidence 3455655422 2234567788889999999999999999999999999988753 11 1111 00
Q ss_pred ------CccccCCCCCc------ccccc-----------------------------ccccC-------------CCChh
Q 025371 161 ------NEIGGDGDIPH------SAIGT-----------------------------ARRMQ-------------VPEPS 186 (254)
Q Consensus 161 ------~ei~~~~~~~~------~~~~~-----------------------------~~~~~-------------~~s~g 186 (254)
.++....+-|. ..++. ..+++ .+..|
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeG 162 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEG 162 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccC
Confidence 00000000000 00000 00111 12578
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCchHHHHH---HHHH----H-hCCceEEEEEchhhHHHHhCCh
Q 025371 187 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRSI----A-ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 187 ~~~~~~l~~al~~~P~viilDEp~~~ld~~~---~~~~----~-~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
+-|++++|.|++..|+++|.|||++.+++.. +.++ . ++|.+++.++|+.....-.++.
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~ 228 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK 228 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhh
Confidence 8999999999999999999999999887654 2222 1 4588999999995555544443
No 438
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=1.1e-10 Score=101.99 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEeCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhC
Q 025371 183 PEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~~----~P~viilDEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~ 242 (254)
+|+|++|++++++++.. +|+++++|||++++|......+ ...+.++|+++|+.......+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d 240 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMAD 240 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcC
Confidence 59999999999986543 9999999999999998762222 134789999999988765443
No 439
>PRK13695 putative NTPase; Provisional
Probab=99.16 E-value=2.6e-10 Score=92.82 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=68.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-EEcC-----CCccccC--C-------CCCcccc-c---cccccCCCC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVDT-----SNEIGGD--G-------DIPHSAI-G---TARRMQVPE 184 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-~~~~-----~~ei~~~--~-------~~~~~~~-~---~~~~~~~~s 184 (254)
.++|+|++|||||||++.+++.+.+. +..+. ++.+ .....+. . ....... . ..+....+|
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 58899999999999999988766532 33322 2111 0000000 0 0000000 0 001122356
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCc--hHH---HHHHHHHHhCCceEEEEEchhhHHHHhC
Q 025371 185 PSLQHKVMIEAVENHMPEVIIVDEIGT--EAE---AHACRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 185 ~g~~~~~~l~~al~~~P~viilDEp~~--~ld---~~~~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
++++....+.+....+|++|++|||.. .++ ...+.++.+.|.++|+++|.......++
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~ 143 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSVHPFVQ 143 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhhHHHHH
Confidence 677766666666667999999999643 333 2336666678999999999866554443
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.12 E-value=5.7e-10 Score=88.41 Aligned_cols=114 Identities=23% Similarity=0.166 Sum_probs=68.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC--------CCCCccccc-cccccCCCChhHHHHHHHH
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIG-TARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~--------~~~~~~~~~-~~~~~~~~s~g~~~~~~l~ 194 (254)
+++|.|+||+||||+++.+++..... +..+++++........ ......... ..............+...+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 37899999999999999999988653 6777777553322100 000000000 0011111223344455677
Q ss_pred HHHccCCCEEEEeCCCchHHH-------------HH---HHH-HHhCCceEEEEEchhhHH
Q 025371 195 AVENHMPEVIIVDEIGTEAEA-------------HA---CRS-IAERGVMLIGTAHGEWLE 238 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~-------------~~---~~~-~~~~G~~vi~t~H~~~~~ 238 (254)
.+...+|+++|+||+..-.+. .. +.. +.+.++++++++|..+..
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 888899999999999853222 11 222 224588999999986544
No 441
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.12 E-value=7.8e-10 Score=115.44 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHHHccC---CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHh
Q 025371 182 VPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 182 ~~s~g~~~~~~l~~al~~~---P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~ 241 (254)
.+|||+.||.-||.-|..+ +.++|||||+.+|+... +.++.+.|+|||++.|+.++.+..
T Consensus 1699 tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~a 1768 (1809)
T PRK00635 1699 SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQA 1768 (1809)
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhC
Confidence 3499999999999999754 79999999999988765 445668899999999999988874
No 442
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.10 E-value=1.6e-10 Score=113.86 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=73.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC-cCCCCeEEEEcCCCccccCCC----CC-ccccccccccCCCChhHHHHHHHHH
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDTSNEIGGDGD----IP-HSAIGTARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~-~~~~~~i~~~~~~~ei~~~~~----~~-~~~~~~~~~~~~~s~g~~~~~~l~~ 195 (254)
+.+++|+|||++||||+|+.++...- ...|-- +-......+++... +. ...+ ......+|+++++...+.+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~-vpa~~~~~i~~~~~i~~~ig~~~si--~~~lStfS~~m~~~~~Il~ 403 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLP-IPANEPSEIPVFKEIFADIGDEQSI--EQSLSTFSGHMTNIVRILE 403 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCC-cccCCCccccccceEEEecCCccch--hhchhHHHHHHHHHHHHHH
Confidence 45799999999999999999864421 111100 00000111211000 00 0000 1234456788988888877
Q ss_pred HHccCCCEEEEeCCCchHHHHH--------HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 196 VENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 196 al~~~P~viilDEp~~~ld~~~--------~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
++ .+|+++|+|||+++.|+.. +..+.+.|.++|+|||..++.....+
T Consensus 404 ~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~ 458 (782)
T PRK00409 404 KA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYN 458 (782)
T ss_pred hC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhc
Confidence 76 7899999999999888653 23344668899999999887766543
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.06 E-value=1.8e-09 Score=82.53 Aligned_cols=111 Identities=27% Similarity=0.348 Sum_probs=67.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
+..++|+||+||||||+++.|+..+... ...++++.............. ............+....+..+..+....|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999999998764 224555443221110000000 00000112223456667778888888889
Q ss_pred CEEEEeCCCchHHHHHH-------------HHHHhCCceEEEEEch
Q 025371 202 EVIIVDEIGTEAEAHAC-------------RSIAERGVMLIGTAHG 234 (254)
Q Consensus 202 ~viilDEp~~~ld~~~~-------------~~~~~~G~~vi~t~H~ 234 (254)
++|++||+....+.... ......+..+|+++|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 99999999875443321 1122346678888883
No 444
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.05 E-value=1.9e-09 Score=91.85 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=65.9
Q ss_pred ccccCCcEEEEECCCCCCHHHH-HHHHHhccCcCCCCeEEEEcCCC--c--------cccCC--CCCccccccccccCCC
Q 025371 117 DLLHYGKSILFVGRPGVGKTTV-MREIARVLSDEFQKRVVIVDTSN--E--------IGGDG--DIPHSAIGTARRMQVP 183 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTL-l~~l~g~~~~~~~~~i~~~~~~~--e--------i~~~~--~~~~~~~~~~~~~~~~ 183 (254)
.-+++|+.++|.|+|||||||| ++.+++...+ +.++.++.... + +.+.. ......+.........
