Query 025371
Match_columns 254
No_of_seqs 305 out of 2886
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jvv_A Twitching mobility prot 100.0 4.5E-29 1.5E-33 223.8 18.2 212 25-245 12-241 (356)
2 2pt7_A CAG-ALFA; ATPase, prote 99.9 9.9E-27 3.4E-31 206.8 19.3 218 15-246 32-286 (330)
3 3gfo_A Cobalt import ATP-bindi 99.9 6E-27 2E-31 203.1 9.2 148 97-246 10-215 (275)
4 2oap_1 GSPE-2, type II secreti 99.9 1.3E-25 4.4E-30 210.0 17.2 218 18-246 134-378 (511)
5 3rlf_A Maltose/maltodextrin im 99.9 4.7E-26 1.6E-30 205.1 12.8 142 97-246 6-205 (381)
6 2pcj_A ABC transporter, lipopr 99.9 4E-26 1.4E-30 192.4 10.4 146 97-246 7-210 (224)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 9.1E-26 3.1E-30 201.8 13.1 148 97-247 7-211 (359)
8 4g1u_C Hemin import ATP-bindin 99.9 6.7E-26 2.3E-30 195.7 11.8 148 97-247 14-220 (266)
9 2olj_A Amino acid ABC transpor 99.9 9E-26 3.1E-30 194.5 12.6 148 97-247 27-231 (263)
10 1vpl_A ABC transporter, ATP-bi 99.9 9.4E-26 3.2E-30 193.7 11.9 148 97-246 18-217 (256)
11 3tui_C Methionine import ATP-b 99.9 7.4E-26 2.5E-30 202.6 11.4 150 97-247 27-236 (366)
12 1b0u_A Histidine permease; ABC 99.9 1.1E-25 3.9E-30 193.8 11.9 147 97-246 9-224 (262)
13 3tif_A Uncharacterized ABC tra 99.9 5.1E-26 1.7E-30 193.1 9.5 149 97-246 4-216 (235)
14 1ji0_A ABC transporter; ATP bi 99.9 2.2E-25 7.6E-30 189.7 13.1 148 97-246 9-210 (240)
15 2nq2_C Hypothetical ABC transp 99.9 2.7E-25 9.3E-30 190.5 12.9 149 97-247 7-201 (253)
16 2yyz_A Sugar ABC transporter, 99.9 3E-25 1E-29 198.8 13.5 142 97-246 6-205 (359)
17 2it1_A 362AA long hypothetical 99.9 2.4E-25 8.4E-30 199.6 12.0 147 97-246 6-205 (362)
18 1z47_A CYSA, putative ABC-tran 99.9 1.7E-25 6E-30 199.9 10.4 147 97-246 17-217 (355)
19 1g6h_A High-affinity branched- 99.9 2.2E-25 7.4E-30 191.6 10.4 148 97-246 10-224 (257)
20 1v43_A Sugar-binding transport 99.9 3.9E-25 1.3E-29 199.0 12.4 147 97-246 14-213 (372)
21 2ewv_A Twitching motility prot 99.9 7E-25 2.4E-29 197.8 13.7 211 25-244 24-253 (372)
22 1g29_1 MALK, maltose transport 99.9 5.7E-25 1.9E-29 198.0 12.5 147 97-246 6-211 (372)
23 2onk_A Molybdate/tungstate ABC 99.9 9.8E-25 3.3E-29 185.7 12.6 144 97-246 4-198 (240)
24 3d31_A Sulfate/molybdate ABC t 99.9 5.6E-25 1.9E-29 196.4 10.5 146 97-246 4-199 (348)
25 1sgw_A Putative ABC transporte 99.9 1.3E-25 4.6E-30 187.8 5.6 148 97-247 13-205 (214)
26 1oxx_K GLCV, glucose, ABC tran 99.9 3.8E-25 1.3E-29 198.0 8.1 149 97-246 6-212 (353)
27 2ihy_A ABC transporter, ATP-bi 99.9 4.5E-25 1.5E-29 191.7 8.1 147 97-246 24-234 (279)
28 2cbz_A Multidrug resistance-as 99.9 1.3E-24 4.4E-29 184.6 8.1 149 97-246 6-199 (237)
29 2yz2_A Putative ABC transporte 99.9 4.5E-24 1.5E-28 184.3 11.6 150 97-246 5-209 (266)
30 2ff7_A Alpha-hemolysin translo 99.9 2.9E-24 9.8E-29 183.5 10.2 146 97-246 10-214 (247)
31 2d2e_A SUFC protein; ABC-ATPas 99.9 2.9E-24 9.8E-29 183.9 9.9 147 97-246 6-215 (250)
32 2pze_A Cystic fibrosis transme 99.9 5.1E-24 1.7E-28 180.0 10.9 149 97-246 9-200 (229)
33 2qi9_C Vitamin B12 import ATP- 99.9 3.8E-24 1.3E-28 183.0 9.6 136 111-247 15-205 (249)
34 1mv5_A LMRA, multidrug resista 99.9 6.2E-24 2.1E-28 181.0 10.9 146 97-246 4-208 (243)
35 2ixe_A Antigen peptide transpo 99.9 7.9E-24 2.7E-28 183.2 11.6 149 97-246 19-227 (271)
36 2zu0_C Probable ATP-dependent 99.9 1.1E-23 3.7E-28 181.9 9.0 148 97-246 23-236 (267)
37 3nh6_A ATP-binding cassette SU 99.9 1.1E-23 3.9E-28 184.9 8.3 147 97-246 56-259 (306)
38 2ghi_A Transport protein; mult 99.9 2.7E-23 9.3E-28 178.8 9.1 146 97-246 20-224 (260)
39 2pjz_A Hypothetical protein ST 99.9 8.7E-23 3E-27 175.8 11.1 147 97-246 4-197 (263)
40 2gza_A Type IV secretion syste 99.9 7.8E-22 2.7E-26 177.2 17.3 222 18-247 28-299 (361)
41 3gd7_A Fusion complex of cysti 99.9 3.2E-23 1.1E-27 187.5 7.2 146 97-245 22-223 (390)
42 1yqt_A RNAse L inhibitor; ATP- 99.9 5.4E-22 1.8E-26 186.8 13.3 146 99-246 26-229 (538)
43 3ozx_A RNAse L inhibitor; ATP 99.9 4.3E-22 1.5E-26 187.3 12.0 146 99-247 274-458 (538)
44 3b5x_A Lipid A export ATP-bind 99.9 1E-21 3.5E-26 186.6 13.2 148 97-246 344-549 (582)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 8.9E-22 3.1E-26 185.3 12.4 146 99-247 292-474 (538)
46 2bbs_A Cystic fibrosis transme 99.9 4.5E-22 1.5E-26 173.6 9.4 135 111-246 53-229 (290)
47 3bk7_A ABC transporter ATP-bin 99.9 1.4E-21 4.6E-26 186.2 13.2 147 98-246 95-299 (607)
48 3bk7_A ABC transporter ATP-bin 99.9 9.5E-22 3.2E-26 187.2 12.0 146 99-247 362-544 (607)
49 4a82_A Cystic fibrosis transme 99.9 5.4E-22 1.8E-26 188.4 8.0 148 97-245 342-545 (578)
50 3j16_B RLI1P; ribosome recycli 99.8 2.3E-21 7.8E-26 184.5 10.6 136 112-247 363-540 (608)
51 3b60_A Lipid A export ATP-bind 99.8 1.1E-21 3.8E-26 186.4 8.2 147 97-245 344-548 (582)
52 2yl4_A ATP-binding cassette SU 99.8 1.9E-21 6.6E-26 185.2 9.6 148 97-246 344-552 (595)
53 3qf4_B Uncharacterized ABC tra 99.8 1.5E-21 5.2E-26 186.0 8.8 146 97-245 357-559 (598)
54 3qf4_A ABC transporter, ATP-bi 99.8 1.9E-21 6.5E-26 184.9 9.2 148 97-246 344-548 (587)
55 3j16_B RLI1P; ribosome recycli 99.8 6E-21 2E-25 181.6 10.8 145 99-246 82-292 (608)
56 3ozx_A RNAse L inhibitor; ATP 99.8 8.1E-21 2.8E-25 178.6 10.3 127 119-246 22-208 (538)
57 2eyu_A Twitching motility prot 99.8 6.5E-20 2.2E-24 157.7 11.0 127 111-244 16-142 (261)
58 2iw3_A Elongation factor 3A; a 99.8 1.9E-20 6.5E-25 185.0 6.7 68 180-247 899-970 (986)
59 4gp7_A Metallophosphoesterase; 99.8 1.6E-21 5.4E-26 157.3 -1.5 127 115-242 2-166 (171)
60 3ux8_A Excinuclease ABC, A sub 99.8 9.9E-20 3.4E-24 175.6 10.5 66 180-246 200-274 (670)
61 2iw3_A Elongation factor 3A; a 99.8 2.6E-19 8.7E-24 177.0 13.3 147 99-247 440-617 (986)
62 1p9r_A General secretion pathw 99.8 1.3E-18 4.3E-23 158.9 16.3 203 26-242 47-278 (418)
63 3g5u_A MCG1178, multidrug resi 99.8 1.2E-19 4.3E-24 185.5 8.9 145 97-241 390-591 (1284)
64 4f4c_A Multidrug resistance pr 99.8 1.6E-19 5.4E-24 185.2 6.6 147 97-243 1079-1284(1321)
65 3g5u_A MCG1178, multidrug resi 99.8 4.5E-19 1.5E-23 181.4 8.2 148 97-245 1033-1239(1284)
66 4f4c_A Multidrug resistance pr 99.8 3.1E-19 1.1E-23 183.0 5.9 145 97-242 418-620 (1321)
67 3ux8_A Excinuclease ABC, A sub 99.7 3E-18 1E-22 165.2 9.5 66 180-246 541-616 (670)
68 1ye8_A Protein THEP1, hypothet 99.7 3.1E-17 1.1E-21 133.2 7.5 120 124-243 2-151 (178)
69 3b85_A Phosphate starvation-in 99.7 1.1E-18 3.6E-23 145.3 -1.2 117 119-240 19-163 (208)
70 4aby_A DNA repair protein RECN 99.7 8.7E-17 3E-21 146.2 7.0 61 183-245 296-365 (415)
71 3pih_A Uvrabc system protein A 99.6 6.2E-16 2.1E-20 152.5 12.4 66 180-246 803-878 (916)
72 2npi_A Protein CLP1; CLP1-PCF1 99.6 1E-16 3.5E-21 148.0 6.2 123 114-236 130-299 (460)
73 2vf7_A UVRA2, excinuclease ABC 99.6 1.3E-16 4.4E-21 156.2 7.1 67 180-247 728-804 (842)
74 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 3E-16 1E-20 141.0 8.8 62 181-242 278-352 (365)
75 2r6f_A Excinuclease ABC subuni 99.6 1.6E-15 5.4E-20 149.3 9.9 66 181-247 844-919 (972)
76 2ygr_A Uvrabc system protein A 99.6 2.1E-15 7.2E-20 148.8 10.2 65 181-246 862-936 (993)
77 2ehv_A Hypothetical protein PH 99.5 1E-14 3.6E-19 122.8 6.3 120 117-238 25-185 (251)
78 3thx_A DNA mismatch repair pro 99.5 2.2E-14 7.5E-19 142.0 8.2 124 111-243 651-793 (934)
79 1e69_A Chromosome segregation 99.5 5.4E-14 1.9E-18 124.0 9.6 61 181-242 218-289 (322)
80 1tq4_A IIGP1, interferon-induc 99.5 8.5E-16 2.9E-20 139.8 -2.8 126 111-236 38-236 (413)
81 1tf7_A KAIC; homohexamer, hexa 99.5 3E-14 1E-18 133.6 7.7 118 116-235 275-417 (525)
82 3thx_B DNA mismatch repair pro 99.5 4.6E-14 1.6E-18 139.4 8.0 126 111-241 662-802 (918)
83 1ewq_A DNA mismatch repair pro 99.5 6.2E-14 2.1E-18 136.4 7.7 121 112-239 569-702 (765)
84 4a74_A DNA repair and recombin 99.5 1.5E-13 5.2E-18 114.2 9.0 129 117-245 20-194 (231)
85 1cr0_A DNA primase/helicase; R 99.5 2.8E-13 9.5E-18 117.7 10.6 124 111-235 24-197 (296)
86 3b9q_A Chloroplast SRP recepto 99.4 6.3E-14 2.1E-18 122.7 6.2 119 114-234 92-256 (302)
87 3qkt_A DNA double-strand break 99.4 8.4E-14 2.9E-18 123.7 7.0 63 181-243 247-322 (339)
88 2o8b_B DNA mismatch repair pro 99.4 1.9E-13 6.5E-18 136.7 8.4 131 111-245 771-922 (1022)
89 2og2_A Putative signal recogni 99.4 3.5E-13 1.2E-17 120.5 8.8 119 114-234 149-313 (359)
90 2w0m_A SSO2452; RECA, SSPF, un 99.4 1.4E-13 4.9E-18 114.3 5.3 123 112-235 12-168 (235)
91 1znw_A Guanylate kinase, GMP k 99.3 1.2E-14 4.3E-19 120.0 -5.8 30 118-147 16-45 (207)
92 3aez_A Pantothenate kinase; tr 99.3 4.4E-14 1.5E-18 124.2 -3.0 96 119-214 87-208 (312)
93 2kjq_A DNAA-related protein; s 99.3 2.9E-12 9.8E-17 100.8 7.2 83 121-234 35-124 (149)
94 3ec2_A DNA replication protein 99.3 4E-13 1.4E-17 108.2 1.1 101 119-235 35-143 (180)
95 1wb9_A DNA mismatch repair pro 99.3 7.2E-13 2.4E-17 129.6 3.0 125 111-240 597-735 (800)
96 3sop_A Neuronal-specific septi 99.3 5.8E-13 2E-17 114.8 2.0 107 124-234 4-149 (270)
97 2cvh_A DNA repair and recombin 99.3 7.5E-12 2.6E-16 103.2 8.6 115 118-236 16-157 (220)
98 1pzn_A RAD51, DNA repair and r 99.3 1.1E-11 3.7E-16 110.6 9.6 122 115-236 124-287 (349)
99 1nlf_A Regulatory protein REPA 99.2 2E-11 7E-16 105.1 8.3 118 118-238 26-184 (279)
100 2i3b_A HCR-ntpase, human cance 99.2 5E-13 1.7E-17 109.3 -1.9 26 122-147 1-26 (189)
101 1z6g_A Guanylate kinase; struc 99.2 1.5E-13 5.2E-18 114.6 -5.1 121 111-236 12-195 (218)
102 1rj9_A FTSY, signal recognitio 99.2 2.4E-11 8.2E-16 106.4 8.2 115 121-236 101-259 (304)
103 1tf7_A KAIC; homohexamer, hexa 99.2 1.6E-11 5.5E-16 115.1 7.4 123 110-237 26-187 (525)
104 2jeo_A Uridine-cytidine kinase 99.2 1.3E-12 4.5E-17 110.6 -0.1 127 111-242 14-173 (245)
105 2v9p_A Replication protein E1; 99.2 2E-12 6.9E-17 113.1 -1.1 105 99-217 106-228 (305)
106 1n0w_A DNA repair protein RAD5 99.1 1.7E-10 5.7E-15 96.5 9.1 120 117-236 19-175 (243)
107 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 4.1E-11 1.4E-15 94.1 3.6 67 178-245 53-132 (148)
108 1s96_A Guanylate kinase, GMP k 99.0 3.7E-09 1.3E-13 88.1 10.6 31 118-148 12-42 (219)
109 3lda_A DNA repair protein RAD5 98.9 1.7E-09 5.7E-14 98.0 8.5 119 117-235 173-328 (400)
110 1htw_A HI0065; nucleotide-bind 98.9 1.1E-09 3.8E-14 86.8 4.1 40 111-151 22-61 (158)
111 1lw7_A Transcriptional regulat 98.9 1.5E-10 5.2E-15 103.5 -1.6 39 112-150 158-198 (365)
112 3e70_C DPA, signal recognition 98.9 7.5E-09 2.6E-13 91.4 9.2 114 120-235 127-279 (328)
113 1vma_A Cell division protein F 98.8 1E-09 3.5E-14 96.1 3.3 89 119-211 101-197 (306)
114 2qnr_A Septin-2, protein NEDD5 98.8 1.7E-10 5.8E-15 100.8 -2.5 43 99-149 3-46 (301)
115 1pui_A ENGB, probable GTP-bind 98.8 2.2E-09 7.6E-14 87.6 2.5 44 98-146 7-50 (210)
116 1ls1_A Signal recognition part 98.8 9.3E-09 3.2E-13 89.5 6.6 96 121-217 97-198 (295)
117 3szr_A Interferon-induced GTP- 98.8 2.1E-09 7.3E-14 102.4 2.5 25 124-148 47-71 (608)
118 2qag_C Septin-7; cell cycle, c 98.7 9.8E-10 3.3E-14 100.1 -0.3 24 125-148 34-57 (418)
119 1sxj_E Activator 1 40 kDa subu 98.7 3.4E-08 1.2E-12 87.1 8.9 37 113-149 24-64 (354)
120 2zr9_A Protein RECA, recombina 98.7 3E-08 1E-12 88.3 8.2 113 118-236 57-199 (349)
121 3pih_A Uvrabc system protein A 98.7 6.6E-09 2.3E-13 102.7 4.2 67 179-246 461-536 (916)
122 4ad8_A DNA repair protein RECN 98.7 1.3E-08 4.4E-13 95.1 4.9 65 180-246 394-468 (517)
123 2ce7_A Cell division protein F 98.7 1.1E-07 3.7E-12 87.9 10.5 70 123-211 50-119 (476)
124 2yhs_A FTSY, cell division pro 98.6 2E-08 7E-13 92.8 5.3 44 113-157 284-327 (503)
125 2ygr_A Uvrabc system protein A 98.6 2.9E-08 9.8E-13 98.3 6.5 67 179-246 518-593 (993)
126 2dr3_A UPF0273 protein PH0284; 98.6 9.9E-08 3.4E-12 79.5 8.7 42 116-158 17-58 (247)
127 3kta_B Chromosome segregation 98.6 1.3E-08 4.5E-13 81.7 3.1 66 179-245 61-136 (173)
128 2px0_A Flagellar biosynthesis 98.6 6.2E-08 2.1E-12 84.3 6.9 41 120-160 103-143 (296)
129 2r6f_A Excinuclease ABC subuni 98.6 2.8E-08 9.7E-13 98.1 5.1 67 179-246 501-576 (972)
130 3tr0_A Guanylate kinase, GMP k 98.6 3.2E-08 1.1E-12 80.5 3.9 30 118-147 3-32 (205)
131 2vf7_A UVRA2, excinuclease ABC 98.5 3.5E-08 1.2E-12 96.7 4.4 67 179-246 376-451 (842)
132 2x8a_A Nuclear valosin-contain 98.5 1.6E-07 5.5E-12 80.7 7.8 77 114-211 38-114 (274)
133 1nij_A Hypothetical protein YJ 98.5 2.2E-08 7.5E-13 87.9 1.8 24 123-146 5-28 (318)
134 1fnn_A CDC6P, cell division co 98.5 4.5E-07 1.6E-11 80.5 9.9 119 124-244 46-178 (389)
135 3lnc_A Guanylate kinase, GMP k 98.5 3.6E-08 1.2E-12 82.2 2.6 36 112-147 17-53 (231)
136 2xau_A PRE-mRNA-splicing facto 98.5 1E-07 3.4E-12 93.2 6.0 131 112-242 99-260 (773)
137 3b9p_A CG5977-PA, isoform A; A 98.5 4.2E-07 1.4E-11 78.2 9.2 72 121-211 53-124 (297)
138 3c8u_A Fructokinase; YP_612366 98.5 6.1E-08 2.1E-12 79.6 3.6 38 119-157 19-56 (208)
139 1zu4_A FTSY; GTPase, signal re 98.5 7.7E-07 2.6E-11 78.2 10.4 98 114-212 97-203 (320)
140 3h4m_A Proteasome-activating n 98.5 1E-06 3.6E-11 75.2 10.8 73 120-211 49-121 (285)
141 3euj_A Chromosome partition pr 98.4 7.4E-08 2.5E-12 89.0 3.5 41 110-151 18-58 (483)
142 3hr8_A Protein RECA; alpha and 98.4 5E-07 1.7E-11 80.5 8.7 42 118-160 57-98 (356)
143 2b8t_A Thymidine kinase; deoxy 98.4 5.5E-07 1.9E-11 75.1 8.5 109 120-234 10-125 (223)
144 3k1j_A LON protease, ATP-depen 98.4 2.5E-07 8.5E-12 88.0 6.8 40 111-150 49-88 (604)
145 2obl_A ESCN; ATPase, hydrolase 98.4 1.5E-07 5.1E-12 83.7 4.5 49 99-149 50-98 (347)
146 2qm8_A GTPase/ATPase; G protei 98.4 1.4E-07 4.9E-12 83.4 4.4 46 111-157 44-89 (337)
147 1udx_A The GTP-binding protein 98.4 3.6E-07 1.2E-11 83.1 7.1 35 112-146 147-181 (416)
148 3cf0_A Transitional endoplasmi 98.4 6.7E-07 2.3E-11 77.6 8.3 74 119-211 46-119 (301)
149 1lvg_A Guanylate kinase, GMP k 98.4 9.9E-08 3.4E-12 77.9 2.8 28 120-147 2-29 (198)
150 1zp6_A Hypothetical protein AT 98.4 1.4E-07 4.7E-12 75.9 3.5 27 119-145 6-32 (191)
151 3a00_A Guanylate kinase, GMP k 98.4 1.3E-07 4.4E-12 76.2 3.3 28 122-149 1-28 (186)
152 1sq5_A Pantothenate kinase; P- 98.4 1.9E-07 6.6E-12 81.5 4.4 36 120-156 78-115 (308)
153 1lv7_A FTSH; alpha/beta domain 98.4 3.3E-06 1.1E-10 71.1 11.5 69 122-209 45-113 (257)
154 2dpy_A FLII, flagellum-specifi 98.4 2.3E-07 8E-12 84.9 4.5 57 99-158 136-192 (438)
155 2qby_A CDC6 homolog 1, cell di 98.4 3.2E-07 1.1E-11 81.1 5.2 122 122-245 45-183 (386)
156 3asz_A Uridine kinase; cytidin 98.4 1.5E-07 5.3E-12 76.9 2.8 30 119-148 3-32 (211)
157 2z4s_A Chromosomal replication 98.3 1.9E-07 6.5E-12 85.5 3.4 97 123-234 131-236 (440)
158 1ixz_A ATP-dependent metallopr 98.3 4.4E-07 1.5E-11 76.5 5.3 31 115-147 44-74 (254)
159 1kgd_A CASK, peripheral plasma 98.3 3E-07 1E-11 73.8 3.9 28 121-148 4-31 (180)
160 2j41_A Guanylate kinase; GMP, 98.3 3.6E-07 1.2E-11 74.1 4.1 30 119-148 3-32 (207)
161 2qz4_A Paraplegin; AAA+, SPG7, 98.3 3.5E-06 1.2E-10 70.8 10.4 73 120-211 37-109 (262)
162 4b4t_J 26S protease regulatory 98.3 1.3E-06 4.6E-11 78.8 7.7 74 119-211 179-252 (405)
163 2qag_B Septin-6, protein NEDD5 98.3 3.1E-07 1.1E-11 83.6 3.5 35 112-146 30-66 (427)
164 2r6a_A DNAB helicase, replicat 98.3 1.4E-06 4.6E-11 80.1 7.8 47 112-158 193-239 (454)
165 1w1w_A Structural maintenance 98.3 5.4E-07 1.8E-11 82.1 5.1 63 180-242 331-404 (430)
166 3uie_A Adenylyl-sulfate kinase 98.3 4E-07 1.4E-11 74.1 3.8 46 112-158 15-60 (200)
167 1iy2_A ATP-dependent metallopr 98.3 7.6E-07 2.6E-11 76.2 5.7 31 115-147 68-98 (278)
168 1ypw_A Transitional endoplasmi 98.3 2.2E-06 7.5E-11 84.1 9.4 73 119-210 235-307 (806)
169 1xwi_A SKD1 protein; VPS4B, AA 98.3 3.7E-06 1.3E-10 73.7 9.7 73 121-211 44-116 (322)
170 4b4t_L 26S protease subunit RP 98.3 2.1E-06 7E-11 78.5 8.2 74 119-211 212-285 (437)
171 3kta_A Chromosome segregation 98.3 9.6E-07 3.3E-11 70.4 5.3 49 97-148 4-52 (182)
172 3bos_A Putative DNA replicatio 98.2 1.6E-06 5.5E-11 71.5 6.7 37 121-158 51-87 (242)
173 3auy_A DNA double-strand break 98.2 5.7E-07 1.9E-11 80.5 4.0 65 180-245 278-355 (371)
174 4b4t_M 26S protease regulatory 98.2 2.1E-06 7.2E-11 78.3 7.7 73 119-210 212-284 (434)
175 3tau_A Guanylate kinase, GMP k 98.2 8.6E-07 2.9E-11 72.7 4.2 29 120-148 6-34 (208)
176 2r8r_A Sensor protein; KDPD, P 98.2 1.1E-06 3.7E-11 73.4 4.5 115 121-240 4-135 (228)
177 4eun_A Thermoresistant glucoki 98.2 6.8E-07 2.3E-11 72.7 3.3 27 120-146 27-53 (200)
178 1l8q_A Chromosomal replication 98.2 9.4E-07 3.2E-11 77.2 4.2 36 122-158 37-72 (324)
179 4b4t_K 26S protease regulatory 98.2 3.4E-06 1.1E-10 76.9 7.9 73 119-210 203-275 (428)
180 3kl4_A SRP54, signal recogniti 98.2 2.2E-06 7.4E-11 78.3 6.6 90 121-211 96-190 (433)
181 3syl_A Protein CBBX; photosynt 98.2 1.3E-05 4.5E-10 69.0 11.2 27 122-148 67-93 (309)
182 4b4t_H 26S protease regulatory 98.2 3.3E-06 1.1E-10 77.3 7.6 74 119-211 240-313 (467)
183 3nwj_A ATSK2; P loop, shikimat 98.2 5.4E-07 1.9E-11 76.5 2.2 50 97-148 20-74 (250)
184 4b4t_I 26S protease regulatory 98.2 3.5E-06 1.2E-10 76.5 7.4 74 119-211 213-286 (437)
185 2o5v_A DNA replication and rep 98.2 1.6E-06 5.6E-11 77.3 5.2 52 183-234 266-330 (359)
186 3vaa_A Shikimate kinase, SK; s 98.1 9.5E-07 3.3E-11 71.8 3.3 37 111-147 14-50 (199)
187 1u94_A RECA protein, recombina 98.1 6.5E-06 2.2E-10 73.3 8.7 114 118-236 59-201 (356)
188 1u0l_A Probable GTPase ENGC; p 98.1 1.2E-06 4.2E-11 76.1 3.7 33 119-151 166-198 (301)
189 4fcw_A Chaperone protein CLPB; 98.1 2.4E-06 8.4E-11 73.7 5.4 35 123-158 48-82 (311)
190 1kag_A SKI, shikimate kinase I 98.1 1.4E-06 4.7E-11 68.8 3.4 28 121-148 3-30 (173)
191 2bdt_A BH3686; alpha-beta prot 98.1 1.3E-06 4.3E-11 70.2 3.1 23 122-144 2-24 (189)
192 1rz3_A Hypothetical protein rb 98.1 1.5E-06 5.2E-11 70.8 3.6 38 119-157 19-56 (201)
193 1jbk_A CLPB protein; beta barr 98.1 8.8E-06 3E-10 64.2 8.0 26 122-147 43-68 (195)
194 2bbw_A Adenylate kinase 4, AK4 98.1 1.7E-06 5.7E-11 72.7 3.7 29 121-149 26-57 (246)
195 1qhl_A Protein (cell division 98.1 2.5E-07 8.4E-12 77.5 -1.4 32 119-151 25-56 (227)
196 2qp9_X Vacuolar protein sortin 98.1 1.1E-05 3.9E-10 71.5 9.3 72 121-211 83-154 (355)
197 3m6a_A ATP-dependent protease 98.1 1.3E-06 4.3E-11 82.2 3.1 28 121-148 107-134 (543)
198 1v5w_A DMC1, meiotic recombina 98.1 2.1E-05 7E-10 69.6 10.8 43 118-160 118-165 (343)
199 2z43_A DNA repair and recombin 98.1 1.1E-05 3.8E-10 70.7 8.7 44 117-160 102-150 (324)
200 3t15_A Ribulose bisphosphate c 98.1 5E-06 1.7E-10 71.9 6.3 26 122-147 36-61 (293)
201 2ius_A DNA translocase FTSK; n 98.1 6.4E-06 2.2E-10 76.6 7.1 29 116-144 161-189 (512)
202 1d2n_A N-ethylmaleimide-sensit 98.0 1E-05 3.5E-10 68.7 7.9 71 122-210 64-134 (272)
203 1knq_A Gluconate kinase; ALFA/ 98.0 2E-06 6.7E-11 68.1 3.1 27 120-146 6-32 (175)
204 2p65_A Hypothetical protein PF 98.0 7.3E-06 2.5E-10 64.6 6.3 27 122-148 43-69 (187)
205 1njg_A DNA polymerase III subu 98.0 2E-05 6.8E-10 64.3 9.1 36 113-148 33-71 (250)
206 2rcn_A Probable GTPase ENGC; Y 98.0 3.2E-06 1.1E-10 75.2 4.6 37 112-149 206-243 (358)
207 2dhr_A FTSH; AAA+ protein, hex 98.0 3.6E-06 1.2E-10 78.2 4.7 24 124-147 66-89 (499)
208 3ney_A 55 kDa erythrocyte memb 98.0 3.2E-06 1.1E-10 69.2 3.8 28 120-147 17-44 (197)
209 2vp4_A Deoxynucleoside kinase; 98.0 3.1E-06 1.1E-10 70.4 3.8 27 119-145 17-43 (230)
210 3d8b_A Fidgetin-like protein 1 98.0 1.3E-05 4.5E-10 71.1 8.1 71 120-209 115-185 (357)
211 4e22_A Cytidylate kinase; P-lo 98.0 2.8E-06 9.4E-11 71.9 3.4 32 118-149 23-57 (252)
212 3eie_A Vacuolar protein sortin 98.0 6.6E-06 2.3E-10 71.9 5.6 71 122-211 51-121 (322)
213 1t9h_A YLOQ, probable GTPase E 98.0 1.1E-06 3.7E-11 76.8 0.4 31 119-149 170-200 (307)
214 2orw_A Thymidine kinase; TMTK, 98.0 4.6E-06 1.6E-10 67.3 4.1 107 121-235 2-113 (184)
215 3cr8_A Sulfate adenylyltranfer 98.0 2.5E-06 8.4E-11 80.2 2.8 42 118-159 365-406 (552)
216 2yv5_A YJEQ protein; hydrolase 98.0 5.2E-06 1.8E-10 72.2 4.6 31 120-151 163-193 (302)
217 4a1f_A DNAB helicase, replicat 98.0 2.1E-05 7.3E-10 69.4 8.3 117 112-233 36-164 (338)
218 2zan_A Vacuolar protein sortin 98.0 1.9E-05 6.4E-10 72.3 8.2 73 121-211 166-238 (444)
219 1xp8_A RECA protein, recombina 97.9 4.1E-05 1.4E-09 68.4 10.2 114 118-236 70-212 (366)
220 3tqc_A Pantothenate kinase; bi 97.9 5.9E-06 2E-10 72.5 4.6 35 124-158 94-129 (321)
221 1in4_A RUVB, holliday junction 97.9 2.2E-06 7.6E-11 75.4 1.7 36 112-147 34-76 (334)
222 3hu3_A Transitional endoplasmi 97.9 3.2E-05 1.1E-09 71.7 9.6 71 120-209 236-306 (489)
223 2f1r_A Molybdopterin-guanine d 97.9 2.2E-06 7.4E-11 68.6 1.4 27 123-149 3-29 (171)
224 2r62_A Cell division protease 97.9 2.4E-06 8.3E-11 72.3 1.8 26 122-147 44-69 (268)
225 1xx6_A Thymidine kinase; NESG, 97.9 2.3E-05 7.8E-10 63.7 7.5 109 120-235 6-118 (191)
226 2qt1_A Nicotinamide riboside k 97.9 5.7E-06 1.9E-10 67.4 3.6 31 117-147 16-46 (207)
227 1svm_A Large T antigen; AAA+ f 97.9 5.9E-06 2E-10 74.1 4.0 35 112-146 159-193 (377)
228 3cf2_A TER ATPase, transitiona 97.9 1.2E-05 4.2E-10 78.5 6.4 73 120-211 236-308 (806)
229 2v1u_A Cell division control p 97.9 5.3E-06 1.8E-10 73.3 3.4 27 121-147 43-69 (387)
230 3io5_A Recombination and repai 97.9 4.8E-05 1.6E-09 66.5 9.2 121 119-244 26-181 (333)
231 2pez_A Bifunctional 3'-phospho 97.9 7.6E-06 2.6E-10 65.1 3.8 36 121-157 4-39 (179)
232 3vfd_A Spastin; ATPase, microt 97.9 3.5E-05 1.2E-09 69.1 8.5 72 121-211 147-218 (389)
233 2o5v_A DNA replication and rep 97.9 9.8E-06 3.4E-10 72.2 4.5 43 97-144 6-48 (359)
234 1w1w_A Structural maintenance 97.8 1.2E-05 4E-10 73.2 4.9 31 119-149 23-53 (430)
235 2chg_A Replication factor C sm 97.8 6.6E-05 2.2E-09 60.5 8.9 34 114-147 28-63 (226)
236 3bh0_A DNAB-like replicative h 97.8 3.9E-05 1.3E-09 66.9 7.7 118 112-234 58-190 (315)
237 3pvs_A Replication-associated 97.8 6.6E-05 2.3E-09 68.8 9.5 36 113-148 39-76 (447)
238 3dm5_A SRP54, signal recogniti 97.8 3.4E-05 1.2E-09 70.5 7.5 89 122-211 100-193 (443)
239 2qgz_A Helicase loader, putati 97.8 1.3E-05 4.5E-10 69.8 4.5 36 122-158 152-188 (308)
240 2c9o_A RUVB-like 1; hexameric 97.8 2.1E-05 7.3E-10 72.1 5.7 73 121-211 62-137 (456)
241 2yvu_A Probable adenylyl-sulfa 97.8 1.3E-05 4.6E-10 64.0 3.8 38 119-157 10-47 (186)
242 2qor_A Guanylate kinase; phosp 97.8 1.3E-05 4.3E-10 65.3 3.5 29 119-147 9-37 (204)
243 1cke_A CK, MSSA, protein (cyti 97.8 1.2E-05 4.1E-10 66.1 3.2 25 122-146 5-29 (227)
244 2p67_A LAO/AO transport system 97.8 1.5E-05 5.3E-10 70.3 4.1 46 112-158 46-91 (341)
245 2www_A Methylmalonic aciduria 97.8 1.6E-05 5.6E-10 70.5 4.2 35 122-157 74-108 (349)
246 1m7g_A Adenylylsulfate kinase; 97.8 1.1E-05 3.8E-10 66.0 2.9 41 118-158 21-61 (211)
247 3llm_A ATP-dependent RNA helic 97.7 3.4E-05 1.2E-09 64.2 5.9 30 115-144 69-98 (235)
248 3t34_A Dynamin-related protein 97.7 0.00022 7.6E-09 63.1 11.0 22 124-145 36-57 (360)
249 2e87_A Hypothetical protein PH 97.7 9.8E-05 3.4E-09 65.4 8.6 24 123-146 168-191 (357)
250 1w4r_A Thymidine kinase; type 97.7 7.2E-05 2.5E-09 60.8 7.0 108 121-237 19-129 (195)
251 2vhj_A Ntpase P4, P4; non- hyd 97.7 5.1E-05 1.7E-09 66.5 6.2 29 117-145 118-146 (331)
252 1oix_A RAS-related protein RAB 97.7 2.3E-05 7.8E-10 62.9 3.6 25 124-148 31-55 (191)
253 1um8_A ATP-dependent CLP prote 97.7 0.00027 9.4E-09 62.7 11.0 27 121-147 71-97 (376)
254 2j9r_A Thymidine kinase; TK1, 97.7 5E-05 1.7E-09 62.7 5.6 109 120-235 26-138 (214)
255 2wji_A Ferrous iron transport 97.7 0.00038 1.3E-08 54.0 10.6 24 124-147 5-28 (165)
256 1jjv_A Dephospho-COA kinase; P 97.7 2.2E-05 7.5E-10 63.7 3.4 21 124-144 4-24 (206)
257 1j8m_F SRP54, signal recogniti 97.7 4.1E-05 1.4E-09 66.4 5.3 43 116-160 93-135 (297)
258 2i1q_A DNA repair and recombin 97.7 9.4E-05 3.2E-09 64.5 7.5 29 117-145 93-121 (322)
259 4eaq_A DTMP kinase, thymidylat 97.6 4.3E-05 1.5E-09 63.7 4.9 37 119-157 23-59 (229)
260 1qhx_A CPT, protein (chloramph 97.6 3.2E-05 1.1E-09 61.0 3.8 26 122-147 3-28 (178)
261 2if2_A Dephospho-COA kinase; a 97.6 2.5E-05 8.5E-10 63.2 3.2 21 124-144 3-23 (204)
262 3cmu_A Protein RECA, recombina 97.6 0.00016 5.5E-09 76.5 9.7 87 119-210 1424-1515(2050)
263 3e2i_A Thymidine kinase; Zn-bi 97.6 8E-05 2.7E-09 61.5 5.9 108 120-235 26-138 (219)
264 1odf_A YGR205W, hypothetical 3 97.6 2.1E-05 7.3E-10 68.0 2.6 28 121-148 30-57 (290)
265 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.6E-05 1.2E-09 59.8 3.6 24 123-146 24-47 (149)
266 1ypw_A Transitional endoplasmi 97.6 2.4E-05 8.2E-10 76.7 3.1 73 119-210 508-580 (806)
267 2f9l_A RAB11B, member RAS onco 97.6 3.5E-05 1.2E-09 62.0 3.5 24 124-147 7-30 (199)
268 2qby_B CDC6 homolog 3, cell di 97.6 6.5E-05 2.2E-09 66.4 5.6 25 122-146 45-69 (384)
269 1np6_A Molybdopterin-guanine d 97.6 3.9E-05 1.3E-09 61.3 3.7 32 123-155 7-38 (174)
270 3cmw_A Protein RECA, recombina 97.6 0.00024 8.1E-09 74.3 10.3 112 119-235 729-869 (1706)
271 3kb2_A SPBC2 prophage-derived 97.6 3.3E-05 1.1E-09 60.4 3.1 24 124-147 3-26 (173)
272 3cm0_A Adenylate kinase; ATP-b 97.6 3.6E-05 1.2E-09 61.2 3.2 26 121-146 3-28 (186)
273 1qvr_A CLPB protein; coiled co 97.6 0.00012 4.1E-09 72.2 7.5 36 123-159 589-624 (854)
274 1y63_A LMAJ004144AAA protein; 97.6 4.8E-05 1.6E-09 60.8 3.9 28 118-145 6-33 (184)
275 1sxj_C Activator 1 40 kDa subu 97.6 2.8E-05 9.7E-10 68.2 2.7 37 112-148 34-72 (340)
276 3u61_B DNA polymerase accessor 97.5 0.00041 1.4E-08 60.1 9.9 34 114-147 37-73 (324)
277 1ni3_A YCHF GTPase, YCHF GTP-b 97.5 4.5E-05 1.5E-09 68.7 3.5 27 118-144 16-42 (392)
278 1qvr_A CLPB protein; coiled co 97.5 0.00036 1.2E-08 68.8 10.3 103 122-237 191-311 (854)
279 3t61_A Gluconokinase; PSI-biol 97.5 4.6E-05 1.6E-09 61.7 3.3 26 122-147 18-43 (202)
280 1sxj_A Activator 1 95 kDa subu 97.5 0.00039 1.3E-08 64.7 9.8 34 122-159 77-110 (516)
281 3cf2_A TER ATPase, transitiona 97.5 7.7E-05 2.6E-09 72.9 5.0 73 120-211 509-581 (806)