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 96 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLL 96 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccc
Confidence 3478899999999999999999 6888887665 56666554211 1 11100 0000000000001112
Q ss_pred ChhHHHHHHHHHHHc----cCCCEEEEeCCCchH----HHHH-------HHHHHhCCceEEEEEchh
Q 025371 184 EPSLQHKVMIEAVEN----HMPEVIIVDEIGTEA----EAHA-------CRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 184 s~g~~~~~~l~~al~----~~P~viilDEp~~~l----d~~~-------~~~~~~~G~~vi~t~H~~ 235 (254)
++...++..+.+.+. .+|+++++|||++.+ |... +..+.+.|.++++|+|..
T Consensus 97 ~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 97 SGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 333333434433333 479999999999876 4332 233445688877776644
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=6.5e-10 Score=93.83 Aligned_cols=128 Identities=14% Similarity=0.117 Sum_probs=69.4
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-CCccccCCCCCcccccccccc-CCCChhHHH
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-SNEIGGDGDIPHSAIGTARRM-QVPEPSLQH 189 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-~~ei~~~~~~~~~~~~~~~~~-~~~s~g~~~ 189 (254)
+++++....+++.++|+||||+||||+++.++...--..-+ .+++. ..++.....+. ..++..... .-.|.-+..
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G--~~vpa~~~~i~~~~~i~-~~~~~~d~~~~~~StF~~e 96 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG--MDVPAKSMRLSLVDRIF-TRIGARDDIMKGESTFMVE 96 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC--CccCccccEeccccEEE-EecCcccccccCcchHHHH
Confidence 56677767788999999999999999999998764311000 00100 00111000000 000000000 011221111
Q ss_pred HHHHHHHH--ccCCCEEEEeCCCchHHHHH--------HHHHHhC-CceEEEEEchhhHHHHhC
Q 025371 190 KVMIEAVE--NHMPEVIIVDEIGTEAEAHA--------CRSIAER-GVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 190 ~~~l~~al--~~~P~viilDEp~~~ld~~~--------~~~~~~~-G~~vi~t~H~~~~~~~~~ 242 (254)
-..++.++ ..+|+++++|||+.+.++.. +..+.+. +.++++++|..++...+.
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 12222333 36899999999976544332 4455555 889999999988766653
No 446
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.9e-09 Score=103.61 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHh
Q 025371 183 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~ 241 (254)
+|||+-||+-||.-|..+. .+.|||||+++|-... +.++...|.|||++.|..++.+..
T Consensus 823 LSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~A 891 (935)
T COG0178 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTA 891 (935)
T ss_pred ccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeec
Confidence 3999999999999998766 9999999999877665 445668899999999998766543
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.94 E-value=4.5e-09 Score=85.93 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=65.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc--CCCc-ccc-C--CCCCccc---cc----cccccCCCChhHHH-
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--TSNE-IGG-D--GDIPHSA---IG----TARRMQVPEPSLQH- 189 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~--~~~e-i~~-~--~~~~~~~---~~----~~~~~~~~s~g~~~- 189 (254)
+++|.||||+|||||...++-..... +.++.++. ++.+ +.. . ...+... .+ ........|+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 37899999999999987665433222 56665553 2211 100 0 0000000 00 01112234566655
Q ss_pred -----HHHHHHHHccCCCEEEEeCCCchHH---HH-------HHHHHHhCCceEEEEEchhhH
Q 025371 190 -----KVMIEAVENHMPEVIIVDEIGTEAE---AH-------ACRSIAERGVMLIGTAHGEWL 237 (254)
Q Consensus 190 -----~~~l~~al~~~P~viilDEp~~~ld---~~-------~~~~~~~~G~~vi~t~H~~~~ 237 (254)
......+...+|+++++|||+..++ .. .+..+.+.|.++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 4455555667999999999998776 32 244455679999999997553
No 448
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.94 E-value=1.7e-09 Score=97.49 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=86.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeE-----EEEcCCC--ccccC----------CCCCcccc-----------
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRV-----VIVDTSN--EIGGD----------GDIPHSAI----------- 174 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i-----~~~~~~~--ei~~~----------~~~~~~~~----------- 174 (254)
+++..+|.||.|||||++.++|.+.|+.+..+ .+.++.. +.... ..+-+..+
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie 447 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIE 447 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHH
Confidence 47899999999999999999999988754322 2222210 00000 00000000
Q ss_pred -ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHH-HhCCceEEEEEchhhHHHHhCChh
Q 025371 175 -GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSI-AERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 175 -~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~-~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
...+.++.+|+|+.||++++.++-...|+.++|||.+-+|.+. +.++ ....+|-+.+.|+.-.+..+.+++
T Consensus 448 ~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrv 527 (592)
T KOG0063|consen 448 NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRV 527 (592)
T ss_pred HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhccee
Confidence 0124455679999999999999999999999999999888765 2232 245778999999988888887776
Q ss_pred hh
Q 025371 246 LS 247 (254)
Q Consensus 246 ~~ 247 (254)
+-
T Consensus 528 iv 529 (592)
T KOG0063|consen 528 IV 529 (592)
T ss_pred EE
Confidence 54
No 449
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=5.6e-09 Score=91.01 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHHHc---------cCCCEEEEeCCCchHHHHHHHHH---H-hCCceEEEEEchhhHHHHh
Q 025371 183 PEPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHACRSI---A-ERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~---------~~P~viilDEp~~~ld~~~~~~~---~-~~G~~vi~t~H~~~~~~~~ 241 (254)
+|.|++++..++++++ .+|+++++|||++++|......+ . +.+.++++++|...+...+
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALW 255 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchh
Confidence 4999999999999874 69999999999999998763322 2 3344555555555544433
No 450
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.89 E-value=1.5e-08 Score=92.82 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=96.1
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-------cc--ccCCCCCcccc-------
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------EI--GGDGDIPHSAI------- 174 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-------ei--~~~~~~~~~~~------- 174 (254)
....+++.++.||+++|.|-.|-|-+.|+.+|+|+.++.. ++|.+..... +. .....+|....
T Consensus 273 ~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~-G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS-GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC-ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 3677889999999999999999999999999999987653 4444332211 00 00011111100
Q ss_pred --------------------c------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 175 --------------------G------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 175 --------------------~------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
+ ...+...+|||.+|+..++|=+..+|++||+.+|+
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT 431 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence 0 00122345999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.++|.-+ +.+.++.|..|+.++-+.+..-.+++++.
T Consensus 432 rGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa 474 (501)
T COG3845 432 RGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA 474 (501)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee
Confidence 9999876 55667889999998888665555555543
No 451
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=3e-08 Score=80.70 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHH
Q 025371 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLE 238 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~ 238 (254)
.|.|+..-..+.+.+. +--+.|||||-+++.+.- +.++.+.|..+|+.||+.=+.
T Consensus 130 ~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLl 191 (233)
T COG3910 130 MSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILL 191 (233)
T ss_pred hccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhe
Confidence 4888887777776664 558999999998776643 667778899999999986543
No 452
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.80 E-value=4.1e-09 Score=106.01 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=88.9
Q ss_pred ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC--CeEEEEcC-------CCccccC----CCCCccccc
Q 025371 109 SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ--KRVVIVDT-------SNEIGGD----GDIPHSAIG 175 (254)
Q Consensus 109 ~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~--~~i~~~~~-------~~ei~~~----~~~~~~~~~ 175 (254)
...+++++..+++|+.+++.|||||||||||++++|....... +++.+... ..+..+. ..+|+..+.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3467888888999999999999999999999999998864311 11211110 0000000 000111000
Q ss_pred -----------------cc-----------------------------cccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 176 -----------------TA-----------------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 176 -----------------~~-----------------------------~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
.. .-..-.|||++.|+.++-.+...|+++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 00 00011299999999999999999999999999
Q ss_pred CchHHHHHHH-------HHH-hCCceEEEEEch--hhHHHHhCChh
Q 025371 210 GTEAEAHACR-------SIA-ERGVMLIGTAHG--EWLENIIKNPI 245 (254)
Q Consensus 210 ~~~ld~~~~~-------~~~-~~G~~vi~t~H~--~~~~~~~~~~~ 245 (254)
+.++|..... ++. ..+.|.+++.|. .+..+.+++-.
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~ 333 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI 333 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee
Confidence 9999987633 332 247788887775 55566665543
No 453
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.78 E-value=4.3e-08 Score=77.80 Aligned_cols=108 Identities=30% Similarity=0.406 Sum_probs=61.6
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCe-------------------EEEEcCCCcc--ccCCCCCccccccccccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKR-------------------VVIVDTSNEI--GGDGDIPHSAIGTARRMQ 181 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~-------------------i~~~~~~~ei--~~~~~~~~~~~~~~~~~~ 181 (254)
..++|+|+||+||||++.-|+..+... +.+ |+.++...+- +... .....++ ++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~-~~~~rvG---kY~ 80 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVG-FSRPRVG---KYG 80 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcC-CCCcccc---eEE
Confidence 468999999999999999999877643 221 2222211111 1000 0111111 111
Q ss_pred CCChh--HHHHHHHHHHHccCCCEEEEeCCCchHHH-----HHHHHHHhCCceEEEEEchhh
Q 025371 182 VPEPS--LQHKVMIEAVENHMPEVIIVDEIGTEAEA-----HACRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 182 ~~s~g--~~~~~~l~~al~~~P~viilDEp~~~ld~-----~~~~~~~~~G~~vi~t~H~~~ 236 (254)
+.-.+ .-.--++.+|+.. .|+||+||+...+-. .++.+...++..+|+|.|-.+
T Consensus 81 V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 11111 1223355666544 899999999874221 235666678999999999764
No 454
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.76 E-value=7.1e-08 Score=81.19 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEeCCCchHHHHHHHHHH------hCCceEEEEEchhhHHHHhCCh
Q 025371 182 VPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACRSIA------ERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 182 ~~s~g~~~~~~l~~al~----~~P~viilDEp~~~ld~~~~~~~~------~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
.+|+|++...+++..++ ....++|+||+.+++|......+. ....-+|+|||...+.+..++.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~ 208 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKL 208 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57999998887775553 467899999999999987633322 2247899999998877666443
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.71 E-value=9.1e-08 Score=81.48 Aligned_cols=118 Identities=18% Similarity=0.179 Sum_probs=66.2
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHH-hccCcCCCCeEEEEcCCCc----------cccCC--CCC--cccccc--ccc
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIA-RVLSDEFQKRVVIVDTSNE----------IGGDG--DIP--HSAIGT--ARR 179 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~-g~~~~~~~~~i~~~~~~~e----------i~~~~--~~~--~~~~~~--~~~ 179 (254)
.=++.|.+++|.|+||||||||...++ +.... ++++.++..... +.+.. ... ...+.. ...
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccc
Confidence 347789999999999999999998885 33332 677766643211 11100 000 000000 001
Q ss_pred cCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCchHH---HHH-------HHHHHhCCceEEEEEchhh
Q 025371 180 MQVPEPSLQHKVMIEAVEN--HMPEVIIVDEIGTEAE---AHA-------CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~--~~P~viilDEp~~~ld---~~~-------~~~~~~~G~~vi~t~H~~~ 236 (254)
....+.+..+......... .+|+++++|||+..++ ... +..+.+.|.++++++|...
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 1122333344433333333 3999999999995322 222 2333567889999999754
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.64 E-value=1.7e-07 Score=72.16 Aligned_cols=102 Identities=25% Similarity=0.418 Sum_probs=58.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
+..++|.||+|+||||+++.++..+... +..+++++........ ... ..... ..+..........++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~------~~~--~~~~~----~~~~~~~~~~~~~~~ 85 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGL------VVA--ELFGH----FLVRLLFELAEKAKP 85 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhh------HHH--HHhhh----hhHhHHHHhhccCCC
Confidence 6789999999999999999999988632 4445554432211100 000 00000 012333445556789
Q ss_pred CEEEEeCCCch--HHHHHHH----HHHh-----CCceEEEEEchhh
Q 025371 202 EVIIVDEIGTE--AEAHACR----SIAE-----RGVMLIGTAHGEW 236 (254)
Q Consensus 202 ~viilDEp~~~--ld~~~~~----~~~~-----~G~~vi~t~H~~~ 236 (254)
.+|++||.... .....+. .... .+..+|++++...
T Consensus 86 ~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 86 GVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred eEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 99999999753 1222222 2221 3567888887643
No 457
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.60 E-value=7e-08 Score=96.47 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=56.4
Q ss_pred ccCCCChhHHHHHHHHHHHccCC--CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~P--~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
....+|+|++||+.|+++|..+| +++|||||++++|+.. +.++.+.|.+||+++|+.+... ..+.++.