282 1jr3_A DNA polymerase III subu 97.5 0.0003 1E-08 61.8 8.3 36 113-148 26-64 (373)
283 2dy1_A Elongation factor G; tr 97.5 0.00035 1.2E-08 67.1 9.4 117 119-238 6-139 (665)
284 1ojl_A Transcriptional regulat 97.5 0.00015 5.3E-09 62.8 6.2 30 119-148 22-51 (304)
285 3cmw_A Protein RECA, recombina 97.5 0.00029 9.9E-09 73.7 9.1 112 119-235 380-520 (1706)
286 2gj8_A MNME, tRNA modification 97.5 5.9E-05 2E-09 59.4 3.2 26 121-146 3-28 (172)
287 1sxj_B Activator 1 37 kDa subu 97.5 0.00022 7.6E-09 61.2 7.1 34 114-147 32-67 (323)
288 3pxi_A Negative regulator of g 97.5 0.00025 8.6E-09 68.9 8.2 35 124-159 523-557 (758)
289 1kht_A Adenylate kinase; phosp 97.5 7.1E-05 2.4E-09 59.5 3.6 26 122-147 3-28 (192)
290 3pfi_A Holliday junction ATP-d 97.5 0.00063 2.2E-08 59.2 10.0 25 123-147 56-80 (338)
291 1xjc_A MOBB protein homolog; s 97.4 7.6E-05 2.6E-09 59.4 3.6 35 123-158 5-39 (169)
292 2w58_A DNAI, primosome compone 97.4 9.2E-05 3.2E-09 59.7 4.1 34 123-157 55-88 (202)
293 2rhm_A Putative kinase; P-loop 97.4 6.9E-05 2.4E-09 59.7 3.3 27 120-146 3-29 (193)
294 3lw7_A Adenylate kinase relate 97.4 7E-05 2.4E-09 58.3 3.3 20 123-142 2-21 (179)
295 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00057 2E-08 58.9 9.2 26 122-147 38-63 (324)
296 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00041 1.4E-08 67.4 9.0 31 124-158 490-520 (758)
297 2plr_A DTMP kinase, probable t 97.4 0.00013 4.4E-09 58.9 4.6 28 121-148 3-30 (213)
298 3iij_A Coilin-interacting nucl 97.4 8.6E-05 2.9E-09 58.8 3.5 27 120-146 9-35 (180)
299 3trf_A Shikimate kinase, SK; a 97.4 9.4E-05 3.2E-09 58.7 3.6 26 122-147 5-30 (185)
300 2ze6_A Isopentenyl transferase 97.4 7.1E-05 2.4E-09 63.2 3.0 24 124-147 3-26 (253)
301 2v54_A DTMP kinase, thymidylat 97.4 0.00011 3.8E-09 59.1 4.0 26 121-146 3-28 (204)
302 1ly1_A Polynucleotide kinase; 97.4 9.2E-05 3.1E-09 58.2 3.5 22 123-144 3-24 (181)
303 2ga8_A Hypothetical 39.9 kDa p 97.4 7.8E-05 2.7E-09 66.1 3.2 36 112-147 12-49 (359)
304 4ag6_A VIRB4 ATPase, type IV s 97.4 0.00012 4.1E-09 65.5 4.5 38 121-159 34-71 (392)
305 3pxg_A Negative regulator of g 97.4 0.00019 6.4E-09 66.0 5.9 96 121-237 200-303 (468)
306 1via_A Shikimate kinase; struc 97.4 7.7E-05 2.6E-09 58.9 2.7 24 124-147 6-29 (175)
307 3e1s_A Exodeoxyribonuclease V, 97.4 0.00056 1.9E-08 64.5 9.0 36 121-157 203-238 (574)
308 2jaq_A Deoxyguanosine kinase; 97.4 8.9E-05 3E-09 59.5 3.1 24 124-147 2-25 (205)
309 2p5t_B PEZT; postsegregational 97.4 6.8E-05 2.3E-09 63.2 2.5 28 120-147 30-57 (253)
310 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00055 1.9E-08 66.4 9.1 27 121-147 206-232 (758)
311 2v3c_C SRP54, signal recogniti 97.3 0.00015 5.3E-09 66.0 4.5 37 123-160 100-136 (432)
312 2c95_A Adenylate kinase 1; tra 97.3 0.00011 3.8E-09 58.7 3.1 29 119-147 6-34 (196)
313 1nks_A Adenylate kinase; therm 97.3 0.00014 4.7E-09 57.8 3.7 34 124-158 3-36 (194)
314 2q6t_A DNAB replication FORK h 97.3 0.0013 4.5E-08 59.9 10.7 46 112-157 190-235 (444)
315 2orv_A Thymidine kinase; TP4A 97.3 0.00064 2.2E-08 56.7 7.7 107 121-236 18-127 (234)
316 3qks_A DNA double-strand break 97.3 0.00014 4.7E-09 59.4 3.6 24 123-146 24-47 (203)
317 2ffh_A Protein (FFH); SRP54, s 97.3 0.00017 5.8E-09 65.6 4.5 38 121-159 97-134 (425)
318 4dcu_A GTP-binding protein ENG 97.3 0.00048 1.7E-08 63.0 7.6 22 124-145 25-46 (456)
319 1q3t_A Cytidylate kinase; nucl 97.3 0.00015 5.1E-09 60.3 3.8 28 119-146 13-40 (236)
320 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.6E-09 58.9 3.3 24 124-147 3-26 (186)
321 3n70_A Transport activator; si 97.3 0.00022 7.4E-09 54.8 4.3 30 119-148 21-50 (145)
322 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5.1E-09 57.7 3.5 25 122-146 3-27 (196)
323 2wwf_A Thymidilate kinase, put 97.3 0.00015 5.3E-09 58.6 3.6 28 120-147 8-35 (212)
324 1vht_A Dephospho-COA kinase; s 97.3 0.00016 5.3E-09 59.2 3.6 23 122-144 4-26 (218)
325 3cmu_A Protein RECA, recombina 97.3 0.0007 2.4E-08 71.7 9.2 112 119-235 380-520 (2050)
326 1gvn_B Zeta; postsegregational 97.2 0.00014 4.9E-09 62.5 3.3 26 122-147 33-58 (287)
327 2wjg_A FEOB, ferrous iron tran 97.2 0.00017 5.7E-09 57.0 3.5 22 124-145 9-30 (188)
328 2bwj_A Adenylate kinase 5; pho 97.2 0.00011 3.9E-09 58.7 2.5 29 119-147 9-37 (199)
329 1aky_A Adenylate kinase; ATP:A 97.2 0.00017 5.9E-09 59.1 3.4 27 121-147 3-29 (220)
330 2z0h_A DTMP kinase, thymidylat 97.2 0.00023 7.7E-09 56.9 4.1 33 124-157 2-34 (197)
331 1nn5_A Similar to deoxythymidy 97.2 0.00019 6.3E-09 58.2 3.5 29 120-148 7-35 (215)
332 2zej_A Dardarin, leucine-rich 97.2 0.00015 5.2E-09 57.4 2.9 23 124-146 4-26 (184)
333 2vli_A Antibiotic resistance p 97.2 0.00013 4.6E-09 57.6 2.4 27 121-147 4-30 (183)
334 1gtv_A TMK, thymidylate kinase 97.2 6E-05 2.1E-09 61.2 0.3 25 124-148 2-26 (214)
335 1uf9_A TT1252 protein; P-loop, 97.2 0.0002 6.9E-09 57.5 3.4 24 122-145 8-31 (203)
336 2cdn_A Adenylate kinase; phosp 97.2 0.00025 8.4E-09 57.2 3.8 26 122-147 20-45 (201)
337 1ega_A Protein (GTP-binding pr 97.2 0.00016 5.6E-09 62.6 2.9 24 123-146 9-32 (301)
338 1zuh_A Shikimate kinase; alpha 97.2 0.00025 8.4E-09 55.5 3.6 25 123-147 8-32 (168)
339 1zd8_A GTP:AMP phosphotransfer 97.2 0.00022 7.6E-09 58.7 3.4 27 121-147 6-32 (227)
340 3r20_A Cytidylate kinase; stru 97.1 0.0002 6.9E-09 59.9 3.1 26 122-147 9-34 (233)
341 3fb4_A Adenylate kinase; psych 97.1 0.00024 8.2E-09 57.9 3.4 23 124-146 2-24 (216)
342 3dl0_A Adenylate kinase; phosp 97.1 0.00025 8.5E-09 57.8 3.5 24 124-147 2-25 (216)
343 2iyv_A Shikimate kinase, SK; t 97.1 0.0002 6.8E-09 56.8 2.8 25 123-147 3-27 (184)
344 1a5t_A Delta prime, HOLB; zinc 97.1 0.0028 9.5E-08 55.4 10.3 35 114-148 13-50 (334)
345 1e6c_A Shikimate kinase; phosp 97.1 0.00027 9.3E-09 55.2 3.2 25 123-147 3-27 (173)
346 2bjv_A PSP operon transcriptio 97.1 0.00052 1.8E-08 57.8 5.2 40 118-158 25-64 (265)
347 3ake_A Cytidylate kinase; CMP 97.1 0.00025 8.5E-09 57.1 3.0 24 124-147 4-27 (208)
348 1sxj_D Activator 1 41 kDa subu 97.1 0.00025 8.4E-09 61.9 3.2 36 112-147 46-83 (353)
349 3lxx_A GTPase IMAP family memb 97.1 0.0003 1E-08 58.4 3.5 25 124-148 31-55 (239)
350 1ukz_A Uridylate kinase; trans 97.1 0.00033 1.1E-08 56.4 3.6 24 123-146 16-39 (203)
351 1zak_A Adenylate kinase; ATP:A 97.1 0.00024 8.3E-09 58.3 2.8 26 122-147 5-30 (222)
352 1q57_A DNA primase/helicase; d 97.1 0.0046 1.6E-07 57.1 11.7 40 118-157 238-277 (503)
353 3umf_A Adenylate kinase; rossm 97.1 0.00035 1.2E-08 57.8 3.7 30 118-147 25-54 (217)
354 2pbr_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 55.8 3.4 24 124-147 2-25 (195)
355 3k53_A Ferrous iron transport 97.1 0.00028 9.5E-09 59.9 3.2 24 124-147 5-28 (271)
356 2pt5_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 54.5 3.5 24 124-147 2-25 (168)
357 3ice_A Transcription terminati 97.1 0.00033 1.1E-08 62.8 3.7 35 114-148 166-200 (422)
358 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00034 1.2E-08 59.1 3.6 26 122-147 4-29 (260)
359 1qf9_A UMP/CMP kinase, protein 97.0 0.00032 1.1E-08 55.6 3.1 25 123-147 7-31 (194)
360 1z2a_A RAS-related protein RAB 97.0 0.00038 1.3E-08 53.5 3.4 23 124-146 7-29 (168)
361 3auy_A DNA double-strand break 97.0 0.00052 1.8E-08 61.1 4.6 43 97-144 5-47 (371)
362 2ged_A SR-beta, signal recogni 97.0 0.00039 1.3E-08 55.1 3.5 23 124-146 50-72 (193)
363 2dyk_A GTP-binding protein; GT 97.0 0.00043 1.5E-08 52.9 3.5 23 124-146 3-25 (161)
364 1kao_A RAP2A; GTP-binding prot 97.0 0.00046 1.6E-08 52.8 3.5 23 124-146 5-27 (167)
365 2ce2_X GTPase HRAS; signaling 97.0 0.00041 1.4E-08 52.9 3.1 23 124-146 5-27 (166)
366 3tlx_A Adenylate kinase 2; str 97.0 0.00046 1.6E-08 57.7 3.6 27 120-146 27-53 (243)
367 2erx_A GTP-binding protein DI- 97.0 0.00048 1.6E-08 53.1 3.5 22 124-145 5-26 (172)
368 4ad8_A DNA repair protein RECN 97.0 0.00015 5E-09 67.5 0.6 46 97-147 40-85 (517)
369 1u8z_A RAS-related protein RAL 97.0 0.00047 1.6E-08 52.8 3.4 23 124-146 6-28 (168)
370 3be4_A Adenylate kinase; malar 97.0 0.00045 1.5E-08 56.5 3.5 26 122-147 5-30 (217)
371 1z0j_A RAB-22, RAS-related pro 97.0 0.00048 1.7E-08 53.0 3.5 23 124-146 8-30 (170)
372 3a8t_A Adenylate isopentenyltr 96.9 0.00052 1.8E-08 60.4 4.0 27 121-147 39-65 (339)
373 1tue_A Replication protein E1; 96.9 0.00034 1.2E-08 57.4 2.5 29 119-147 55-83 (212)
374 1uj2_A Uridine-cytidine kinase 96.9 0.00047 1.6E-08 57.8 3.4 24 124-147 24-47 (252)
375 2nzj_A GTP-binding protein REM 96.9 0.00051 1.8E-08 53.2 3.4 23 124-146 6-28 (175)
376 1ek0_A Protein (GTP-binding pr 96.9 0.00053 1.8E-08 52.7 3.4 23 124-146 5-27 (170)
377 3co5_A Putative two-component 96.9 0.00022 7.6E-09 54.6 1.2 28 119-146 24-51 (143)
378 2grj_A Dephospho-COA kinase; T 96.9 0.00051 1.7E-08 55.6 3.4 24 123-146 13-36 (192)
379 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00056 1.9E-08 53.2 3.5 23 124-146 9-31 (177)
380 1z08_A RAS-related protein RAB 96.9 0.00056 1.9E-08 52.7 3.4 23 124-146 8-30 (170)
381 1ky3_A GTP-binding protein YPT 96.9 0.00056 1.9E-08 53.2 3.5 23 124-146 10-32 (182)
382 4edh_A DTMP kinase, thymidylat 96.9 0.00073 2.5E-08 55.6 4.3 38 121-159 5-42 (213)
383 2xb4_A Adenylate kinase; ATP-b 96.9 0.00053 1.8E-08 56.5 3.4 23 124-146 2-24 (223)
384 1g16_A RAS-related protein SEC 96.9 0.00051 1.7E-08 52.9 3.1 23 124-146 5-27 (170)
385 1c1y_A RAS-related protein RAP 96.9 0.00058 2E-08 52.4 3.4 23 124-146 5-27 (167)
386 1ak2_A Adenylate kinase isoenz 96.9 0.00063 2.1E-08 56.3 3.8 27 121-147 15-41 (233)
387 3q85_A GTP-binding protein REM 96.9 0.00058 2E-08 52.6 3.4 23 124-146 4-26 (169)
388 1e4v_A Adenylate kinase; trans 96.9 0.0005 1.7E-08 56.0 3.1 23 124-146 2-24 (214)
389 1svi_A GTP-binding protein YSX 96.9 0.00049 1.7E-08 54.5 3.0 23 124-146 25-47 (195)
390 2qmh_A HPR kinase/phosphorylas 96.9 0.00058 2E-08 55.7 3.4 26 121-146 33-58 (205)
391 3sr0_A Adenylate kinase; phosp 96.9 0.00058 2E-08 55.9 3.4 24 124-147 2-25 (206)
392 2lkc_A Translation initiation 96.9 0.00074 2.5E-08 52.5 3.9 25 121-145 7-31 (178)
393 3q72_A GTP-binding protein RAD 96.9 0.00045 1.5E-08 53.1 2.6 23 124-146 4-26 (166)
394 3tw8_B RAS-related protein RAB 96.9 0.00052 1.8E-08 53.4 2.9 23 124-146 11-33 (181)
395 1r2q_A RAS-related protein RAB 96.8 0.00066 2.2E-08 52.1 3.4 22 124-145 8-29 (170)
396 3pxi_A Negative regulator of g 96.8 0.0014 4.7E-08 63.7 6.4 95 121-236 200-302 (758)
397 2ohf_A Protein OLA1, GTP-bindi 96.8 0.00056 1.9E-08 61.5 3.4 31 115-145 15-45 (396)
398 2fn4_A P23, RAS-related protei 96.8 0.00061 2.1E-08 53.0 3.2 23 124-146 11-33 (181)
399 3pqc_A Probable GTP-binding pr 96.8 0.00056 1.9E-08 54.0 3.0 23 124-146 25-47 (195)
400 3eph_A TRNA isopentenyltransfe 96.8 0.0053 1.8E-07 55.3 9.6 25 123-147 3-27 (409)
401 4dsu_A GTPase KRAS, isoform 2B 96.8 0.0007 2.4E-08 53.1 3.5 23 124-146 6-28 (189)
402 3b1v_A Ferrous iron uptake tra 96.8 0.00064 2.2E-08 58.0 3.4 23 124-146 5-27 (272)
403 2qtf_A Protein HFLX, GTP-bindi 96.8 0.00057 1.9E-08 60.9 3.2 24 124-147 181-204 (364)
404 3clv_A RAB5 protein, putative; 96.8 0.00072 2.5E-08 53.5 3.5 23 124-146 9-31 (208)
405 3p32_A Probable GTPase RV1496/ 96.8 0.00078 2.7E-08 59.6 4.0 35 123-158 80-114 (355)
406 3d3q_A TRNA delta(2)-isopenten 96.8 0.00065 2.2E-08 59.9 3.4 25 123-147 8-32 (340)
407 3bc1_A RAS-related protein RAB 96.8 0.00074 2.5E-08 53.1 3.4 23 124-146 13-35 (195)
408 1ofh_A ATP-dependent HSL prote 96.8 0.00059 2E-08 58.3 3.0 26 122-147 50-75 (310)
409 3lxw_A GTPase IMAP family memb 96.8 0.00072 2.4E-08 56.7 3.5 24 124-147 23-46 (247)
410 1upt_A ARL1, ADP-ribosylation 96.8 0.00076 2.6E-08 52.0 3.4 23 123-145 8-30 (171)
411 1mky_A Probable GTP-binding pr 96.8 0.00069 2.4E-08 61.7 3.5 23 124-146 182-204 (439)
412 2oil_A CATX-8, RAS-related pro 96.8 0.00077 2.6E-08 53.4 3.4 23 124-146 27-49 (193)
413 2hxs_A RAB-26, RAS-related pro 96.8 0.00084 2.9E-08 52.2 3.6 23 124-146 8-30 (178)
414 3crm_A TRNA delta(2)-isopenten 96.8 0.00073 2.5E-08 59.2 3.5 25 123-147 6-30 (323)
415 1z0f_A RAB14, member RAS oncog 96.8 0.0008 2.7E-08 52.2 3.4 23 124-146 17-39 (179)
416 1nrj_B SR-beta, signal recogni 96.8 0.00077 2.6E-08 54.6 3.4 23 124-146 14-36 (218)
417 2gno_A DNA polymerase III, gam 96.8 0.008 2.7E-07 52.0 10.1 34 112-145 6-41 (305)
418 2a9k_A RAS-related protein RAL 96.8 0.00081 2.8E-08 52.6 3.4 23 124-146 20-42 (187)
419 3bgw_A DNAB-like replicative h 96.8 0.0029 9.8E-08 57.8 7.5 39 118-157 193-231 (444)
420 3exa_A TRNA delta(2)-isopenten 96.8 0.00087 3E-08 58.5 3.9 26 122-147 3-28 (322)
421 2cxx_A Probable GTP-binding pr 96.8 0.00067 2.3E-08 53.4 2.9 23 124-146 3-25 (190)
422 2wsm_A Hydrogenase expression/ 96.8 0.00098 3.3E-08 54.1 4.0 25 123-147 31-55 (221)
423 3uk6_A RUVB-like 2; hexameric 96.8 0.00063 2.1E-08 59.8 3.0 28 121-148 69-96 (368)
424 3con_A GTPase NRAS; structural 96.8 0.00083 2.8E-08 53.0 3.4 23 124-146 23-45 (190)
425 2y8e_A RAB-protein 6, GH09086P 96.8 0.00076 2.6E-08 52.3 3.1 23 124-146 16-38 (179)
426 2r44_A Uncharacterized protein 96.7 0.0004 1.4E-08 60.4 1.6 32 117-148 41-72 (331)
427 3iby_A Ferrous iron transport 96.7 0.00073 2.5E-08 57.1 3.2 23 124-146 3-25 (256)
428 1r8s_A ADP-ribosylation factor 96.7 0.00089 3E-08 51.3 3.4 23 124-146 2-24 (164)
429 3hws_A ATP-dependent CLP prote 96.7 0.00074 2.5E-08 59.7 3.3 27 121-147 50-76 (363)
430 2efe_B Small GTP-binding prote 96.7 0.00089 3.1E-08 52.2 3.4 23 124-146 14-36 (181)
431 2g6b_A RAS-related protein RAB 96.7 0.0009 3.1E-08 52.1 3.4 24 124-147 12-35 (180)
432 1ltq_A Polynucleotide kinase; 96.7 0.00083 2.9E-08 57.5 3.5 23 123-145 3-25 (301)
433 2f6r_A COA synthase, bifunctio 96.7 0.00078 2.7E-08 57.7 3.1 22 123-144 76-97 (281)
434 1fzq_A ADP-ribosylation factor 96.7 0.00069 2.4E-08 53.5 2.6 22 124-145 18-39 (181)
435 3kkq_A RAS-related protein M-R 96.7 0.001 3.4E-08 52.1 3.4 23 124-146 20-42 (183)
436 1m2o_B GTP-binding protein SAR 96.7 0.00089 3E-08 53.3 3.1 22 124-145 25-46 (190)
437 2bme_A RAB4A, RAS-related prot 96.7 0.0009 3.1E-08 52.5 3.1 23 124-146 12-34 (186)
438 2bov_A RAla, RAS-related prote 96.7 0.00099 3.4E-08 53.1 3.4 23 124-146 16-38 (206)
439 1vg8_A RAS-related protein RAB 96.7 0.001 3.5E-08 53.2 3.5 23 124-146 10-32 (207)
440 3t1o_A Gliding protein MGLA; G 96.7 0.0012 4E-08 52.1 3.7 25 124-148 16-40 (198)
441 3tkl_A RAS-related protein RAB 96.7 0.0011 3.6E-08 52.5 3.4 23 124-146 18-40 (196)
442 2gf9_A RAS-related protein RAB 96.7 0.0011 3.7E-08 52.4 3.4 23 124-146 24-46 (189)
443 2xxa_A Signal recognition part 96.7 0.003 1E-07 57.5 6.8 39 122-160 100-138 (433)
444 2zts_A Putative uncharacterize 96.7 0.0019 6.5E-08 53.2 5.0 26 118-143 26-51 (251)
445 2xtp_A GTPase IMAP family memb 96.7 0.00095 3.2E-08 55.9 3.2 23 124-146 24-46 (260)
446 2fg5_A RAB-22B, RAS-related pr 96.6 0.001 3.5E-08 52.9 3.2 23 124-146 25-47 (192)
447 1a7j_A Phosphoribulokinase; tr 96.6 0.00056 1.9E-08 58.9 1.7 26 122-147 5-30 (290)
448 1ksh_A ARF-like protein 2; sma 96.6 0.001 3.5E-08 52.3 3.1 24 123-146 19-42 (186)
449 3a1s_A Iron(II) transport prot 96.6 0.0011 3.8E-08 56.0 3.5 23 124-146 7-29 (258)
450 1moz_A ARL1, ADP-ribosylation 96.6 0.00057 1.9E-08 53.5 1.6 23 122-144 18-40 (183)
451 3foz_A TRNA delta(2)-isopenten 96.6 0.0012 4E-08 57.5 3.7 25 123-147 11-35 (316)
452 2gf0_A GTP-binding protein DI- 96.6 0.0011 3.6E-08 52.6 3.2 22 124-145 10-31 (199)
453 1z06_A RAS-related protein RAB 96.6 0.0012 4.2E-08 52.1 3.5 23 124-146 22-44 (189)
454 1mh1_A RAC1; GTP-binding, GTPa 96.6 0.0012 4.1E-08 51.6 3.4 22 124-145 7-28 (186)
455 1zbd_A Rabphilin-3A; G protein 96.6 0.0012 4.2E-08 52.7 3.5 23 124-146 10-32 (203)
456 1m7b_A RND3/RHOE small GTP-bin 96.6 0.0011 3.8E-08 52.2 3.1 23 124-146 9-31 (184)
457 1wf3_A GTP-binding protein; GT 96.6 0.0011 3.9E-08 57.3 3.5 22 124-145 9-30 (301)
458 1f6b_A SAR1; gtpases, N-termin 96.6 0.0007 2.4E-08 54.4 1.9 32 112-144 16-47 (198)
459 3zvl_A Bifunctional polynucleo 96.6 0.0012 4.3E-08 59.6 3.8 26 121-146 257-282 (416)
460 3ihw_A Centg3; RAS, centaurin, 96.6 0.0013 4.4E-08 52.1 3.4 22 124-145 22-43 (184)
461 3i8s_A Ferrous iron transport 96.6 0.0011 3.8E-08 56.4 3.2 23 124-146 5-27 (274)
462 2a5j_A RAS-related protein RAB 96.6 0.0013 4.5E-08 52.1 3.4 23 124-146 23-45 (191)
463 3iev_A GTP-binding protein ERA 96.6 0.0012 4.2E-08 57.2 3.5 24 123-146 11-34 (308)
464 1g41_A Heat shock protein HSLU 96.6 0.0012 3.9E-08 60.4 3.4 26 123-148 51-76 (444)
465 3oes_A GTPase rhebl1; small GT 96.6 0.0012 4E-08 52.9 3.1 23 124-146 26-48 (201)
466 1g5t_A COB(I)alamin adenosyltr 96.6 0.0071 2.4E-07 49.0 7.8 35 122-157 28-62 (196)
467 1x3s_A RAS-related protein RAB 96.6 0.0013 4.5E-08 51.8 3.4 23 124-146 17-39 (195)
468 3t5d_A Septin-7; GTP-binding p 96.6 0.00094 3.2E-08 56.7 2.7 22 124-145 10-31 (274)
469 3t5g_A GTP-binding protein RHE 96.6 0.0012 4.2E-08 51.5 3.1 21 124-144 8-28 (181)
470 3lv8_A DTMP kinase, thymidylat 96.6 0.0015 5E-08 54.7 3.8 29 121-149 26-54 (236)
471 1zd9_A ADP-ribosylation factor 96.6 0.0014 4.6E-08 51.9 3.4 23 124-146 24-46 (188)
472 3dz8_A RAS-related protein RAB 96.6 0.0012 4.2E-08 52.3 3.1 23 124-146 25-47 (191)
473 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.4E-08 53.5 3.3 26 122-147 3-28 (219)
474 2p5s_A RAS and EF-hand domain 96.6 0.0014 4.7E-08 52.4 3.4 23 124-146 30-52 (199)
475 3bwd_D RAC-like GTP-binding pr 96.6 0.0014 4.8E-08 51.0 3.4 23 124-146 10-32 (182)
476 2atv_A RERG, RAS-like estrogen 96.5 0.0014 4.9E-08 52.1 3.5 23 124-146 30-52 (196)
477 2hf9_A Probable hydrogenase ni 96.5 0.0017 5.9E-08 52.8 4.0 26 123-148 39-64 (226)
478 3cph_A RAS-related protein SEC 96.5 0.0014 4.9E-08 52.5 3.4 23 124-146 22-44 (213)
479 1yrb_A ATP(GTP)binding protein 96.5 0.0019 6.4E-08 53.9 4.2 35 123-159 15-49 (262)
480 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0013 4.5E-08 52.7 3.1 23 124-146 10-32 (206)
481 1zj6_A ADP-ribosylation factor 96.5 0.0014 4.7E-08 51.7 3.2 22 124-145 18-39 (187)
482 1jwy_B Dynamin A GTPase domain 96.5 0.0013 4.4E-08 56.7 3.2 23 124-146 26-48 (315)
483 2il1_A RAB12; G-protein, GDP, 96.5 0.0012 4.2E-08 52.5 2.8 23 124-146 28-50 (192)
484 3reg_A RHO-like small GTPase; 96.5 0.0015 5.2E-08 51.8 3.4 23 124-146 25-47 (194)
485 2ocp_A DGK, deoxyguanosine kin 96.5 0.0014 4.8E-08 54.4 3.3 26 122-147 2-27 (241)
486 4tmk_A Protein (thymidylate ki 96.5 0.0018 6.1E-08 53.3 3.8 29 121-149 2-30 (213)
487 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0011 3.8E-08 61.5 2.8 34 115-148 34-67 (500)
488 2o52_A RAS-related protein RAB 96.5 0.0014 4.7E-08 52.6 3.1 23 124-146 27-49 (200)
489 2h17_A ADP-ribosylation factor 96.5 0.0012 4.2E-08 51.8 2.7 22 124-145 23-44 (181)
490 2qag_A Septin-2, protein NEDD5 96.5 0.001 3.4E-08 59.1 2.4 23 124-146 39-61 (361)
491 2cjw_A GTP-binding protein GEM 96.5 0.0015 5.1E-08 52.2 3.2 22 124-145 8-29 (192)
492 3cbq_A GTP-binding protein REM 96.5 0.0011 3.7E-08 53.2 2.3 22 124-145 25-46 (195)
493 2f7s_A C25KG, RAS-related prot 96.5 0.0016 5.6E-08 52.6 3.4 23 124-146 27-49 (217)
494 2qen_A Walker-type ATPase; unk 96.5 0.0014 4.8E-08 56.7 3.2 35 112-146 21-55 (350)
495 2qu8_A Putative nucleolar GTP- 96.5 0.0015 5.1E-08 53.6 3.1 22 124-145 31-52 (228)
496 2ew1_A RAS-related protein RAB 96.5 0.0015 5.2E-08 52.7 3.1 23 124-146 28-50 (201)
497 2h57_A ADP-ribosylation factor 96.5 0.0011 3.6E-08 52.5 2.2 23 124-146 23-45 (190)
498 3c5c_A RAS-like protein 12; GD 96.5 0.0018 6.1E-08 51.3 3.5 23 124-146 23-45 (187)
499 2dby_A GTP-binding protein; GD 96.4 0.0015 5E-08 58.3 3.2 23 124-146 3-25 (368)
500 2b6h_A ADP-ribosylation factor 96.4 0.0019 6.3E-08 51.5 3.5 21 124-144 31-51 (192)
No 1
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.96 E-value=4.5e-29 Score=223.76 Aligned_cols=212 Identities=16% Similarity=0.209 Sum_probs=159.0
Q ss_pred CCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhccc----------CCCceeEEcC-ceeEEeEEecC
Q 025371 25 RGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEF----------GGDNRAGIEG-TLHRISAIRSR 93 (254)
Q Consensus 25 ~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~----------~~~~~~~~~~-~~~Rv~~~~~~ 93 (254)
+.+++||++++|.|+++|++|.+ ......+++.+++..++..+... ..|.++.+++ .++|++++...
T Consensus 12 ~~~aSDIhi~~~~~~~~ri~G~l--~~~~~~~~~~~~l~~~i~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~ 89 (356)
T 3jvv_A 12 KQGASDLHLSAGLPPMIRVDGDV--RRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQN 89 (356)
T ss_dssp HTTCSEEEEETTBCCEEEETTEE--EECSSCCBCHHHHHHHHHHHCCHHHHHHHHHHSCEEEEEEETTTEEEEEEEEEET
T ss_pred HCCCceEEEECCCCEEEEECCEE--EEecCCCCCHHHHHHHHHHHhcHhhhhhhhhcCCeeEEEEcCCCcEEEEEEEeeC
Confidence 37899999999999999999887 35556788999999988655321 2344555554 35899999987
Q ss_pred CCcEEEEEEEECceeecchhhhhc-------cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC
Q 025371 94 KGAIVGLTCRVGRAVSGHIDMVYD-------LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD 166 (254)
Q Consensus 94 ~g~~~~l~ir~~~~~~~~~~~l~~-------~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~ 166 (254)
.|. ++++|+.......++.+.. ...+|++++|+||||||||||+++|+|+++++.++++++++++.++...
T Consensus 90 ~g~--~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~ 167 (356)
T 3jvv_A 90 RGA--GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE 167 (356)
T ss_dssp TEE--EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC
T ss_pred CCc--EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh
Confidence 775 9999986654333444332 4677889999999999999999999999988767889999988776432
Q ss_pred CCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 167 GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 167 ~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
... .. ..+............+++++|+++||+|++|||++......+.+++++|+++++|+|+.+..+.++|-+
T Consensus 168 ~~~---~~--v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 168 SKK---CL--VNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp CSS---SE--EEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred ccc---cc--eeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 110 00 011112222234556999999999999999999987776777888899999999999999887775543
No 2
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=9.9e-27 Score=206.75 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=154.3
Q ss_pred HHHHHhcCCCCCCeEEEEEecCCCcEEEEecc-CCceecccc---CCCHHHHHHHHHHhcccC----CC-ceeEEcCc--
Q 025371 15 LRDRLQNDSKRGQLLEVILDLGRLPEARYLGE-FGGKYLRST---EVSVEELEYAQSAVGEFG----GD-NRAGIEGT-- 83 (254)
Q Consensus 15 l~~~l~~~~~~~~v~ei~i~~g~~~~~~~~~~-~~~~~~~~~---~~~~~~l~~~~~~l~~~~----~~-~~~~~~~~-- 83 (254)
...+|.+++.+++++||++|.+.++++++.|. + ...... .+|..++..++..++... .. ..+.+...
T Consensus 32 ~~~~l~~~l~d~~v~dI~in~~~~v~v~~~g~~~--~~~~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 2pt7_A 32 TEELFGDFLKMENITEICYNGNKVVWVLKNNGEW--QPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLA 109 (330)
T ss_dssp HHHHHHHHHTSSSEEEEEECSSSEEEEEETTSCE--EEEECTTCGGGSHHHHHHHHHHHHHHTTCCCCSSSCCEEEEECT
T ss_pred CccchHHHhcCCCCeEEEEcCCCEEEEEECCceE--EEecCCcccCCCHHHHHHHHHHHHHHhCCCCCCCCCeeEEEEcC
Confidence 34667888889999999999888898888776 3 233333 689999998887664322 22 33444322
Q ss_pred -eeEEeEEe-cC---CCcEEEEEEEECce-eec------------------chhhhhccccCCcEEEEECCCCCCHHHHH
Q 025371 84 -LHRISAIR-SR---KGAIVGLTCRVGRA-VSG------------------HIDMVYDLLHYGKSILFVGRPGVGKTTVM 139 (254)
Q Consensus 84 -~~Rv~~~~-~~---~g~~~~l~ir~~~~-~~~------------------~~~~l~~~i~~g~~~~i~G~~GsGKTTLl 139 (254)
..|++.+. +| .+ ...+++|.... ... .++.+++.+++|++++|+||||||||||+
T Consensus 110 ~~~Ri~~~l~~p~~~~~-~~~~~ir~~~~~~i~l~~l~~~g~~~~v~fy~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 110 NGERVQIVLSPVTVNDE-TISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp TSCEEEEECTTTSSSTT-CCEEEEECCCCCCCCHHHHHHTTTTTTSTTHHHHHHHHHHHHHHTCCEEEEESTTSCHHHHH
T ss_pred CCcEEEEEEcCCccCCC-CceEEEeCCCCCCCCHHHHHhCCCcCchhhHHHHHhhhhhhccCCCEEEEECCCCCCHHHHH
Confidence 27999988 33 23 12677776532 222 35667788999999999999999999999
Q ss_pred HHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCC-ChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHH
Q 025371 140 REIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP-EPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC 218 (254)
Q Consensus 140 ~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~-s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~ 218 (254)
++|+|+++++ ...+++++..++... .+.+. ..+. .+|++|+.++++||+++|++|++|||++.. ...+
T Consensus 189 ~~l~g~~~~~--~g~i~i~~~~e~~~~---~~~~~-----i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~e-~~~~ 257 (330)
T 2pt7_A 189 KSIMEFIPKE--ERIISIEDTEEIVFK---HHKNY-----TQLFFGGNITSADCLKSCLRMRPDRIILGELRSSE-AYDF 257 (330)
T ss_dssp HHGGGGSCTT--SCEEEEESSCCCCCS---SCSSE-----EEEECBTTBCHHHHHHHHTTSCCSEEEECCCCSTH-HHHH
T ss_pred HHHhCCCcCC--CcEEEECCeeccccc---cchhE-----EEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChHH-HHHH
Confidence 9999999885 445677766554321 01111 0011 178999999999999999999999999964 3444
Q ss_pred HHHHhCCc-eEEEEEchhhHHHHhCChhh
Q 025371 219 RSIAERGV-MLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 219 ~~~~~~G~-~vi~t~H~~~~~~~~~~~~~ 246 (254)
.+..++|+ ++++|+|+.++.+.+++...
T Consensus 258 l~~~~~g~~tvi~t~H~~~~~~~~dri~~ 286 (330)
T 2pt7_A 258 YNVLCSGHKGTLTTLHAGSSEEAFIRLAN 286 (330)
T ss_dssp HHHHHTTCCCEEEEEECSSHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEcccHHHHHhhhhee
Confidence 44556777 79999999997777765443
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.94 E-value=6e-27 Score=203.06 Aligned_cols=148 Identities=18% Similarity=0.266 Sum_probs=106.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.+++++|+... ..++++++.+++|++++|+||||||||||+|+|+|+++|+.| .|.
T Consensus 10 i~~ls~~y~~~~-~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 10 VEELNYNYSDGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG-RILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEECTTSC-EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEECCCC-eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-EEEECCEECCcccccHHHHhCcEE
Confidence 568899886432 258899999999999999999999999999999999998632 232
Q ss_pred EEcCCCccc-cCC-------------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 156 IVDTSNEIG-GDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 156 ~~~~~~ei~-~~~-------------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++.|..... +.. ..+... . + ..+....+|+||+||+++|+||.++|++||+
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222221100 000 000000 0 0 0123345699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|+.. +.++. +.|.|+|+++|+.+....++++++
T Consensus 168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~ 215 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVF 215 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEE
T ss_pred ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999876 44454 459999999999887777666654
No 4
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.93 E-value=1.3e-25 Score=209.97 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=160.7
Q ss_pred HHhcCCCCCCeEEEEEecCC-CcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCce---eEEeE
Q 025371 18 RLQNDSKRGQLLEVILDLGR-LPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGTL---HRISA 89 (254)
Q Consensus 18 ~l~~~~~~~~v~ei~i~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~---~Rv~~ 89 (254)
+|++++++++|+||++|... |++++ ++..+ .......++.+++.+++++++... +..+|.+++++ +|+++
T Consensus 134 ~l~~ll~d~~v~dI~in~~~~~v~v~-~~~~g-~~~~~~~~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~lp~g~Rv~~ 211 (511)
T 2oap_1 134 LIDPLMEDTNVEDISCDGYNIPIFIY-HQKYG-NVETNIVLDQEKLDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQA 211 (511)
T ss_dssp GGHHHHHCTTEEEEEECSTTCCCEEE-ETTTE-EEEESCCCCHHHHHHHHHHHHHHTTCCCBTTBCEEEEEETTTEEEEE
T ss_pred chHHHhcCCCceEEEEECCCCEEEEE-EccCc-EEecCccCCHHHHHHHHHHHHHHcCCCccccCcceeeecCCCeEEEE
Confidence 46667778999999999755 88884 44444 333455679999999999886543 34467777665 89999
Q ss_pred Ee-cC---CCcEEEEEEEECceee---------c-----chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC
Q 025371 90 IR-SR---KGAIVGLTCRVGRAVS---------G-----HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (254)
Q Consensus 90 ~~-~~---~g~~~~l~ir~~~~~~---------~-----~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~ 151 (254)
.. ++ .|. ++++|..+... + .++.++..+++|++++|+||||||||||+++|++++++ .
T Consensus 212 ~~~~~~~~~G~--~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~ 287 (511)
T 2oap_1 212 TFGTEVTPRGS--SFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--D 287 (511)
T ss_dssp ECSSSSCTTCS--EEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--T
T ss_pred EECCCccCCCC--EEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--C
Confidence 86 33 465 89999866432 1 23556677899999999999999999999999999987 4
Q ss_pred CeEEEEcCCCccccCCCCCccccc-cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEE
Q 025371 152 KRVVIVDTSNEIGGDGDIPHSAIG-TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIG 230 (254)
Q Consensus 152 ~~i~~~~~~~ei~~~~~~~~~~~~-~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~ 230 (254)
.+++++++..|+.. ++.+.. ...+.....++......+..+|+++||+++++|.+.. +...+.++.++||.++.
T Consensus 288 ~giitied~~E~~~----~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~-E~~~~l~a~~tGh~~~s 362 (511)
T 2oap_1 288 AKVVSIEDTREIKL----YHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGR-EAQTLFQAMSTGHASYS 362 (511)
T ss_dssp CCEEEEESSCCCCC----CCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCST-HHHHHHHHHHTTCEEEE
T ss_pred CCEEEEcCcccccC----CCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHH-HHHHHHHhhcCCCCccc
Confidence 67888888877643 222111 0111112333445667888999999999999999997 46667778889999999
Q ss_pred EEchhhHHHHhCChhh
Q 025371 231 TAHGEWLENIIKNPIL 246 (254)
Q Consensus 231 t~H~~~~~~~~~~~~~ 246 (254)
|.|++++.+++.|...
T Consensus 363 T~Ha~~~~~~l~Rl~~ 378 (511)
T 2oap_1 363 TLHAGDINQMVYRLES 378 (511)
T ss_dssp EEECSSHHHHHHHHHS
T ss_pred ccccCCHHHHHHHHHh
Confidence 9999998888766543
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.93 E-value=4.7e-26 Score=205.08 Aligned_cols=142 Identities=23% Similarity=0.271 Sum_probs=107.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-----------------EcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-----------------VDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-----------------~~~ 159 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||||+|+|+++|+. +.|.+ +.|
T Consensus 6 ~~~l~~~yg~~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 6 LQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS-GDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEeEEEEECCEE--EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCC-eEEEECCEECCCCCHHHCCEEEEec
Confidence 568999997654 4889999999999999999999999999999999999863 23322 222
Q ss_pred CCccccCCCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 160 SNEIGGDGDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 160 ~~ei~~~~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
... .+|+..+. ..+....+|+||+||++||+||..+|++||+
T Consensus 83 ~~~-----l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 83 SYA-----LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp TCC-----CCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCc-----CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111 11221110 0123345699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~ 205 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV 205 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEE
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999875 444443 49999999999877777776654
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.93 E-value=4e-26 Score=192.37 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=104.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE----------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV---------------------- 154 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i---------------------- 154 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|+. +.|
T Consensus 7 ~~~l~~~y~~~~--~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 7 AENIKKVIRGYE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE-GKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEETTEE--EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE-EEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEeEEEEECCEe--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECCEECCCCCHHHHHHHHhCc
Confidence 568889887643 4889999999999999999999999999999999998863 222
Q ss_pred -EEEcCCCccccCC-------------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 155 -VIVDTSNEIGGDG-------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 155 -~~~~~~~ei~~~~-------------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.++.+...+.... ..+... . + ..+....+|+||+||+++|+|+..+|++||
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2222221110000 000000 0 0 012233469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|... +.++.+.|.++|+++|+.+.. .++++++
T Consensus 164 LDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~ 210 (224)
T 2pcj_A 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTL 210 (224)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEE
Confidence 999999999876 444545699999999997766 4555543
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.93 E-value=9.1e-26 Score=201.84 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=107.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC------------CCccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT------------SNEIG 164 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~------------~~ei~ 164 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||||+|+|+++|+. +.|.+.+. ...++
T Consensus 7 i~~ls~~y~~~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 7 IGHLSKSFQNTP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDS-GEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSE-EEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEeEEEEECCEE--EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCC-cEEEECCEECcccccccchhhCCEE
Confidence 568999997654 4889999999999999999999999999999999999873 23322110 00111
Q ss_pred cC----CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 165 GD----GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 165 ~~----~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
+. ..+|+..+. ..+....+|+||+||+++||||..+|++||+|
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11 011111100 01233456999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHH-HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 208 EIGTEAEAHA-------CRSI-AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~-~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
||++++|+.. +.++ .+.|.|+|++||+.+.+..++++++.
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v 211 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV 211 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE
Confidence 9999999875 2232 34699999999998877777776543
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.93 E-value=6.7e-26 Score=195.68 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=107.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------~ 157 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|+. +.|.+ +
T Consensus 14 ~~~l~~~~~~~~--vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQA--LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH-GECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEE--EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS-CEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCee--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECCcCCHHHHhheEEEE
Confidence 568888887654 4889999999999999999999999999999999999873 33332 2
Q ss_pred cCCCccccCC-----------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHcc------CCCEEE
Q 025371 158 DTSNEIGGDG-----------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENH------MPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~~-----------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~------~P~vii 205 (254)
.+...+.+.. ...... . + ..+....+|+||+||+++|+||.. +|++||
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 2221111100 000000 0 0 012334579999999999999999 999999
Q ss_pred EeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|||++++|+.. +.++.+. |.|+|+++|+.+....++++++.
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~v 220 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIML 220 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEE
Confidence 999999999876 4444444 57999999998888777776643
No 9
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.93 E-value=9e-26 Score=194.49 Aligned_cols=148 Identities=14% Similarity=0.211 Sum_probs=106.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|+. +.|.
T Consensus 27 i~~l~~~y~~~~--vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~-G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 27 VHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE-GEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEeEEEEECCEE--EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC-cEEEECCEECCCccccHHHHhCcEE
Confidence 568888887543 4889999999999999999999999999999999998863 2222
Q ss_pred EEcCCCccccCC--------------CCCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 156 IVDTSNEIGGDG--------------DIPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 156 ~~~~~~ei~~~~--------------~~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++.+...+.... ..+... . + ..+....+|+||+||+++|+||..+|++||+
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 222221110000 000000 0 0 0122334699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|||++++|+.. +.++.+.|.++|+++|+.+....++++++.
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 231 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLF 231 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE
Confidence 99999999876 444555699999999998877777666543
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=9.4e-26 Score=193.71 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=107.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----------------eEEEEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----------------~i~~~~~ 159 (254)
+.+++++|+... .++.+++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+
T Consensus 18 i~~l~~~y~~~~--vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 18 VKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEEEEECCEE--EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 568888887543 488999999999999999999999999999999999886321 1223332
Q ss_pred CCccccCC-------------CCCcc----cc-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGDG-------------DIPHS----AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~~-------------~~~~~----~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+.... ..+.. .. + ..+....+|+||+||+++|+||..+|++||+|||++
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 22111000 00000 00 0 012334579999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+.. +.++.+.|.|+|+++|+.+....++++++
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~ 217 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIA 217 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEE
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEE
Confidence 999876 44445569999999999887777666654
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.93 E-value=7.4e-26 Score=202.64 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=107.4
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-------------C
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-------------N 161 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-------------~ 161 (254)
+.+++++|+.. ....++++++.+++|++++|+||||||||||+|+|+|+++|+.| .|.+.+.. .
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G-~I~i~G~~i~~~~~~~~~~~r~ 105 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKARR 105 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECSSCCHHHHHHHHT
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhC
Confidence 56888888532 22358899999999999999999999999999999999998632 33221100 0
Q ss_pred ccccCC----CCCcccc-----------------------------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 162 EIGGDG----DIPHSAI-----------------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 162 ei~~~~----~~~~~~~-----------------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+++.. .++...+ + ..+....+|+||+||+++|+||..+|++|
T Consensus 106 ~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lL 185 (366)
T 3tui_C 106 QIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVL 185 (366)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111110 0111000 0 01233457999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
|+|||++++|+.. +.++. +.|.|+|++||+.+....++++++.
T Consensus 186 LlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 186 LCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999999876 44444 3499999999998888877777643
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.93 E-value=1.1e-25 Score=193.85 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=106.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV--------------------- 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~--------------------- 155 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.
T Consensus 9 i~~l~~~y~~~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 9 VIDLHKRYGGHE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEEESCH
T ss_pred EeeEEEEECCEE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEccccccccccccccCh
Confidence 568888887643 48899999999999999999999999999999999998632 222
Q ss_pred -----------EEcCCCccccC----------C----CCCccc----c-------c-----cccccCCCChhHHHHHHHH
Q 025371 156 -----------IVDTSNEIGGD----------G----DIPHSA----I-------G-----TARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 156 -----------~~~~~~ei~~~----------~----~~~~~~----~-------~-----~~~~~~~~s~g~~~~~~l~ 194 (254)
++.+...+... . ..+... . + ..+....+|+||+||+++|
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 22221111000 0 000000 0 0 0122335799999999999
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+||..+|++||+|||++++|+.. +.++.+.|.|+|+++|+.+....++++++
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~ 224 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEE
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999876 44455569999999999887777766654
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.93 E-value=5.1e-26 Score=193.07 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=105.2
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC----------------------
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------------- 152 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------------- 152 (254)
+.+++++|+.. ....++++++.+++|++++|+||||||||||+++|+|+++|+.|.
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 83 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhc
Confidence 45788887532 123588999999999999999999999999999999999986321
Q ss_pred eEEEEcCCCccccCC----------------CCCccc-----------ccc-----ccccCCCChhHHHHHHHHHHHccC
Q 025371 153 RVVIVDTSNEIGGDG----------------DIPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 153 ~i~~~~~~~ei~~~~----------------~~~~~~-----------~~~-----~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
++.++.|...+.... ...... ++. .+....+|+||+||+++|+||..+
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 133343332211100 000000 000 122345799999999999999999
Q ss_pred CCEEEEeCCCchHHHHH-------HHHHHhC-CceEEEEEchhhHHHHhCChhh
Q 025371 201 PEVIIVDEIGTEAEAHA-------CRSIAER-GVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 201 P~viilDEp~~~ld~~~-------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++||+|||++++|+.. +.++.+. |.|+|+++|+.+.. .++++++
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~ 216 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERII 216 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEE
Confidence 99999999999999876 4444443 99999999998865 4556554
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.2e-25 Score=189.67 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=107.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|+.|. ++.++
T Consensus 9 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 9 VQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEETTEE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEeEEEEECCee--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 568888887643 488999999999999999999999999999999999886321 13344
Q ss_pred cCCCccccC---------CC---CCccc-------c-----cc----ccccCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 025371 158 DTSNEIGGD---------GD---IPHSA-------I-----GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 209 (254)
Q Consensus 158 ~~~~ei~~~---------~~---~~~~~-------~-----~~----~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp 209 (254)
.+...+... .. ..... + +. .+....+|+||+||+++|+||..+|++||+|||
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 332211100 00 00000 0 00 123345799999999999999999999999999
Q ss_pred CchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 210 GTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 210 ~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++++|+.. +.++.+.|.++|+++|+.+....++++++
T Consensus 167 ts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~ 210 (240)
T 1ji0_A 167 SLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGY 210 (240)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 99999876 44444568999999999876666666554
No 15
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.92 E-value=2.7e-25 Score=190.54 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=110.0
Q ss_pred EEEEEEEEC-ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-----CeEEEEcCCCccccC----
Q 025371 97 IVGLTCRVG-RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD---- 166 (254)
Q Consensus 97 ~~~l~ir~~-~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-----~~i~~~~~~~ei~~~---- 166 (254)
+.+++++|+ ... .++++++.+++|++++|+||||||||||+++|+|+++|+.| .++.++.+...+...
T Consensus 7 i~~l~~~y~~~~~--vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 7 VENLGFYYQAENF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp EEEEEEEETTTTE--EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHH
T ss_pred EeeEEEEeCCCCe--EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHH
Confidence 568888886 433 48889999999999999999999999999999999998743 235566554332211
Q ss_pred -----CCCC--------ccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-
Q 025371 167 -----GDIP--------HSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (254)
Q Consensus 167 -----~~~~--------~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~- 217 (254)
...+ ... . + ..+....+|+||+||+++|+||..+|++||+|||++++|+..
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~ 164 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHH
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 0000 000 0 0 012334579999999999999999999999999999999876
Q ss_pred ------HHHHHhC-CceEEEEEchhhHHHHhCChhhh
Q 025371 218 ------CRSIAER-GVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 ------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+. |.|+|+++|+.+....++++++.
T Consensus 165 ~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~ 201 (253)
T 2nq2_C 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLL 201 (253)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 3344445 89999999998877666666543
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.92 E-value=3e-25 Score=198.79 Aligned_cols=142 Identities=19% Similarity=0.267 Sum_probs=105.9
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-----------------EEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-----------------IVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-----------------~~~~ 159 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||||+|+|+++|+. +.|. ++.|
T Consensus 6 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 6 VVNLKKYFGKVK--AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS-GEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEECCEE--EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCc-cEEEECCEECCCCChhhCcEEEEec
Confidence 568888887643 4788999999999999999999999999999999999863 2222 2222
Q ss_pred CCccccCCCCCcccc------c---------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 160 SNEIGGDGDIPHSAI------G---------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 160 ~~ei~~~~~~~~~~~------~---------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
...+ +++..+ + ..+....+|+||+||+++|+||..+|++|++
T Consensus 83 ~~~l-----~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 83 NYAL-----YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp SCCC-----CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred Cccc-----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2111 111100 0 0122335699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~ 205 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIA 205 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE
Confidence 99999999876 334433 48999999999877766666654
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.92 E-value=2.4e-25 Score=199.57 Aligned_cols=147 Identities=17% Similarity=0.236 Sum_probs=105.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCccccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~~-- 166 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||||+|+|+++|+. +.|.+.+. ...+++.
T Consensus 6 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 6 LENIVKKFGNFT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS-GKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEESSSSE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEeEEEEECCEE--EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCc-eEEEECCEECCcCCHhHCcEEEEec
Confidence 568888886543 4788999999999999999999999999999999999863 23322110 0011110
Q ss_pred --CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 167 --GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 167 --~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
..+++..+. ..+....+|+||+||+++|+||..+|++||||||++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 011211100 012233469999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~ 205 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIA 205 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 999876 344433 49999999999877776666654
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.92 E-value=1.7e-25 Score=199.94 Aligned_cols=147 Identities=21% Similarity=0.227 Sum_probs=104.9
Q ss_pred EEEEEEEE-CceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCccccC-
Q 025371 97 IVGLTCRV-GRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGGD- 166 (254)
Q Consensus 97 ~~~l~ir~-~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~~- 166 (254)
+.+++++| +.. ..++++++.+++|++++|+||||||||||||+|+|+++|+. +.|.+.+. ...+++.
T Consensus 17 ~~~l~~~y~g~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 17 FVGVEKIYPGGA--RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK-GDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEEEEECCTTST--TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTCCGGGSSEEEEC
T ss_pred EEEEEEEEcCCC--EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEECCEECCcCChhhCcEEEEe
Confidence 55778777 442 24788999999999999999999999999999999999863 23322110 0011110
Q ss_pred ---CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCC
Q 025371 167 ---GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 210 (254)
Q Consensus 167 ---~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~ 210 (254)
..+++..+. ..+....+|+||+||+++|+||..+|++||||||+
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 011111000 01233357999999999999999999999999999
Q ss_pred chHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 211 TEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 211 ~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 174 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~ 217 (355)
T 1z47_A 174 AAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVL 217 (355)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE
Confidence 9999876 334433 49999999999877777766654
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=2.2e-25 Score=191.59 Aligned_cols=148 Identities=16% Similarity=0.148 Sum_probs=106.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------------eEEEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------------~i~~~ 157 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|+.|. .+.++
T Consensus 10 i~~l~~~y~~~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 10 TENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp EEEEEEEETTEE--EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred EeeeEEEECCEe--eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 568888887643 488999999999999999999999999999999999886321 12222
Q ss_pred cCCCccccC---------CCCC---c-----------cc-------c-------c----cccccCCCChhHHHHHHHHHH
Q 025371 158 DTSNEIGGD---------GDIP---H-----------SA-------I-------G----TARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 158 ~~~~ei~~~---------~~~~---~-----------~~-------~-------~----~~~~~~~~s~g~~~~~~l~~a 196 (254)
.+...+... .... . .. . + ..+....+|+||+||+++|+|
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 222111100 0000 0 00 0 0 012233469999999999999
Q ss_pred HccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 197 ENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 197 l~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+..+|++||+|||++++|+.. +.++.+.|.++|+++|+.+....++++++
T Consensus 168 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 168 LMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999876 44455569999999999777666666654
No 20
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.92 E-value=3.9e-25 Score=198.96 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=105.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE-----------------EEEcC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-----------------VIVDT 159 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i-----------------~~~~~ 159 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||||+|+|+++|+.| .| .++.|
T Consensus 14 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 14 LENLTKRFGNFT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEECCEE--EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCce-EEEECCEECCCCChhhCcEEEEec
Confidence 568888887643 47889999999999999999999999999999999998632 22 22222
Q ss_pred CCccccC----------CC---CCccc----c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc
Q 025371 160 SNEIGGD----------GD---IPHSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 160 ~~ei~~~----------~~---~~~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~ 211 (254)
...+... .. .+... + + ..+....+|+||+||+++|+||..+|++||||||++
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 2111000 00 00000 0 0 013344579999999999999999999999999999
Q ss_pred hHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 212 EAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 212 ~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~ 213 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIA 213 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999876 334433 38999999999877776666654
No 21
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.92 E-value=7e-25 Score=197.78 Aligned_cols=211 Identities=19% Similarity=0.202 Sum_probs=147.6
Q ss_pred CCCeEEEEEecCCCcEEEEeccCCceec-cccCCCHHHHHHHHHHhcccCC----------CceeEEcC-ceeEEeEEec
Q 025371 25 RGQLLEVILDLGRLPEARYLGEFGGKYL-RSTEVSVEELEYAQSAVGEFGG----------DNRAGIEG-TLHRISAIRS 92 (254)
Q Consensus 25 ~~~v~ei~i~~g~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~----------~~~~~~~~-~~~Rv~~~~~ 92 (254)
+.+++||++++|.++++|++|.+ ... ...+++.+++..++..+..... +..+.+++ ..+|++++..
T Consensus 24 ~~~asDIhi~~~~~v~~r~~G~l--~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~ 101 (372)
T 2ewv_A 24 ELGASDIHLTAGAPPAVRIDGYI--KFLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQ 101 (372)
T ss_dssp HHTCSEEEECSSSSCEEEETTEE--EECTTSCCSCCSTTHHHHHTTCCSTTTTHHHHSSEEEEEEECSSSCEEEEEEECC
T ss_pred HCCCeEEEEEcCCeEEEEECCEE--EEeccCCCCCHHHHHHHHHHHhChhhhhhhhhccceEEEEEcCCCcEEEEEEEec
Confidence 47899999999999999998875 344 4467888999999887754321 11122333 3589999887
Q ss_pred CCCcEEEEEEEECceeecchh------hhhc-cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc
Q 025371 93 RKGAIVGLTCRVGRAVSGHID------MVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG 165 (254)
Q Consensus 93 ~~g~~~~l~ir~~~~~~~~~~------~l~~-~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~ 165 (254)
..|. .+++|........++ .+.. .+.+|++++|+||||||||||+++|+++++++..++|.+++++.++..
T Consensus 102 ~~g~--~~viR~l~~~~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~ 179 (372)
T 2ewv_A 102 RGSV--AAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF 179 (372)
T ss_dssp SSSC--BEEECCBCSSCCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC
T ss_pred CCCc--EEEEEeCCcccCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh
Confidence 7776 788887554322211 1222 267899999999999999999999999998754567888887655421
Q ss_pred CCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 166 DGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
. .. .....+..+.......+.+++++++++|++|++|||++..+...+.+.+++|+++++|+|++++.+.+++.
T Consensus 180 ~----~~-~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 180 K----HK-KSIVNQREVGEDTKSFADALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp C----CS-SSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHH
T ss_pred c----cC-ceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHH
Confidence 1 10 00001100000111236789999999999999999998766666666678899999999999988777654
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.92 E-value=5.7e-25 Score=198.03 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=106.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc-----------CC---Cc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD-----------TS---NE 162 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~-----------~~---~e 162 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||||+|+|+++|+.| .|.+.+ .+ ..
T Consensus 6 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 6 LVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEETTEE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEE--EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc-EEEECCEECccccccccCCHhHCC
Confidence 568888887643 48889999999999999999999999999999999998632 332210 00 11
Q ss_pred cccC----CCCCccccc---------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 163 IGGD----GDIPHSAIG---------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 163 i~~~----~~~~~~~~~---------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
+++. ..+++..+. ..+....+|+||+||+++|+||..+|++||
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111 011221100 012233579999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||||++++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~ 211 (372)
T 1g29_1 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211 (372)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE
T ss_pred ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEE
Confidence 999999999876 344433 48999999999877777766654
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.92 E-value=9.8e-25 Score=185.68 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=103.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--------CCccccCCC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--------SNEIGGDGD 168 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--------~~ei~~~~~ 168 (254)
+.+++++|+. .++++++.+++ ++++|+||||||||||+++|+|+++|+. +.|.+.+. ...+++..+
T Consensus 4 ~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 4 KVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR-GEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE-EEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEECCcCchhhCcEEEEcC
Confidence 4688888864 27889999999 9999999999999999999999999863 33332110 011221100
Q ss_pred ----CCcccc-----------c--------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchH
Q 025371 169 ----IPHSAI-----------G--------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEA 213 (254)
Q Consensus 169 ----~~~~~~-----------~--------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~l 213 (254)
.+...+ + ..+....+|+||+||+++|+|+..+|++||+|||++++
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 000000 0 00223346999999999999999999999999999999
Q ss_pred HHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 214 EAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 214 d~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+.. +.++.+ .|.++|+++|+.+....++++++
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~ 198 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVA 198 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9876 334433 48999999999877666666554
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=5.6e-25 Score=196.38 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=105.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--------CccccC--
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--------NEIGGD-- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~--------~ei~~~-- 166 (254)
+.+++++|+.. .++++++.+++|++++|+||||||||||||+|+|+++|+. +.|.+.+.. ..+++.
T Consensus 4 ~~~l~~~y~~~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 4 IESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECSSC---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSE-EEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEECCE---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCC-cEEEECCEECCCCchhhCcEEEEec
Confidence 46888888653 5889999999999999999999999999999999999863 333221100 001110
Q ss_pred --CCCCccccc------------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 167 --GDIPHSAIG------------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 167 --~~~~~~~~~------------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
..+++..+. ..+....+|+||+||+++|+||..+|++|+||||++++|
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 011111000 012233469999999999999999999999999999999
Q ss_pred HHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 215 AHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 215 ~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.. +.++.+ .|.|+|++||+.+....++++++
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~ 199 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIA 199 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 876 444433 48999999999777766666654
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=1.3e-25 Score=187.84 Aligned_cols=148 Identities=13% Similarity=0.183 Sum_probs=107.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-------------eEEEEcCCCcc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-------------~i~~~~~~~ei 163 (254)
+.+++++|+. . .++++++.+++|++++|+||||||||||+++|+|+++|+.|. .+.++.+...+
T Consensus 13 ~~~ls~~y~~-~--il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 13 IRDLSVGYDK-P--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEEEESSS-E--EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEEEEEeCC-e--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcC
Confidence 4678888865 3 588999999999999999999999999999999999886321 13344333221
Q ss_pred ccC-----------C--CCCcc--cc-------cc---ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-
Q 025371 164 GGD-----------G--DIPHS--AI-------GT---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA- 217 (254)
Q Consensus 164 ~~~-----------~--~~~~~--~~-------~~---~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~- 217 (254)
... . ..... .. +. .+....+|+||+||+++++|+..+|++||+|||++++|+..
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 110 0 00000 00 00 12233579999999999999999999999999999999754
Q ss_pred ------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 218 ------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 ------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+.|.++|+++|+.+....+++.++.
T Consensus 170 ~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~ 205 (214)
T 1sgw_A 170 HKVLKSILEILKEKGIVIISSREELSYCDVNENLHK 205 (214)
T ss_dssp HHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 444445589999999998777777666654
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.91 E-value=3.8e-25 Score=197.97 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=105.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc----------CC---Ccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD----------TS---NEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~----------~~---~ei 163 (254)
+.+++++|+......++++++.+++|++++|+||||||||||||+|+|+++|+.| .|.+.+ .+ ..+
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTEESSCGGGSCE
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECcccccccCChhhCCE
Confidence 4688888865320147889999999999999999999999999999999998632 222110 00 011
Q ss_pred ccC----CCCCcccc------c---------------------------cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 164 GGD----GDIPHSAI------G---------------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 164 ~~~----~~~~~~~~------~---------------------------~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
++. ..+++..+ + ..+....+|+||+||+++|+||..+|++|||
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 110 01111100 0 0122335699999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|+.. +.++.+ .|.|+|++||+.+.+..++++++
T Consensus 165 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~ 212 (353)
T 1oxx_K 165 DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVG 212 (353)
T ss_dssp ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999764 444433 49999999999877777666654
No 27
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.91 E-value=4.5e-25 Score=191.73 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=104.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--------------------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------- 156 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------- 156 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|+++|+. +.|.+
T Consensus 24 ~~~l~~~y~~~~--vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS-GTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEE--EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE-EEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEE--EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-eEEEECCEEcccccCCHHHHcCcEE
Confidence 568888887643 4889999999999999999999999999999999998863 22222
Q ss_pred -EcCCCccccC-----------CCCC--------ccc----c-------c----cccccCCCChhHHHHHHHHHHHccCC
Q 025371 157 -VDTSNEIGGD-----------GDIP--------HSA----I-------G----TARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 157 -~~~~~ei~~~-----------~~~~--------~~~----~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
+.+...+.+. ...+ ... . + ..+....+|+||+||+++|+||..+|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 2211100000 0000 000 0 0 01223357999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceE--EEEEchhhHHHHhCChhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVML--IGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~v--i~t~H~~~~~~~~~~~~~ 246 (254)
++||+|||++++|... +.++.+.|.++ |+++|+.+....++++++
T Consensus 181 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999876 34444458899 999999776666666554
No 28
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=184.64 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=105.8
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCcccc------
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGG------ 165 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~------ 165 (254)
+.+++++|+......++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+...+..
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~en 85 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLREN 85 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHH
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHH
Confidence 56888888632123588899999999999999999999999999999999886332 2445555432211
Q ss_pred ---CCCCCcccc-------------c---------cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH---
Q 025371 166 ---DGDIPHSAI-------------G---------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--- 217 (254)
Q Consensus 166 ---~~~~~~~~~-------------~---------~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--- 217 (254)
......... . ..+....+|+||+||+++|+|+..+|++||+|||++++|+..
T Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 165 (237)
T 2cbz_A 86 ILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165 (237)
T ss_dssp HHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred hhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 000000000 0 012334689999999999999999999999999999999876
Q ss_pred HHHHH------hCCceEEEEEchhhHHHHhCChhh
Q 025371 218 CRSIA------ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 218 ~~~~~------~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+.+.. ..|.|+|+++|+.+.... +++++
T Consensus 166 i~~~l~~~~~~~~~~tviivtH~~~~~~~-~d~v~ 199 (237)
T 2cbz_A 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVII 199 (237)
T ss_dssp HHHHTTSTTSTTTTSEEEEECSCSTTGGG-SSEEE
T ss_pred HHHHHHHHHhhcCCCEEEEEecChHHHHh-CCEEE
Confidence 33322 248899999999776653 55543
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=4.5e-24 Score=184.26 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=106.8
Q ss_pred EEEEEEEEC-cee--ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC---------------eEEEEc
Q 025371 97 IVGLTCRVG-RAV--SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK---------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~-~~~--~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------~i~~~~ 158 (254)
+.+++++|+ ... ...++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~ 84 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAF 84 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEEC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEe
Confidence 568889886 110 12488899999999999999999999999999999999886321 134444
Q ss_pred CCC--ccccC---------C-C-CCccc-----------ccc------ccccCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 159 TSN--EIGGD---------G-D-IPHSA-----------IGT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 159 ~~~--ei~~~---------~-~-~~~~~-----------~~~------~~~~~~~s~g~~~~~~l~~al~~~P~viilDE 208 (254)
+.. .+... . . .+... ++. .+....+|+||+||+++|+||..+|++||+||
T Consensus 85 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 85 QYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp SSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 432 11100 0 0 01100 000 12233579999999999999999999999999
Q ss_pred CCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 209 IGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 209 p~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|++++|... +.++.+.|.|+|+++|+.+....++++++
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~ 209 (266)
T 2yz2_A 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV 209 (266)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999876 44444569999999999777766666554
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.90 E-value=2.9e-24 Score=183.55 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=103.0
Q ss_pred EEEEEEEEC--ceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEE
Q 025371 97 IVGLTCRVG--RAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVI 156 (254)
Q Consensus 97 ~~~l~ir~~--~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~ 156 (254)
+.+++++|. ... .++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.+
T Consensus 10 ~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 10 FRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEeCCCCcc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 568888882 322 488899999999999999999999999999999999886321 1233
Q ss_pred EcCCCccccC-----CCC--Cccc---c-------cc---c------------cccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 157 VDTSNEIGGD-----GDI--PHSA---I-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 157 ~~~~~ei~~~-----~~~--~~~~---~-------~~---~------------~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
+.+...+... ..+ +... . +. . +....+|+||+||+++|+||..+|++|
T Consensus 88 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp ECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 3332211100 000 0000 0 00 0 112468999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|+.. +.++ ..|.|+|+++|+.+.... +++++
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~~~~~~~-~d~v~ 214 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKN-ADRII 214 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTT-SSEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCCHHHHHh-CCEEE
Confidence 9999999999876 3344 358999999999776654 45443
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=2.9e-24 Score=183.85 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=99.6
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhc--cCcCCCCeEEEEcCC-----------Ccc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV--LSDEFQKRVVIVDTS-----------NEI 163 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~--~~~~~~~~i~~~~~~-----------~ei 163 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+++|+|+ ++|+. +.|.+.... ..+
T Consensus 6 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~-G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 6 IRDLWASIDGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER-GEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEETTEE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEE-EEEEETTEECTTSCHHHHHHTTB
T ss_pred EEeEEEEECCEE--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEECCCCCHHHHHhCcE
Confidence 568899887643 48899999999999999999999999999999998 56642 233221100 001
Q ss_pred ccCCC----CCcc-------------------------cc-------c-----cccccCC-CChhHHHHHHHHHHHccCC
Q 025371 164 GGDGD----IPHS-------------------------AI-------G-----TARRMQV-PEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 164 ~~~~~----~~~~-------------------------~~-------~-----~~~~~~~-~s~g~~~~~~l~~al~~~P 201 (254)
.+..+ .+.. .. + ..+.... +|+||+||+++|+||..+|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 11000 0000 00 0 0122344 8999999999999999999
Q ss_pred CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHh-CChhh
Q 025371 202 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENII-KNPIL 246 (254)
Q Consensus 202 ~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~-~~~~~ 246 (254)
++||+|||++++|+.. +.++.+.|.++|+++|+.+....+ +++++
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~ 215 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH 215 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE
Confidence 9999999999999876 333434589999999998776665 35543
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.90 E-value=5.1e-24 Score=180.03 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=105.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccC-----
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD----- 166 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~----- 166 (254)
+.+++++|.......++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++.+...+...
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~en 88 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKEN 88 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHH
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHH
Confidence 45788877421123588899999999999999999999999999999999986432 34455554332110
Q ss_pred ---C-CCCccc-------ccc---c------------cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHH
Q 025371 167 ---G-DIPHSA-------IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS 220 (254)
Q Consensus 167 ---~-~~~~~~-------~~~---~------------~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~ 220 (254)
. ...... ... . +....+|+||+||+++|+|+..+|++||+|||++++|+.....
T Consensus 89 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 89 IIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp HHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHH
T ss_pred hhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHH
Confidence 0 000000 000 0 0124689999999999999999999999999999999987332
Q ss_pred HH-------hCCceEEEEEchhhHHHHhCChhh
Q 025371 221 IA-------ERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 221 ~~-------~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+. ..|.|+|+++|+.+.... +++++
T Consensus 169 i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~ 200 (229)
T 2pze_A 169 IFESCVCKLMANKTRILVTSKMEHLKK-ADKIL 200 (229)
T ss_dssp HHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEE
T ss_pred HHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEE
Confidence 21 237899999999877665 55543
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=3.8e-24 Score=182.98 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=98.6
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe------------------EEEEcCCCccccC------
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR------------------VVIVDTSNEIGGD------ 166 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~------------------i~~~~~~~ei~~~------ 166 (254)
.++++++.+++|++++|+||||||||||+++|+|+++|+ |.- +.++.+...+...
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 578889999999999999999999999999999999886 421 2223222211100
Q ss_pred ---CCCCc--c-cc-------c----cccccCCCChhHHHHHHHHHHHccCCC-------EEEEeCCCchHHHHH-----
Q 025371 167 ---GDIPH--S-AI-------G----TARRMQVPEPSLQHKVMIEAVENHMPE-------VIIVDEIGTEAEAHA----- 217 (254)
Q Consensus 167 ---~~~~~--~-~~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~-------viilDEp~~~ld~~~----- 217 (254)
..... . .. + ..+....+|+||+||+++++|+..+|+ +||+|||++++|+..
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~ 173 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence 00000 0 00 0 012334579999999999999999999 999999999999876
Q ss_pred --HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 218 --CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 218 --~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.++.+.|.++|+++|+.+....++++++.
T Consensus 174 ~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~ 205 (249)
T 2qi9_C 174 KILSALSQQGLAIVMSSHDLNHTLRHAHRAWL 205 (249)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 444445689999999998887766666543
No 34
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.90 E-value=6.2e-24 Score=181.04 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=102.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------~ 157 (254)
+.+++++|... ...++++++.+++|++++|+||||||||||+++|+|+++|+.| .|.+ +
T Consensus 4 ~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 4 ARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG-EITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS-CEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhhEEEE
Confidence 45788887321 1258889999999999999999999999999999999988643 3322 1
Q ss_pred cCCCccccC-----CCC---Cccc---c-------cc---c------------cccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 158 DTSNEIGGD-----GDI---PHSA---I-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 158 ~~~~ei~~~-----~~~---~~~~---~-------~~---~------------~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+...+... ..+ +... . +. . +....+|+||+||+++|+|+..+|++|
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 111111000 000 0000 0 00 0 112368999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|+.. +.++. .|.|+|+++|+.+.... +++++
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~v~ 208 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVD-ADKIY 208 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHH-CSEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHh-CCEEE
Confidence 9999999999754 44554 58999999999877765 55543
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.90 E-value=7.9e-24 Score=183.16 Aligned_cols=149 Identities=18% Similarity=0.165 Sum_probs=103.8
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
+.+++++|+.. ....++++++.+++|++++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 98 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEE
Confidence 56788887641 112578899999999999999999999999999999999886321 13333
Q ss_pred cCCCccccC--------C--CCCc-ccc------------------c----cccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 158 DTSNEIGGD--------G--DIPH-SAI------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 158 ~~~~ei~~~--------~--~~~~-~~~------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
.+...+... . .... ... + ..+....+|+||+||+++|+||..+|++|
T Consensus 99 ~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 99 GQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp CSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 333221100 0 0000 000 0 01223457999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHh-CCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAE-RGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~-~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|... +.++.+ .|.|+|+++|+.+.... +++++
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~ 227 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHIL 227 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEE
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 9999999999876 222222 38899999999876654 55543
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.89 E-value=1.1e-23 Score=181.92 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=102.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCCCC-------------------eEE
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEFQK-------------------RVV 155 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~~~-------------------~i~ 155 (254)
+.+++++|+... .++++++.+++|++++|+||||||||||+|+|+|++ +|+.|. .+.
T Consensus 23 ~~~l~~~y~~~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 23 IKDLHVSVEDKA--ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp EEEEEEEETTEE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred EEeEEEEECCEE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence 568888886543 488999999999999999999999999999999984 443221 133
Q ss_pred EEcCCCccccC----------C-------C---CCcc----c-------ccc-----ccccC-CCChhHHHHHHHHHHHc
Q 025371 156 IVDTSNEIGGD----------G-------D---IPHS----A-------IGT-----ARRMQ-VPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 156 ~~~~~~ei~~~----------~-------~---~~~~----~-------~~~-----~~~~~-~~s~g~~~~~~l~~al~ 198 (254)
++.+...+... . . .... . ++. .+... .+|+||+||+++|+||.