T Consensus 484 ~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~ 560 (924)
T TIGR00630 484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVID 560 (924)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEE
Confidence 44567999999999999999886 8999999999999876 5556677999999999988776 4555443
No 458
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.59 E-value=2e-07 Score=93.15 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=65.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccC-cCCCCeEEEEcC-CCccccCCCCCccccccc-cccCCCChhHHHHHHHHHH
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDT-SNEIGGDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~-~~~~~~i~~~~~-~~ei~~~~~~~~~~~~~~-~~~~~~s~g~~~~~~l~~a 196 (254)
..+.+++|+|||.+||||+||.++-..- ...|- +++. ..++.....+. ..++.. ....-.|.-+.....++.+
T Consensus 605 ~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~---~VPa~~a~i~~~d~I~-triga~d~i~~g~STF~~E~~~~~~i 680 (854)
T PRK05399 605 EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS---FVPAESARIGIVDRIF-TRIGASDDLASGRSTFMVEMTETANI 680 (854)
T ss_pred CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC---ceeccceEecccCeee-eccCcccccccCcccHHHHHHHHHHH
Confidence 4456899999999999999999764321 11111 1110 11111100000 000000 0011123334445556666
Q ss_pred Hcc--CCCEEEEeCC---CchHHHHH-----HHHHHhC-CceEEEEEchhhHHHHhC
Q 025371 197 ENH--MPEVIIVDEI---GTEAEAHA-----CRSIAER-GVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 197 l~~--~P~viilDEp---~~~ld~~~-----~~~~~~~-G~~vi~t~H~~~~~~~~~ 242 (254)
+.. ++.++|+||| |+..|..+ +..+.+. |..++++||..++.+...
T Consensus 681 l~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 681 LNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 654 8999999999 55566443 3445555 578999999988776554
No 459
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.58 E-value=8e-08 Score=86.91 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=89.4
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe--------EEEEcCCCcccc------------------CCCCCcc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR--------VVIVDTSNEIGG------------------DGDIPHS 172 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~--------i~~~~~~~ei~~------------------~~~~~~~ 172 (254)
-.+|+..+++|-||.||||-++.++|-.+|+.++- ++......|+.. ...+|..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 46789999999999999999999999999875431 110000001100 0000000
Q ss_pred c---c------------------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------H
Q 025371 173 A---I------------------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 218 (254)
Q Consensus 173 ~---~------------------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~ 218 (254)
. + ...+....+|+|+-||.++|.+..+..|+.++|||.+-+|... +
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 0 0 0013344569999999999999999999999999999999765 5
Q ss_pred HHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 219 RSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 219 ~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+.+.+...=+|++.|+.++.+.+.+.+
T Consensus 257 Rsl~~p~~YiIVVEHDLsVLDylSDFi 283 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSVLDYLSDFI 283 (592)
T ss_pred HHhhCCCCeEEEEEeechHHHhhhcce
Confidence 555566677999999999999887654
No 460
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.58 E-value=6.6e-08 Score=81.19 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=38.9
Q ss_pred ChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHHHHHH-------HhCCceEEEEEchhhHH
Q 025371 184 EPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACRSI-------AERGVMLIGTAHGEWLE 238 (254)
Q Consensus 184 s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~~~~~-------~~~G~~vi~t~H~~~~~ 238 (254)
|.|+++...+...+...+ .++++|||-..+.+.....+ .+.+..+|+|||+..+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 788888866666665544 89999999999988763322 22367999999997653
No 461
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.55 E-value=1.1e-07 Score=95.16 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=55.9
Q ss_pred cccCCCChhHHHHHHHHHHHccCC--CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 178 RRMQVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 178 ~~~~~~s~g~~~~~~l~~al~~~P--~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+....+|+|++||+.++++|..+| +++|||||++++|+.. +.++.+.|.|||+++|+.+.... .+.++
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~-aD~vi 561 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA-ADYIV 561 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-CCEEE
Confidence 344567999999999999999987 9999999999999876 45556779999999999887664 44443
No 462
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=8.1e-07 Score=81.87 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-Ccccc----C---CCCCccccccccccCCCChhHH
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGG----D---GDIPHSAIGTARRMQVPEPSLQ 188 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-~ei~~----~---~~~~~~~~~~~~~~~~~s~g~~ 188 (254)
..+..|+.++|+|++|+|||||++.|++...++. ..+..++++ .|... . ..+.+..+ .......|.+++
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~-gvI~~iGerg~ev~e~~~~~l~~~gl~~tvv--v~~tsd~s~~~r 227 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI-NVISLVGERGREVKDFIRKELGEEGMRKSVV--VVATSDESHLMQ 227 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe-EEEEeCCCCcccHHHHHHHHhhhcccceeEE--EEECCCCCHHHH
Confidence 5588999999999999999999999999988752 334444443 22210 0 00111001 122334578888
Q ss_pred HHHHHHHHHc-------cCCCEEEEeCCCchHHHHHHHHHH-----hCCceEEEEEchhhHHHHhC
Q 025371 189 HKVMIEAVEN-------HMPEVIIVDEIGTEAEAHACRSIA-----ERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 189 ~~~~l~~al~-------~~P~viilDEp~~~ld~~~~~~~~-----~~G~~vi~t~H~~~~~~~~~ 242 (254)
++...+++.. .++-+|++|+++...++..-..+. ..|.+..+.+|-..+.+...
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~L~ERag 293 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSG 293 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchhHHHHhc
Confidence 8887777765 689999999999988886422222 23666666666555444443
No 463
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=2.6e-07 Score=80.13 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=31.5
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
++.|++++|+||+|+|||||+++|+...... +..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 7889999999999999999999997765432 55665554
No 464
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.49 E-value=2.8e-07 Score=77.32 Aligned_cols=33 Identities=6% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCC-----chHHHHHHH
Q 025371 187 LQHKVMIEAVENHMPEVIIVDEIG-----TEAEAHACR 219 (254)
Q Consensus 187 ~~~~~~l~~al~~~P~viilDEp~-----~~ld~~~~~ 219 (254)
+++...+++++..+|+++++|||+ +++|+....
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~ 194 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVA 194 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHH
Confidence 677789999999999999999999 999987633
No 465
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.44 E-value=1.3e-07 Score=70.67 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.8
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHH
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIA 143 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~ 143 (254)
++.+++.+++|+.++|+||+|||||||++++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 55677778999999999999999999999986
No 466
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.43 E-value=5.8e-07 Score=77.38 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=28.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
+..|+.++|+||+|+|||||++.|++.+...