T Consensus 101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 33332211000 0 0 0000 0 000 11223 38999999999999999
Q ss_pred cCCCEEEEeCCCchHHHHHHH-------HHHhCCceEEEEEchhhHHHHh-CChhh
Q 025371 199 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENII-KNPIL 246 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~~~-------~~~~~G~~vi~t~H~~~~~~~~-~~~~~ 246 (254)
.+|++||+|||++++|..... ++.+.|.|+|+++|+.+....+ +++++
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEE
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEE
Confidence 999999999999999987622 2234589999999998766654 55544
No 37
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.89 E-value=1.1e-23 Score=184.87 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|.... ..++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 56 ~~~vs~~y~~~~-~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~ 134 (306)
T 3nh6_A 56 FENVHFSYADGR-ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134 (306)
T ss_dssp EEEEEEESSTTC-EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCC-ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEe
Confidence 468889885422 2588999999999999999999999999999999999986321 133333
Q ss_pred CCCccccC-------CCCCcc---cccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD-------GDIPHS---AIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~-------~~~~~~---~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+... ...+.. .... .+....+|+||+||++|||||..+|++||+
T Consensus 135 Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp SSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 32221100 000000 0000 011235799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|+.. +.++ ..+.|+|+++|+.+.... +++++
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~~~~-aD~i~ 259 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKV-CANRTTIVVAHRLSTVVN-ADQIL 259 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHH-HTTSEEEEECCSHHHHHT-CSEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEEcChHHHHc-CCEEE
Confidence 99999999876 2232 347899999999887766 45443
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.89 E-value=2.7e-23 Score=178.76 Aligned_cols=146 Identities=14% Similarity=0.229 Sum_probs=101.6
Q ss_pred EEEEEEEECcee-ecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeE-------------------EE
Q 025371 97 IVGLTCRVGRAV-SGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRV-------------------VI 156 (254)
Q Consensus 97 ~~~l~ir~~~~~-~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i-------------------~~ 156 (254)
+.+++++|+... ...++++++.+++|++++|+||||||||||+++|+|++++ .+.| .+
T Consensus 20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~~~i~~ 97 (260)
T 2ghi_A 20 FSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIRSIIGI 97 (260)
T ss_dssp EEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHHTTEEE
T ss_pred EEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHhccEEE
Confidence 567888876431 2358889999999999999999999999999999999975 2232 23
Q ss_pred EcCCCccccC--------CCC--Ccccc-------cc---------------ccccCCCChhHHHHHHHHHHHccCCCEE
Q 025371 157 VDTSNEIGGD--------GDI--PHSAI-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 204 (254)
Q Consensus 157 ~~~~~ei~~~--------~~~--~~~~~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~vi 204 (254)
+.+...+... ... ..... +. .+....+|+||+||+++|+|+..+|++|
T Consensus 98 v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 177 (260)
T 2ghi_A 98 VPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIV 177 (260)
T ss_dssp ECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 3222211000 000 00000 00 0122468999999999999999999999
Q ss_pred EEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 205 IVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 205 ilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|+|||++++|+.. +.++. .|.|+|+++|+.+.... +++++
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~~-~d~i~ 224 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTISS-AESII 224 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGSTT-CSEEE
T ss_pred EEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHh-CCEEE
Confidence 9999999999876 33333 48899999999776654 44443
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=8.7e-23 Score=175.81 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=100.1
Q ss_pred EEEEEEEECce--eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC-------CCccc-cC
Q 025371 97 IVGLTCRVGRA--VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------SNEIG-GD 166 (254)
Q Consensus 97 ~~~l~ir~~~~--~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~-------~~ei~-~~ 166 (254)
+.+++++|+.. ....++++++.++ |++++|+||||||||||+++|+|++ |+. +.|.+... ...+. +.
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~-G~I~~~g~~~~~~~~~~~i~~~v 80 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS-GNIFINGMEVRKIRNYIRYSTNL 80 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGCSCCTTEEECC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC-cEEEECCEECcchHHhhheEEEe
Confidence 45788887541 0124888999999 9999999999999999999999999 763 33322110 11122 21
Q ss_pred CCCC--ccc---------------------------cc---cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 167 GDIP--HSA---------------------------IG---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 167 ~~~~--~~~---------------------------~~---~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
.+.+ ... +. ..+....+|+||+||+++|+||..+|++|++|||++++|
T Consensus 81 ~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 160 (263)
T 2pjz_A 81 PEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160 (263)
T ss_dssp GGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCC
T ss_pred CCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccC
Confidence 0000 000 00 012234579999999999999999999999999999999
Q ss_pred HHHHHHH----HhCCceEEEEEchhhHHHHhCC-hhh
Q 025371 215 AHACRSI----AERGVMLIGTAHGEWLENIIKN-PIL 246 (254)
Q Consensus 215 ~~~~~~~----~~~G~~vi~t~H~~~~~~~~~~-~~~ 246 (254)
......+ .+...++|+++|+.+....+++ +++
T Consensus 161 ~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~ 197 (263)
T 2pjz_A 161 AARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAY 197 (263)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEE
T ss_pred HHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEE
Confidence 8873322 1211299999999776666666 543
No 40
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.88 E-value=7.8e-22 Score=177.20 Aligned_cols=222 Identities=18% Similarity=0.216 Sum_probs=149.7
Q ss_pred HHhcCCCCCCeEEEEEecCCCcEEEEeccCCceeccccCCCHHHHHHHHHHhcccC----CCceeEEcCc---eeEEeEE
Q 025371 18 RLQNDSKRGQLLEVILDLGRLPEARYLGEFGGKYLRSTEVSVEELEYAQSAVGEFG----GDNRAGIEGT---LHRISAI 90 (254)
Q Consensus 18 ~l~~~~~~~~v~ei~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~---~~Rv~~~ 90 (254)
+|.+++.+++++||++|.+.++++.+.|.+ .......+|..++..++..++... ....+.+... ..|++.+
T Consensus 28 ~l~~~l~d~~v~dI~in~~~~v~v~~~G~~--~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~Ri~~v 105 (361)
T 2gza_A 28 PLRPWLDDPQITEVCVNRPGEVFCERASAW--EYYAVPNLDYEHLISLGTATARFVDQDISDSRPVLSAILPMGERIQIV 105 (361)
T ss_dssp GGHHHHSCTTEEEEEESSTTEEEEEETTEE--EEEECTTCCHHHHHHHHHHHHHHTTCCCSSSSCEEEEECTTSCEEEEE
T ss_pred cHHHHhcCCCCEEEEEcCCCEEEEEECCeE--EEeCCCCCCHHHHHHHHHHHHHHcCCccCCCCCeEEEEcCCCcEEEEE
Confidence 356678889999999998778888777654 223235799999999887765432 2223334322 2799999
Q ss_pred ecC---CCcEEEEEEEECcee-e---------------------c--------------chhhhhccccCCcEEEEECCC
Q 025371 91 RSR---KGAIVGLTCRVGRAV-S---------------------G--------------HIDMVYDLLHYGKSILFVGRP 131 (254)
Q Consensus 91 ~~~---~g~~~~l~ir~~~~~-~---------------------~--------------~~~~l~~~i~~g~~~~i~G~~ 131 (254)
.+| .+ ...+++|..... . . .++.+++.+++|++++|+|||
T Consensus 106 l~p~~~~~-~~~~~ir~~~~~~itl~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~s 184 (361)
T 2gza_A 106 RPPACEHG-TISVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGET 184 (361)
T ss_dssp CTTTBCTT-CCEEEEECCCCCCCCHHHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESS
T ss_pred ecCccCCC-CeEEEEEecCCCCCCHHHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCC
Confidence 855 23 126777764211 1 0 116677789999999999999
Q ss_pred CCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCcccccccc-ccCCC--ChhHHHHHHHHHHHccCCCEEEEeC
Q 025371 132 GVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR-RMQVP--EPSLQHKVMIEAVENHMPEVIIVDE 208 (254)
Q Consensus 132 GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~-~~~~~--s~g~~~~~~l~~al~~~P~viilDE 208 (254)
|||||||+++|+++++++ .+++++++..++.... .. ..+.... +-... +.+..++..++.+++++||++++||
T Consensus 185 GsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~-~~-~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e 260 (361)
T 2gza_A 185 GSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPD-HP-NHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAE 260 (361)
T ss_dssp SSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTT-CS-SEEEEECC----------CCHHHHHHHHTTSCCSEEEESC
T ss_pred CCCHHHHHHHHHhcCCCC--ceEEEECCccccCccc-cC-CEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999999984 4567777665543210 11 1111110 11111 2455678899999999999999999
Q ss_pred CCchHHHHHHHHHHhCCc-eEEEEEchhhHHHHhCChhhh
Q 025371 209 IGTEAEAHACRSIAERGV-MLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 209 p~~~ld~~~~~~~~~~G~-~vi~t~H~~~~~~~~~~~~~~ 247 (254)
++.. +...+.+...+|+ +++.++|+.++...++|....
T Consensus 261 ~r~~-~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l 299 (361)
T 2gza_A 261 LRGG-EAYDFINVAASGHGGSITSCHAGSCELTFERLALM 299 (361)
T ss_dssp CCST-HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHH
T ss_pred chHH-HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHH
Confidence 9986 4444555567887 689999999988887765543
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.2e-23 Score=187.50 Aligned_cols=146 Identities=12% Similarity=0.101 Sum_probs=100.0
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE-------------------E
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI-------------------V 157 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~-------------------~ 157 (254)
+.+++++|.......++++++.+++|++++|+||||||||||||+|+|+++ + .+.|.+ +
T Consensus 22 ~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~-~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-EGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp EEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E-EEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred EEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C-CeEEEECCEECCcCChHHHhCCEEEE
Confidence 568888884322235889999999999999999999999999999999987 4 333332 2
Q ss_pred cCCCccccC------CCCCc---cccc-----------cccccCC-----------CChhHHHHHHHHHHHccCCCEEEE
Q 025371 158 DTSNEIGGD------GDIPH---SAIG-----------TARRMQV-----------PEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 158 ~~~~ei~~~------~~~~~---~~~~-----------~~~~~~~-----------~s~g~~~~~~l~~al~~~P~viil 206 (254)
.|...+... ..... .... ..+.... +|+||+||+++||||..+|++|||
T Consensus 100 ~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLL 179 (390)
T 3gd7_A 100 PQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179 (390)
T ss_dssp SCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 222111000 00000 0000 0011122 899999999999999999999999
Q ss_pred eCCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|+....++ . ..|.|+|+++|+.+.... ++++
T Consensus 180 DEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~-aDri 223 (390)
T 3gd7_A 180 DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE-CDQF 223 (390)
T ss_dssp ESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTT-CSEE
T ss_pred eCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHh-CCEE
Confidence 999999998762222 1 347899999999776554 4444
No 42
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=5.4e-22 Score=186.78 Aligned_cols=146 Identities=17% Similarity=0.138 Sum_probs=103.7
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------EEcCC-----------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTS----------- 160 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------~~~~~----------- 160 (254)
+++++|+... ..+..++ .+.+|++++|+||||||||||+|+|+|+++|+.|.... .+...
T Consensus 26 ~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 26 DCVHRYGVNA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred CcEEEECCcc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 7888886532 1366777 79999999999999999999999999999887554100 00000
Q ss_pred --CccccC----CCCCc---cc-------------c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEe
Q 025371 161 --NEIGGD----GDIPH---SA-------------I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVD 207 (254)
Q Consensus 161 --~ei~~~----~~~~~---~~-------------~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilD 207 (254)
..+.+. ...+. .. . + ..+....+|+||+||++||+||..+|++||+|
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 000000 00000 00 0 0 01233457999999999999999999999999
Q ss_pred CCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 208 EIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 208 Ep~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
||++++|... +.++.+.|.++|+++|+.+....++++++
T Consensus 184 EPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~ 229 (538)
T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIH 229 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999875 44555669999999999888887777664
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.87 E-value=4.3e-22 Score=187.28 Aligned_cols=146 Identities=15% Similarity=0.140 Sum_probs=101.9
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------eEEEEcCCCccccC------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGD------ 166 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------~i~~~~~~~ei~~~------ 166 (254)
+++++++... +...++.+++|++++|+||||||||||+++|+|+++|+.|. .+.++.+.....+.
T Consensus 274 ~l~~~~~~~~---l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 274 KIIKKLGDFQ---LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp CEEEEETTEE---EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHH
T ss_pred ceEEEECCEE---EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHH
Confidence 4455554322 33345568999999999999999999999999999987443 23344332111000
Q ss_pred -----CCC--Cccc--------c----ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHH
Q 025371 167 -----GDI--PHSA--------I----GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRS 220 (254)
Q Consensus 167 -----~~~--~~~~--------~----~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~ 220 (254)
... .... + ...+....+|+||+||+++|+||..+|++||+|||++++|+.. +.+
T Consensus 351 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~ 430 (538)
T 3ozx_A 351 LENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKR 430 (538)
T ss_dssp HHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 000 0000 0 0013445679999999999999999999999999999999875 344
Q ss_pred HH-hCCceEEEEEchhhHHHHhCChhhh
Q 025371 221 IA-ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 221 ~~-~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+. +.|.++|+++|+.+....++++++.
T Consensus 431 l~~~~g~tvi~vsHdl~~~~~~aDri~v 458 (538)
T 3ozx_A 431 VTRERKAVTFIIDHDLSIHDYIADRIIV 458 (538)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 44 3589999999999888888777654
No 44
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.86 E-value=1e-21 Score=186.64 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=104.1
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEc
Confidence 56888888642123588999999999999999999999999999999999987432 122333
Q ss_pred CCCccccC--------CCCCccc---ccc----------c------------cccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 159 TSNEIGGD--------GDIPHSA---IGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 159 ~~~ei~~~--------~~~~~~~---~~~----------~------------~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
|...+... ...+... ... . .+...+|+||+||+++|||+..+|++++
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred CCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 32211100 0000000 000 0 1123579999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|||++++|+.. +.++ ..|.|+|+++|+.+..+. +++++
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~-~d~i~ 549 (582)
T 3b5x_A 504 LDEATSALDTESERAIQAALDEL-QKNKTVLVIAHRLSTIEQ-ADEIL 549 (582)
T ss_pred EECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHh-CCEEE
Confidence 999999999876 2333 248999999999887765 44443
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.86 E-value=8.9e-22 Score=185.27 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=104.3
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccCCCC----
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDI---- 169 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~~~~---- 169 (254)
++++++... .++.+++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.........+
T Consensus 292 ~l~~~~~~~---~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 292 RLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp CEEEEETTE---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHH
T ss_pred eEEEEECCE---EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHH
Confidence 455555432 245566668999999999999999999999999999887443 45566654322111000
Q ss_pred --------Cccc----------c--ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHH
Q 025371 170 --------PHSA----------I--GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 222 (254)
Q Consensus 170 --------~~~~----------~--~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~ 222 (254)
.... + ...+....+|+|++||+++|++|..+|++||+|||++++|..+ +.++.
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~ 448 (538)
T 1yqt_A 369 SKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 448 (538)
T ss_dssp HHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0000 0 0013344579999999999999999999999999999999876 33333
Q ss_pred -hCCceEEEEEchhhHHHHhCChhhh
Q 025371 223 -ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 223 -~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.|.++|+++|+.+....++++++.
T Consensus 449 ~~~g~tvi~vsHd~~~~~~~~drv~v 474 (538)
T 1yqt_A 449 EKNEKTALVVEHDVLMIDYVSDRLMV 474 (538)
T ss_dssp HHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3589999999998888877776643
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.86 E-value=4.5e-22 Score=173.64 Aligned_cols=135 Identities=12% Similarity=0.035 Sum_probs=97.5
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-----CeEEEEcCCCccccC-------CC-CCccc----
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGD-------GD-IPHSA---- 173 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-----~~i~~~~~~~ei~~~-------~~-~~~~~---- 173 (254)
.++.+++.+++|++++|+||||||||||+++|+|+++|+.| +++.++.+...+... .. .....
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 132 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSV 132 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHH
Confidence 57889999999999999999999999999999999988633 234556554332110 00 00000
Q ss_pred ---ccc---c------------cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHH-------hCCceE
Q 025371 174 ---IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-------ERGVML 228 (254)
Q Consensus 174 ---~~~---~------------~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~-------~~G~~v 228 (254)
... . .....+|+||+||+++|+|+..+|++||+|||++++|+.....+. ..|.++
T Consensus 133 ~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tv 212 (290)
T 2bbs_A 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212 (290)
T ss_dssp HHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEE
T ss_pred HHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEE
Confidence 000 0 012468999999999999999999999999999999998733322 237899
Q ss_pred EEEEchhhHHHHhCChhh
Q 025371 229 IGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 229 i~t~H~~~~~~~~~~~~~ 246 (254)
|+++|+.+.... +++++
T Consensus 213 iivtHd~~~~~~-~d~i~ 229 (290)
T 2bbs_A 213 ILVTSKMEHLKK-ADKIL 229 (290)
T ss_dssp EEECCCHHHHHH-SSEEE
T ss_pred EEEecCHHHHHc-CCEEE
Confidence 999999877665 55543
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=1.4e-21 Score=186.18 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=104.1
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-------EEcCC----------
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTS---------- 160 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-------~~~~~---------- 160 (254)
.+++++|+... ..+..++ .+++|++++|+||||||||||+++|+|+++|+.|.... .+...
T Consensus 95 ~~ls~~yg~~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 37888886532 1366777 79999999999999999999999999999887555100 00000
Q ss_pred ---CccccC-C---CCCc---cc-------------c-----------ccccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 161 ---NEIGGD-G---DIPH---SA-------------I-----------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 161 ---~ei~~~-~---~~~~---~~-------------~-----------~~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
..+.+. . ..+. .. . ...+....+|+||+||++||+||.++|++||+
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000000 0 0000 00 0 00123445799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|... +.++.+.|.++|+++|+.+....+.++++
T Consensus 253 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~ 299 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH 299 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEE
Confidence 99999999875 44555669999999999888887776654
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.86 E-value=9.5e-22 Score=187.25 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=104.3
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccCCCC----
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDI---- 169 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~~~~---- 169 (254)
++++++... .++.+++.+.+|++++|+||||||||||+++|+|+++|+.|. ++.++.+.........+
T Consensus 362 ~l~~~~~~~---~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 362 RLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp CEEEECSSC---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHH
T ss_pred ceEEEecce---EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHH
Confidence 445554331 245556668999999999999999999999999999987443 45566654332111000
Q ss_pred --C---c---cc-c-------c----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHH
Q 025371 170 --P---H---SA-I-------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA 222 (254)
Q Consensus 170 --~---~---~~-~-------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~ 222 (254)
. . .. . + ..+....+|+||+||+++|++|..+|++||+|||++++|... +.++.
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 518 (607)
T 3bk7_A 439 SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM 518 (607)
T ss_dssp HHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 0 0 00 0 0 013344579999999999999999999999999999999876 33433
Q ss_pred -hCCceEEEEEchhhHHHHhCChhhh
Q 025371 223 -ERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 223 -~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
+.|.++|+++|+.+....++++++.
T Consensus 519 ~~~g~tvi~vsHd~~~~~~~adrv~v 544 (607)
T 3bk7_A 519 EKNEKTALVVEHDVLMIDYVSDRLIV 544 (607)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4589999999998888887777653
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.85 E-value=5.4e-22 Score=188.39 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=103.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 46888888654334688999999999999999999999999999999999986321 233343
Q ss_pred CCCccccCC-------CCCcc---cccc----------------------ccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGDG-------DIPHS---AIGT----------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~~-------~~~~~---~~~~----------------------~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+.... ..+.. .... ..+...+|+||+||+++|||+..+|+++++
T Consensus 422 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illl 501 (578)
T 4a82_A 422 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 501 (578)
T ss_dssp SSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 332221100 00000 0000 011235799999999999999999999999
Q ss_pred eCCCchHHHHHH---HHH---HhCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHAC---RSI---AERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~~---~~~---~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|+... .++ ...|+|+|+++|+.+.... ++++
T Consensus 502 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i 545 (578)
T 4a82_A 502 DEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKI 545 (578)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEE
T ss_pred ECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEE
Confidence 999999998762 111 2357899999999876654 4443
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.3e-21 Score=184.48 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=98.2
Q ss_pred hhhhhccccCC-----cEEEEECCCCCCHHHHHHHHHhccCcCCCC-----eEEEEcCCCccccC------------CCC
Q 025371 112 IDMVYDLLHYG-----KSILFVGRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD------------GDI 169 (254)
Q Consensus 112 ~~~l~~~i~~g-----~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~-----~i~~~~~~~ei~~~------------~~~ 169 (254)
++.+++.+.+| ++++|+||||||||||+++|+|+++|+.|. .+.++.+.....+. ...
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~ 442 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQF 442 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTT
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhccc
Confidence 34555656655 889999999999999999999999987553 34555443211110 000
Q ss_pred Ccccc------------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHH-hCCceEE
Q 025371 170 PHSAI------------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIA-ERGVMLI 229 (254)
Q Consensus 170 ~~~~~------------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~-~~G~~vi 229 (254)
..... ...+....+|+||+||+++|++|.++|++||+|||++++|..+ +.++. +.|.|+|
T Consensus 443 ~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tvi 522 (608)
T 3j16_B 443 LNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522 (608)
T ss_dssp TSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred ccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 00000 0123455689999999999999999999999999999999865 34443 4599999
Q ss_pred EEEchhhHHHHhCChhhh
Q 025371 230 GTAHGEWLENIIKNPILS 247 (254)
Q Consensus 230 ~t~H~~~~~~~~~~~~~~ 247 (254)
+++|+.+....++++++.
T Consensus 523 ivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 523 IVEHDFIMATYLADKVIV 540 (608)
T ss_dssp EECSCHHHHHHHCSEEEE
T ss_pred EEeCCHHHHHHhCCEEEE
Confidence 999998888888777654
No 51
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.85 E-value=1.1e-21 Score=186.40 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=103.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 423 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEEC
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEc
Confidence 46788888632123588899999999999999999999999999999999986321 133333
Q ss_pred CCCccccC--------CCCCccc---c-------cc---------------ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 159 TSNEIGGD--------GDIPHSA---I-------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 159 ~~~ei~~~--------~~~~~~~---~-------~~---------------~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
|...+... ...+... . +. .++...+|+||+||+++|||+..+|++++
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 33221100 0000000 0 00 01123579999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+|||++++|+.. +.++. .|.|+|+++|+.+..+. ++++
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i 548 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQ-ADEI 548 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTTT-CSEE
T ss_pred EECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHh-CCEE
Confidence 999999999876 33333 48999999999776654 4444
No 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.84 E-value=1.9e-21 Score=185.18 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=104.1
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
+.+++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v 423 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEE
Confidence 56888888642 112578899999999999999999999999999999999986321 23344
Q ss_pred cCCCccccC-------CCCCc---cc---ccc------------------c----cccCCCChhHHHHHHHHHHHccCCC
Q 025371 158 DTSNEIGGD-------GDIPH---SA---IGT------------------A----RRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 158 ~~~~ei~~~-------~~~~~---~~---~~~------------------~----~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
.|...+... ...+. .. ... . .+...+|+||+||+++|||+..+|+
T Consensus 424 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~ 503 (595)
T 2yl4_A 424 SQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503 (595)
T ss_dssp CSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCS
T ss_pred ccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 443222110 00010 00 000 0 0114579999999999999999999
Q ss_pred EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 203 VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 203 viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
++|+|||++++|+.. +.++. .|.|+|+++|+.+..+. +++++
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~ 552 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLSTIKN-ANMVA 552 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHH-TTSEEEEECCCHHHHHH-SSEEE
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHc-CCEEE
Confidence 999999999999876 33333 38999999999887765 44443
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1.5e-21 Score=185.98 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=103.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+... ..++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 357 ~~~v~~~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 357 FKNVWFSYDKKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp EEEEECCSSSSS-CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEEECCCCC-ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 457777775432 3588999999999999999999999999999999999986331 233443
Q ss_pred CCCccccC--------C--CCCcccccc----------c------------cccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD--------G--DIPHSAIGT----------A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~--------~--~~~~~~~~~----------~------------~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+... . ......... . .+...+|+||+||+++|||+..+|+++|+
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 43222110 0 000000000 0 01134799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
|||++++|+.. +.++ ..|+|+|+++|+.+.... ++++
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~-~d~i 559 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAHRLNTIKN-ADLI 559 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHH-HTTSEEEEESCCTTHHHH-CSEE
T ss_pred ECCccCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHc-CCEE
Confidence 99999999876 2333 358999999999887776 4444
No 54
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1.9e-21 Score=184.92 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=104.4
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEEc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIVD 158 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~~ 158 (254)
+.+++++|+......++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++.
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 423 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP 423 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEEC
T ss_pred EEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEEC
Confidence 45788888544334688999999999999999999999999999999999986321 133333
Q ss_pred CCCccccC-------CCCCcc---cc------------------c----cccccCCCChhHHHHHHHHHHHccCCCEEEE
Q 025371 159 TSNEIGGD-------GDIPHS---AI------------------G----TARRMQVPEPSLQHKVMIEAVENHMPEVIIV 206 (254)
Q Consensus 159 ~~~ei~~~-------~~~~~~---~~------------------~----~~~~~~~~s~g~~~~~~l~~al~~~P~viil 206 (254)
|...+... ...+.. .. + ..++...+|+||+||+++|||+..+|+++|+
T Consensus 424 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illl 503 (587)
T 3qf4_A 424 QETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503 (587)
T ss_dssp SSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33221100 000000 00 0 0012235799999999999999999999999
Q ss_pred eCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 207 DEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 207 DEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
|||++++|+.. +.++ ..|+|+|+++|+.+... .+++++
T Consensus 504 DEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~-~~d~i~ 548 (587)
T 3qf4_A 504 DDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTAL-LADKIL 548 (587)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHT-TSSEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHH-hCCEEE
Confidence 99999999876 2222 35899999999988765 444443
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6e-21 Score=181.60 Aligned_cols=145 Identities=16% Similarity=0.174 Sum_probs=100.2
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE----------EEcCCC-------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSN------- 161 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~----------~~~~~~------- 161 (254)
+++.+|+.... .++.+. .+++|++++|+||||||||||+|+|+|++.|+.|. +. ++....
T Consensus 82 ~~~~~Y~~~~~-~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~-i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSANSF-KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR-FDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTTSC-EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCCce-eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce-EecccchhhhhheecChhhhhhhhH
Confidence 57777754321 123333 47899999999999999999999999999987553 20 000000
Q ss_pred ----cc------ccCCCCC----c-----------------ccc-----------ccccccCCCChhHHHHHHHHHHHcc
Q 025371 162 ----EI------GGDGDIP----H-----------------SAI-----------GTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 162 ----ei------~~~~~~~----~-----------------~~~-----------~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
++ .+....+ . ... ...+....+|+|++||+++|+||.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 00 0000000 0 000 0113455679999999999999999
Q ss_pred CCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 200 MPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+|++||+|||++++|+.. +.++.+.|.++|+++|+.+....++++++
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~ 292 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVC 292 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999875 33445669999999999888888777664
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=8.1e-21 Score=178.57 Aligned_cols=127 Identities=17% Similarity=0.150 Sum_probs=89.8
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE---------EEcCC-----------Cc------cccCCCCCcc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVV---------IVDTS-----------NE------IGGDGDIPHS 172 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~---------~~~~~-----------~e------i~~~~~~~~~ 172 (254)
.++|++++|+||||||||||+|+|+|++.|+.|.... .+... .. +.+....+..
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 6789999999999999999999999999887543100 00000 00 0000000000
Q ss_pred ---c-------------c-----------ccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-------H
Q 025371 173 ---A-------------I-----------GTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------C 218 (254)
Q Consensus 173 ---~-------------~-----------~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-------~ 218 (254)
. . ...+....+|+|++||++||+||.++|++||+|||++++|+.. +
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l 181 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI 181 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0 0 0013344579999999999999999999999999999999875 3
Q ss_pred HHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 219 RSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 219 ~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
.++.+ |.++|+++|+.+....+++.+.
T Consensus 182 ~~l~~-g~tii~vsHdl~~~~~~~d~i~ 208 (538)
T 3ozx_A 182 RELLK-NKYVIVVDHDLIVLDYLTDLIH 208 (538)
T ss_dssp HHHCT-TSEEEEECSCHHHHHHHCSEEE
T ss_pred HHHhC-CCEEEEEEeChHHHHhhCCEEE
Confidence 34434 8999999999888888877654
No 57
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=6.5e-20 Score=157.72 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=90.2
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHH
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 190 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~ 190 (254)
.++.++ +++|++++|+||||||||||+++|+|+++++..++|.+.+++.++..... ..+.....+.. .....+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~---~~~v~q~~~gl--~~~~l~ 88 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK---KSIVNQREVGE--DTKSFA 88 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS---SSEEEEEEBTT--TBSCHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc---ceeeeHHHhCC--CHHHHH
Confidence 355565 88999999999999999999999999998753567777776644321100 00000011111 112458
Q ss_pred HHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 191 VMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 191 ~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
.+++++|+++|++|++|||++......+.+..++|+++++|+|+.++...+++.
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri 142 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRI 142 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHH
Confidence 999999999999999999996555544555567899999999998877666543
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.80 E-value=1.9e-20 Score=185.03 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=56.9
Q ss_pred cCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHH----HhCCceEEEEEchhhHHHHhCChhhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~----~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
...+|+||+||++|+++|..+|++||||||++++|......+ .+.|.++|+++|+.+....++++++.
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEEC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEE
Confidence 345899999999999999999999999999999999874333 34477999999998888777776654
No 59
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=1.6e-21 Score=157.29 Aligned_cols=127 Identities=9% Similarity=0.097 Sum_probs=83.3
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHH------------HHHhccCcCCCCeEEEEcC-CCccccCC--CCCccccccccc
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMR------------EIARVLSDEFQKRVVIVDT-SNEIGGDG--DIPHSAIGTARR 179 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~------------~l~g~~~~~~~~~i~~~~~-~~ei~~~~--~~~~~~~~~~~~ 179 (254)
+++.+++|++++|+||||||||||++ .+.|++.++.+...+ ... ..++.... ............
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~ 80 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTV-TGAAFDVLHYIVSKRLQLGKLTVVDA 80 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGG-HHHHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence 45678999999999999999999999 666666654221000 000 00000000 000000000122
Q ss_pred cCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH----------------H-------HHHHHhCCceEEEEEchhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH----------------A-------CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~----------------~-------~~~~~~~G~~vi~t~H~~~ 236 (254)
....|+|++|++++|+++..+|++|++|||++++|.. . +.++.+.|.++|+++|+.+
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 3345889999999999999999999999999999987 2 1223455999999999987
Q ss_pred HHHHhC
Q 025371 237 LENIIK 242 (254)
Q Consensus 237 ~~~~~~ 242 (254)
..+.+.
T Consensus 161 ~~~~~~ 166 (171)
T 4gp7_A 161 EVEEVV 166 (171)
T ss_dssp HHHHEE
T ss_pred Hhhhhh
Confidence 776553
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.80 E-value=9.9e-20 Score=175.58 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=55.3
Q ss_pred cCCCChhHHHHHHHHHHHccCCC--EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~P~--viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
...+|+||+||++||+||.++|+ +||+|||++++|+.. +.++.+.|.|+|+++|+.+.... +++++
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~ii 274 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA-ADYLI 274 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH-CSEEE
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh-CCEEE
Confidence 44579999999999999999988 999999999998754 45556679999999999887765 55543
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.80 E-value=2.6e-19 Score=177.02 Aligned_cols=147 Identities=17% Similarity=0.203 Sum_probs=103.2
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHh-ccC---cCCCCeEEEEcCCC-ccccC-------
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR-VLS---DEFQKRVVIVDTSN-EIGGD------- 166 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g-~~~---~~~~~~i~~~~~~~-ei~~~------- 166 (254)
+++++|+... .++++++.+.+|++++|+||||||||||+|+|+| .+. .....++.++++.. .....
T Consensus 440 ~ls~~yg~~~--iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l 517 (986)
T 2iw3_A 440 EFSLAYGAKI--LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFV 517 (986)
T ss_dssp EEEEEETTEE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHH
T ss_pred eEEEEECCEE--eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHH
Confidence 6778887654 4888999999999999999999999999999994 331 10112345554321 11000
Q ss_pred C-CCC--ccc-------cc-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHH----HHhCCce
Q 025371 167 G-DIP--HSA-------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVM 227 (254)
Q Consensus 167 ~-~~~--~~~-------~~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~----~~~~G~~ 227 (254)
. ... ... ++ ..+....+|+||+||++|+++|..+|++||||||++++|...... +.+.|.+
T Consensus 518 ~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~t 597 (986)
T 2iw3_A 518 FESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGIT 597 (986)
T ss_dssp HTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSE
T ss_pred HHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCE
Confidence 0 000 000 00 013345689999999999999999999999999999999887222 2236899
Q ss_pred EEEEEchhhHHHHhCChhhh
Q 025371 228 LIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 228 vi~t~H~~~~~~~~~~~~~~ 247 (254)
+|+++|+.+....++++++.
T Consensus 598 vIivSHdl~~l~~~adrii~ 617 (986)
T 2iw3_A 598 SITISHDSVFLDNVCEYIIN 617 (986)
T ss_dssp EEEECSCHHHHHHHCSEEEE
T ss_pred EEEEECCHHHHHHhCCEEEE
Confidence 99999998888777666543
No 62
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.79 E-value=1.3e-18 Score=158.86 Aligned_cols=203 Identities=18% Similarity=0.198 Sum_probs=133.8
Q ss_pred CCeEEEEEec---CCCcEEEEeccCCceeccccC--CCHHHHHHHHHHhcccC-------CCceeE--EcCc--eeEEeE
Q 025371 26 GQLLEVILDL---GRLPEARYLGEFGGKYLRSTE--VSVEELEYAQSAVGEFG-------GDNRAG--IEGT--LHRISA 89 (254)
Q Consensus 26 ~~v~ei~i~~---g~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~-------~~~~~~--~~~~--~~Rv~~ 89 (254)
.+++||||.+ +.++.+|.+|.+. .....+ +.. .+...+..++..+ .+.+.. +.+. .+|++.
T Consensus 47 ~~aSDIhi~~~~~~~~v~~RidG~l~--~~~~~~~~~~~-~l~~~ik~~a~~~~~e~~~~q~g~~~~~~~~~~~~~Rvs~ 123 (418)
T 1p9r_A 47 EGASDIHIETFEKTLSIRFRVDGVLR--EVLAPSRKLSS-LLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVST 123 (418)
T ss_dssp HTCSEEEEEEETTEEEEEEEETTEEE--EEECCCGGGHH-HHHHHHHHHTTCCTTCCSSCEEEEEEC-----CEEEEEEE
T ss_pred CCCeeEEEEecCCceeEEEEECCEEE--ECCcCchhhhH-HHHHHHHHHcCCChHHhcCCCCceEEEEECCceEEEEEEE
Confidence 6899999998 6688888888763 333222 222 2333233343321 122222 3342 389999
Q ss_pred EecCCCcEEEEEEEECcee--ecch----------hhhhcc-ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE
Q 025371 90 IRSRKGAIVGLTCRVGRAV--SGHI----------DMVYDL-LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI 156 (254)
Q Consensus 90 ~~~~~g~~~~l~ir~~~~~--~~~~----------~~l~~~-i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~ 156 (254)
++...|. ++++|..... ...+ ..+... ..+|++++|+|||||||||||++|++++++. .++|.+
T Consensus 124 ~~~~~g~--~~viR~~~~~~~~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~ 200 (418)
T 1p9r_A 124 MPSSHGE--RVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILT 200 (418)
T ss_dssp ECCTTSC--EEEECCEETTTTCCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEE
T ss_pred eecCCCc--EEEEEecccccCCCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence 9887786 8888864421 1011 122222 3578899999999999999999999999876 678888
Q ss_pred EcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEchhh
Q 025371 157 VDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 157 ~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~~~ 236 (254)
++++.++.. +..... .+. ...+.....++..+|+++|++++++|+++.+.+.....+..+||.++.|.|+++
T Consensus 201 ~ed~ie~~~----~~~~q~---~v~-~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~ 272 (418)
T 1p9r_A 201 VEDPIEFDI----DGIGQT---QVN-PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 272 (418)
T ss_dssp EESSCCSCC----SSSEEE---ECB-GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred ecccchhcc----CCcceE---EEc-cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh
Confidence 888776532 111100 000 012344567888999999999999999998888777788889999999999877
Q ss_pred HHHHhC
Q 025371 237 LENIIK 242 (254)
Q Consensus 237 ~~~~~~ 242 (254)
..+++.
T Consensus 273 ~~~~i~ 278 (418)
T 1p9r_A 273 AVGAVT 278 (418)
T ss_dssp SHHHHH
T ss_pred HHHHHH
Confidence 665554
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.79 E-value=1.2e-19 Score=185.54 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=102.7
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
+.+++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|+++|+.|. ++.++
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v 469 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEE
Confidence 45888888642 224688999999999999999999999999999999999986332 13344
Q ss_pred cCCCccccC----------CCCCcccc------------------cc----ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD----------GDIPHSAI------------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~----------~~~~~~~~------------------~~----~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.|...+... .......+ +. ..+...+|+||+||+++|||+..+|++||
T Consensus 470 ~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ili 549 (1284)
T 3g5u_A 470 SQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549 (1284)
T ss_dssp CSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEE
Confidence 443222110 00000000 00 01123579999999999999999999999
Q ss_pred EeCCCchHHHHH---HH---HHHhCCceEEEEEchhhHHHHh
Q 025371 206 VDEIGTEAEAHA---CR---SIAERGVMLIGTAHGEWLENII 241 (254)
Q Consensus 206 lDEp~~~ld~~~---~~---~~~~~G~~vi~t~H~~~~~~~~ 241 (254)
+|||++++|... +. +....|.|+|+++|..+....+
T Consensus 550 LDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~ 591 (1284)
T 3g5u_A 550 LDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNA 591 (1284)
T ss_dssp EESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTC
T ss_pred EECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence 999999999876 11 1124589999999998776553
No 64
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.77 E-value=1.6e-19 Score=185.19 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=103.6
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
..+++++|+.. ....++++++.+++|+.++|+|+||||||||+++|.|++.|+.|. ++.++
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V 1158 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIV 1158 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 46889998643 224689999999999999999999999999999999999987432 23344
Q ss_pred cCCCccccC--------CCCCcc----ccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCE
Q 025371 158 DTSNEIGGD--------GDIPHS----AIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 158 ~~~~ei~~~--------~~~~~~----~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
+|.+.+... +.-|.. .+. .. .+-..+|+||+||.++|||+..+|++
T Consensus 1159 ~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1159 SQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp CSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 443322110 000000 000 00 11123699999999999999999999
Q ss_pred EEEeCCCchHHHHH---HHHHH---hCCceEEEEEchhhHHHHhCC
Q 025371 204 IIVDEIGTEAEAHA---CRSIA---ERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 204 iilDEp~~~ld~~~---~~~~~---~~G~~vi~t~H~~~~~~~~~~ 243 (254)
|||||||+++|..+ +.+.. ..|+|+|+++|..+....+++
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~ 1284 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADC 1284 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSE
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCE
Confidence 99999999999876 33332 248899999998765555443
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.76 E-value=4.5e-19 Score=181.42 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=102.5
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC------------------CeEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ------------------KRVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~------------------~~i~~~ 157 (254)
+.+++++|+.. ....++++++.+++|+.++|+||||||||||+++|+|+++|+.| .++.++
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEE
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEE
Confidence 45777777542 22368899999999999999999999999999999999988622 123344
Q ss_pred cCCCccccC-------CCCCcc-----ccc------------------cc----cccCCCChhHHHHHHHHHHHccCCCE
Q 025371 158 DTSNEIGGD-------GDIPHS-----AIG------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEV 203 (254)
Q Consensus 158 ~~~~ei~~~-------~~~~~~-----~~~------------------~~----~~~~~~s~g~~~~~~l~~al~~~P~v 203 (254)
.|...+... ...+.. .+. .. .....+|+||+||+++|||+..+|++
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 443321100 000000 000 00 11124799999999999999999999
Q ss_pred EEEeCCCchHHHHH---HHH---HHhCCceEEEEEchhhHHHHhCChh
Q 025371 204 IIVDEIGTEAEAHA---CRS---IAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 204 iilDEp~~~ld~~~---~~~---~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
||+|||++++|..+ +.+ -...|.|+|+++|+.+.... ++++
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri 1239 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLI 1239 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEE
Confidence 99999999999876 111 12458999999999776655 4443
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.76 E-value=3.1e-19 Score=183.03 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=103.1
Q ss_pred EEEEEEEECce-eecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCC------------------eEEEE
Q 025371 97 IVGLTCRVGRA-VSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQK------------------RVVIV 157 (254)
Q Consensus 97 ~~~l~ir~~~~-~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~------------------~i~~~ 157 (254)
..+++++|+.. ....++++++.+++|+.++|+||+|||||||+++|.|++.|..|. ++.++
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence 45888888643 234688999999999999999999999999999999999986332 23444
Q ss_pred cCCCccccC---------C-CCCccccc------------------c----ccccCCCChhHHHHHHHHHHHccCCCEEE
Q 025371 158 DTSNEIGGD---------G-DIPHSAIG------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVII 205 (254)
Q Consensus 158 ~~~~ei~~~---------~-~~~~~~~~------------------~----~~~~~~~s~g~~~~~~l~~al~~~P~vii 205 (254)
.|..-+... . ......+. . -.+-..+||||+||+++|||+..+|+++|
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE
Confidence 443322110 0 00000000 0 01122469999999999999999999999
Q ss_pred EeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 206 VDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 206 lDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
||||++++|... +.++ ..|+|+|+++|..+....++
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~-~~~~T~iiiaHrls~i~~aD 620 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKA-AKGRTTIIIAHRLSTIRNAD 620 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHH-HTTSEEEEECSCTTTTTTCS
T ss_pred EecccccCCHHHHHHHHHHHHHH-hCCCEEEEEcccHHHHHhCC
Confidence 999999999754 2222 35899999999987665544
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.74 E-value=3e-18 Score=165.19 Aligned_cols=66 Identities=14% Similarity=0.124 Sum_probs=54.3
Q ss_pred cCCCChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
...+|+||+||++||+||.++| ++||+|||++++|+.. +.++.+.|.|+|+++|+.+.... +++++
T Consensus 541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~-~d~i~ 616 (670)
T 3ux8_A 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT-ADYII 616 (670)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEE
T ss_pred chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-CCEEE
Confidence 3457999999999999999876 5999999999999765 44555679999999999887654 55544
No 68
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.69 E-value=3.1e-17 Score=133.16 Aligned_cols=120 Identities=23% Similarity=0.155 Sum_probs=74.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEE-EEc---CCCccccCCCCC--cccc----------ccccccCCCChhH
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVV-IVD---TSNEIGGDGDIP--HSAI----------GTARRMQVPEPSL 187 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~-~~~---~~~ei~~~~~~~--~~~~----------~~~~~~~~~s~g~ 187 (254)
.++|+||||||||||+++|+|++.....+... -.. ....+.+....+ ...+ ...+....+|+|+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 58999999999999999999997522111000 000 000111100000 0000 0012233478999
Q ss_pred HHHHHHHHH-----HccCCCEEEEeC--CCchHHHHH---HHHHHhC-CceEEEEEc---hhhHHHHhCC
Q 025371 188 QHKVMIEAV-----ENHMPEVIIVDE--IGTEAEAHA---CRSIAER-GVMLIGTAH---GEWLENIIKN 243 (254)
Q Consensus 188 ~~~~~l~~a-----l~~~P~viilDE--p~~~ld~~~---~~~~~~~-G~~vi~t~H---~~~~~~~~~~ 243 (254)
+|+++++++ +..+|++||+|| |++++|... +.++.+. +.++|+++| +.++.+.+.+
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~ 151 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRR 151 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHT
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHh
Confidence 999999996 999999999999 999998766 4443333 556788875 6566665543
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.69 E-value=1.1e-18 Score=145.30 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=73.0
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEE--E-cC----CCccccCCCCCcccc-cc-------ccc----
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVI--V-DT----SNEIGGDGDIPHSAI-GT-------ARR---- 179 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~--~-~~----~~ei~~~~~~~~~~~-~~-------~~~---- 179 (254)
+++|++++|+||||||||||+++|+|+ +|+.|. |.. + .. ...+.+..+.+..++ .. ...
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~-I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~ 96 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ-VSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEP 96 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS-CSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe-eeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccH
Confidence 588999999999999999999999999 876443 211 1 11 111222111110111 00 000
Q ss_pred ------cCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHH---hCCceEEEEEchhhHHHH
Q 025371 180 ------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEWLENI 240 (254)
Q Consensus 180 ------~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~---~~G~~vi~t~H~~~~~~~ 240 (254)
... ..||+||+++++||..+|++||+|||+++ ....+.++. +.|.++| ++|+.+..+.
T Consensus 97 ~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 97 EVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp THHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred HHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 001 33999999999999999999999999998 444444433 3588999 9999776554
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.65 E-value=8.7e-17 Score=146.16 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=51.3
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChh
Q 025371 183 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~~~P--~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+|+|++|++++++++..+| ++||+|||++++|... +.++. .|+++|++||+.++.+. ++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~-~d~i 365 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAAR-AHHH 365 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTT-CSEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhh-cCeE
Confidence 6999999999999999999 9999999999999876 23333 58999999999887764 4443
No 71
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=6.2e-16 Score=152.54 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred cCCCChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
...+||||+||++||++|..+| +++|||||++++|+.. +.++.+.|.|+|+++|+.+.... ++.++
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIi 878 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHII 878 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEE
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 3457999999999999998765 7999999999999876 44555679999999999887765 45544
No 72
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-16 Score=147.97 Aligned_cols=123 Identities=15% Similarity=0.023 Sum_probs=83.7
Q ss_pred hhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCe-EEEEcCC-CccccCC------------C-----CCc---
Q 025371 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKR-VVIVDTS-NEIGGDG------------D-----IPH--- 171 (254)
Q Consensus 114 ~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~-i~~~~~~-~ei~~~~------------~-----~~~--- 171 (254)
.+++.+++|++++|+||||||||||+|+|+|++.++.+.. +.+-.+. ..+.+.. . +..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~ 209 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLT 209 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccc
Confidence 4667789999999999999999999999999998764403 3332211 1111100 0 000
Q ss_pred ------cccc-cc--------cccCCCChhHHHHHHHHHH--HccCCCE----EEEeC-CCchHHHH--HHHHHH-hCCc
Q 025371 172 ------SAIG-TA--------RRMQVPEPSLQHKVMIEAV--ENHMPEV----IIVDE-IGTEAEAH--ACRSIA-ERGV 226 (254)
Q Consensus 172 ------~~~~-~~--------~~~~~~s~g~~~~~~l~~a--l~~~P~v----iilDE-p~~~ld~~--~~~~~~-~~G~ 226 (254)
.... .. .....+|+|++||++++++ |..+|++ ||+|| |++++|.. .+.++. +.|.
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~ 289 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNV 289 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTC
T ss_pred cCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCC
Confidence 0000 00 0112358999999999999 9999999 99999 99988864 334433 3488
Q ss_pred eEEEEEchhh
Q 025371 227 MLIGTAHGEW 236 (254)
Q Consensus 227 ~vi~t~H~~~ 236 (254)
++++++|+.+
T Consensus 290 tviiVth~~~ 299 (460)
T 2npi_A 290 NIMLVLCSET 299 (460)
T ss_dssp CEEEEECCSS
T ss_pred CEEEEEccCc
Confidence 9999999866
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.64 E-value=1.3e-16 Score=156.20 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=55.1
Q ss_pred cCCCChhHHHHHHHHHHHccC---CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 180 MQVPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~~~---P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
...+|+|++||+.||++|..+ |+++|||||++++|..+ +.++.+.|.+||+++|+.+... +++.++.
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~-~aDrii~ 804 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVA-ASDWVLD 804 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEE
Confidence 345799999999999999996 79999999999998876 4445567999999999988774 5555543
No 74
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.64 E-value=3e-16 Score=141.01 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=51.7
Q ss_pred CCCChhHHHHHHHHHHHc------cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 181 QVPEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~------~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
..+|+|++||+++++|+. .+|++||+|||++++|+.. +.++.+.|.++|+++|+.+....++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 357999999999999998 6999999999999999876 3334456899999999988755443
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.60 E-value=1.6e-15 Score=149.30 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=54.0
Q ss_pred CCCChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhhh
Q 025371 181 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPILS 247 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~~ 247 (254)
..+|+|++||+++|++|..+| +++|||||++++|..+ +.++.+.|.|||+++|+.+... +++.++.
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIiv 919 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIID 919 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEE
Confidence 357999999999999999865 9999999999999876 4445567999999999988765 4555443
No 76
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.60 E-value=2.1e-15 Score=148.83 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=53.6
Q ss_pred CCCChhHHHHHHHHHHHccCC---CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 181 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~~~P---~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
..+|+|++||+++|++|..+| +++|||||++++|..+ +.++.+.|.|||+++|+.+... +++.++
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIi 936 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWII 936 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEE
Confidence 457999999999999999865 9999999999999876 3445567999999999988765 455544
No 77
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.52 E-value=1e-14 Score=122.80 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=67.2
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHH--hccCcCCCCeEEEEcCCCc---c----ccCCCCCcc-------ccccc---
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIA--RVLSDEFQKRVVIVDTSNE---I----GGDGDIPHS-------AIGTA--- 177 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~--g~~~~~~~~~i~~~~~~~e---i----~~~~~~~~~-------~~~~~--- 177 (254)
.-+++|++++|+||||||||||+++|+ ++..+. ..++++..... + ...+..++. .+...
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 358999999999999999999999999 653442 33333322110 0 000000100 00000
Q ss_pred -------c---ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH-----HH------H-HHHHHhCCceEEEEEchh
Q 025371 178 -------R---RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-----AH------A-CRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 178 -------~---~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld-----~~------~-~~~~~~~G~~vi~t~H~~ 235 (254)
. .....+..+.........-..+|+++++|||++.+| .. . +..+.+.|.|+|+++|..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred ccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 0 000011222233333444458999999999999886 21 1 344556799999999996
Q ss_pred hHH
Q 025371 236 WLE 238 (254)
Q Consensus 236 ~~~ 238 (254)
+..
T Consensus 183 ~~~ 185 (251)
T 2ehv_A 183 DPQ 185 (251)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 78
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.50 E-value=2.2e-14 Score=142.04 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=80.1
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHH--------HhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREI--------ARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 182 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l--------~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~ 182 (254)
.++++++.+.+|++++|+||||||||||||.+ .|..-|.....+ .....+....... ......
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~---~~~d~i~~~ig~~------d~l~~~ 721 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV---SIVDCILARVGAG------DSQLKG 721 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE---ECCSEEEEECC--------------
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc---hHHHHHHHhcCch------hhHHHh
Confidence 36677777888999999999999999999999 554444211111 1111110000000 011223
Q ss_pred CChhHHHHHHHHHHH--ccCCCEEEEeCCCchHHHHH--------HHHHHh-CCceEEEEEchhhHHHHhCC
Q 025371 183 PEPSLQHKVMIEAVE--NHMPEVIIVDEIGTEAEAHA--------CRSIAE-RGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 183 ~s~g~~~~~~l~~al--~~~P~viilDEp~~~ld~~~--------~~~~~~-~G~~vi~t~H~~~~~~~~~~ 243 (254)
.|.++.++..+++++ ..+|+++|+|||++++|+.. +..+.+ .|.++|++||..++.+..++
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~ 793 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQ 793 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGT
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcc
Confidence 567777777777777 78999999999999988753 233444 48999999999887765443
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.50 E-value=5.4e-14 Score=124.04 Aligned_cols=61 Identities=8% Similarity=0.081 Sum_probs=48.9
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhC
Q 025371 181 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 181 ~~~s~g~~~~~~l~~al~----~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
..+|+|++|++++++++. .+|+++|+|||++++|+.. +.++ ..|.++|+++|..++.+.++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~~~~~~d 289 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKIVMEAAD 289 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTTGGGGCS
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhhCc
Confidence 357999999999999997 5789999999999999875 2232 34789999999976555443
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.49 E-value=8.5e-16 Score=139.83 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=80.5
Q ss_pred chhhhhccccCCc--------------------EEEEECCCCCCHHHHHHHHHhccCcCCCCe------E---EEEcCCC
Q 025371 111 HIDMVYDLLHYGK--------------------SILFVGRPGVGKTTVMREIARVLSDEFQKR------V---VIVDTSN 161 (254)
Q Consensus 111 ~~~~l~~~i~~g~--------------------~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~------i---~~~~~~~ 161 (254)
.++.+++.+++|+ +++|+||||||||||+|+|+|+++++.+.- + .++.+..
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~ 117 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP 117 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc
Confidence 3667777788888 999999999999999999999998764321 0 0111111
Q ss_pred c---cccC--CCC--Ccccc---------ccccccCCCChh--HHHHHHHHHHHcc----------CCCEEEEeCCCchH
Q 025371 162 E---IGGD--GDI--PHSAI---------GTARRMQVPEPS--LQHKVMIEAVENH----------MPEVIIVDEIGTEA 213 (254)
Q Consensus 162 e---i~~~--~~~--~~~~~---------~~~~~~~~~s~g--~~~~~~l~~al~~----------~P~viilDEp~~~l 213 (254)
. +... ..+ +.... ........+|+| ++|++.+++++.. +||++++|||++++
T Consensus 118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgL 197 (413)
T 1tq4_A 118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEP 197 (413)
T ss_dssp SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCC
T ss_pred ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccC
Confidence 0 0000 000 00000 000011125777 9999999999999 99999999999998
Q ss_pred HHHH-------HHHHH-----hCC----ceEEEEEchhh
Q 025371 214 EAHA-------CRSIA-----ERG----VMLIGTAHGEW 236 (254)
Q Consensus 214 d~~~-------~~~~~-----~~G----~~vi~t~H~~~ 236 (254)
|+.. +.++. +.| .++++++|..+
T Consensus 198 D~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~ 236 (413)
T 1tq4_A 198 QTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVC 236 (413)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCC
Confidence 8643 33332 333 46788998644
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.49 E-value=3e-14 Score=133.61 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=83.6
Q ss_pred hccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE-cC-CCc-ccc---CCCCCcc---ccc----cccccCC
Q 025371 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV-DT-SNE-IGG---DGDIPHS---AIG----TARRMQV 182 (254)
Q Consensus 116 ~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~-~~-~~e-i~~---~~~~~~~---~~~----~~~~~~~ 182 (254)
..-+.+|++++|+|+||||||||++.+++...+. +++++++ .+ +.. +.. ....... ..+ .......
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEecccc
Confidence 4458899999999999999999999999998875 6555443 22 211 000 0000000 000 0112234
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH-----H-------HHHHHhCCceEEEEEchh
Q 025371 183 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-----A-------CRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~-----~-------~~~~~~~G~~vi~t~H~~ 235 (254)
+|+|++|++++++++..+|++||+| |++++|.. . +..+++.|.++|+++|..
T Consensus 354 LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 6999999999999999999999999 99998876 3 344557799999999987
No 82
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.47 E-value=4.6e-14 Score=139.43 Aligned_cols=126 Identities=11% Similarity=0.054 Sum_probs=79.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC------CCCeEEEEcCCCccccCCCCCccccccccccCCCC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE 184 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~------~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s 184 (254)
.++++++.+.+|++++|+||||||||||||.++++.-.. .... ..+.....+........ .. ......+|
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~-~~i~~~d~i~~~ig~~d-~l--~~~~stfs 737 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE-ATIGIVDGIFTRMGAAD-NI--YKGRSTFM 737 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSE-EEEECCSEEEEEC-------------CCHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchh-hhhhHHHHHHHhCChHH-HH--HHhHHHhh
Confidence 466777778899999999999999999999998543210 0111 11111111100000000 00 11223446
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH--------HHHHHh-CCceEEEEEchhhHHHHh
Q 025371 185 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAE-RGVMLIGTAHGEWLENII 241 (254)
Q Consensus 185 ~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--------~~~~~~-~G~~vi~t~H~~~~~~~~ 241 (254)
++++++..++++ ..+|+++|+|||++++|+.. +..+.+ .|.++|++||..++.+..
T Consensus 738 ~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~ 802 (918)
T 3thx_B 738 EELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 802 (918)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHH
T ss_pred HHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHH
Confidence 788888877777 78999999999999999754 223333 589999999997766543
No 83
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.46 E-value=6.2e-14 Score=136.39 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=77.8
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-cCCCCeEEEEcC-CCccccCCCC-CccccccccccCCCChhHH
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVDT-SNEIGGDGDI-PHSAIGTARRMQVPEPSLQ 188 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-~~~~~~i~~~~~-~~ei~~~~~~-~~~~~~~~~~~~~~s~g~~ 188 (254)
++++++. |++++|+||||||||||||+|+|+.. +..|. ++ +. ...+++...+ +..... .....-.|.++.
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~-~v--pa~~~~i~~v~~i~~~~~~~-d~l~~g~S~~~~ 641 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS-FV--PAEEAHLPLFDGIYTRIGAS-DDLAGGKSTFMV 641 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC-CB--SSSEEEECCCSEEEEECCC-------CCSHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc-ee--ehhccceeeHHHhhccCCHH-HHHHhcccHHHH
Confidence 4444444 99999999999999999999999864 33232 11 11 1111111000 000000 001122477888
Q ss_pred HHHHHHHHH--ccCCCEEEEeCC---CchHHHHHH-----HHHHhCCceEEEEEchhhHHH
Q 025371 189 HKVMIEAVE--NHMPEVIIVDEI---GTEAEAHAC-----RSIAERGVMLIGTAHGEWLEN 239 (254)
Q Consensus 189 ~~~~l~~al--~~~P~viilDEp---~~~ld~~~~-----~~~~~~G~~vi~t~H~~~~~~ 239 (254)
++..+++++ ..+|+++|+||| ++++|..+. ..+.+.|.++|++||..++.+
T Consensus 642 e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 642 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 889999999 889999999999 888886542 223456899999999977654
No 84
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.46 E-value=1.5e-13 Score=114.23 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=69.1
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-----CCCeEEEEcCCCccc-----cC----CCCCccccccccccCC
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIG-----GD----GDIPHSAIGTARRMQV 182 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-----~~~~i~~~~~~~ei~-----~~----~~~~~~~~~~~~~~~~ 182 (254)
.-+++|++++|+||||||||||++.|++.+.+. ....+++++...... .. ...++...........
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 458899999999999999999999999965542 134456655432110 00 0011100000000111
Q ss_pred CChhHHHH-HHHHHHH-------ccCCCEEEEeCCCchHHHH----------------H---HHHHH-hCCceEEEEEc-
Q 025371 183 PEPSLQHK-VMIEAVE-------NHMPEVIIVDEIGTEAEAH----------------A---CRSIA-ERGVMLIGTAH- 233 (254)
Q Consensus 183 ~s~g~~~~-~~l~~al-------~~~P~viilDEp~~~ld~~----------------~---~~~~~-~~G~~vi~t~H- 233 (254)
.+...+.. ......+ ..+|++|++|||++.+|.. . +.++. +.|.++|+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 22222211 1112222 4599999999999976652 1 33333 45999999999
Q ss_pred ---hhhHHHHhCChh
Q 025371 234 ---GEWLENIIKNPI 245 (254)
Q Consensus 234 ---~~~~~~~~~~~~ 245 (254)
.....+.+.+.+
T Consensus 180 ~~~~g~~~~~~~d~~ 194 (231)
T 4a74_A 180 QANGGHILAHSATLR 194 (231)
T ss_dssp C---------CCSEE
T ss_pred ccCcchhhHhhceEE
Confidence 444455544443
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.45 E-value=2.8e-13 Score=117.72 Aligned_cols=124 Identities=20% Similarity=0.218 Sum_probs=77.1
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC---ccc----c-CCCCCcc----------
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN---EIG----G-DGDIPHS---------- 172 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~---ei~----~-~~~~~~~---------- 172 (254)
.++.+..-+++|++++|+||||||||||++.|++.+.+..+..+.++.... ++. . ....+..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~ 103 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREII 103 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCC
Confidence 477777779999999999999999999999999999876554665553211 000 0 0001000
Q ss_pred ----------------ccccccccCCCChhH-HHHHHHHHHHccCCCEEEEeCCCc---h---HHH-HH-------HHHH
Q 025371 173 ----------------AIGTARRMQVPEPSL-QHKVMIEAVENHMPEVIIVDEIGT---E---AEA-HA-------CRSI 221 (254)
Q Consensus 173 ----------------~~~~~~~~~~~s~g~-~~~~~l~~al~~~P~viilDEp~~---~---ld~-~~-------~~~~ 221 (254)
.+.........+.++ ++++. ++++..+|++||+|||+. + +|. .. +.++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~l 182 (296)
T 1cr0_A 104 ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGF 182 (296)
T ss_dssp HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 000000001234455 44444 778899999999999998 3 232 21 3344
Q ss_pred H-hCCceEEEEEchh
Q 025371 222 A-ERGVMLIGTAHGE 235 (254)
Q Consensus 222 ~-~~G~~vi~t~H~~ 235 (254)
+ +.|+++|+++|..
T Consensus 183 a~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 183 AKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHCCEEEEEEECC
T ss_pred HHHhCCeEEEEEecC
Confidence 3 3599999999995
No 86
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.45 E-value=6.3e-14 Score=122.74 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=78.4
Q ss_pred hhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC----------------ccccCCCCCc-c----
Q 025371 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------------EIGGDGDIPH-S---- 172 (254)
Q Consensus 114 ~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~----------------ei~~~~~~~~-~---- 172 (254)
.+++.+.+|++++|+||||||||||++.|+|++.++ ++++.+..... .+.+....+. .
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 355557889999999999999999999999999876 55565543221 0111111000 0
Q ss_pred ----ccc--c--------ccccCCC-------ChhHHHHHHHHHHHccCCC--EEEEeCCCchHHHHH-HHHHH-hCCce
Q 025371 173 ----AIG--T--------ARRMQVP-------EPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-CRSIA-ERGVM 227 (254)
Q Consensus 173 ----~~~--~--------~~~~~~~-------s~g~~~~~~l~~al~~~P~--viilDEp~~~ld~~~-~~~~~-~~G~~ 227 (254)
++. . ....... ..-.+|+.++++++..+|+ ++++| |++++|+.. +.++. ..|.+
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t 249 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGIT 249 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCC
Confidence 000 0 0000100 0011789999999999999 99999 999999876 44444 35899
Q ss_pred EEEEEch
Q 025371 228 LIGTAHG 234 (254)
Q Consensus 228 vi~t~H~ 234 (254)
++++||.
T Consensus 250 ~iiiThl 256 (302)
T 3b9q_A 250 GLILTKL 256 (302)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999993
No 87
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.45 E-value=8.4e-14 Score=123.70 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=49.9
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCC
Q 025371 181 QVPEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 181 ~~~s~g~~~------~~~l~~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
..+|+|++| ++++++++..+|++||+|||++++|+.. +.++...|.++|+++|+.++.+.+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 347999999 5677788888999999999999999875 33334568899999999877665544
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.42 E-value=1.9e-13 Score=136.69 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=82.0
Q ss_pred chhhhhccccC-------CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC-ccccCCCCCcccccc----cc
Q 025371 111 HIDMVYDLLHY-------GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EIGGDGDIPHSAIGT----AR 178 (254)
Q Consensus 111 ~~~~l~~~i~~-------g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~-ei~~~~~~~~~~~~~----~~ 178 (254)
.++++++.+.+ |++++|+||||||||||||.+ |++.+.. ....++++.. .+.....+. ..++. ..
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a-qiG~~Vpq~~~~l~v~d~I~-~rig~~d~~~~ 847 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA-QMGCYVPAEVCRLTPIDRVF-TRLGASDRIMS 847 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH-TTTCCEESSEEEECCCSBEE-EECC-------
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh-heeEEeccCcCCCCHHHHHH-HHcCCHHHHhh
Confidence 46777777766 899999999999999999999 8875421 0001222211 111000000 00000 00
Q ss_pred ccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH--------HHHHHhC-CceEEEEEchhhHHHHhCChh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAER-GVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~--------~~~~~~~-G~~vi~t~H~~~~~~~~~~~~ 245 (254)
....++.+++ ++++++++..+|+++|+|||++++|... +..+.+. |.++|++||..++...+.+..
T Consensus 848 ~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 848 GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp --CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS
T ss_pred chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc
Confidence 1112234444 4788899999999999999988876543 3445555 899999999988888766543
No 89
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.42 E-value=3.5e-13 Score=120.55 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=78.9
Q ss_pred hhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC----------------ccccCCCCCc-c----
Q 025371 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----------------EIGGDGDIPH-S---- 172 (254)
Q Consensus 114 ~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~----------------ei~~~~~~~~-~---- 172 (254)
.+++.+.+|++++|+||||||||||++.|+|++.++ ++++.+..... .+.+....+. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 355567889999999999999999999999999876 55565543221 0111111011 0
Q ss_pred ----ccc----------cccccCCC-------ChhHHHHHHHHHHHccCCC--EEEEeCCCchHHHHH-HHHHHh-CCce
Q 025371 173 ----AIG----------TARRMQVP-------EPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-CRSIAE-RGVM 227 (254)
Q Consensus 173 ----~~~----------~~~~~~~~-------s~g~~~~~~l~~al~~~P~--viilDEp~~~ld~~~-~~~~~~-~G~~ 227 (254)
++. ........ ..-.+|+.++++++..+|+ +|++| |++++|+.. +..+.+ .|.+
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t 306 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGIT 306 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCe
Confidence 000 00001110 0112789999999999999 99999 999999876 344443 5899
Q ss_pred EEEEEch
Q 025371 228 LIGTAHG 234 (254)
Q Consensus 228 vi~t~H~ 234 (254)
+|++||.
T Consensus 307 ~iiiThl 313 (359)
T 2og2_A 307 GLILTKL 313 (359)
T ss_dssp EEEEESC
T ss_pred EEEEecC
Confidence 9999993
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.41 E-value=1.4e-13 Score=114.29 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=75.2
Q ss_pred hhhhhc-cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc---cc----cCCCCCcc----cccccc-
Q 025371 112 IDMVYD-LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG----GDGDIPHS----AIGTAR- 178 (254)
Q Consensus 112 ~~~l~~-~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e---i~----~~~~~~~~----~~~~~~- 178 (254)
++.+.. -+.+|++++|+||||||||||++.|++...+. +.++.++..... +. .....++. .+....
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA 90 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEEC
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEec
Confidence 455543 58899999999999999999999999887655 455665543211 00 00000000 000000
Q ss_pred ---------ccCCCChhHHHHHHHHHHHccCCC--EEEEeCCCchH--HHH-------HHHHHH-hCCceEEEEEchh
Q 025371 179 ---------RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEA--EAH-------ACRSIA-ERGVMLIGTAHGE 235 (254)
Q Consensus 179 ---------~~~~~s~g~~~~~~l~~al~~~P~--viilDEp~~~l--d~~-------~~~~~~-~~G~~vi~t~H~~ 235 (254)
.....+.++.++...+.+...+|+ +|++|||++.+ |.. .+.+++ +.|.++|+++|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 001125566666666666678999 99999999654 432 134443 4589999999997
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.33 E-value=1.2e-14 Score=120.03 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.1
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+++|++++|+||||||||||+++|+|+++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999999999985
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.32 E-value=4.4e-14 Score=124.25 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=67.9
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC-CeEEEEcCCCcccc---------CC--CCCccc----c-------c
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGG---------DG--DIPHSA----I-------G 175 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~-~~i~~~~~~~ei~~---------~~--~~~~~~----~-------~ 175 (254)
+++|++++|+||||||||||+++|+|++.+..+ .++.++.+...+.. .. ..+... . .
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 678999999999999999999999999987544 35666654322110 00 011100 0 0
Q ss_pred --c-ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHH
Q 025371 176 --T-ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 214 (254)
Q Consensus 176 --~-~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld 214 (254)
. ......+|+|++|++.+++++..+|++||+|||+..+|
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCC
Confidence 0 02233469999999999999999999999999998764
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.31 E-value=2.9e-12 Score=100.75 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
+|+.++|+||||||||||++++++.+.+. +.++++++...-.. . ++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~~~~~--------------~----------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAASMPL--------------T----------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETTTSCC--------------C----------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHHHhhH--------------H----------------HHHhC
Confidence 78999999999999999999999998763 55556554432110 0 23468
Q ss_pred CCEEEEeCCCchHH--HHH----HHHHHhCCce-EEEEEch
Q 025371 201 PEVIIVDEIGTEAE--AHA----CRSIAERGVM-LIGTAHG 234 (254)
Q Consensus 201 P~viilDEp~~~ld--~~~----~~~~~~~G~~-vi~t~H~ 234 (254)
|++|++|||....+ ... +..+.+.|.+ +|+|+|.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 99999999987322 122 3334566787 8888884
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.29 E-value=4e-13 Score=108.20 Aligned_cols=101 Identities=21% Similarity=0.221 Sum_probs=60.5
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+|+.++|+||||||||||+++|++.+.+..+..+.++.....+. .+. ... +.+... .. ....
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--------~~~--~~~---~~~~~~-~~--~~~~ 98 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--------RLK--HLM---DEGKDT-KF--LKTV 98 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--------HHH--HHH---HHTCCS-HH--HHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHH--HHh---cCchHH-HH--HHHh
Confidence 4678999999999999999999999998754454443332111100 000 000 000000 11 1223
Q ss_pred cCCCEEEEeCCCc-hHHHHH-------HHHHHhCCceEEEEEchh
Q 025371 199 HMPEVIIVDEIGT-EAEAHA-------CRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 199 ~~P~viilDEp~~-~ld~~~-------~~~~~~~G~~vi~t~H~~ 235 (254)
.+|++|++|||+. ++|... +....+.|.++|+|+|..
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4899999999984 455443 223345788999999864
No 95
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.29 E-value=7.2e-13 Score=129.59 Aligned_cols=125 Identities=16% Similarity=0.115 Sum_probs=69.7
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-CCCeEEEEcCC-CccccCCCC-Ccccccc--ccccCCCCh
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVDTS-NEIGGDGDI-PHSAIGT--ARRMQVPEP 185 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-~~~~i~~~~~~-~ei~~~~~~-~~~~~~~--~~~~~~~s~ 185 (254)
.++++++. ++|++++|+||||||||||||+|+|+.... .+. +++.. ..+.....+ ....... .......+.
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~ 672 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS---YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMV 672 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEECCCCEEEEEEC-----------CHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc---ccchhcccceeHHHHHhhCCHHHHHHhhhhhhhH
Confidence 35566666 789999999999999999999999975321 111 01110 011110000 0000000 001112234
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCchHH---HHH-----HHHHHh-CCceEEEEEchhhHHHH
Q 025371 186 SLQHKVMIEAVENHMPEVIIVDEIGTEAE---AHA-----CRSIAE-RGVMLIGTAHGEWLENI 240 (254)
Q Consensus 186 g~~~~~~l~~al~~~P~viilDEp~~~ld---~~~-----~~~~~~-~G~~vi~t~H~~~~~~~ 240 (254)
+++ +.........+|+++|+|||+++.| ... +..+.+ .|.++|++||..++...
T Consensus 673 e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l 735 (800)
T 1wb9_A 673 EMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQL 735 (800)
T ss_dssp HHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred HHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence 443 3333344578999999999955433 322 334455 48999999999876653
No 96
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.29 E-value=5.8e-13 Score=114.79 Aligned_cols=107 Identities=12% Similarity=0.136 Sum_probs=62.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCC---------------eEEEEcCCCccc----------cCCCCCccc-ccc-
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSNEIG----------GDGDIPHSA-IGT- 176 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~---------------~i~~~~~~~ei~----------~~~~~~~~~-~~~- 176 (254)
+++|+||||||||||+|+|+|+..++.|. .+.++.+...+. +........ +..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 58999999999999999999999876332 111111111000 000000000 000
Q ss_pred ---------ccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHH---HHHHHHhCCceEEEEEch
Q 025371 177 ---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSIAERGVMLIGTAHG 234 (254)
Q Consensus 177 ---------~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~---~~~~~~~~G~~vi~t~H~ 234 (254)
......+|+|++||+.++++++. ++++|||+.+++.. .+..+.+. .++|.+.|-
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETT
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEec
Confidence 01122359999999999988765 99999997765554 45566665 777776664
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.29 E-value=7.5e-12 Score=103.20 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=70.2
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC--------CCCCccccccccccCCCChhHH-
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVPEPSLQ- 188 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~--------~~~~~~~~~~~~~~~~~s~g~~- 188 (254)
-+++|++++|+||||||||||++.+++ .. +..+++++....+... .......+.....+...+.+++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 578999999999999999999999999 33 6677777543311100 0000000000001112233433
Q ss_pred -HHHHHHHHHccC-CCEEEEeCCCchHHH--------HH-------HHHHH-hCCceEEEEEchhh
Q 025371 189 -HKVMIEAVENHM-PEVIIVDEIGTEAEA--------HA-------CRSIA-ERGVMLIGTAHGEW 236 (254)
Q Consensus 189 -~~~~l~~al~~~-P~viilDEp~~~ld~--------~~-------~~~~~-~~G~~vi~t~H~~~ 236 (254)
+....++++..+ |++||+|||++.++. .. +.+++ +.|.++|+++|...
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 345555667665 999999999987543 11 33443 34899999999754
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.27 E-value=1.1e-11 Score=110.61 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=77.0
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHHHHHhcc--CcCC---CCeEEEEcCCCcc-----ccC---CCCCcccccc-ccc-
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVL--SDEF---QKRVVIVDTSNEI-----GGD---GDIPHSAIGT-ARR- 179 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~~---~~~i~~~~~~~ei-----~~~---~~~~~~~~~~-~~~- 179 (254)
+..-+++|++++|+||||||||||++.+++.. +++. ++++++++....+ ... ..+....+.. ..-
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~ 203 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVA 203 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEE
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEE
Confidence 35568999999999999999999999999988 5544 2566666543221 000 0000000000 000
Q ss_pred cCCCChhHHHHHHHHHHHc-------cCCCEEEEeCCCchHHHH---------------H----HHHHH-hCCceEEEEE
Q 025371 180 MQVPEPSLQHKVMIEAVEN-------HMPEVIIVDEIGTEAEAH---------------A----CRSIA-ERGVMLIGTA 232 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~-------~~P~viilDEp~~~ld~~---------------~----~~~~~-~~G~~vi~t~ 232 (254)
....+.++.+....++.+. .+|++||+|||++.+|.. . +..++ +.|.++|+|+
T Consensus 204 ~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 204 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 0112455666666666666 689999999999988763 0 22222 3589999999
Q ss_pred chhh
Q 025371 233 HGEW 236 (254)
Q Consensus 233 H~~~ 236 (254)
|...
T Consensus 284 h~~~ 287 (349)
T 1pzn_A 284 QVQA 287 (349)
T ss_dssp ECC-
T ss_pred cccc
Confidence 9754
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.22 E-value=2e-11 Score=105.13 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=70.9
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcC---------CCCeEEEEcCCCcccc--------CCCCCc-------cc
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGG--------DGDIPH-------SA 173 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~---------~~~~i~~~~~~~ei~~--------~~~~~~-------~~ 173 (254)
-+.+|++++|+||||||||||++.+++.+... .+..+.++........ ...... ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 47889999999999999999999999866531 1244555432211100 000100 00
Q ss_pred cc----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc--hHHH------HH----HHHHH-hCCceEEEEEchhh
Q 025371 174 IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAEA------HA----CRSIA-ERGVMLIGTAHGEW 236 (254)
Q Consensus 174 ~~----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~--~ld~------~~----~~~~~-~~G~~vi~t~H~~~ 236 (254)
+. .......+|+|+.+++ +++..+|++||+|||++ ++|. .. +..++ +.|+++|+++|...
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred eEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 00 0122345677775543 56667999999999998 5443 11 44443 56999999999866
Q ss_pred HH
Q 025371 237 LE 238 (254)
Q Consensus 237 ~~ 238 (254)
..
T Consensus 183 ~~ 184 (279)
T 1nlf_A 183 GA 184 (279)
T ss_dssp --
T ss_pred cc
Confidence 44
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.22 E-value=5e-13 Score=109.32 Aligned_cols=26 Identities=38% Similarity=0.801 Sum_probs=24.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
|+.++|+||||||||||++.|+|++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999999999986
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.22 E-value=1.5e-13 Score=114.62 Aligned_cols=121 Identities=11% Similarity=-0.033 Sum_probs=67.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC-----------CccccCCC----CC-----
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----------NEIGGDGD----IP----- 170 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~-----------~ei~~~~~----~~----- 170 (254)
.++++++.+++|++++|+||||||||||+++|+|++ | |. +.+ ... ..+.+... ++
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~-i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NY-FYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TT-EEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--Cc-EEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 477888999999999999999999999999999988 4 32 222 110 00100000 00
Q ss_pred ----------ccccccc--------ccc------CCCChhHHHHHHH-----HHHHccCCCEEEEeCCCchHHHHH----
Q 025371 171 ----------HSAIGTA--------RRM------QVPEPSLQHKVMI-----EAVENHMPEVIIVDEIGTEAEAHA---- 217 (254)
Q Consensus 171 ----------~~~~~~~--------~~~------~~~s~g~~~~~~l-----~~al~~~P~viilDEp~~~ld~~~---- 217 (254)
....+.. ... ..+|+|++||.++ ++++...|+++++|||++.+|...
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i 166 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQI 166 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHH
Confidence 0000000 000 1238999999999 778888899999999987665321
Q ss_pred ---HHHHHh-------CCceEEEEEchhh
Q 025371 218 ---CRSIAE-------RGVMLIGTAHGEW 236 (254)
Q Consensus 218 ---~~~~~~-------~G~~vi~t~H~~~ 236 (254)
+..+.. .....|+++|+.+
T Consensus 167 ~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ 195 (218)
T 1z6g_A 167 QKRMEQLNIELHEANLLNFNLSIINDDLT 195 (218)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEECSSHH
T ss_pred HHHHHHHHHHHHhhcccCCCEEEECCCHH
Confidence 222211 4567788888744
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.21 E-value=2.4e-11 Score=106.38 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc-cc------------cCCCCCccc-----------cc-
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IG------------GDGDIPHSA-----------IG- 175 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e-i~------------~~~~~~~~~-----------~~- 175 (254)
+|++++|+||||||||||++.|++++.++ ++++.+...... .. ....+++.. +.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999987 556665543210 00 000111100 00
Q ss_pred -c--------ccccCC-------CChhHHHHHHHHHHHccCCC--EEEEeCCCchHHHHHHHHHHh-CCceEEEEEchhh
Q 025371 176 -T--------ARRMQV-------PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRSIAE-RGVMLIGTAHGEW 236 (254)
Q Consensus 176 -~--------~~~~~~-------~s~g~~~~~~l~~al~~~P~--viilDEp~~~ld~~~~~~~~~-~G~~vi~t~H~~~ 236 (254)
. ...... .+...+|+.++++++..+|+ ++.+|..+.......+..+.+ .|.+++++||...