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 6789999999999999999999999988754
No 467
>PRK04296 thymidine kinase; Provisional
Probab=98.43 E-value=2.7e-06 Score=70.31 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=58.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-C-ccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-N-EIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-~-ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
|.+++++||+|+||||++..++...... +.++.++... . .........+..+. .......+...-.+ .+.. ...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~~~~i~~~lg~~-~~~~~~~~~~~~~~-~~~~-~~~ 77 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYGEGKVVSRIGLS-REAIPVSSDTDIFE-LIEE-EGE 77 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEeccccccccCCcEecCCCCc-ccceEeCChHHHHH-HHHh-hCC
Confidence 6789999999999999987777655433 6676655221 0 10000000010000 00000111111111 1111 234
Q ss_pred CCCEEEEeCCCch-HH-HHH-HHHHHhCCceEEEEEchhh
Q 025371 200 MPEVIIVDEIGTE-AE-AHA-CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 200 ~P~viilDEp~~~-ld-~~~-~~~~~~~G~~vi~t~H~~~ 236 (254)
++++|++||...- .+ ... +..+.+.|.+++++.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 7899999999542 12 333 3444778999999998844
No 468
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.41 E-value=6.5e-07 Score=76.51 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=56.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCc-C-----CCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHH
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSD-E-----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~-~-----~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~a 196 (254)
..++|+|||.+||||+||.++-..-- . ..+. ..+.-...+... +... .....-.|.-...-..++.+
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~-~~i~~~d~I~t~--~~~~----d~~~~~~S~F~~E~~~~~~i 116 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES-AEIPIFDRIFTR--IGDD----DSIESGLSTFMAEMKRLSSI 116 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE-EEEE--SEEEEE--ES-------SSTTSSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc-cccccccEEEee--cccc----cccccccccHHHhHHHHHhh
Confidence 47999999999999999998743310 0 0111 111111111000 0000 00011122222222233333
Q ss_pred Hc--cCCCEEEEeCCCchHHH---HH-----HHHHHh-CCceEEEEEchhhHHHHh
Q 025371 197 EN--HMPEVIIVDEIGTEAEA---HA-----CRSIAE-RGVMLIGTAHGEWLENII 241 (254)
Q Consensus 197 l~--~~P~viilDEp~~~ld~---~~-----~~~~~~-~G~~vi~t~H~~~~~~~~ 241 (254)
+. .+-.++|+||++.+-+. .+ +..+.+ .+..++++||..++.+..
T Consensus 117 l~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~~ 172 (235)
T PF00488_consen 117 LRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAELL 172 (235)
T ss_dssp HHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGHH
T ss_pred hhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHHh
Confidence 32 46689999999764222 21 555666 588899999998876654
No 469
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.41 E-value=6.8e-08 Score=78.35 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHccCCCEEEEeCCCchHH-----HHHHHHHHhCCceEEEEEchh
Q 025371 193 IEAVENHMPEVIIVDEIGTEAE-----AHACRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~ld-----~~~~~~~~~~G~~vi~t~H~~ 235 (254)
+..++ .+++++++||+...+- ..++..+.+.+..+|.|.|..
T Consensus 89 L~~~~-~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 89 LRNAL-SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp CHHHH-HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHhhc-CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 44445 7999999999987432 334677778788999999987
No 470
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=3.2e-07 Score=85.31 Aligned_cols=114 Identities=12% Similarity=0.209 Sum_probs=63.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcC-CCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~-~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
.+.|.||+|+|||+|+++++..+... .+.++.++.... +. .. +. .... .+. ...+...++.+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~-f~-----~~--~~--~~~~--~~~---~~~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FL-----ND--LV--DSMK--EGK---LNEFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HH-----HH--HH--HHHh--ccc---HHHHHHHHHhcCC
Confidence 58999999999999999999876432 244666654321 10 00 00 0000 000 0112233345799
Q ss_pred EEEEeCCCchHHH----H----HHHHHHhCCceEEEEE-chhhHHHHhCChhhhhhhcc
Q 025371 203 VIIVDEIGTEAEA----H----ACRSIAERGVMLIGTA-HGEWLENIIKNPILSDLVCS 252 (254)
Q Consensus 203 viilDEp~~~ld~----~----~~~~~~~~G~~vi~t~-H~~~~~~~~~~~~~~~l~~g 252 (254)
+|++||+....+. . .+..+.+.|+.+|+++ |...-...+.++....+..|
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g 255 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG 255 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC
Confidence 9999999753221 1 1334556677666655 66555555555555444443
No 471
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.34 E-value=1.7e-06 Score=66.12 Aligned_cols=68 Identities=29% Similarity=0.473 Sum_probs=45.2
Q ss_pred EEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC-CCE
Q 025371 125 ILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM-PEV 203 (254)
Q Consensus 125 ~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~-P~v 203 (254)
++|.||+|+||||+++.++..+. ..++.++....... ...+.....+..+..+-... |.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cccccccccccccc---------------ccccccccccccccccccccccee
Confidence 58999999999999999999874 34444444322210 11122334455666666666 999
Q ss_pred EEEeCCCc
Q 025371 204 IIVDEIGT 211 (254)
Q Consensus 204 iilDEp~~ 211 (254)
|++||...
T Consensus 62 l~iDe~d~ 69 (132)
T PF00004_consen 62 LFIDEIDK 69 (132)
T ss_dssp EEEETGGG
T ss_pred eeeccchh
Confidence 99999955
No 472
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.34 E-value=2.5e-06 Score=78.25 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=47.2
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.++..++|.|||||||||+++++++..... .+.+.. .++. . .....+....+..+..|..
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~----fi~i~~-s~l~------~--------k~~ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT----FIRVVG-SEFV------Q--------KYLGEGPRMVRDVFRLARE 236 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCC----EEEEeh-HHHH------H--------HhcchhHHHHHHHHHHHHh
Confidence 4556789999999999999999999976532 122211 1110 0 0011122334556777778
Q ss_pred cCCCEEEEeCCC
Q 025371 199 HMPEVIIVDEIG 210 (254)
Q Consensus 199 ~~P~viilDEp~ 210 (254)
..|.+|++||+.
T Consensus 237 ~~P~ILfIDEID 248 (398)
T PTZ00454 237 NAPSIIFIDEVD 248 (398)
T ss_pred cCCeEEEEECHh
Confidence 899999999964
No 473
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.32 E-value=5.2e-07 Score=83.44 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=35.5
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~ 156 (254)
.++.++..+.+|++++|+||+||||||||+ +++..++.++.|.+
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~l 64 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFL 64 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEE
Confidence 466777789999999999999999999999 67777765544443
No 474
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.32 E-value=5.1e-07 Score=73.93 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=53.9
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
++.++++++.||+|+|||.|+.+|+..+-. .+..+.++....-+.. + +.. . ..+. ....+.+ .