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 0 000000 13345788999999999999 778895555433334555554 4899999999754
No 103
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.21 E-value=1.6e-11 Score=115.07 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=75.9
Q ss_pred cchhhhhc-cccCCcEEEEECCCCCCHHHHHHH--HHhccCcCCCCeEEEEcCCC----------ccccCCCCCccc---
Q 025371 110 GHIDMVYD-LLHYGKSILFVGRPGVGKTTVMRE--IARVLSDEFQKRVVIVDTSN----------EIGGDGDIPHSA--- 173 (254)
Q Consensus 110 ~~~~~l~~-~i~~g~~~~i~G~~GsGKTTLl~~--l~g~~~~~~~~~i~~~~~~~----------ei~~~~~~~~~~--- 173 (254)
..++.+++ .+++|++++|+||||||||||++. ++|++++.. +. ++++... .+++ .++..
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~-g~-i~v~g~~~~~~~~~~~~~~g~---~~q~~~~~ 100 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE-PG-VFVTFEETPQDIIKNARSFGW---DLAKLVDE 100 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC-CE-EEEESSSCHHHHHHHHGGGTC---CHHHHHHT
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC-CE-EEEEEeCCHHHHHHHHHHcCC---ChHHhhcc
Confidence 35888888 899999999999999999999999 689998752 33 3332211 1111 11110
Q ss_pred --ccccc------ccCCCC-hh-HHHHHHHHHHHc-cCCCEEEEeCCCch-----HHHHH-------HHHHHhCCceEEE
Q 025371 174 --IGTAR------RMQVPE-PS-LQHKVMIEAVEN-HMPEVIIVDEIGTE-----AEAHA-------CRSIAERGVMLIG 230 (254)
Q Consensus 174 --~~~~~------~~~~~s-~g-~~~~~~l~~al~-~~P~viilDEp~~~-----ld~~~-------~~~~~~~G~~vi~ 230 (254)
+.... ....+. -+ ......+...+. .+|+++++|||++. +|... +..+.+.|.|+|+
T Consensus 101 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~ 180 (525)
T 1tf7_A 101 GKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVM 180 (525)
T ss_dssp TSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 10000 001111 11 122333444453 78999999999873 34433 4445567999999
Q ss_pred EEchhhH
Q 025371 231 TAHGEWL 237 (254)
Q Consensus 231 t~H~~~~ 237 (254)
++|..+.
T Consensus 181 itH~~~~ 187 (525)
T 1tf7_A 181 TTERIEE 187 (525)
T ss_dssp EEECSSS
T ss_pred EecCCCC
Confidence 9999664
No 104
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.20 E-value=1.3e-12 Score=110.60 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=71.6
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC----CCCeEEEEcCCCccccC-----------CC--CCccc
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGD-----------GD--IPHSA 173 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~----~~~~i~~~~~~~ei~~~-----------~~--~~~~~ 173 (254)
.++++++.+++|++++|+||||||||||++.|++++... ....+.++++.. +... .. .....
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~ 92 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPD 92 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGG
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcc
Confidence 477888899999999999999999999999999976421 023344554432 1100 00 00000
Q ss_pred -c---------c-----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHHHHHHHhCCceEEEEEch-hhH
Q 025371 174 -I---------G-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHG-EWL 237 (254)
Q Consensus 174 -~---------~-----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~~~~~~~~G~~vi~t~H~-~~~ 237 (254)
. . .......+|+|+++++.+ +++..+|+++|+|||....+.. +.++ .+.++++++|. ..+
T Consensus 93 ~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-l~~~--~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 93 AFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-IRDM--FHLRLFVDTDSDVRL 168 (245)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-HHTT--CSEEEEEECCHHHHH
T ss_pred cccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-HHHh--cCeEEEEECCHHHHH
Confidence 0 0 011223357777777655 4667789999999997654433 2222 47899999997 444
Q ss_pred HHHhC
Q 025371 238 ENIIK 242 (254)
Q Consensus 238 ~~~~~ 242 (254)
...+.
T Consensus 169 ~r~~~ 173 (245)
T 2jeo_A 169 SRRVL 173 (245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34333
No 105
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.16 E-value=2e-12 Score=113.11 Aligned_cols=105 Identities=12% Similarity=0.167 Sum_probs=70.5
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccc---
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIG--- 175 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~--- 175 (254)
+++++|+ ...++.+++.+++|++++|+||||||||||+++|+|++ .|.-+.++.+...+... .+...++.
T Consensus 106 ~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~-ti~~~ni~~~~ 178 (305)
T 2v9p_A 106 NIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLA-SLADTRAALVD 178 (305)
T ss_dssp TCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGG-GGTTCSCEEEE
T ss_pred EEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccc-cHHHHhhccCc
Confidence 4555553 13578888999999999999999999999999999998 14333333443222110 00000000
Q ss_pred -----------c-c---cccCCCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH
Q 025371 176 -----------T-A---RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 217 (254)
Q Consensus 176 -----------~-~---~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~ 217 (254)
. . .....+|+|++|| |||+..+|++|| ++++|+..
T Consensus 179 ~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 179 DATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp EECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred cccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 0 0 0123479999999 999999999999 88888765
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.12 E-value=1.7e-10 Score=96.50 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=63.3
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHh--ccCcC---CCCeEEEEcCCCcccc---------CCCCCccccccccccCC
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGG---------DGDIPHSAIGTARRMQV 182 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g--~~~~~---~~~~i~~~~~~~ei~~---------~~~~~~~~~~~~~~~~~ 182 (254)
.-+++|++++|+||||||||||++.|++ ..++. .+..+++++....+.. ....++...........
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 4478999999999999999999999999 44431 1456666654321100 00001000000000011
Q ss_pred CChhHHHHH---HHHHHHccCCCEEEEeCCCchHHHH-------H------------HHHHH-hCCceEEEEEchhh
Q 025371 183 PEPSLQHKV---MIEAVENHMPEVIIVDEIGTEAEAH-------A------------CRSIA-ERGVMLIGTAHGEW 236 (254)
Q Consensus 183 ~s~g~~~~~---~l~~al~~~P~viilDEp~~~ld~~-------~------------~~~~~-~~G~~vi~t~H~~~ 236 (254)
.+..+.... ....+...+|++|++|||+..++.. . +.+++ +.|.++|+++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 222222111 1122223689999999999865432 1 22222 35999999999754
No 107
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.09 E-value=4.1e-11 Score=94.07 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=52.4
Q ss_pred cccCCCChhHHHHHHHH------HHHccCCCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCCh
Q 025371 178 RRMQVPEPSLQHKVMIE------AVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 178 ~~~~~~s~g~~~~~~l~------~al~~~P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~ 244 (254)
+....+|+|++|+++++ +++..+|+++++|||++++|... +.++.+.|.++|+++|+..+.+ +++.
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~-~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD-AADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGG-GCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHH-hCCE
Confidence 34567899999999876 78889999999999999999876 2233345889999999986554 4444
Q ss_pred h
Q 025371 245 I 245 (254)
Q Consensus 245 ~ 245 (254)
+
T Consensus 132 i 132 (148)
T 1f2t_B 132 V 132 (148)
T ss_dssp E
T ss_pred E
Confidence 3
No 108
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.96 E-value=3.7e-09 Score=88.13 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=26.9
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
-.++|++++|+||||||||||+++|+|+.+|
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3688999999999999999999999999875
No 109
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.94 E-value=1.7e-09 Score=98.03 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=65.3
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHH--HhccCcCC---CCeEEEEcCCCccccC--------CCCCccccccccccCCC
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREI--ARVLSDEF---QKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVP 183 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l--~g~~~~~~---~~~i~~~~~~~ei~~~--------~~~~~~~~~~~~~~~~~ 183 (254)
.-+++|++++|+||||||||||++.+ .+..+++. +..+++++....+... ..+....+.....+...
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 34889999999999999999999954 56665432 3567776543221100 00000000000001111
Q ss_pred ChhHHHHHHHHH----HHccCCCEEEEeCCCchHHHH-------------------HHHHHH-hCCceEEEEEchh
Q 025371 184 EPSLQHKVMIEA----VENHMPEVIIVDEIGTEAEAH-------------------ACRSIA-ERGVMLIGTAHGE 235 (254)
Q Consensus 184 s~g~~~~~~l~~----al~~~P~viilDEp~~~ld~~-------------------~~~~~~-~~G~~vi~t~H~~ 235 (254)
.....+...+.+ +...+|++|++|||++..+.. .+.+++ +.|.++|+++|..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 122222323322 223689999999998754311 133443 4599999999983
No 110
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.87 E-value=1.1e-09 Score=86.75 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=35.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~ 151 (254)
.++.+++.+++|++++|+||||||||||+++|+|++ +..+
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 366788889999999999999999999999999999 6533
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.85 E-value=1.5e-10 Score=103.53 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=34.1
Q ss_pred hhhhhccccC--CcEEEEECCCCCCHHHHHHHHHhccCcCC
Q 025371 112 IDMVYDLLHY--GKSILFVGRPGVGKTTVMREIARVLSDEF 150 (254)
Q Consensus 112 ~~~l~~~i~~--g~~~~i~G~~GsGKTTLl~~l~g~~~~~~ 150 (254)
...+...+.+ |+.++|+||||||||||+++|+|++.++.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3456666888 99999999999999999999999998864
No 112
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.85 E-value=7.5e-09 Score=91.39 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=69.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc--------------cc--cCC----CCCccccc----
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE--------------IG--GDG----DIPHSAIG---- 175 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e--------------i~--~~~----~~~~~~~~---- 175 (254)
.+|++++|+|||||||||+++.|++++.+. ++++.+...... +. +.. ..|.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 578999999999999999999999999887 555655432210 00 000 00000000
Q ss_pred --c--------ccccC---CCChhHHHHHHHHHHHccCCCEEEEeCCCchHHHHH-HHHHH-hCCceEEEEEchh
Q 025371 176 --T--------ARRMQ---VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-CRSIA-ERGVMLIGTAHGE 235 (254)
Q Consensus 176 --~--------~~~~~---~~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~~~-~~~~~-~~G~~vi~t~H~~ 235 (254)
. ..... ....-+.+-..+++++..++.++++|.++.. +... +..+. ..+.++++.||..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~-~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN-AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT-HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH-HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 0 00000 1112234445578888888889999977765 4443 44444 3588899999964
No 113
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.84 E-value=1e-09 Score=96.06 Aligned_cols=89 Identities=26% Similarity=0.311 Sum_probs=59.5
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc-cccCCCCCcc-cccc---ccccCCCChhHHHHH--
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGGDGDIPHS-AIGT---ARRMQVPEPSLQHKV-- 191 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e-i~~~~~~~~~-~~~~---~~~~~~~s~g~~~~~-- 191 (254)
..++++++|+|+|||||||+++.|++.+.+. ++++.+++.... ... ..+. .+.. ...+...++++.+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~a---~eqL~~~~~~~gl~~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAA---IEQLKIWGERVGATVISHSEGADPAAVAF 176 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHH---HHHHHHHHHHHTCEEECCSTTCCHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHHH---HHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence 4568899999999999999999999999875 666766553211 000 0000 0000 011122356666666
Q ss_pred -HHHHHHccCCCEEEEeCCCc
Q 025371 192 -MIEAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 192 -~l~~al~~~P~viilDEp~~ 211 (254)
++++++..+||++|+|||..
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 78888899999999999976
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.82 E-value=1.7e-10 Score=100.78 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=20.2
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhc-cCcC
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARV-LSDE 149 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~-~~~~ 149 (254)
+++.++++.. .++.+++. ++|+|+||+|||||++.|+|. +.+.
T Consensus 3 ~l~~~~~~~~--~l~~~~~~------I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 3 NLPNQVHRKS--VKKGFEFT------LMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp -----------------CEE------EEEEEETTSSHHHHHHHHHC------
T ss_pred CCcceECCEE--EEcCCCEE------EEEECCCCCCHHHHHHHHhCCCccCC
Confidence 5566665433 24444433 499999999999999999987 5544
No 115
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.76 E-value=2.2e-09 Score=87.58 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.1
Q ss_pred EEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 98 VGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 98 ~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++++.. ..++. +.+.+|..++|+|+||||||||++.|+|..
T Consensus 7 ~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 7 QQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ----CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466666642 12333 457889999999999999999999999987
No 116
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.76 E-value=9.3e-09 Score=89.49 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCC-CC----CccccccccccCCCChhHHHHHHHHH
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG-DI----PHSAIGTARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~-~~----~~~~~~~~~~~~~~s~g~~~~~~l~~ 195 (254)
+|++++++|+|||||||+++.|++.+.+. ++++.+++....-.... .. ...++.........+...-++.+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 78899999999999999999999999865 67777766432110000 00 00000000000001222345677888
Q ss_pred HHccCCCEEEEeCC-CchHHHHH
Q 025371 196 VENHMPEVIIVDEI-GTEAEAHA 217 (254)
Q Consensus 196 al~~~P~viilDEp-~~~ld~~~ 217 (254)
+...++|++|+||| +.+.|...
T Consensus 176 ~~~~~~D~viiDtpp~~~~d~~~ 198 (295)
T 1ls1_A 176 ARLEARDLILVDTAGRLQIDEPL 198 (295)
T ss_dssp HHHHTCCEEEEECCCCSSCCHHH
T ss_pred HHhCCCCEEEEeCCCCccccHHH
Confidence 87789999999999 76666544
No 117
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.75 E-value=2.1e-09 Score=102.37 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.++|+||||||||||+++|+|+..|
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 3999999999999999999999866
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=9.8e-10 Score=100.09 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHhccCc
Q 025371 125 ILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 125 ~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
++|+|+||||||||+++|+|...+
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 599999999999999999998763
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=3.4e-08 Score=87.13 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=27.9
Q ss_pred hhhhccc-cCCc--EEEEECCCCCCHHHHHHHHHh-ccCcC
Q 025371 113 DMVYDLL-HYGK--SILFVGRPGVGKTTVMREIAR-VLSDE 149 (254)
Q Consensus 113 ~~l~~~i-~~g~--~~~i~G~~GsGKTTLl~~l~g-~~~~~ 149 (254)
+.+...+ ..+. .++|.||||+||||+++++++ +..+.
T Consensus 24 ~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 24 NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp HHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred HHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3444445 4442 499999999999999999999 66654
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.70 E-value=3e-08 Score=88.27 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=65.4
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----CCCCccccccccccCCCChhHHHHHHH
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~----~~~~~~~~~~~~~~~~~s~g~~~~~~l 193 (254)
-+.+|++++|.||||||||||+..++...... +.++.+++........ ..+...++. -.. .....+ ...+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~~a~~lG~~~~~l~---i~~-~~~~e~-~l~~ 130 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPEYAKKLGVDTDSLL---VSQ-PDTGEQ-ALEI 130 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCE---EEC-CSSHHH-HHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHHHHHHcCCCHHHeE---Eec-CCCHHH-HHHH
Confidence 47789999999999999999988888665443 5667776543211100 000001110 001 112222 2334
Q ss_pred HHHHc--cCCCEEEEeCCCchH----------HH----------HHHHHH----HhCCceEEEEEchhh
Q 025371 194 EAVEN--HMPEVIIVDEIGTEA----------EA----------HACRSI----AERGVMLIGTAHGEW 236 (254)
Q Consensus 194 ~~al~--~~P~viilDEp~~~l----------d~----------~~~~~~----~~~G~~vi~t~H~~~ 236 (254)
++++. .+|++||+||+.... |. ..+.++ .+.|.++|+++|...
T Consensus 131 ~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 44443 469999999997643 21 113333 356999999999753
No 121
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.70 E-value=6.6e-09 Score=102.71 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=54.7
Q ss_pred ccCCCChhHHHHHHHHHHHccCCC--EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~P~--viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
....+|+|++||+.||++|..+|+ ++|||||++++|+.. +.++.+.|.|+|+++|+.++... .+.++
T Consensus 461 ~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii 536 (916)
T 3pih_A 461 SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHII 536 (916)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEE
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 345679999999999999999877 999999999998754 44455679999999999887765 45543
No 122
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.67 E-value=1.3e-08 Score=95.12 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=53.7
Q ss_pred cCCC-ChhHHHHHHHHHHHccCC--CEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 180 MQVP-EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 180 ~~~~-s~g~~~~~~l~~al~~~P--~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
+..+ |+|++||+++++++..+| ++||+|||++++|... +.++.+ |++||++||+.++... +++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~-~d~~~ 468 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAAR-AHHHY 468 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHH-SSEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHh-CCEEE
Confidence 3445 999999999999999999 9999999999999765 444444 8999999999887775 44443
No 123
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.65 E-value=1.1e-07 Score=87.92 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=49.3
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCCC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 202 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P~ 202 (254)
..++|+||||+|||||++++++.... .++.+... ++ . ......++.+.+..++.+....|.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~----~f~~is~~-~~------~--------~~~~g~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANV----PFFHISGS-DF------V--------ELFVGVGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTC----CEEEEEGG-GT------T--------TCCTTHHHHHHHHHHHHHHHTCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC----CeeeCCHH-HH------H--------HHHhcccHHHHHHHHHHHHhcCCC
Confidence 45999999999999999999996532 23333211 11 0 011123556778889999999999
Q ss_pred EEEEeCCCc
Q 025371 203 VIIVDEIGT 211 (254)
Q Consensus 203 viilDEp~~ 211 (254)
+|++||+..
T Consensus 111 ILfIDEid~ 119 (476)
T 2ce7_A 111 IVFIDEIDA 119 (476)
T ss_dssp EEEEETGGG
T ss_pred EEEEechhh
Confidence 999999943
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.64 E-value=2e-08 Score=92.78 Aligned_cols=44 Identities=32% Similarity=0.383 Sum_probs=36.7
Q ss_pred hhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 113 DMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 113 ~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
+.+++.+..|++++|+|+||||||||++.|+|++.+. +++|.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 3455567889999999999999999999999999876 5566654
No 125
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.63 E-value=2.9e-08 Score=98.34 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=55.4
Q ss_pred ccCCCChhHHHHHHHHHHHccC--CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~--P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
....+|+|++||+.||++|.++ |+++|||||+++||+.. +.++.+.|.|||+++|+.+.... .+.++
T Consensus 518 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~-ADrIi 593 (993)
T 2ygr_A 518 AAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEH-ADWIV 593 (993)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHT-CSEEE
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHh-CCEEE
Confidence 3445799999999999999998 59999999999999765 45566789999999999887764 45543
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.62 E-value=9.9e-08 Score=79.52 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=31.2
Q ss_pred hccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 116 ~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
..-+.+|++++|+||||||||||+..++....+. +.+++++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVA 58 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 4558899999999999999999976665443333 55666654
No 127
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.62 E-value=1.3e-08 Score=81.73 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=49.1
Q ss_pred ccCCCChhHHHHHHHHHHHcc----CCCEEEEeCCCchHHHHHHHHH------HhCCceEEEEEchhhHHHHhCChh
Q 025371 179 RMQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACRSI------AERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~----~P~viilDEp~~~ld~~~~~~~------~~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
....+|+|++|+++++++++. .|+++|+|||++++|......+ ...+.++|+++|....... .+.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~-ad~i 136 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMAN-ADKI 136 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT-CSEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHh-CCEE
Confidence 456689999999999999974 4699999999999998762221 1235678888888766544 3443
No 128
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.60 E-value=6.2e-08 Score=84.28 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=34.9
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~ 160 (254)
.+|++++++|+|||||||+++.|++.+.+..|.++.+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46889999999999999999999999986557778777654
No 129
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.59 E-value=2.8e-08 Score=98.11 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=54.9
Q ss_pred ccCCCChhHHHHHHHHHHHccC--CCEEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~--P~viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
....+|+|++||+.||++|..+ |+++|||||+++||+.. +.++.+.|.|||+++|+.+.... .+.++
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~-ADrIi 576 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA-ADYLI 576 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHS-CSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh-CCEEE
Confidence 3445799999999999999998 49999999999998654 45566789999999999887664 45443
No 130
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.56 E-value=3.2e-08 Score=80.50 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=26.3
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+.+|++++|+||||||||||+++|+++++
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356799999999999999999999999874
No 131
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.55 E-value=3.5e-08 Score=96.75 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=54.7
Q ss_pred ccCCCChhHHHHHHHHHHHccCCC--EEEEeCCCchHHHHH-------HHHHHhCCceEEEEEchhhHHHHhCChhh
Q 025371 179 RMQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPIL 246 (254)
Q Consensus 179 ~~~~~s~g~~~~~~l~~al~~~P~--viilDEp~~~ld~~~-------~~~~~~~G~~vi~t~H~~~~~~~~~~~~~ 246 (254)
....+|+|++||+.||++|..+|+ ++|||||+++||+.. +.++.+.|.|||+++|+.++... .+.++
T Consensus 376 ~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~-aD~ii 451 (842)
T 2vf7_A 376 STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR-ADWLV 451 (842)
T ss_dssp BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT-CSEEE
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh-CCEEE
Confidence 445679999999999999999994 999999999997654 44566779999999999887664 44443
No 132
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.54 E-value=1.6e-07 Score=80.67 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=46.9
Q ss_pred hhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHH
Q 025371 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 114 ~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l 193 (254)
.+...+..| ++|+||||||||||+++|++...+ ..+.+.... +. ....+ ......+..+
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~-l~------~~~~~--------~~~~~i~~vf 96 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPE-LL------NMYVG--------ESERAVRQVF 96 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTT-TC------SSTTH--------HHHHHHHHHH
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHH-HH------hhhhh--------HHHHHHHHHH
Confidence 334445555 999999999999999999998765 234443321 10 00000 0111223344
Q ss_pred HHHHccCCCEEEEeCCCc
Q 025371 194 EAVENHMPEVIIVDEIGT 211 (254)
Q Consensus 194 ~~al~~~P~viilDEp~~ 211 (254)
..+....|.++++||...
T Consensus 97 ~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 97 QRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp HHHHHTCSEEEEEETCTT
T ss_pred HHHHhcCCCeEeeehhhh
Confidence 455566899999999965
No 133
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.51 E-value=2.2e-08 Score=87.91 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=22.4
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
++++|+|++|||||||+|.|+++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999999986
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.50 E-value=4.5e-07 Score=80.47 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=63.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCc--cccccccccCCCChhHHHHHHHHHHH--cc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH--SAIGTARRMQVPEPSLQHKVMIEAVE--NH 199 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~--~~~~~~~~~~~~s~g~~~~~~l~~al--~~ 199 (254)
.++|.||+|+|||||++.+++...+..+..+++++..........+.. ..++........+..... ..+...+ ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~ 124 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFL-ALLVEHLRERD 124 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHH-HHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHH-HHHHHHHhhcC
Confidence 899999999999999999999886542345565553221100000000 000000000001111111 1222222 24
Q ss_pred CCCEEEEeCCCchHHHHH---HHHHHh-------CCceEEEEEchhhHHHHhCCh
Q 025371 200 MPEVIIVDEIGTEAEAHA---CRSIAE-------RGVMLIGTAHGEWLENIIKNP 244 (254)
Q Consensus 200 ~P~viilDEp~~~ld~~~---~~~~~~-------~G~~vi~t~H~~~~~~~~~~~ 244 (254)
+|.+|++||+... +... +..+.+ .+..+|+++|..++.+.+...
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~ 178 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPS 178 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHH
T ss_pred CeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHH
Confidence 5889999999764 4333 333332 467889999987665555443
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.50 E-value=3.6e-08 Score=82.17 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=22.3
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHH-hccC
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIA-RVLS 147 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~-g~~~ 147 (254)
...+++.+++|++++|+||||||||||+++|+ ++++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 55677889999999999999999999999999 9873
No 136
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.49 E-value=1e-07 Score=93.21 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=77.2
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC--CCeEEEEcCCCccccC---------CCCCccccc-----
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGD---------GDIPHSAIG----- 175 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~--~~~i~~~~~~~ei~~~---------~~~~~~~~~----- 175 (254)
...+...+..|+.++++|||||||||++..++....... +.+++++....++... .......++
T Consensus 99 ~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~ 178 (773)
T 2xau_A 99 RDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF 178 (773)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETT
T ss_pred HHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecc
Confidence 344445577889999999999999999988866543322 4445554332221100 000000000
Q ss_pred -----cccccCCCChhHHHHHHHHHHHccCCCEEEEeCCCc-hHHHHH----HHHHH---hCCceEEE-EEch-hhHHHH
Q 025371 176 -----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT-EAEAHA----CRSIA---ERGVMLIG-TAHG-EWLENI 240 (254)
Q Consensus 176 -----~~~~~~~~s~g~~~~~~l~~al~~~P~viilDEp~~-~ld~~~----~~~~~---~~G~~vi~-t~H~-~~~~~~ 240 (254)
...++.+.+.|+.++.+++..+..++++||+||+.. .+|... +..+. ....++++ .||+ ..+.+.
T Consensus 179 ~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~ 258 (773)
T 2xau_A 179 ENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258 (773)
T ss_dssp EEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred ccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence 012233457889898888888889999999999985 677543 22222 22345555 4776 334444
Q ss_pred hC
Q 025371 241 IK 242 (254)
Q Consensus 241 ~~ 242 (254)
+.
T Consensus 259 ~~ 260 (773)
T 2xau_A 259 FN 260 (773)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 137
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.49 E-value=4.2e-07 Score=78.25 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=50.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
++..++|.||+|+||||+++++++... ...+.+....... ....+.+...+..+..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~~~~l~~---------------~~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNISAASLTS---------------KYVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEESTTTSS---------------SSCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEeeHHHHhh---------------cccchHHHHHHHHHHHHHHcC
Confidence 467899999999999999999998763 2334333221110 011234566677788888889
Q ss_pred CCEEEEeCCCc
Q 025371 201 PEVIIVDEIGT 211 (254)
Q Consensus 201 P~viilDEp~~ 211 (254)
|.+|++||+..
T Consensus 114 ~~vl~iDEid~ 124 (297)
T 3b9p_A 114 PSIIFIDEVDS 124 (297)
T ss_dssp SEEEEEETGGG
T ss_pred CcEEEeccHHH
Confidence 99999999955
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.48 E-value=6.1e-08 Score=79.60 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=31.0
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
.++|++++|+||||||||||+++|++++.+. +..+.++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v 56 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVV 56 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEE
Confidence 4678999999999999999999999999864 3333433
No 139
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.47 E-value=7.7e-07 Score=78.18 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=59.4
Q ss_pred hhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc-------CCCC-Cccccccc-cccCCCC
Q 025371 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------DGDI-PHSAIGTA-RRMQVPE 184 (254)
Q Consensus 114 ~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~-------~~~~-~~~~~~~~-~~~~~~s 184 (254)
.+++...++++++++|+|||||||++..|++.+.+. ++++.+++....-.. .... ...++... .......
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~ 175 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNAD 175 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCC
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCC
Confidence 455556788999999999999999999999999875 677777654321000 0000 00111100 0001112
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCch
Q 025371 185 PSLQHKVMIEAVENHMPEVIIVDEIGTE 212 (254)
Q Consensus 185 ~g~~~~~~l~~al~~~P~viilDEp~~~ 212 (254)
........+..++..+.|+||+|=|...
T Consensus 176 p~~~~~~~l~~~~~~~yD~VIIDTpg~l 203 (320)
T 1zu4_A 176 PASVVFDAIKKAKEQNYDLLLIDTAGRL 203 (320)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 2223344566667789999999998763
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=1e-06 Score=75.22 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=47.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
..+..++|.||+|+|||||+++++..... .++.+... ++. .. .........+..+..+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~----~~~~v~~~-~~~------~~--------~~~~~~~~~~~~~~~~~~~ 109 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNA----TFIRVVGS-ELV------KK--------FIGEGASLVKDIFKLAKEK 109 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTC----EEEEEEGG-GGC------CC--------STTHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehH-HHH------Hh--------ccchHHHHHHHHHHHHHHc
Confidence 45678999999999999999999987642 33333221 110 00 0011223345566777778
Q ss_pred CCCEEEEeCCCc
Q 025371 200 MPEVIIVDEIGT 211 (254)
Q Consensus 200 ~P~viilDEp~~ 211 (254)
.|.+|++||...
T Consensus 110 ~~~vl~iDEid~ 121 (285)
T 3h4m_A 110 APSIIFIDEIDA 121 (285)
T ss_dssp CSEEEEEETTHH
T ss_pred CCeEEEEECHHH
Confidence 999999999954
No 141
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.45 E-value=7.4e-08 Score=89.04 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=36.3
Q ss_pred cchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC
Q 025371 110 GHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (254)
Q Consensus 110 ~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~ 151 (254)
..++.+++.+++ ++++|+||||||||||+++|+|+++|+.|
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 346788888999 99999999999999999999999988644
No 142
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.45 E-value=5e-07 Score=80.50 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=35.0
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~ 160 (254)
-+.+|+++.|.||||||||||+..++....+. ++++++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E 98 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAE 98 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecc
Confidence 47789999999999999999999999887654 5667777543
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.45 E-value=5.5e-07 Score=75.14 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=59.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCc-cccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~e-i~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.+|.+++++|++|+||||++.-++...... +.++.++..... -.......+.... .......+. ...+..+..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r~~~~i~srlG~~-~~~~~~~~~----~~i~~~i~~ 83 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTRSIRNIQSRTGTS-LPSVEVESA----PEILNYIMS 83 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGGGCSSCCCCCCCS-SCCEEESST----HHHHHHHHS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCchHHHHHHHhcCCC-ccccccCCH----HHHHHHHHH
Confidence 458899999999999999887666555433 566666521110 0110001111100 001111111 112222222
Q ss_pred ----cCCCEEEEeCCCch--HHHHHHHHHHhCCceEEEEEch
Q 025371 199 ----HMPEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHG 234 (254)
Q Consensus 199 ----~~P~viilDEp~~~--ld~~~~~~~~~~G~~vi~t~H~ 234 (254)
.+|++|++||...- .-.+.+..+.+.|..||++.|.
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLD 125 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCS
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 35999999999652 1223456667789999999994
No 144
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.43 E-value=2.5e-07 Score=88.00 Aligned_cols=40 Identities=23% Similarity=0.525 Sum_probs=35.3
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEF 150 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~ 150 (254)
..+.++..+..|+.++|+||||||||||+++|++++++..
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 3567777799999999999999999999999999998753
No 145
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.42 E-value=1.5e-07 Score=83.71 Aligned_cols=49 Identities=22% Similarity=0.167 Sum_probs=39.8
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
+++..+... ...++.+ +.+.+|+.++|+||||||||||+++|+|+..++
T Consensus 50 ~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 50 VIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 555555421 1247777 789999999999999999999999999999886
No 146
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.41 E-value=1.4e-07 Score=83.45 Aligned_cols=46 Identities=26% Similarity=0.433 Sum_probs=38.9
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
.++.+++.+.+|++++|+|+||||||||+++|+|++.++ ++++.+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~ 89 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVL 89 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEE
Confidence 367788889999999999999999999999999999876 4455444
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=3.6e-07 Score=83.11 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.2
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
...+++.++.++.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45677778899999999999999999999999984
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.40 E-value=6.7e-07 Score=77.61 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=48.5
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.++..++|.||+|||||||+++|++... ...+.++.. ++. ... . .......+..+..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~-~l~------~~~------~--g~~~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGP-ELL------TMW------F--GESEANVREIFDKARQ 106 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHH-HHH------HHH------H--TTCTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhH-HHH------hhh------c--CchHHHHHHHHHHHHh
Confidence 46678899999999999999999999764 233433221 110 000 0 0112234456677777
Q ss_pred cCCCEEEEeCCCc
Q 025371 199 HMPEVIIVDEIGT 211 (254)
Q Consensus 199 ~~P~viilDEp~~ 211 (254)
..|.+|++||+..
T Consensus 107 ~~p~il~iDEid~ 119 (301)
T 3cf0_A 107 AAPCVLFFDELDS 119 (301)
T ss_dssp TCSEEEEECSTTH
T ss_pred cCCeEEEEEChHH
Confidence 8899999999965
No 149
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.40 E-value=9.9e-08 Score=77.91 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
++|+.++|+||||||||||++.|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999875
No 150
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.39 E-value=1.4e-07 Score=75.88 Aligned_cols=27 Identities=33% Similarity=0.591 Sum_probs=25.8
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
+.+|++++|+|||||||||+++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999999999998
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.39 E-value=1.3e-07 Score=76.24 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=25.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
|++++|+||||||||||+++|++++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 4679999999999999999999998743
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.38 E-value=1.9e-07 Score=81.47 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=30.5
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccC--cCCCCeEEE
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLS--DEFQKRVVI 156 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~--~~~~~~i~~ 156 (254)
.+|++++|+||||||||||+++|++++. ++ ++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~-~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE-HRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT-CCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC-CCeEEE
Confidence 7789999999999999999999999987 65 344444
No 153
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.36 E-value=3.3e-06 Score=71.14 Aligned_cols=69 Identities=29% Similarity=0.397 Sum_probs=44.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
...++|+||||+||||++++|++.... .++.++... +. .. .........+..+..+....|
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~----~~~~i~~~~-~~------~~--------~~~~~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSD-FV------EM--------FVGVGASRVRDMFEQAKKAAP 105 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC----CEEEECSCS-ST------TS--------CCCCCHHHHHHHHHHHHTTCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC----CEEEEeHHH-HH------HH--------hhhhhHHHHHHHHHHHHHcCC
Confidence 346999999999999999999997643 234443221 10 00 001122334455666767789
Q ss_pred CEEEEeCC
Q 025371 202 EVIIVDEI 209 (254)
Q Consensus 202 ~viilDEp 209 (254)
.++++||.
T Consensus 106 ~il~iDei 113 (257)
T 1lv7_A 106 CIIFIDEI 113 (257)
T ss_dssp EEEEETTH
T ss_pred eeehhhhh
Confidence 99999998
No 154
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.36 E-value=2.3e-07 Score=84.91 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=42.6
Q ss_pred EEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 99 GLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 99 ~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
+++..+... ...++.+ +.+.+|+.++|+||||||||||+++|+|+..++. ..+....
T Consensus 136 ~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~-G~i~~~G 192 (438)
T 2dpy_A 136 PIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADV-IVVGLIG 192 (438)
T ss_dssp CCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE-EEEEEES
T ss_pred ccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCe-EEEEEec
Confidence 455555321 1247778 8899999999999999999999999999998863 3344443
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.36 E-value=3.2e-07 Score=81.12 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=61.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCC--CCeEEEEcCCCccc---cCCCCCccccccccccCCCChhHHHHHHHHHH
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIG---GDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~--~~~i~~~~~~~ei~---~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~a 196 (254)
+..++|.||+|+|||||++.+++.+.+.. +..+++++...... ....+. ..++......-.+... ....+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~~-~~~~l~~~ 122 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL-ESLDVKVPFTGLSIAE-LYRRLVKA 122 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT-TTTSCCCCSSSCCHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH-HHhCCCCCCCCCCHHH-HHHHHHHH
Confidence 56899999999999999999999875432 23445544211000 000000 0000000000011111 12223333
Q ss_pred Hc--cCCCEEEEeCCCchHH------HHHHHHHH----hCCceEEEEEchhhHHHHhCChh
Q 025371 197 EN--HMPEVIIVDEIGTEAE------AHACRSIA----ERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 197 l~--~~P~viilDEp~~~ld------~~~~~~~~----~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
+. ..|.+|++||+....+ ...+.+.. ..+..+|+++|..+....+....
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~ 183 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRV 183 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHH
T ss_pred HhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHH
Confidence 33 2389999999976432 11233333 22567899999876544444443
No 156
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.35 E-value=1.5e-07 Score=76.95 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.++|++++|+||||||||||++.|+|++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356889999999999999999999998765
No 157
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=1.9e-07 Score=85.54 Aligned_cols=97 Identities=12% Similarity=0.259 Sum_probs=56.1
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCC-CCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~-~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
..++|.||+|+|||||+++|++.+.... +..+++++... +. ..... ... ... ...+...+..+|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~~------~~~~~---~~~--~~~---~~~~~~~~~~~~ 195 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FL------NDLVD---SMK--EGK---LNEFREKYRKKV 195 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-HH------HHHHH---HHH--TTC---HHHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HH------HHHHH---HHH--ccc---HHHHHHHhcCCC
Confidence 5799999999999999999999874321 33444443211 10 00000 000 000 112333444489
Q ss_pred CEEEEeCCCchHH----HHH----HHHHHhCCceEEEEEch
Q 025371 202 EVIIVDEIGTEAE----AHA----CRSIAERGVMLIGTAHG 234 (254)
Q Consensus 202 ~viilDEp~~~ld----~~~----~~~~~~~G~~vi~t~H~ 234 (254)
++|++||+....+ ... +..+.+.|..+|+++|.
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 9999999965322 122 33345678888888886
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.33 E-value=4.4e-07 Score=76.48 Aligned_cols=31 Identities=39% Similarity=0.604 Sum_probs=25.3
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
++..+..| ++|+||||||||||+++|++...
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 33334444 99999999999999999999875
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.33 E-value=3e-07 Score=73.77 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+|+.++|+||||||||||++.|++..++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 5789999999999999999999998763
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.31 E-value=3.6e-07 Score=74.15 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=27.0
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+.+|++++|+|||||||||+++.|++.+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 578999999999999999999999999854
No 161
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=3.5e-06 Score=70.76 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=45.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.....++|.||+|+||||++++++..... .++.+....... .. ........+..+..+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~----~~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~a~~~ 97 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQV----PFLAMAGAEFVE---VI------------GGLGAARVRSLFKEARAR 97 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTC----CEEEEETTTTSS---SS------------TTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEechHHHHh---hc------------cChhHHHHHHHHHHHHhc
Confidence 34457999999999999999999986532 334333321110 00 001123344556666677
Q ss_pred CCCEEEEeCCCc
Q 025371 200 MPEVIIVDEIGT 211 (254)
Q Consensus 200 ~P~viilDEp~~ 211 (254)
.|.+|++||...
T Consensus 98 ~~~vl~iDeid~ 109 (262)
T 2qz4_A 98 APCIVYIDEIDA 109 (262)
T ss_dssp CSEEEEEECC--
T ss_pred CCeEEEEeCcch
Confidence 899999999965
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.3e-06 Score=78.77 Aligned_cols=74 Identities=24% Similarity=0.411 Sum_probs=51.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+++.||||||||+|.+++++.... .++.+..+.-+. ..+..+...-+..+..|..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~----~f~~v~~s~l~s---------------k~vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC----KFIRVSGAELVQ---------------KYIGEGSRMVRELFVMARE 239 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC----EEEEEEGGGGSC---------------SSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC----CceEEEhHHhhc---------------cccchHHHHHHHHHHHHHH
Confidence 455578999999999999999999997643 344443322110 0111223345677888888
Q ss_pred cCCCEEEEeCCCc
Q 025371 199 HMPEVIIVDEIGT 211 (254)
Q Consensus 199 ~~P~viilDEp~~ 211 (254)
..|.+|++||..+
T Consensus 240 ~aP~IIFiDEiDa 252 (405)
T 4b4t_J 240 HAPSIIFMDEIDS 252 (405)
T ss_dssp TCSEEEEEESSSC
T ss_pred hCCceEeeecchh
Confidence 9999999999954
No 163
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.29 E-value=3.1e-07 Score=83.58 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.3
Q ss_pred hhhhhccccCCcE--EEEECCCCCCHHHHHHHHHhcc
Q 025371 112 IDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 112 ~~~l~~~i~~g~~--~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
++.+++.+++|++ ++|+||||||||||+|+|+|+.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 7889999999999 9999999999999999999985
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.29 E-value=1.4e-06 Score=80.09 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=36.6
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
++.+..-+.+|+.++|.|+||+|||||+..++....+..+..+.++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44444458899999999999999999999999877653355666653
No 165
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.28 E-value=5.4e-07 Score=82.12 Aligned_cols=63 Identities=6% Similarity=0.041 Sum_probs=49.9
Q ss_pred cCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCchHHHHHHH-------HHHhCCceEEEEEchhhHHHHhC
Q 025371 180 MQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIK 242 (254)
Q Consensus 180 ~~~~s~g~~~~~~l~~al~----~~P~viilDEp~~~ld~~~~~-------~~~~~G~~vi~t~H~~~~~~~~~ 242 (254)
...+|+|++++++++++++ .+|+++|+|||++++|..... ++...|.++|+|+|.......++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d 404 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSD 404 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCS
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCC
Confidence 4568999999999999998 579999999999999987622 22233679999999976655433
No 166
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.28 E-value=4e-07 Score=74.15 Aligned_cols=46 Identities=28% Similarity=0.311 Sum_probs=34.7
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.+......++|++++|+|||||||||+++.|++.+. ..+...++++
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 344555567899999999999999999999999987 3344323443
No 167
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.28 E-value=7.6e-07 Score=76.19 Aligned_cols=31 Identities=39% Similarity=0.604 Sum_probs=25.3
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
++..+..| ++|+||||||||||+++|++...
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 33334444 99999999999999999999875
No 168
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.27 E-value=2.2e-06 Score=84.15 Aligned_cols=73 Identities=26% Similarity=0.438 Sum_probs=49.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+++.++|+||||||||||+++|++.+.. ..+.++.. ++.. ..........+..+..+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~----~~i~v~~~-~l~~--------------~~~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGP-EIMS--------------KLAGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTC----EEEEEEHH-HHSS--------------SSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCC----cEEEEEch-Hhhh--------------hhhhhHHHHHHHHHHHHHh
Confidence 567889999999999999999999998753 23333321 1100 0001122334556777777
Q ss_pred cCCCEEEEeCCC
Q 025371 199 HMPEVIIVDEIG 210 (254)
Q Consensus 199 ~~P~viilDEp~ 210 (254)
..|.++++||+.
T Consensus 296 ~~p~il~iDEid 307 (806)
T 1ypw_A 296 NAPAIIFIDELD 307 (806)
T ss_dssp HCSEEEEEESGG
T ss_pred cCCcEEEeccHH
Confidence 899999999993
No 169
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.26 E-value=3.7e-06 Score=73.75 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=48.2
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
+...++|.||+|+|||||+++++.... +..++.+....-.. . .........+..+..+...+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~-------~--------~~g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS-------K--------WLGESEKLVKNLFQLARENK 105 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCC-------S--------SCCSCHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHh-------h--------hhhHHHHHHHHHHHHHHhcC
Confidence 446899999999999999999998762 23444444332110 0 00112233455666677789
Q ss_pred CCEEEEeCCCc
Q 025371 201 PEVIIVDEIGT 211 (254)
Q Consensus 201 P~viilDEp~~ 211 (254)
|.+|++||+..
T Consensus 106 ~~vl~iDEid~ 116 (322)
T 1xwi_A 106 PSIIFIDEIDS 116 (322)
T ss_dssp SEEEEEETTTG
T ss_pred CcEEEeecHHH
Confidence 99999999965
No 170
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.1e-06 Score=78.45 Aligned_cols=74 Identities=23% Similarity=0.420 Sum_probs=51.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+++.||||||||+|.++|++.... .++.+..+.-+. ..+..+....+..+..|..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~----~~~~v~~s~l~s---------------k~~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGA----NFIFSPASGIVD---------------KYIGESARIIREMFAYAKE 272 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGGGTCC---------------SSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC----CEEEEehhhhcc---------------ccchHHHHHHHHHHHHHHh
Confidence 455678999999999999999999997643 344443321110 0111123345677888888
Q ss_pred cCCCEEEEeCCCc
Q 025371 199 HMPEVIIVDEIGT 211 (254)
Q Consensus 199 ~~P~viilDEp~~ 211 (254)
..|.+|++||..+
T Consensus 273 ~~P~IifiDEiDa 285 (437)
T 4b4t_L 273 HEPCIIFMDEVDA 285 (437)
T ss_dssp SCSEEEEEECCCS
T ss_pred cCCceeeeecccc
Confidence 9999999999954
No 171
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.25 E-value=9.6e-07 Score=70.42 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=34.2
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+..|.++..+... -+.+...+.+| +.+|+||||||||||+++|.+++.+
T Consensus 4 i~~l~i~nf~~~~--~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 4 IEKLELKGFKSYG--NKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEEESBGGGC--SSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEEEEeCeEeec--CccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456665432210 03455556677 8999999999999999999988764
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.24 E-value=1.6e-06 Score=71.48 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.+..++|.||+|+|||||++.++...... +..+.+++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~ 87 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIP 87 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 46789999999999999999999887653 44555544
No 173
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.23 E-value=5.7e-07 Score=80.46 Aligned_cols=65 Identities=20% Similarity=0.111 Sum_probs=47.9
Q ss_pred cCCCChhHHHHH------HHHHHHccC-CCEEEEeCCCchHHHHHHHHH----H--hCCceEEEEEchhhHHHHhCChh
Q 025371 180 MQVPEPSLQHKV------MIEAVENHM-PEVIIVDEIGTEAEAHACRSI----A--ERGVMLIGTAHGEWLENIIKNPI 245 (254)
Q Consensus 180 ~~~~s~g~~~~~------~l~~al~~~-P~viilDEp~~~ld~~~~~~~----~--~~G~~vi~t~H~~~~~~~~~~~~ 245 (254)
...+|+|+++++ ++++++..+ |+++|+|||++++|......+ . ..+.++|+|+|+..+.. +.+.+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~-~~d~~ 355 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED-VADVI 355 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGG-GCSEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHh-hCCEE
Confidence 345899999987 456778889 999999999999998762222 1 23468999999987543 44443
No 174
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=2.1e-06 Score=78.33 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=50.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+++.||||||||+|.+++++.... .++.+... ++. . ..+..+...-+..+..|..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~----~f~~v~~s-~l~------~--------~~vGese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNA----TFLKLAAP-QLV------Q--------MYIGEGAKLVRDAFALAKE 272 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----EEEEEEGG-GGC------S--------SCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCC----CEEEEehh-hhh------h--------cccchHHHHHHHHHHHHHh
Confidence 445678999999999999999999997643 33443322 111 0 0111223445677888888
Q ss_pred cCCCEEEEeCCC
Q 025371 199 HMPEVIIVDEIG 210 (254)
Q Consensus 199 ~~P~viilDEp~ 210 (254)
..|.+|++||..
T Consensus 273 ~aP~IifiDEiD 284 (434)
T 4b4t_M 273 KAPTIIFIDELD 284 (434)
T ss_dssp HCSEEEEEECTH
T ss_pred cCCeEEeecchh
Confidence 999999999984
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.21 E-value=8.6e-07 Score=72.75 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=26.8
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
++|+.++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57899999999999999999999999865
No 176
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.19 E-value=1.1e-06 Score=73.36 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=62.6
Q ss_pred CCc-EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCC----cc-ccCCCCCccccccccccCCCChhHHHHHHHH
Q 025371 121 YGK-SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN----EI-GGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 121 ~g~-~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~----ei-~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
.|+ ++.+.|++|+||||++-.++..+... |.++.+++-.. +. ......+...... .. ..+.......+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~---~~-~~~~~~~e~~l~ 78 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGRAETEALLNGLPQQPLLR---TE-YRGMTLEEMDLD 78 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTCHHHHHHHTTSCBCCCEE---EE-ETTEEEEECCHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCChhHHHHhcCccccCcce---ee-cCCcccccccHH
Confidence 355 48999999999999987777666543 66665544321 10 0000111100000 00 011100001133
Q ss_pred HHHccCCCEEEEeCCCch--------HHHHHHHHHHhCCceEEEEEch---hhHHHH
Q 025371 195 AVENHMPEVIIVDEIGTE--------AEAHACRSIAERGVMLIGTAHG---EWLENI 240 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~--------ld~~~~~~~~~~G~~vi~t~H~---~~~~~~ 240 (254)
.++..+|+++|+||+... .-...+....+.|..+++|+|- .++.+.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~ 135 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQ 135 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHH
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHH
Confidence 444468999999998742 1223355567889999999974 354444
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.19 E-value=6.8e-07 Score=72.73 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=24.7
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.+|++++|+|||||||||+++.|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999986
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.18 E-value=9.4e-07 Score=77.18 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=28.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
+..++|.||+|+|||||+++++..+... +..+++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 3579999999999999999999987654 44555543
No 179
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.4e-06 Score=76.88 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=50.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+++.||||||||+|.+++++.... .++.+....-+. ..+......-+..+..|..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~----~~~~v~~~~l~~---------------~~~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKA----AFIRVNGSEFVH---------------KYLGEGPRMVRDVFRLARE 263 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTC----EEEEEEGGGTCC---------------SSCSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecchhhc---------------cccchhHHHHHHHHHHHHH
Confidence 445567999999999999999999997643 344443321110 0111123345667888888
Q ss_pred cCCCEEEEeCCC
Q 025371 199 HMPEVIIVDEIG 210 (254)
Q Consensus 199 ~~P~viilDEp~ 210 (254)
..|.+|++||..
T Consensus 264 ~aP~IifiDEiD 275 (428)
T 4b4t_K 264 NAPSIIFIDEVD 275 (428)
T ss_dssp TCSEEEEEECTH
T ss_pred cCCCeeechhhh
Confidence 999999999994
No 180
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.18 E-value=2.2e-06 Score=78.26 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC-CCC----CccccccccccCCCChhHHHHHHHHH
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GDI----PHSAIGTARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~-~~~----~~~~~~~~~~~~~~s~g~~~~~~l~~ 195 (254)
++.+++++|++||||||++..|+..+... +.++.+++....-... ... ....+.........+...-.+.+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 36789999999999999999999998765 7777766532110000 000 00000000000001111222345666
Q ss_pred HHccCCCEEEEeCCCc
Q 025371 196 VENHMPEVIIVDEIGT 211 (254)
Q Consensus 196 al~~~P~viilDEp~~ 211 (254)
+...++|++|+|+|..
T Consensus 175 a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCC
Confidence 6667999999999974
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.17 E-value=1.3e-05 Score=69.00 Aligned_cols=27 Identities=41% Similarity=0.628 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+..++|.||+|+||||++++++..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999987753
No 182
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=3.3e-06 Score=77.32 Aligned_cols=74 Identities=28% Similarity=0.350 Sum_probs=51.6
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+++.||||||||+|.++|++.... .++.+... ++. ...+..+...-+..+..|..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~----~fi~vs~s-~L~--------------sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDA----TFIRVIGS-ELV--------------QKYVGEGARMVRELFEMART 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTC----EEEEEEGG-GGC--------------CCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCC----CeEEEEhH-Hhh--------------cccCCHHHHHHHHHHHHHHh
Confidence 456678999999999999999999997643 33433322 111 01111233455678888888
Q ss_pred cCCCEEEEeCCCc
Q 025371 199 HMPEVIIVDEIGT 211 (254)
Q Consensus 199 ~~P~viilDEp~~ 211 (254)
..|.+|++||..+
T Consensus 301 ~aP~IIfiDEiDa 313 (467)
T 4b4t_H 301 KKACIIFFDEIDA 313 (467)
T ss_dssp TCSEEEEEECCTT
T ss_pred cCCceEeeccccc
Confidence 9999999999964
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.17 E-value=5.4e-07 Score=76.46 Aligned_cols=50 Identities=28% Similarity=0.303 Sum_probs=35.0
Q ss_pred EEEE-EEEE-CceeecchhhhhccccC---CcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 97 IVGL-TCRV-GRAVSGHIDMVYDLLHY---GKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 97 ~~~l-~ir~-~~~~~~~~~~l~~~i~~---g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+.++ +++| ... ..++.+++.+.+ |++++|+|++||||||+++.|++.+..
T Consensus 20 ~~~~~~~~~~~~~--~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 20 TGSLLHSPFDEEQ--QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp ------------C--HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EcceeeEEecCcc--hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3466 7766 322 358889999998 999999999999999999999997643
No 184
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=3.5e-06 Score=76.54 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=51.0
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+...+++.||||||||+|.+++++.... .++.+... ++. . ..+..+...-+..+..|..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~----~fi~v~~s-~l~------s--------k~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSA----TFLRIVGS-ELI------Q--------KYLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTC----EEEEEESG-GGC------C--------SSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCC----CEEEEEHH-Hhh------h--------ccCchHHHHHHHHHHHHHh
Confidence 455578999999999999999999997643 34444322 221 0 0111223345677888888
Q ss_pred cCCCEEEEeCCCc
Q 025371 199 HMPEVIIVDEIGT 211 (254)
Q Consensus 199 ~~P~viilDEp~~ 211 (254)
..|.+|++||..+
T Consensus 274 ~aP~IIfiDEiDa 286 (437)
T 4b4t_I 274 NAPSIVFIDEIDA 286 (437)
T ss_dssp TCSEEEEEEEESS
T ss_pred cCCcEEEEehhhh
Confidence 9999999999854
No 185
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.15 E-value=1.6e-06 Score=77.28 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=43.3
Q ss_pred CChhHHHHHHHHHHHc---------cCCCEEEEeCCCchHHHHHH---HHH-HhCCceEEEEEch
Q 025371 183 PEPSLQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHAC---RSI-AERGVMLIGTAHG 234 (254)
Q Consensus 183 ~s~g~~~~~~l~~al~---------~~P~viilDEp~~~ld~~~~---~~~-~~~G~~vi~t~H~ 234 (254)
+|+||+|+++++++|+ .+|+++++|||++++|.... .++ .+.+.++|+++|.
T Consensus 266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 4999999999999999 89999999999999998762 222 2334789999995
No 186
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=9.5e-07 Score=71.80 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=25.4
Q ss_pred chhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 111 HIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 111 ~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..+++++.+.++++++|+|++||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4677888889999999999999999999999998764
No 187
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.14 E-value=6.5e-06 Score=73.31 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=62.7
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----CCCCccccccccccCCCChhHHHHHHH
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~----~~~~~~~~~~~~~~~~~s~g~~~~~~l 193 (254)
-+++|+++.|.|++|||||||+..++...... +.++++++........ ......++. +...+..++....+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~a~~~g~~~~~l~----i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL----CSQPDTGEQALEIC 133 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCE----EECCSSHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHHHHHcCCChhhee----eeCCCCHHHHHHHH
Confidence 36789999999999999999998888665433 5667777642211000 000001110 00111223322222
Q ss_pred HHHH-ccCCCEEEEeCCCchH---H-----------HH------HHHHH----HhCCceEEEEEchhh
Q 025371 194 EAVE-NHMPEVIIVDEIGTEA---E-----------AH------ACRSI----AERGVMLIGTAHGEW 236 (254)
Q Consensus 194 ~~al-~~~P~viilDEp~~~l---d-----------~~------~~~~~----~~~G~~vi~t~H~~~ 236 (254)
.... ..+|++||+|++..-. + .. .+..+ .+.++++|++.|...
T Consensus 134 ~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred HHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 2222 3689999999996521 1 01 12222 356899999999743
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.12 E-value=1.2e-06 Score=76.09 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.5
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~ 151 (254)
+..|+.++|+||||||||||+|+|+|+..++.|
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G 198 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS 198 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccccc
Confidence 446899999999999999999999999988643
No 189
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.12 E-value=2.4e-06 Score=73.67 Aligned_cols=35 Identities=37% Similarity=0.661 Sum_probs=27.8
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
..++|.||+|+||||++++|++.+... +..++.++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 579999999999999999999988653 33344443
No 190
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.11 E-value=1.4e-06 Score=68.81 Aligned_cols=28 Identities=36% Similarity=0.573 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.+.+++|+|+|||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999998754
No 191
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.10 E-value=1.3e-06 Score=70.22 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHh
Q 025371 122 GKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
|++++|+|||||||||+++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999997
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.10 E-value=1.5e-06 Score=70.79 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=31.2
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
..++.+++|+|++||||||+++.|++.+.+. +..+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEe
Confidence 4567899999999999999999999998764 4455544
No 193
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=8.8e-06 Score=64.17 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|.||+|+||||+++.++..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.09 E-value=1.7e-06 Score=72.69 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=25.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHH---hccCcC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIA---RVLSDE 149 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~---g~~~~~ 149 (254)
.+++++|+|||||||||+++.|+ |+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999 887654
No 195
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.09 E-value=2.5e-07 Score=77.47 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.8
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~ 151 (254)
+.+ ++++|+||||||||||+++|++++.|+.+
T Consensus 25 ~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 25 LDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EcC-cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 444 68899999999999999999999988744
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.08 E-value=1.1e-05 Score=71.52 Aligned_cols=72 Identities=21% Similarity=0.388 Sum_probs=45.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
+...++|.||+|+|||||+++++.... ..++.+... ++.. . .........+..+..+...+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~~~-~l~~-------------~-~~g~~~~~~~~~f~~a~~~~ 143 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLVS-------------K-WMGESEKLVKQLFAMARENK 143 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEEHH-HHHS-------------C-C---CHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC----CCEEEeeHH-HHhh-------------h-hcchHHHHHHHHHHHHHHcC
Confidence 345799999999999999999998764 233433221 1100 0 00111233445566666779
Q ss_pred CCEEEEeCCCc
Q 025371 201 PEVIIVDEIGT 211 (254)
Q Consensus 201 P~viilDEp~~ 211 (254)
|.+|++||...
T Consensus 144 ~~vl~iDEid~ 154 (355)
T 2qp9_X 144 PSIIFIDQVDA 154 (355)
T ss_dssp SEEEEEECGGG
T ss_pred CeEEEEechHh
Confidence 99999999965
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=1.3e-06 Score=82.17 Aligned_cols=28 Identities=39% Similarity=0.700 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+|++++|+||||||||||+++|++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6889999999999999999999999865
No 198
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.08 E-value=2.1e-05 Score=69.59 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=33.2
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhcc--CcC---CCCeEEEEcCC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVL--SDE---FQKRVVIVDTS 160 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~--~~~---~~~~i~~~~~~ 160 (254)
-+++|+++.|.||+|||||||+..++... +.. .+.++++++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 47889999999999999999999988753 221 25677777543
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.07 E-value=1.1e-05 Score=70.66 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=33.0
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhccCcC-----CCCeEEEEcCC
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTS 160 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~-----~~~~i~~~~~~ 160 (254)
.-+++|+++.|.||+|||||||+..++...... .+.++++++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 347889999999999999999999988754211 14567776543
No 200
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.06 E-value=5e-06 Score=71.89 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
...++|.||||+|||+|.++|+..+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998773
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.05 E-value=6.4e-06 Score=76.62 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.6
Q ss_pred hccccCCcEEEEECCCCCCHHHHHHHHHh
Q 025371 116 YDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 116 ~~~i~~g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
...+..+..++|.|+|||||||++++|+.
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 33456678999999999999999999875
No 202
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.05 E-value=1e-05 Score=68.71 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=43.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
...++|.||+|+||||++++++.... ...+.+.....+.. ... .......+..+..+...+|
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~~g-----~~~---------~~~~~~~~~~~~~~~~~~~ 125 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKMIG-----FSE---------TAKCQAMKKIFDDAYKSQL 125 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGCTT-----CCH---------HHHHHHHHHHHHHHHTSSE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHhcC-----Cch---------HHHHHHHHHHHHHHHhcCC
Confidence 35799999999999999999998743 22333333222110 000 0011223345555666789
Q ss_pred CEEEEeCCC
Q 025371 202 EVIIVDEIG 210 (254)
Q Consensus 202 ~viilDEp~ 210 (254)
.+|++||+.
T Consensus 126 ~vl~iDEid 134 (272)
T 1d2n_A 126 SCVVVDDIE 134 (272)
T ss_dssp EEEEECCHH
T ss_pred cEEEEEChh
Confidence 999999963
No 203
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.04 E-value=2e-06 Score=68.15 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=24.4
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.+|++++|+|+|||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999999875
No 204
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.04 E-value=7.3e-06 Score=64.60 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=23.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+..++|.||+|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999987643
No 205
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.03 E-value=2e-05 Score=64.32 Aligned_cols=36 Identities=36% Similarity=0.557 Sum_probs=27.8
Q ss_pred hhhhccccCCc---EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 113 DMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 113 ~~l~~~i~~g~---~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+.+...+..+. .++|.||+|+|||||++.++..+..
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444455554 7999999999999999999987653
No 206
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.03 E-value=3.2e-06 Score=75.24 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=30.7
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC-cC
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS-DE 149 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~-~~ 149 (254)
++.++.. .+|+.++|+||||||||||+|+|+|... +.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~ 243 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL 243 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc
Confidence 4445443 3689999999999999999999999987 65
No 207
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.01 E-value=3.6e-06 Score=78.23 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+||||+|||||+++|++...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999874
No 208
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.01 E-value=3.2e-06 Score=69.16 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=25.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+|+.++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3688999999999999999999999875
No 209
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.01 E-value=3.1e-06 Score=70.43 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=25.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|++++|.|++||||||+++.|+++
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 467899999999999999999999997
No 210
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=1.3e-05 Score=71.10 Aligned_cols=71 Identities=28% Similarity=0.359 Sum_probs=46.3
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.....++|.||+|+|||||+++++.... ..++.+....... . .........+..+..+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~~~~l~~-------~--------~~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG----ATFFSISASSLTS-------K--------WVGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEEGGGGCC-------S--------STTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEehHHhhc-------c--------ccchHHHHHHHHHHHHHhc
Confidence 3456899999999999999999998753 3344443321110 0 0011223345566666678
Q ss_pred CCCEEEEeCC
Q 025371 200 MPEVIIVDEI 209 (254)
Q Consensus 200 ~P~viilDEp 209 (254)
+|.+|++||+
T Consensus 176 ~~~vl~iDEi 185 (357)
T 3d8b_A 176 QPAVIFIDEI 185 (357)
T ss_dssp CSEEEEEETH
T ss_pred CCeEEEEeCc
Confidence 8999999999
No 211
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.00 E-value=2.8e-06 Score=71.89 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=27.1
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHH---hccCcC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIA---RVLSDE 149 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~---g~~~~~ 149 (254)
...+|++++|+||+||||||+++.|+ |+..++
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34678999999999999999999999 765543
No 212
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.98 E-value=6.6e-06 Score=71.93 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=46.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 201 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~P 201 (254)
...++|.||+|+|||||+++++.... ..++.+... ++.. ..........+..+..+...+|
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~~~-~l~~--------------~~~g~~~~~~~~~f~~a~~~~~ 111 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN----STFFSVSSS-DLVS--------------KWMGESEKLVKQLFAMARENKP 111 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEEHH-HHHT--------------TTGGGHHHHHHHHHHHHHHTSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEchH-HHhh--------------cccchHHHHHHHHHHHHHhcCC
Confidence 45799999999999999999998753 334443221 1100 0001122334456677777899
Q ss_pred CEEEEeCCCc
Q 025371 202 EVIIVDEIGT 211 (254)
Q Consensus 202 ~viilDEp~~ 211 (254)
.+|++||...
T Consensus 112 ~vl~iDEid~ 121 (322)
T 3eie_A 112 SIIFIDQVDA 121 (322)
T ss_dssp EEEEEECGGG
T ss_pred eEEEechhhh
Confidence 9999999964
No 213
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.98 E-value=1.1e-06 Score=76.81 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=24.6
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
+.+|+.++|+||||||||||+|+|+|...+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 5579999999999999999999999998775
No 214
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.98 E-value=4.6e-06 Score=67.29 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=52.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHH-hccCcCCCCeEEEEcCCC--ccccCCCCCccccccccccCCCChhHHHHHHHHHHH
Q 025371 121 YGKSILFVGRPGVGKTTVMREIA-RVLSDEFQKRVVIVDTSN--EIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~-g~~~~~~~~~i~~~~~~~--ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al 197 (254)
+|.+++++||+||||||++.-++ .+... +.++.++.... .........+.... .......+. ...+. .+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~d~r~~~~~i~s~~g~~-~~~~~~~~~----~~~~~-~~ 73 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKIDSRYHSTMIVSHSGNG-VEAHVIERP----EEMRK-YI 73 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-----CCCEECC----C-EECEEESSG----GGGGG-GC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeeccccccCcccEEecCCCc-eeeEEECCH----HHHHH-Hh
Confidence 37789999999999999984444 43322 45554432110 00000000000000 000000000 00011 11
Q ss_pred ccCCCEEEEeCCCch-HH-HHHHHHHHhCCceEEEEEchh
Q 025371 198 NHMPEVIIVDEIGTE-AE-AHACRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 198 ~~~P~viilDEp~~~-ld-~~~~~~~~~~G~~vi~t~H~~ 235 (254)
..++++|++||...- .+ ...+..+.+.|..++++.+..
T Consensus 74 ~~~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDL 113 (184)
T ss_dssp CTTEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESB
T ss_pred cCCCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecc
Confidence 136899999998552 12 223555667798888888753
No 215
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.97 E-value=2.5e-06 Score=80.25 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=34.4
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
.+.+|++++|+|+||||||||+++|++.+.+..+..+.+++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 366899999999999999999999999998764445655544
No 216
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.97 E-value=5.2e-06 Score=72.21 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=27.2
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCC
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQ 151 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~ 151 (254)
..|+.++|+||||||||||+|+|+ +..+..+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G 193 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQ 193 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence 458999999999999999999999 8877633
No 217
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.95 E-value=2.1e-05 Score=69.43 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=70.2
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC--CCc-ccc-----CCCCCccccccccccCCC
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT--SNE-IGG-----DGDIPHSAIGTARRMQVP 183 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~--~~e-i~~-----~~~~~~~~~~~~~~~~~~ 183 (254)
++.+..-+.+|+.++|.|+||+|||||+..++...... +..+.++.- +.+ +.. ...++...+ +...+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l----~~g~L 110 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAEQLALRALSDLTSINMHDL----ESGRL 110 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHHHHHHHHHHHHHCCCHHHH----HHTCC
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHH----hcCCC
Confidence 44443448899999999999999999999888766542 566655532 111 100 001111111 12346
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCchHH-HHH-HHHHHh-C-CceEEEEEc
Q 025371 184 EPSLQHKVMIEAVENHMPEVIIVDEIGTEAE-AHA-CRSIAE-R-GVMLIGTAH 233 (254)
Q Consensus 184 s~g~~~~~~l~~al~~~P~viilDEp~~~ld-~~~-~~~~~~-~-G~~vi~t~H 233 (254)
+.++.++...+.....++++.|.|+|....+ ..+ ++++.. . |..+|++=|
T Consensus 111 s~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 111 DDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 7777788777777777888999998864333 222 444443 3 566666643
No 218
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.95 E-value=1.9e-05 Score=72.31 Aligned_cols=73 Identities=23% Similarity=0.436 Sum_probs=45.3
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
+...++|.||+|+|||||+++++.... +..++.+....-+. ...+ ......+..+..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~~-------~~~g--------~~~~~~~~~f~~a~~~~ 227 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVS-------KWLG--------ESEKLVKNLFQLARENK 227 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC------------------------CCCTHHHHHHHHHHSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHHh-------hhcc--------hHHHHHHHHHHHHHHcC
Confidence 446899999999999999999999762 23444443322110 0000 00112234555666678
Q ss_pred CCEEEEeCCCc
Q 025371 201 PEVIIVDEIGT 211 (254)
Q Consensus 201 P~viilDEp~~ 211 (254)
|.+|++||+..
T Consensus 228 ~~vl~iDEid~ 238 (444)
T 2zan_A 228 PSIIFIDEIDS 238 (444)
T ss_dssp SEEEEESCTTT
T ss_pred CeEEEEechHh
Confidence 99999999964
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.95 E-value=4.1e-05 Score=68.38 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=63.0
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----CCCCccccccccccCCCChhHHHHHHH
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~----~~~~~~~~~~~~~~~~~s~g~~~~~~l 193 (254)
-+.+|+++.|.|++|||||||+..++...... +..+++++........ ..+...++.. .. ....++....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i---~~-~~~~e~~l~~l 144 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVYARALGVNTDELLV---SQ-PDNGEQALEIM 144 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHHHHHTTCCGGGCEE---EC-CSSHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHHHHHHcCCCHHHcee---ec-CCcHHHHHHHH
Confidence 46789999999999999999998877654332 5667777543211100 0000011100 01 12233333333
Q ss_pred HHHHc-cCCCEEEEeCCCchH----------H----------HHHHHHH----HhCCceEEEEEchhh
Q 025371 194 EAVEN-HMPEVIIVDEIGTEA----------E----------AHACRSI----AERGVMLIGTAHGEW 236 (254)
Q Consensus 194 ~~al~-~~P~viilDEp~~~l----------d----------~~~~~~~----~~~G~~vi~t~H~~~ 236 (254)
..... .++++||+|.+..-. | ...+..+ .+.++++|++.|...
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 33332 579999999986421 1 0113333 356889999999753
No 220
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.95 E-value=5.9e-06 Score=72.53 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcC-CCCeEEEEc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDE-FQKRVVIVD 158 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~-~~~~i~~~~ 158 (254)
+++|+||||||||||+++|.+++... .+..+.++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 79999999999999999999998732 133444443
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.94 E-value=2.2e-06 Score=75.43 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=30.0
Q ss_pred hhhhhccccCC-------cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 112 IDMVYDLLHYG-------KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 112 ~~~l~~~i~~g-------~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+.++..+..| +.++|+||||+|||||+++|++.+.
T Consensus 34 ~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 34 KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45566666654 7899999999999999999999873
No 222
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.94 E-value=3.2e-05 Score=71.67 Aligned_cols=71 Identities=27% Similarity=0.465 Sum_probs=46.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.....++|.||+|+|||+++++|+.... ..++.++.. ++. .. + ........+..+..+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~-~l~------~~-------~-~g~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGP-EIM------SK-------L-AGESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHH-HHH------TS-------C-TTHHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEch-Hhh------hh-------h-cchhHHHHHHHHHHHHhc
Confidence 4456799999999999999999998652 344444321 110 00 0 001122345667778888
Q ss_pred CCCEEEEeCC
Q 025371 200 MPEVIIVDEI 209 (254)
Q Consensus 200 ~P~viilDEp 209 (254)
.|.+|++||+
T Consensus 297 ~p~iLfLDEI 306 (489)
T 3hu3_A 297 APAIIFIDEL 306 (489)
T ss_dssp CSEEEEEESH
T ss_pred CCcEEEecch
Confidence 9999999998
No 223
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.93 E-value=2.2e-06 Score=68.56 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=25.0
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
+.++|+|+||||||||++.|++++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 478999999999999999999999875
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.93 E-value=2.4e-06 Score=72.32 Aligned_cols=26 Identities=38% Similarity=0.647 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
...++|.||+|+|||||+++|+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC
Confidence 34589999999999999999998754
No 225
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.93 E-value=2.3e-05 Score=63.70 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=57.5
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC--CccccCCCCCccccccccccCCCChhHHHHHHHHHHH
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~--~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al 197 (254)
..|.+.+++||.||||||.+--++...... +.++.++... ..........+.... .......+. . ..+ ..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~~~~i~s~~g~~-~~a~~~~~~-~---~i~-~~~ 78 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVSHMGEK-EQAVAIKNS-R---EIL-KYF 78 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEECTTSCE-EECEEESSS-T---HHH-HHC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccchHHHHHhhcCCc-eeeEeeCCH-H---HHH-HHH
Confidence 457899999999999998887666555432 5566554210 000000000111100 000011111 1 111 111
Q ss_pred ccCCCEEEEeCCCc--hHHHHHHHHHHhCCceEEEEEchh
Q 025371 198 NHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 198 ~~~P~viilDEp~~--~ld~~~~~~~~~~G~~vi~t~H~~ 235 (254)
..+.|+|++||... ....+.+..+.+.|..||++.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 23579999999733 223445666677799999998854
No 226
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.91 E-value=5.7e-06 Score=67.38 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.2
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..+.++.+++|+|++||||||+++.|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467788999999999999999999999763
No 227
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.91 E-value=5.9e-06 Score=74.11 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=31.0
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
++.++..+++|++++|+||||||||||+++|++..
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45566678999999999999999999999999964
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.90 E-value=1.2e-05 Score=78.46 Aligned_cols=73 Identities=23% Similarity=0.416 Sum_probs=50.1
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+...+++.||+|+|||||++++++.+. ..++.++...-+. ........+-+.++..|...
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg----~~~~~v~~~~l~s---------------k~~gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMS---------------KLAGESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT----CEEEEEEHHHHHS---------------SCTTHHHHHHHHHHHHHTTS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC----CeEEEEEhHHhhc---------------ccchHHHHHHHHHHHHHHHc
Confidence 3446899999999999999999998764 3444443321110 00111234456778888889
Q ss_pred CCCEEEEeCCCc
Q 025371 200 MPEVIIVDEIGT 211 (254)
Q Consensus 200 ~P~viilDEp~~ 211 (254)
.|.+|++||..+
T Consensus 297 ~PsIIfIDEiDa 308 (806)
T 3cf2_A 297 APAIIFIDELDA 308 (806)
T ss_dssp CSEEEEEESGGG
T ss_pred CCeEEEEehhcc
Confidence 999999999854
No 229
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.89 E-value=5.3e-06 Score=73.26 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|.||+|+||||+++.++....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998774
No 230
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.89 E-value=4.8e-05 Score=66.52 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=62.2
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHH-hccCcCCCCeEEEEcCCCccccC----CCCCccccccccccCCCChhHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIA-RVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMI 193 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~-g~~~~~~~~~i~~~~~~~ei~~~----~~~~~~~~~~~~~~~~~s~g~~~~~~l 193 (254)
+.+| .+.|.||+|||||||+-.++ .......+.++++++....+... ..+...++. +......+++...+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~ll----v~~~~~~E~~~l~i 100 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVI----HTPVQSLEQLRIDM 100 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEE----EEECSBHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeE----EEcCCCHHHHHHHH
Confidence 6678 89999999999999965444 43332125678888754333110 001111111 01122344442333
Q ss_pred HHHH----ccCCCEEEEeCCCchH----------H------HH------HHHH----HHhCCceEEEEEchhhHHHHhCC
Q 025371 194 EAVE----NHMPEVIIVDEIGTEA----------E------AH------ACRS----IAERGVMLIGTAHGEWLENIIKN 243 (254)
Q Consensus 194 ~~al----~~~P~viilDEp~~~l----------d------~~------~~~~----~~~~G~~vi~t~H~~~~~~~~~~ 243 (254)
...+ ..+|+++|+|-+.+-. | .. .++. +.+.|+++|+|.|-......+.+
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k~G~~fg~ 180 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMFSK 180 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC---------
T ss_pred HHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeeecCcccCC
Confidence 3333 3579999999986521 1 01 1222 34679999999998664444544
Q ss_pred h
Q 025371 244 P 244 (254)
Q Consensus 244 ~ 244 (254)
+
T Consensus 181 p 181 (333)
T 3io5_A 181 T 181 (333)
T ss_dssp -
T ss_pred C
Confidence 4
No 231
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.88 E-value=7.6e-06 Score=65.08 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=28.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
+|++++|+|++||||||+++.|++.+.+. +..++.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEE
Confidence 57889999999999999999999987652 4334443
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.88 E-value=3.5e-05 Score=69.05 Aligned_cols=72 Identities=17% Similarity=0.351 Sum_probs=46.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 200 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~~ 200 (254)
....++|.||+|+|||||+++|+.... ..++.+....... ... .......+..+..+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~----~~~~~v~~~~l~~-------~~~--------g~~~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN----ATFFNISAASLTS-------KYV--------GEGEKLVRALFAVARELQ 207 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEECSCCC----------------------CHHHHHHHHHHHHHSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc----CcEEEeeHHHhhc-------ccc--------chHHHHHHHHHHHHHhcC
Confidence 356899999999999999999988643 3445443321110 000 011223445566666788
Q ss_pred CCEEEEeCCCc
Q 025371 201 PEVIIVDEIGT 211 (254)
Q Consensus 201 P~viilDEp~~ 211 (254)
|.+|++||+..
T Consensus 208 ~~il~iDEid~ 218 (389)
T 3vfd_A 208 PSIIFIDQVDS 218 (389)
T ss_dssp SEEEEEETGGG
T ss_pred CeEEEEECchh
Confidence 99999999943
No 233
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.86 E-value=9.8e-06 Score=72.22 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=33.5
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHh
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
+.+++++..+ ..+.++..+.+| +++|+|||||||||++.+|.+
T Consensus 6 i~~L~l~~~~----~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 6 LSALSTLNYR----NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEEESBT----TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EeEEEEeCcc----ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4566665422 244566668888 999999999999999999997
No 234
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.85 E-value=1.2e-05 Score=73.22 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
+..+++++|+||||||||||+++|+++..+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 5568899999999999999999999988764
No 235
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.84 E-value=6.6e-05 Score=60.48 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=25.7
Q ss_pred hhhccccCC--cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 114 MVYDLLHYG--KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 114 ~l~~~i~~g--~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+...+..+ ..++|.||+|+||||+++.++..+.
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 333444444 3599999999999999999998653
No 236
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.82 E-value=3.9e-05 Score=66.94 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=67.0
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc--CCCc-ccc-----CCCCCccccccccccCC-
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD--TSNE-IGG-----DGDIPHSAIGTARRMQV- 182 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~--~~~e-i~~-----~~~~~~~~~~~~~~~~~- 182 (254)
++.+..-+.+|+.++|.|+||+|||||+..++...... +..+.++. .+.+ +.. ...++...+ +...
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l----~~~~~ 132 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARR 132 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESSSCHHHHHHHHHHHHTTCCHHHH----HSCHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcCCC
Confidence 44444448899999999999999999998888554332 45665553 2211 100 001110000 0111
Q ss_pred -CChhHHHHHHHHHHHccCCCEEEEeCCCchHHH-H-HHHHHHh-CCce--EEEEEch
Q 025371 183 -PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-H-ACRSIAE-RGVM--LIGTAHG 234 (254)
Q Consensus 183 -~s~g~~~~~~l~~al~~~P~viilDEp~~~ld~-~-~~~~~~~-~G~~--vi~t~H~ 234 (254)
++.++.++...+.....++.+.+.|+|....+. . .+.++.. .|.. +|++-|-
T Consensus 133 ~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 133 DFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 345566666666666667888888888643332 2 1444443 3666 7776654
No 237
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.82 E-value=6.6e-05 Score=68.77 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=28.7
Q ss_pred hhhhccccCCc--EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 113 DMVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 113 ~~l~~~i~~g~--~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
..+...+..+. .++|.||+|+|||||+++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34555566665 5999999999999999999998643
No 238
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.82 E-value=3.4e-05 Score=70.48 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=51.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC-CC---C-CccccccccccCCCChhHHHHHHHHHH
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GD---I-PHSAIGTARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~-~~---~-~~~~~~~~~~~~~~s~g~~~~~~l~~a 196 (254)
+.+++++|++||||||++..|+..+... +.++..++....-... .. . ....+.........+...-.+.++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999888754 6777766543210000 00 0 000000000000011222234456666
Q ss_pred HccCCCEEEEeCCCc
Q 025371 197 ENHMPEVIIVDEIGT 211 (254)
Q Consensus 197 l~~~P~viilDEp~~ 211 (254)
...++|++|+|.|..