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~---l--------~~~-~-~~~~-~~~~~~~--l 106 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDE---L--------KQS-R-SDGS-YEELLKR--L 106 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHH---H--------HCC-H-CCTT-HCHHHHH--H
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceecc---c--------ccc-c-cccc-hhhhcCc--c
Confidence 677899999999999999999999976654 3666666654322210 0 000 0 0111 1112222 2
Q ss_pred cCCCEEEEeCCCchH-HHHH------HHHH-HhCCceEEEEEch-hhHHHHhCChhh
Q 025371 199 HMPEVIIVDEIGTEA-EAHA------CRSI-AERGVMLIGTAHG-EWLENIIKNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~l-d~~~------~~~~-~~~G~~vi~t~H~-~~~~~~~~~~~~ 246 (254)
.++|+||+||....- +.+. +... .+...|+|+|-.. .++.+.+.++.+
T Consensus 107 ~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~~~d~~~ 163 (178)
T PF01695_consen 107 KRVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLSPSELEEVLGDRAL 163 (178)
T ss_dssp HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-HHHHHT-------
T ss_pred ccccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCchhhHhhccccccc
Confidence 489999999997642 1111 2222 2334455555444 555566665443
No 475
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=1e-06 Score=90.08 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=59.0
Q ss_pred cccCCCChhHHHHHHHHHHHcc----------CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHH
Q 025371 178 RRMQVPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 178 ~~~~~~s~g~~~~~~l~~al~~----------~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~ 240 (254)
+.+..+|+|+++++.++++|.. +|++||+|||++++|+.. +..+...|.+|++++|...+...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 4567789999999999999985 799999999999999876 44455668899999999999998
Q ss_pred hCChhhh
Q 025371 241 IKNPILS 247 (254)
Q Consensus 241 ~~~~~~~ 247 (254)
+++.+..
T Consensus 1026 ~~~~i~v 1032 (1042)
T TIGR00618 1026 IPHRILV 1032 (1042)
T ss_pred hCCEEEE
Confidence 8877643
No 476
>PRK06526 transposase; Provisional
Probab=98.29 E-value=9e-07 Score=76.46 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=28.9
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~ 156 (254)
++.+++++++||+|+|||+|+.+|+...... +.++.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~v~f 131 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHRVLF 131 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCchhh
Confidence 6678899999999999999999998765432 444433
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.27 E-value=9e-07 Score=59.42 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=24.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
|..++|+|+|||||||++.+|.=.+-+.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5689999999999999999998776653
No 478
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=6.5e-06 Score=76.53 Aligned_cols=70 Identities=29% Similarity=0.443 Sum_probs=50.9
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
+.++++||||.|||-|.|+++|.-.-. ++.-...|+. .+.+.-|..+-|.++++|-...|.
T Consensus 338 KGVLLvGPPGTGKTlLARAvAGEA~VP-----FF~~sGSEFd--------------Em~VGvGArRVRdLF~aAk~~APc 398 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAGEAGVP-----FFYASGSEFD--------------EMFVGVGARRVRDLFAAAKARAPC 398 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhcccCCC-----eEeccccchh--------------hhhhcccHHHHHHHHHHHHhcCCe
Confidence 369999999999999999999975432 2222222321 122233556778899999999999
Q ss_pred EEEEeCCCc
Q 025371 203 VIIVDEIGT 211 (254)
Q Consensus 203 viilDEp~~ 211 (254)
+|++||+.+
T Consensus 399 IIFIDEiDa 407 (752)
T KOG0734|consen 399 IIFIDEIDA 407 (752)
T ss_pred EEEEechhh
Confidence 999999965
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.26 E-value=2.5e-06 Score=76.03 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=53.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc-cccCCCCC----ccccccccccCCCChhHHHHHHHH
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGGDGDIP----HSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e-i~~~~~~~----~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
..+++++++|||||||||++..|++.+.+. ++++.+++.... .....+.. ...+..................+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999999999998765 677777654321 00000000 000000000000111122234456
Q ss_pred HHHccCCCEEEEeCCCc
Q 025371 195 AVENHMPEVIIVDEIGT 211 (254)
Q Consensus 195 ~al~~~P~viilDEp~~ 211 (254)
.+...+.|++|+|=|..
T Consensus 191 ~~~~~~~D~ViIDTaGr 207 (318)
T PRK10416 191 AAKARGIDVLIIDTAGR 207 (318)
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 66778899999998865
No 480
>PRK08181 transposase; Validated
Probab=98.24 E-value=2.1e-06 Score=74.78 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=32.0
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.++.+++++|.||+|+|||.|+.+|+...... +..+.++.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTR 141 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeee
Confidence 46788999999999999999999999766533 55665554
No 481
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.24 E-value=1.2e-06 Score=79.56 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=63.2
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC------CCCCccccccccccCCCChhHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------GDIPHSAIGTARRMQVPEPSLQHKVM 192 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~------~~~~~~~~~~~~~~~~~s~g~~~~~~ 192 (254)
+.+|+.++|.|+||+|||||+..++...... +.+++++......... ......++ .+.+. ......
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l------~l~~e-~~le~I 150 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQIKLRADRLGISTENL------YLLAE-TNLEDI 150 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHHHHHHHHcCCCcccE------EEEcc-CcHHHH
Confidence 6778999999999999999999999877654 5677766432111000 00000111 01111 111223
Q ss_pred HHHHHccCCCEEEEeCCCch----HH--------H----HHHHH-HHhCCceEEEEEchh
Q 025371 193 IEAVENHMPEVIIVDEIGTE----AE--------A----HACRS-IAERGVMLIGTAHGE 235 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~----ld--------~----~~~~~-~~~~G~~vi~t~H~~ 235 (254)
+..+...+|+++++|+...- .+ . ..+.+ +.+.|.+++++.|..
T Consensus 151 ~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvt 210 (372)
T cd01121 151 LASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVT 210 (372)
T ss_pred HHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 33344579999999998431 11 0 11333 346689999999963
No 482
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.21 E-value=2.3e-06 Score=76.58 Aligned_cols=117 Identities=23% Similarity=0.247 Sum_probs=66.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
.++.+++.||+|+|||+|+.+|+..+... +..+.++....-+.. +.. .... ........ .....+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~~l~~~---l~~------~~~~---~~~~~~~~--~~~l~~ 246 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTADELIEI---LRE------IRFN---NDKELEEV--YDLLIN 246 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHHHHHHH---HHH------HHhc---cchhHHHH--HHHhcc
Confidence 56789999999999999999999877543 666766654322110 000 0000 00011111 233458
Q ss_pred CCEEEEeCCCchH-H---HHHHHHH----HhCCceEEEEEc-h-hhHHHHhCChhhhhhhcc
Q 025371 201 PEVIIVDEIGTEA-E---AHACRSI----AERGVMLIGTAH-G-EWLENIIKNPILSDLVCS 252 (254)
Q Consensus 201 P~viilDEp~~~l-d---~~~~~~~----~~~G~~vi~t~H-~-~~~~~~~~~~~~~~l~~g 252 (254)
+|+||+|+..... + ...+..+ .+.+..+|+||. . .++.+.+..++...|.++
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~ 308 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGN 308 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcC
Confidence 8999999996531 1 1222222 244665555554 3 445566777777777655
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.21 E-value=8.7e-06 Score=80.48 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=48.5
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+..++.++|.||+|||||||+++|++.... .++.++.. ++. .. .........+..+..+..
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~~----~~i~i~~~-~i~------~~--------~~g~~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAGA----YFISINGP-EIM------SK--------YYGESEERLREIFKEAEE 269 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCC----eEEEEecH-HHh------cc--------cccHHHHHHHHHHHHHHh
Confidence 456788999999999999999999997643 33433322 111 00 011223445566777778
Q ss_pred cCCCEEEEeCC
Q 025371 199 HMPEVIIVDEI 209 (254)
Q Consensus 199 ~~P~viilDEp 209 (254)
..|.+|++||.
T Consensus 270 ~~p~il~iDEi 280 (733)
T TIGR01243 270 NAPSIIFIDEI 280 (733)
T ss_pred cCCcEEEeehh
Confidence 89999999996
No 484
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.19 E-value=3.1e-06 Score=86.57 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=57.6
Q ss_pred cccCCCChhHHHHHHHHHHHcc--------CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 178 RRMQVPEPSLQHKVMIEAVENH--------MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 178 ~~~~~~s~g~~~~~~l~~al~~--------~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
+.+..+|+|++++++++++|.. +|++||+|||++++|... +..+...|.+|++++|...+.+.+.
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4567789999999999999986 899999999999999876 4455567999999999888877775
Q ss_pred Chh
Q 025371 243 NPI 245 (254)
Q Consensus 243 ~~~ 245 (254)
..+
T Consensus 1025 ~qi 1027 (1047)
T PRK10246 1025 VQI 1027 (1047)
T ss_pred ceE
Confidence 544
No 485
>PRK06893 DNA replication initiation factor; Validated
Probab=98.19 E-value=5.9e-06 Score=70.28 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=22.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
..+.|.||+|+|||+|+++++.....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35799999999999999999987643
No 486
>PF13173 AAA_14: AAA domain
Probab=98.19 E-value=9.7e-06 Score=62.51 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=55.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
++.++|.||-||||||+++.++....+ ..++++++-...-. ......+ ....+......++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~--~~~~~yi~~~~~~~-------------~~~~~~~----~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP--PENILYINFDDPRD-------------RRLADPD----LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc--cccceeeccCCHHH-------------HHHhhhh----hHHHHHHhhccCC
Confidence 578999999999999999999865552 34455543221110 0000000 0111111122368
Q ss_pred CEEEEeCCCchHHHHH-HHHHHhCC--ceEEEEEchhh
Q 025371 202 EVIIVDEIGTEAEAHA-CRSIAERG--VMLIGTAHGEW 236 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-~~~~~~~G--~~vi~t~H~~~ 236 (254)
.+|++||...--+... +..+.+.+ ..+++|.....
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchH
Confidence 9999999987545443 55555555 57777776544
No 487
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=1.3e-06 Score=79.14 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=34.4
Q ss_pred hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-CeEEEEc
Q 025371 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVD 158 (254)
Q Consensus 113 ~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-~~i~~~~ 158 (254)
+..+..+..|++++++||||+||||++..|+.......+ .++.++.
T Consensus 128 ~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 128 DSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred cCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 344455788999999999999999999999986543223 4565554
No 488
>PRK12377 putative replication protein; Provisional
Probab=98.17 E-value=3.8e-06 Score=72.24 Aligned_cols=113 Identities=15% Similarity=0.311 Sum_probs=63.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
...++|.||+|+|||+|+.+|+..+... +..+.++....-+.. + +. .. ..+......+.. ..++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~~l~~~---l--------~~-~~-~~~~~~~~~l~~--l~~~ 164 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVPDVMSR---L--------HE-SY-DNGQSGEKFLQE--LCKV 164 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHHHHHHH---H--------HH-HH-hccchHHHHHHH--hcCC
Confidence 4679999999999999999999887643 555555433221110 0 00 00 011111111222 3689
Q ss_pred CEEEEeCCCch----HHHHHHHHHH----hCCceEEEEEc-h-hhHHHHhCChhhhhhh
Q 025371 202 EVIIVDEIGTE----AEAHACRSIA----ERGVMLIGTAH-G-EWLENIIKNPILSDLV 250 (254)
Q Consensus 202 ~viilDEp~~~----ld~~~~~~~~----~~G~~vi~t~H-~-~~~~~~~~~~~~~~l~ 250 (254)
|+|++||.... -....+.++. +...++|+||. . ..+.+.+.++++..|.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHHh
Confidence 99999999553 1112233332 33555555553 3 5566777777777765
No 489
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.17 E-value=3.9e-06 Score=78.18 Aligned_cols=115 Identities=19% Similarity=0.338 Sum_probs=63.1
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCcccccc-ccccCCCChhHHHHHHHHHH
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~-~~~~~~~s~g~~~~~~l~~a 196 (254)
=+.+|+.++|.|++|+|||||+..++...... +++++++........... ....++. ...+.+.+. ......+...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~-ra~rlg~~~~~l~~~~e-~~l~~i~~~i 152 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKL-RAERLGLPSDNLYLLAE-TNLEAILATI 152 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHH-HHHHcCCChhcEEEeCC-CCHHHHHHHH
Confidence 36778999999999999999999998876532 667777643211100000 0000000 000111110 0112223333
Q ss_pred HccCCCEEEEeCCCchHH------------HH----HHHHH-HhCCceEEEEEchh
Q 025371 197 ENHMPEVIIVDEIGTEAE------------AH----ACRSI-AERGVMLIGTAHGE 235 (254)
Q Consensus 197 l~~~P~viilDEp~~~ld------------~~----~~~~~-~~~G~~vi~t~H~~ 235 (254)
-..+|+++++|++..-.. .. .+.++ .+.|.+++++.|-.
T Consensus 153 ~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvt 208 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVT 208 (446)
T ss_pred HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 346899999999864211 11 13333 45699999999953
No 490
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.16 E-value=6.9e-06 Score=76.15 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=46.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.++..++|.||||+||||+++++++..... .+.+... ++. .. ....+....+..+..|..
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~----fi~V~~s-eL~------~k--------~~Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSAT----FLRVVGS-ELI------QK--------YLGDGPKLVRELFRVAEE 274 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCC----EEEEecc-hhh------hh--------hcchHHHHHHHHHHHHHh
Confidence 3456789999999999999999999976542 1222111 110 00 001112234556667777
Q ss_pred cCCCEEEEeCC
Q 025371 199 HMPEVIIVDEI 209 (254)
Q Consensus 199 ~~P~viilDEp 209 (254)
..|.+|++||+
T Consensus 275 ~~P~ILfIDEI 285 (438)
T PTZ00361 275 NAPSIVFIDEI 285 (438)
T ss_pred CCCcEEeHHHH
Confidence 89999999996
No 491
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.16 E-value=2.2e-05 Score=67.12 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHHh
Q 025371 122 GKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
|...+|+||+|+|||||+-.++-
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999988874
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.14 E-value=1.5e-06 Score=72.65 Aligned_cols=29 Identities=41% Similarity=0.431 Sum_probs=26.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
++|.+++|+||||||||||+++|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999998864
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.14 E-value=2e-06 Score=70.71 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=24.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
|++++|+||||||||||++.|++...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 678999999999999999999998754
No 494
>PRK03918 chromosome segregation protein; Provisional
Probab=98.13 E-value=3.3e-06 Score=84.90 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=50.5
Q ss_pred ccCCCChhHHHH------HHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 179 RMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 179 ~~~~~s~g~~~~------~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
.+..+|+|++++ +++++++..+|+++|+|||++++|... +..+...+.++|++||+..+...+++.
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~ 863 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYV 863 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeE
Confidence 456689999995 455567788999999999999999875 233344577999999998877665443
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.11 E-value=2.5e-06 Score=69.71 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=26.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+|+.++|+|+|||||||++++|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5889999999999999999999998865
No 496
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.11 E-value=5.7e-06 Score=79.34 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 181 QVPEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~----P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
..+|+|+++|+++++++... |+++|+|||++++|... +.++. .|++||++||....... ++.+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~~-ad~~ 512 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAAH-ADAH 512 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHHh-cCeE
Confidence 35799999999999999875 69999999999999876 33333 48999999999887764 4443
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.09 E-value=4e-06 Score=78.24 Aligned_cols=110 Identities=22% Similarity=0.347 Sum_probs=63.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC------CCCCccccccccccCCCChhHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------GDIPHSAIGTARRMQVPEPSLQHKVM 192 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~------~~~~~~~~~~~~~~~~~s~g~~~~~~ 192 (254)
+.+|+.++|.|+||+|||||+..++...... +.+++++......... ......++ .+.... .....
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l------~~~~e~-~~~~I 162 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQIKMRAIRLGLPEPNL------YVLSET-NWEQI 162 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHHHHHHHHcCCChHHe------EEcCCC-CHHHH
Confidence 7789999999999999999999998766544 5566665422111000 00000011 111110 11222
Q ss_pred HHHHHccCCCEEEEeCCCchH------------HHH----HHHH-HHhCCceEEEEEchhh
Q 025371 193 IEAVENHMPEVIIVDEIGTEA------------EAH----ACRS-IAERGVMLIGTAHGEW 236 (254)
Q Consensus 193 l~~al~~~P~viilDEp~~~l------------d~~----~~~~-~~~~G~~vi~t~H~~~ 236 (254)
+..+-..+|+++++|.+..-. +.. .+.+ +.+.|.++++|+|...
T Consensus 163 ~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk 223 (454)
T TIGR00416 163 CANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK 223 (454)
T ss_pred HHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 333344689999999885411 111 1333 3467999999999643
No 498
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.09 E-value=1e-05 Score=80.76 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=59.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC-cCCCCeEEEEcC-CCccccCCCCCcccccccc-ccCCCChhHHHHHHHHHHHc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDT-SNEIGGDGDIPHSAIGTAR-RMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~-~~~~~~i~~~~~-~~ei~~~~~~~~~~~~~~~-~~~~~s~g~~~~~~l~~al~ 198 (254)
...++|+|||.+||||+||.++=..- ...|- +++. ..+++....+. ..++... ...-.|.=+..-..++.++.
T Consensus 592 ~~~~iITGPNmgGKSt~lrqvali~imAq~G~---~VPA~~a~i~~~D~If-trig~~d~i~~g~STF~~Em~e~a~IL~ 667 (840)
T TIGR01070 592 RRMLLITGPNMGGKSTYMRQTALIALLAQIGS---FVPAESAELPLFDRIF-TRIGASDDLASGRSTFMVEMTEAANILH 667 (840)
T ss_pred ccEEEEECCCCCCchHHHHHHHHHHHHHhcCC---CccchheEeccccEEE-EecCcccchhcCcchHHHHHHHHHHHHh
Confidence 35799999999999999998763221 01011 0100 01111100000 0000000 00111222223334444444
Q ss_pred --cCCCEEEEeCCCch---HHHHH-----HHHHHh-CCceEEEEEchhhHHHHh
Q 025371 199 --HMPEVIIVDEIGTE---AEAHA-----CRSIAE-RGVMLIGTAHGEWLENII 241 (254)
Q Consensus 199 --~~P~viilDEp~~~---ld~~~-----~~~~~~-~G~~vi~t~H~~~~~~~~ 241 (254)
.++.++|+||++.+ .|..+ +..+.+ .|..++++||..++....
T Consensus 668 ~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~ 721 (840)
T TIGR01070 668 NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALE 721 (840)
T ss_pred hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHh
Confidence 57899999999554 44333 344455 678899999987766554
No 499
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.08 E-value=5.6e-05 Score=61.14 Aligned_cols=88 Identities=27% Similarity=0.270 Sum_probs=48.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc-C----CCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-D----GDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~-~----~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+++++|++||||||+...++..+... +.++.+++....-.. . .......+.........+...-....+..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999877654 667766653311000 0 00000000000000001111222234445566
Q ss_pred cCCCEEEEeCCCch
Q 025371 199 HMPEVIIVDEIGTE 212 (254)
Q Consensus 199 ~~P~viilDEp~~~ 212 (254)
.+.+++|+|.|...
T Consensus 81 ~~~d~viiDt~g~~ 94 (173)
T cd03115 81 ENFDVVIVDTAGRL 94 (173)
T ss_pred CCCCEEEEECcccc
Confidence 78999999999863
No 500
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.08 E-value=3.1e-05 Score=66.94 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=29.5
Q ss_pred hhhhhccccCCc-EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 112 IDMVYDLLHYGK-SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 112 ~~~l~~~i~~g~-~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
...+...++++. .++|+||+||||||+++.++..+.+
T Consensus 32 ~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 32 MAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 444545566654 7999999999999999999998775
Done!