T Consensus 179 ~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGR 193 (443)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HhCCCCEEEEECCCc
Confidence 667899999999964
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.82 E-value=1.3e-05 Score=69.83 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC-cCCCCeEEEEc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS-DEFQKRVVIVD 158 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~-~~~~~~i~~~~ 158 (254)
+..++|.||+|+|||+|+++|+.... .. +..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 57899999999999999999998776 43 45555443
No 240
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.79 E-value=2.1e-05 Score=72.07 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=46.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHH---H
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV---E 197 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~a---l 197 (254)
++..+++.||||+||||+.++++..+... ..++.+...... .. .....++.+..+..| .
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~-------~~---------~~~~~~~~~~~f~~a~~~~ 123 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVY-------ST---------EIKKTEVLMENFRRAIGLR 123 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGC-------CS---------SSCHHHHHHHHHHHTEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHH-------HH---------hhhhhHHHHHHHHHHHhhh
Confidence 44689999999999999999999987642 233333222111 00 011122244555666 4
Q ss_pred ccCCCEEEEeCCCc
Q 025371 198 NHMPEVIIVDEIGT 211 (254)
Q Consensus 198 ~~~P~viilDEp~~ 211 (254)
...|.+|++||..+
T Consensus 124 ~~~~~il~iDEid~ 137 (456)
T 2c9o_A 124 IKETKEVYEGEVTE 137 (456)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred hcCCcEEEEechhh
Confidence 57899999999943
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.79 E-value=1.3e-05 Score=64.00 Aligned_cols=38 Identities=34% Similarity=0.588 Sum_probs=30.7
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
..+|.+++|+|++||||||+++.|+..+... +..+.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~ 47 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVL 47 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEe
Confidence 4467899999999999999999999988754 4455444
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.77 E-value=1.3e-05 Score=65.32 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=25.9
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..+|..++|+||+||||||+.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45788999999999999999999998764
No 243
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.76 E-value=1.2e-05 Score=66.12 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
+..++|+||+||||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 244
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.76 E-value=1.5e-05 Score=70.32 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=35.9
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.+.++.....+..++|+|+||+|||||++.|++.+.+. +.++.+++
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~ 91 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIA 91 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 34555567788899999999999999999999988765 45554443
No 245
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.76 E-value=1.6e-05 Score=70.45 Aligned_cols=35 Identities=20% Similarity=0.507 Sum_probs=28.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
+..++|+|+||||||||+|.|++...+. +.++.++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~ 108 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVL 108 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEE
Confidence 5689999999999999999999988765 4455444
No 246
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.75 E-value=1.1e-05 Score=65.97 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=32.5
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.+.+|.+++|+|++||||||+++.|++.+.+..+...++++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 36778899999999999999999999988744343445554
No 247
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.75 E-value=3.4e-05 Score=64.18 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.1
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHHHHHh
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
+-..+..|+.+++.|||||||||++..++-
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 334467799999999999999998876653
No 248
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.72 E-value=0.00022 Score=63.14 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|++|||||||+++|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999994
No 249
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.71 E-value=9.8e-05 Score=65.44 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
-.++++|+||+|||||++.|++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999865
No 250
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.71 E-value=7.2e-05 Score=60.83 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=59.3
Q ss_pred CCcEEEEECCCCCCHH-HHHHHHHhccCcCCCCeEEEEcCCCccccCCCC-CccccccccccCCCChhHHHHHHHHHHHc
Q 025371 121 YGKSILFVGRPGVGKT-TVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI-PHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKT-TLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~-~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.|++..+.||.||||| .|++++-..... +.++.++.......+...+ .+.... .......+.. ..+. ..
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~~D~R~~~~i~S~~g~~-~~A~~~~~~~-d~~~-----~~ 89 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYSSSFCTHDRNT-MEALPACLLR-DVAQ-----EA 89 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEETTCCCGGGSCCHHHHHH-SEEEEESSGG-GGHH-----HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccccCccchhhhhhccCCc-ccceecCCHH-HHHH-----hc
Confidence 4789999999999999 677777766543 5666665321110000011 111000 0000001111 1111 13
Q ss_pred cCCCEEEEeCCCchHH-HHHHHHHHhCCceEEEEEchhhH
Q 025371 199 HMPEVIIVDEIGTEAE-AHACRSIAERGVMLIGTAHGEWL 237 (254)
Q Consensus 199 ~~P~viilDEp~~~ld-~~~~~~~~~~G~~vi~t~H~~~~ 237 (254)
.+.|+|++||.---.+ .+.+..+.+.|+.||++..+.++
T Consensus 90 ~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 90 LGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp HTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred cCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4689999999944222 23356677889999999988663
No 251
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.69 E-value=5.1e-05 Score=66.52 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.7
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.-+.+|..++|.||+|||||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 33666778899999999999999999865
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.68 E-value=2.3e-05 Score=62.90 Aligned_cols=25 Identities=24% Similarity=0.589 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999998754
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.68 E-value=0.00027 Score=62.74 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
....++|.||+|+||||++++|+..+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998773
No 254
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.68 E-value=5e-05 Score=62.68 Aligned_cols=109 Identities=14% Similarity=0.166 Sum_probs=56.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC--CCCCccccccccccCCCChhHHHHHHHHHHH
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--GDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 197 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~--~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al 197 (254)
.+|.+.+++|+.||||||.+--++...... +.++.++.....-.+. ....+.... .......+. . ..+.. .
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~~g~~-~~a~~~~~~-~---~~~~~-~ 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSHNGLK-VKAVPVSAS-K---DIFKH-I 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEEECSSG-G---GGGGG-C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhhcCCe-eEEeecCCH-H---HHHHH-H
Confidence 457889999999999999876666544332 5666655311110000 000111000 000001111 0 01110 1
Q ss_pred ccCCCEEEEeCCCc--hHHHHHHHHHHhCCceEEEEEchh
Q 025371 198 NHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 198 ~~~P~viilDEp~~--~ld~~~~~~~~~~G~~vi~t~H~~ 235 (254)
..+.|+|++||.-. ....+.+..+.+.|+.||++.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEeccc
Confidence 12589999999954 223445666677899999999843
No 255
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.67 E-value=0.00038 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|++|+|||||++.+++...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998643
No 256
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.67 E-value=2.2e-05 Score=63.73 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 025371 124 SILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g 144 (254)
+++|+|++||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 257
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.67 E-value=4.1e-05 Score=66.39 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=34.6
Q ss_pred hccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC
Q 025371 116 YDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (254)
Q Consensus 116 ~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~ 160 (254)
+...+ +.+++++|++|+||||+++.|++.+.+. ++++.+++..
T Consensus 93 ~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D 135 (297)
T 1j8m_F 93 IPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGAD 135 (297)
T ss_dssp SCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred ccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 33344 7899999999999999999999998765 6777776643
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.66 E-value=9.4e-05 Score=64.47 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.4
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.-+++|+++.|.|++|||||||+..++..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999999999999988853
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.65 E-value=4.3e-05 Score=63.66 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=30.3
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
...|..++|.|++||||||+++.|+..+.. +..++..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 447889999999999999999999998875 4444443
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=3.2e-05 Score=61.04 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
No 261
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.63 E-value=2.5e-05 Score=63.24 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 025371 124 SILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g 144 (254)
.++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 262
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.62 E-value=0.00016 Score=76.51 Aligned_cols=87 Identities=18% Similarity=0.273 Sum_probs=51.4
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----CCCCccccccccccCCCChhHHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~----~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
+++|++++|.||+|+|||||..+++...... +.++.+++....+... ..++-..+ .+.....+++....+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~-G~~v~Fi~~e~~~~~l~a~~~G~dl~~l----~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNL----LCSQPDTGEQALEICD 1498 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHHHHHTTCCTTTC----EEECCSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEEcccccCHHHHHHcCCCchhc----eeecCChHHHHHHHHH
Confidence 6789999999999999999998887654433 7778877654322100 00000001 0111223333322222
Q ss_pred -HHHccCCCEEEEeCCC
Q 025371 195 -AVENHMPEVIIVDEIG 210 (254)
Q Consensus 195 -~al~~~P~viilDEp~ 210 (254)
.+-..+|++|++||..
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 2334789999999984
No 263
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.61 E-value=8e-05 Score=61.50 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=54.8
Q ss_pred cCCcEEEEECCCCCCHHH-HHHHHHhccCcCCCCeEEEEcCCCcccc--CCCCCccccccccccCCCChhHHHHHHHHHH
Q 025371 120 HYGKSILFVGRPGVGKTT-VMREIARVLSDEFQKRVVIVDTSNEIGG--DGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 196 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTT-Ll~~l~g~~~~~~~~~i~~~~~~~ei~~--~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~a 196 (254)
..|.+.+++|+.|||||| |++.+-.+... +.++.++.....-.+ ..-..+..... ....+.+... +...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D~R~~~~~I~Sr~G~~~-~a~~v~~~~d-----i~~~ 97 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAIDDRYHKEKVVSHNGNAI-EAINISKASE-----IMTH 97 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC-----------CBTTBCC-EEEEESSGGG-----GGGS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccCCcchhhhHHHhcCCce-eeEEeCCHHH-----HHHH
Confidence 457899999999999999 77777665443 444444321100000 00001111000 0000000000 0001
Q ss_pred HccCCCEEEEeCCCc--hHHHHHHHHHHhCCceEEEEEchh
Q 025371 197 ENHMPEVIIVDEIGT--EAEAHACRSIAERGVMLIGTAHGE 235 (254)
Q Consensus 197 l~~~P~viilDEp~~--~ld~~~~~~~~~~G~~vi~t~H~~ 235 (254)
+..++++|++||.-- ..-.+.+.++++.|+.||+..=+.
T Consensus 98 i~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 98 DLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDM 138 (219)
T ss_dssp CCTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESB
T ss_pred HhcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeeccc
Confidence 135889999999844 223344666778899988876443
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.61 E-value=2.1e-05 Score=68.00 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.+.+++|+|++|||||||++.|++++.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4568999999999999999999999875
No 265
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.61 E-value=3.6e-05 Score=59.83 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
...+|+|||||||||++.+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997433
No 266
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=2.4e-05 Score=76.75 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=47.2
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
+.+++.++|.||||||||||+++|++.+... ++.+.. .++ ... .+.......+..+..+..
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~----~i~v~~-~~l------~~~--------~~g~~~~~i~~~f~~a~~ 568 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKG-PEL------LTM--------WFGESEANVREIFDKARQ 568 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC----CCCCCC-SSS------TTC--------CTTTSSHHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCC----EEEEec-hHh------hhh--------hcCccHHHHHHHHHHHHh
Confidence 4577889999999999999999999987532 111111 111 000 011112334556677777
Q ss_pred cCCCEEEEeCCC
Q 025371 199 HMPEVIIVDEIG 210 (254)
Q Consensus 199 ~~P~viilDEp~ 210 (254)
..|.+|++||+.
T Consensus 569 ~~p~vl~iDEid 580 (806)
T 1ypw_A 569 AAPCVLFFDELD 580 (806)
T ss_dssp HCSBCCCCSSHH
T ss_pred cCCeEEEEEChh
Confidence 889999999974
No 267
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.59 E-value=3.5e-05 Score=62.03 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|+||||||||++.+++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999753
No 268
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.59 E-value=6.5e-05 Score=66.41 Aligned_cols=25 Identities=40% Similarity=0.453 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
+..++|.||+|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.59 E-value=3.9e-05 Score=61.35 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=25.9
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEE
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVV 155 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~ 155 (254)
..++|+|++|||||||++.|++.+... +.++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~ 38 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPG 38 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCcee
Confidence 478999999999999999999987643 44443
No 270
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.58 E-value=0.00024 Score=74.30 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=64.4
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc--C--CCCCccccccccccCCCChhHHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--D--GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~--~--~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
+.+|+.++|.||||+|||||+..++...... +.++.++.-...... . ..+...++. +...+........+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql~A~~lGvd~~~L~----i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL----CSQPDTGEQALEICD 803 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHHHHHTTCCGGGCE----EECCSSHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHHHHHHcCCChhheE----EecCCcHHHHHHHHH
Confidence 6789999999999999999999998876643 556666643221100 0 001111110 001112233332232
Q ss_pred HHH-ccCCCEEEEeCCCchH----------------HHH----HHHHH----HhCCceEEEEEchh
Q 025371 195 AVE-NHMPEVIIVDEIGTEA----------------EAH----ACRSI----AERGVMLIGTAHGE 235 (254)
Q Consensus 195 ~al-~~~P~viilDEp~~~l----------------d~~----~~~~~----~~~G~~vi~t~H~~ 235 (254)
+.. ..+|++||+|++..-. ... .+.++ .+.|+++|++.|-.
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~ 869 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 222 3689999999997522 011 13332 46799999999953
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.58 E-value=3.3e-05 Score=60.37 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997754
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.56 E-value=3.6e-05 Score=61.17 Aligned_cols=26 Identities=38% Similarity=0.779 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.|..++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 273
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.56 E-value=0.00012 Score=72.21 Aligned_cols=36 Identities=36% Similarity=0.637 Sum_probs=28.3
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
..++|.||+|+|||+++++|+...... +..++.++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEec
Confidence 479999999999999999999987543 344555543
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.56 E-value=4.8e-05 Score=60.84 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=24.8
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
....+.+++|+|++||||||+.+.|+..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456788999999999999999999986
No 275
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=2.8e-05 Score=68.24 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.0
Q ss_pred hhhhhccccCCcE--EEEECCCCCCHHHHHHHHHhccCc
Q 025371 112 IDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 112 ~~~l~~~i~~g~~--~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.+.++..++.|+. +++.||+|+||||+++++++.+.+
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5566677888877 999999999999999999998764
No 276
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.55 E-value=0.00041 Score=60.12 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=25.5
Q ss_pred hhhccccCCc---EEEEECCCCCCHHHHHHHHHhccC
Q 025371 114 MVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 114 ~l~~~i~~g~---~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+...+..|. .+++.||+|+||||++++++..+.
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3444455543 577788899999999999998764
No 277
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.52 E-value=4.5e-05 Score=68.70 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=25.3
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHh
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
.+..|..++|+|+||+|||||+|+|+|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 467889999999999999999999999
No 278
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=0.00036 Score=68.79 Aligned_cols=103 Identities=24% Similarity=0.372 Sum_probs=53.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcC------CCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHH
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 195 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~------~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~ 195 (254)
...++|+||+|+||||+++.++..+... .+..++.++....+... . . ........+..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~------~------~-~g~~~~~l~~~~~~ 257 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA------K------Y-RGEFEERLKAVIQE 257 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccC------c------c-chHHHHHHHHHHHH
Confidence 3469999999999999999999877431 13445554432211000 0 0 00111222334444
Q ss_pred HHcc-CCCEEEEeCCCch---------HHHH-HHHHHHhCC-ceEEEEEchhhH
Q 025371 196 VENH-MPEVIIVDEIGTE---------AEAH-ACRSIAERG-VMLIGTAHGEWL 237 (254)
Q Consensus 196 al~~-~P~viilDEp~~~---------ld~~-~~~~~~~~G-~~vi~t~H~~~~ 237 (254)
+... .|.+|++||...- .+.. .+..+.+.| ..+|.++.....
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY 311 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 4433 6789999999652 1221 245555555 467777665543
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.52 E-value=4.6e-05 Score=61.65 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..+++|+|++||||||+.+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 280
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00039 Score=64.68 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=27.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
...++|.||+|+||||++++++..+ +..++.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeC
Confidence 3589999999999999999999876 334555543
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.49 E-value=7.7e-05 Score=72.89 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=49.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHHHHHcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 199 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~~ 199 (254)
.+...+++.||||||||.+.++++..... ..+.+.. .++. ...+......-+..+..|...
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~----~f~~v~~-~~l~--------------s~~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKG-PELL--------------TMWFGESEANVREIFDKARQA 569 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTC----EEEECCH-HHHH--------------TTTCSSCHHHHHHHHHHHHTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCC----ceEEecc-chhh--------------ccccchHHHHHHHHHHHHHHc
Confidence 34457999999999999999999997643 2333221 1111 001112334567788888889
Q ss_pred CCCEEEEeCCCc
Q 025371 200 MPEVIIVDEIGT 211 (254)
Q Consensus 200 ~P~viilDEp~~ 211 (254)
.|.+|++||..+
T Consensus 570 ~P~IifiDEiDs 581 (806)
T 3cf2_A 570 APCVLFFDELDS 581 (806)
T ss_dssp CSEEEECSCGGG
T ss_pred CCceeechhhhH
Confidence 999999999954
No 282
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.48 E-value=0.0003 Score=61.85 Aligned_cols=36 Identities=36% Similarity=0.557 Sum_probs=27.6
Q ss_pred hhhhccccCCc---EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 113 DMVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 113 ~~l~~~i~~g~---~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+.+...+..|. .++|.||+|+||||+++.++..+..
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444455554 5899999999999999999987754
No 283
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.48 E-value=0.00035 Score=67.07 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=60.8
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCC-CCeEEEEcCCCcccc--------CCCCCccc-cc-cccccCCC-Chh
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGG--------DGDIPHSA-IG-TARRMQVP-EPS 186 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~-~~~i~~~~~~~ei~~--------~~~~~~~~-~~-~~~~~~~~-s~g 186 (254)
+..+.+++|+|++|+|||||++.|++...+.. .+.+ .+......+ .....+.. +. ......+. ..|
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 56678999999999999999999997654310 1111 110000000 00000000 00 00001110 111
Q ss_pred -HHH-HHHHHHHHccCCCEEEEeCCCchHHHHH---HHHHHhCCceEEEEEchhhHH
Q 025371 187 -LQH-KVMIEAVENHMPEVIIVDEIGTEAEAHA---CRSIAERGVMLIGTAHGEWLE 238 (254)
Q Consensus 187 -~~~-~~~l~~al~~~P~viilDEp~~~ld~~~---~~~~~~~G~~vi~t~H~~~~~ 238 (254)
... ......+...+.-++++| ++.+.+... +..+...+..+|++.|-.+..
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 222 223333445688899999 777666544 444556688888888876543
No 284
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.47 E-value=0.00015 Score=62.82 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=25.7
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
...+..++|.||+|+|||+++++|....+.
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 455678999999999999999999987643
No 285
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.47 E-value=0.00029 Score=73.66 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=63.8
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCcccc--C--CCCCccccccccccCCCChhHHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--D--GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~--~--~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
+.+|..+.|.||||||||||+..++...... +..+++++....... . ..+...++. -.. .+..++....+.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~a~~lGvd~~~L~---i~~-~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLL---CSQ-PDTGEQALEICD 454 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHHHHHTTCCGGGCE---EEC-CSSHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHHHHHcCCCHHHeE---EcC-CCCHHHHHHHHH
Confidence 5689999999999999999988877655433 667777754321110 0 001111111 011 122333332222
Q ss_pred H-HHccCCCEEEEeCCCchHH----------------H----HHHHHH----HhCCceEEEEEchh
Q 025371 195 A-VENHMPEVIIVDEIGTEAE----------------A----HACRSI----AERGVMLIGTAHGE 235 (254)
Q Consensus 195 ~-al~~~P~viilDEp~~~ld----------------~----~~~~~~----~~~G~~vi~t~H~~ 235 (254)
+ +...+|++|++|.+..-.. . ..+..+ .+.|+++|++.|-.
T Consensus 455 ~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 2 2246899999999865211 1 113333 46699999999864
No 286
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.47 E-value=5.9e-05 Score=59.38 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
++..++|+|++|+|||||++.+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999999864
No 287
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00022 Score=61.25 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=26.1
Q ss_pred hhhccccCCc--EEEEECCCCCCHHHHHHHHHhccC
Q 025371 114 MVYDLLHYGK--SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 114 ~l~~~i~~g~--~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+...+..+. .++|.||+|+||||+++.++..+.
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3444455543 399999999999999999998763
No 288
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.46 E-value=0.00025 Score=68.94 Aligned_cols=35 Identities=31% Similarity=0.650 Sum_probs=27.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
.+++.||+|+|||++.++|+...... +..++.++-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~ 557 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-EESMIRIDM 557 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEec
Confidence 69999999999999999999987432 444555543
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.46 E-value=7.1e-05 Score=59.48 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
|..++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998665
No 290
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.46 E-value=0.00063 Score=59.21 Aligned_cols=25 Identities=44% Similarity=0.648 Sum_probs=22.4
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|.||+|+||||++++++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988754
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.45 E-value=7.6e-05 Score=59.41 Aligned_cols=35 Identities=31% Similarity=0.256 Sum_probs=27.9
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
..++|+|++|||||||+..|+..+... +.++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEE
Confidence 368999999999999999999987653 55555543
No 292
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.44 E-value=9.2e-05 Score=59.71 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.6
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
..++|.||+|+|||||+++++...... +..+.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 689999999999999999999887643 4445444
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.44 E-value=6.9e-05 Score=59.74 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
..+..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999998765
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.44 E-value=7e-05 Score=58.27 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=18.6
Q ss_pred cEEEEECCCCCCHHHHHHHH
Q 025371 123 KSILFVGRPGVGKTTVMREI 142 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l 142 (254)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 295
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.42 E-value=0.00057 Score=58.93 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
...++|.||+|+||||++++++....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998653
No 296
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.00041 Score=67.37 Aligned_cols=31 Identities=39% Similarity=0.648 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.+++.||+|+|||+++++|+..+. ..++.++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~ 520 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG----IELLRFD 520 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT----CEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc----CCEEEEe
Confidence 699999999999999999999873 3455554
No 297
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.41 E-value=0.00013 Score=58.90 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+|..++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987764
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.40 E-value=8.6e-05 Score=58.82 Aligned_cols=27 Identities=44% Similarity=0.608 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
..+.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999655
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.40 E-value=9.4e-05 Score=58.74 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+.+++|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997654
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.40 E-value=7.1e-05 Score=63.22 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+||||||||||.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998654
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.39 E-value=0.00011 Score=59.12 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.|..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.39 E-value=9.2e-05 Score=58.22 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=20.4
Q ss_pred cEEEEECCCCCCHHHHHHHHHh
Q 025371 123 KSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g 144 (254)
.+++|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 303
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.38 E-value=7.8e-05 Score=66.14 Aligned_cols=36 Identities=22% Similarity=0.618 Sum_probs=30.3
Q ss_pred hhhhhccccCCcE--EEEECCCCCCHHHHHHHHHhccC
Q 025371 112 IDMVYDLLHYGKS--ILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 112 ~~~l~~~i~~g~~--~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
++.++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4556666788876 99999999999999999998764
No 304
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.38 E-value=0.00012 Score=65.53 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
.+.+++|+|+|||||||+++.|+...... +.+++++|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 45689999999999999999999876543 566666654
No 305
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.38 E-value=0.00019 Score=66.04 Aligned_cols=96 Identities=20% Similarity=0.324 Sum_probs=50.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCC------CCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHH
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEF------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~------~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
...+++|+||||+||||++++|+..+.... +..++.++.. . ...+. ...+.+..+.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------------~--~~~g~--~e~~~~~~~~ 261 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------------T--KYRGE--FEDRLKKVMD 261 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------------c--cccch--HHHHHHHHHH
Confidence 345799999999999999999998874310 1112211111 0 00000 0012234455
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-HHHHHhCC-ceEEEEEchhhH
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-CRSIAERG-VMLIGTAHGEWL 237 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-~~~~~~~G-~~vi~t~H~~~~ 237 (254)
.+....|.+|++| ...+... +..+.+.| ..+|+++.....
T Consensus 262 ~~~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 262 EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEY 303 (468)
T ss_dssp HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTT
T ss_pred HHHhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence 5555689999999 3334333 33444556 467777766553
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.37 E-value=7.7e-05 Score=58.90 Aligned_cols=24 Identities=42% Similarity=0.729 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998654
No 307
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.36 E-value=0.00056 Score=64.53 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
.+..++|.|++|+||||+++.++..+... +.++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEe
Confidence 46789999999999999999999877643 5555544
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.36 E-value=8.9e-05 Score=59.52 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998664
No 309
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.36 E-value=6.8e-05 Score=63.17 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.7
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..+..++|+|+|||||||+.+.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456899999999999999999998765
No 310
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.00055 Score=66.44 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|+||+|+||||+++.++..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998764
No 311
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.32 E-value=0.00015 Score=66.03 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=30.8
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~ 160 (254)
.+++++|++|+||||+++.|++.+... +.++.+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 489999999999999999999988754 6777776543
No 312
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00011 Score=58.68 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=24.9
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++.+++|+|++||||||+.+.|+..+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44677899999999999999999997653
No 313
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=57.79 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=26.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
.++|.|++||||||+.+.|+..+... +..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 68999999999999999999877532 44445543
No 314
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.31 E-value=0.0013 Score=59.87 Aligned_cols=46 Identities=26% Similarity=0.253 Sum_probs=34.2
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
++.+..-+.+|+.++|.|+||+|||||+..++.......+..+.++
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3333334788999999999999999999998876654325556654
No 315
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.31 E-value=0.00064 Score=56.67 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCcEEEEECCCCCCHHHHH-HHHHhccCcCCCCeEEEEcCCCcccc-CCCCCccccccccccCCCChhHHHHHHHHHHHc
Q 025371 121 YGKSILFVGRPGVGKTTVM-REIARVLSDEFQKRVVIVDTSNEIGG-DGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 198 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl-~~l~g~~~~~~~~~i~~~~~~~ei~~-~~~~~~~~~~~~~~~~~~s~g~~~~~~l~~al~ 198 (254)
.|.+.+++|+.||||||.+ +.+.+.... +.++.++.-...-.+ .....+.... .....+.+... .+..+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D~Ryg~~i~sr~G~~-~~a~~i~~~~d----i~~~~-- 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKDTRYSSSFCTHDRNT-MEALPACLLRD----VAQEA-- 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTCCCC------------CEEEEESSGGG----GHHHH--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCCccchHHHHhhcCCe-eEEEecCCHHH----HHHHh--
Confidence 5889999999999999765 444444332 556655431111000 1001111110 00111111111 12222
Q ss_pred cCCCEEEEeCCCchHHHHH-HHHHHhCCceEEEEEchhh
Q 025371 199 HMPEVIIVDEIGTEAEAHA-CRSIAERGVMLIGTAHGEW 236 (254)
Q Consensus 199 ~~P~viilDEp~~~ld~~~-~~~~~~~G~~vi~t~H~~~ 236 (254)
.+.|+|++||.---.+... +..+.+.|+.||++.++.+
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGT 127 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBC
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccc
Confidence 6789999999955434333 4445568999999998844
No 316
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.30 E-value=0.00014 Score=59.39 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.7
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
...+|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 488999999999999999986433
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=0.00017 Score=65.58 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
++++++++|++||||||++..|++.+.+. +.++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeec
Confidence 67899999999999999999999999875 677777654
No 318
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.29 E-value=0.00048 Score=62.99 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6999999999999999999884
No 319
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.29 E-value=0.00015 Score=60.26 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.1
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
-..+.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4557799999999999999999999854
No 320
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.28 E-value=0.00013 Score=58.87 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+||+|||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987654
No 321
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.28 E-value=0.00022 Score=54.77 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.0
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
...+..++|.||+|+|||++.++|......
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 456778999999999999999999987654
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.27 E-value=0.00015 Score=57.66 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
+..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.27 E-value=0.00015 Score=58.64 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.6
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..|..++|+|++||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998654
No 324
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.27 E-value=0.00016 Score=59.18 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCCHHHHHHHHHh
Q 025371 122 GKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
+.+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
No 325
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.26 E-value=0.0007 Score=71.75 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=63.9
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCCCccccC----CCCCccccccccccCCCChhHHHHHHHH
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~~ei~~~----~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
+.+|..+.|.||||+|||||+..++...... +..+++++........ ..+...++.. .. .....+....+.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~a~~lGvd~~~L~I---~~-~~~~e~il~~~~ 454 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIYARKLGVDIDNLLC---SQ-PDTGEQALEICD 454 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHHHHHTTCCTTTCEE---EC-CSSHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHHHHHcCCCHHHeEE---eC-CCCHHHHHHHHH
Confidence 6789999999999999999998887665433 5677777543221100 0011111100 01 112222222222
Q ss_pred HHH-ccCCCEEEEeCCCchH----------------HH----HHHHHH----HhCCceEEEEEchh
Q 025371 195 AVE-NHMPEVIIVDEIGTEA----------------EA----HACRSI----AERGVMLIGTAHGE 235 (254)
Q Consensus 195 ~al-~~~P~viilDEp~~~l----------------d~----~~~~~~----~~~G~~vi~t~H~~ 235 (254)
+.. ..+|++|++|.+..-. .. ..++.+ .+.|+++|++.|..
T Consensus 455 ~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 222 4689999999985421 11 113333 46799999999864
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00014 Score=62.54 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.9
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|+|||||||||+.+.|+...+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999987653
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.00017 Score=56.98 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 328
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.00011 Score=58.75 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=24.8
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..+.+++|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999998654
No 329
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.00017 Score=59.07 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998653
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.22 E-value=0.00023 Score=56.86 Aligned_cols=33 Identities=33% Similarity=0.514 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
.++|.|++||||||+.+.|+..+... +..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEe
Confidence 58999999999999999999877432 4444443
No 331
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.22 E-value=0.00019 Score=58.21 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.1
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
..|..++|+|++||||||+.+.|+..+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987653
No 332
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.21 E-value=0.00015 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999863
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00013 Score=57.59 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=19.0
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999987654
No 334
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.20 E-value=6e-05 Score=61.20 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988764
No 335
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.19 E-value=0.0002 Score=57.45 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Q 025371 122 GKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999986
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.18 E-value=0.00025 Score=57.23 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+.+++|+|++||||||+.+.|+..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999997653
No 337
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.17 E-value=0.00016 Score=62.55 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=22.0
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
..++|+|+||+|||||++.|+|.-
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999863
No 338
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.16 E-value=0.00025 Score=55.47 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
++++|+|++||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998654
No 339
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.16 E-value=0.00022 Score=58.74 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|+|++||||||+.+.|+..+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999997553
No 340
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.15 E-value=0.0002 Score=59.88 Aligned_cols=26 Identities=35% Similarity=0.541 Sum_probs=22.6
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..+++|.||+||||||+.+.|+..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999996543
No 341
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.14 E-value=0.00024 Score=57.85 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00025 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987553
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.0002 Score=56.83 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=22.0
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998654
No 344
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.11 E-value=0.0028 Score=55.42 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=27.5
Q ss_pred hhhccccCCc---EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 114 MVYDLLHYGK---SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 114 ~l~~~i~~g~---~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.+...+..|+ .+++.||+|+||||+.+.++..+..
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3444466654 5999999999999999999987653
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.10 E-value=0.00027 Score=55.24 Aligned_cols=25 Identities=52% Similarity=0.761 Sum_probs=21.9
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998653
No 346
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.09 E-value=0.00052 Score=57.75 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=30.4
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
....+..++|.||+|+|||+++++|+...... +..++.++
T Consensus 25 ~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~ 64 (265)
T 2bjv_A 25 LAPLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLN 64 (265)
T ss_dssp HTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEE
T ss_pred HhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEe
Confidence 34556789999999999999999999887643 33445544
No 347
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.09 E-value=0.00025 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998654
No 348
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.00025 Score=61.90 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=28.9
Q ss_pred hhhhhccccCC--cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 112 IDMVYDLLHYG--KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 112 ~~~l~~~i~~g--~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+.+...+..| ..++|.||+|+||||+++++++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44555556666 4599999999999999999999864
No 349
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.08 E-value=0.0003 Score=58.39 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5899999999999999999997654
No 350
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.08 E-value=0.00033 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.+++|+|++||||||+.+.|+..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999998754
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.07 E-value=0.00024 Score=58.25 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|+|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999997654
No 352
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.07 E-value=0.0046 Score=57.13 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.8
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
-+.+|+.++|.|+||+|||||+..++-......+..+.++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 3778999999999999999999888765543224556555
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.07 E-value=0.00035 Score=57.79 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=25.3
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+....+++|+|||||||+|..+.|+..+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 355667899999999999999999997654
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.06 E-value=0.00032 Score=55.76 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 355
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=0.00028 Score=59.92 Aligned_cols=24 Identities=33% Similarity=0.682 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998753
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.06 E-value=0.00034 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 357
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.06 E-value=0.00033 Score=62.83 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.5
Q ss_pred hhhccccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 114 MVYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 114 ~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
++..-+.+|+.++|+||+|+|||||++.|++.+..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 45555888999999999999999999999998754
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.05 E-value=0.00034 Score=59.09 Aligned_cols=26 Identities=42% Similarity=0.719 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|+|++||||||+.+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.03 E-value=0.00032 Score=55.63 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.0
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987543
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.02 E-value=0.00038 Score=53.48 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 361
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.01 E-value=0.00052 Score=61.07 Aligned_cols=43 Identities=9% Similarity=0.107 Sum_probs=28.3
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHh
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
+..|+++..+.. ......+.+ ...+|+|+|||||||++-+|.=
T Consensus 5 l~~L~l~nFr~~----~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 5 LKEIRMNNFKSH----VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEEEETTE----EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred EeEEEEEccccc----cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 345666554432 122222333 5799999999999999999873
No 362
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00039 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|||||||++.+++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999865
No 363
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.99 E-value=0.00043 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 364
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.97 E-value=0.00046 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 365
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.97 E-value=0.00041 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.97 E-value=0.00046 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 120 HYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 120 ~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
..+..++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998654
No 367
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00048 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 368
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.97 E-value=0.00015 Score=67.54 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=33.7
Q ss_pred EEEEEEEECceeecchhhhhccccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 97 IVGLTCRVGRAVSGHIDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 97 ~~~l~ir~~~~~~~~~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..|.++..+. .+.+...+.+| +.+|+|+||||||||+.+|..+..
T Consensus 40 l~~L~i~nf~~----~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 40 LSRLEIRNLAT----ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp CCEEEEESBTT----BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeeeecccccc----eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34566665442 34455557777 899999999999999999977643
No 369
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.96 E-value=0.00047 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00045 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|+|++||||||+.+.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998653
No 371
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.96 E-value=0.00048 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999865
No 372
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.95 E-value=0.00052 Score=60.45 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|+||+|||||||...|+..++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345899999999999999999998764
No 373
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.93 E-value=0.00034 Score=57.39 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=24.6
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+++...+++.||+|+||||+..+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445799999999999999999999873
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.93 E-value=0.00047 Score=57.83 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+++|+|++||||||+.+.|+..+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 699999999999999999988654
No 375
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.93 E-value=0.00051 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 376
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.92 E-value=0.00053 Score=52.69 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 377
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.92 E-value=0.00022 Score=54.59 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.0
Q ss_pred ccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 119 LHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 119 i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
...+..++|.||+|+|||++.++|....
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4566789999999999999999988754
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.92 E-value=0.00051 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
-+++|+|++||||||+.+.|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999763
No 379
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.91 E-value=0.00056 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 380
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.90 E-value=0.00056 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 381
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.90 E-value=0.00056 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 382
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.90 E-value=0.00073 Score=55.57 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
.|..+.|.|++||||||+++.|+..+... +..+++...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~~ 42 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTRE 42 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcccccC
Confidence 47789999999999999999999887653 444554433
No 383
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.90 E-value=0.00053 Score=56.46 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.90 E-value=0.00051 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 385
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.89 E-value=0.00058 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 386
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.00063 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.+..++|.|++||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999997653
No 387
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.88 E-value=0.00058 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 48999999999999999998644
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.88 E-value=0.0005 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 389
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.88 E-value=0.00049 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999753
No 390
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.87 E-value=0.00058 Score=55.71 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.|..++|+||||||||||...|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998754
No 391
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.87 E-value=0.00058 Score=55.90 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+++|+|||||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998654
No 392
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.87 E-value=0.00074 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
..-.++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 393
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.86 E-value=0.00045 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 48999999999999999998754
No 394
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.86 E-value=0.00052 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 395
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.85 E-value=0.00066 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999964
No 396
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.85 E-value=0.0014 Score=63.75 Aligned_cols=95 Identities=23% Similarity=0.381 Sum_probs=50.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcCC------CCeEEEEcCCCccccCCCCCccccccccccCCCChhHHHHHHHH
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDEF------QKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIE 194 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~------~~~i~~~~~~~ei~~~~~~~~~~~~~~~~~~~~s~g~~~~~~l~ 194 (254)
...+++|+||+|+||||+.++|+..+.... +..++.++. +. ...+ ....+.+..+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g~-~~~G--~~e~~l~~~~~ 261 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------GT-KYRG--EFEDRLKKVMD 261 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------cc-cccc--hHHHHHHHHHH
Confidence 455899999999999999999998874310 111111111 00 0000 00112344556
Q ss_pred HHHccCCCEEEEeCCCchHHHHH-HHHHHhCC-ceEEEEEchhh
Q 025371 195 AVENHMPEVIIVDEIGTEAEAHA-CRSIAERG-VMLIGTAHGEW 236 (254)
Q Consensus 195 ~al~~~P~viilDEp~~~ld~~~-~~~~~~~G-~~vi~t~H~~~ 236 (254)
.+....|-+|++| ...|... +..+.+.| ..+|.++....
T Consensus 262 ~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 262 EIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDE 302 (758)
T ss_dssp HHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTT
T ss_pred HHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHH
Confidence 6666789999999 3334333 33344455 46777776555
No 397
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.85 E-value=0.00056 Score=61.54 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.5
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHHHHHhc
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
+...+..+..++|+|+||+|||||+++|++.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3334667788999999999999999999987
No 398
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.84 E-value=0.00061 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998763
No 399
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.83 E-value=0.00056 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999999864
No 400
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.83 E-value=0.0053 Score=55.27 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.2
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|+||||||||||...|+..++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4689999999999999999998664
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.83 E-value=0.0007 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.82 E-value=0.00064 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 403
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.82 E-value=0.00057 Score=60.86 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|+||||||||+|.|++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 389999999999999999999764
No 404
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.81 E-value=0.00072 Score=53.46 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999863
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.81 E-value=0.00078 Score=59.60 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=28.2
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVD 158 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~ 158 (254)
..++|+|++|+|||||++.|+..+... +.++.+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEe
Confidence 479999999999999999999877543 66666554
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.81 E-value=0.00065 Score=59.90 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|+||+|||||||.+.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 407
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.80 E-value=0.00074 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 408
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.80 E-value=0.00059 Score=58.27 Aligned_cols=26 Identities=42% Similarity=0.770 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|.||+|+||||++++++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998774
No 409
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.80 E-value=0.00072 Score=56.68 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++|+|.+|+|||||++.|++.-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 599999999999999999998643
No 410
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.80 E-value=0.00076 Score=51.97 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.6
Q ss_pred cEEEEECCCCCCHHHHHHHHHhc
Q 025371 123 KSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
-.++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999764
No 411
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.79 E-value=0.00069 Score=61.67 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|+||+|||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999975
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.79 E-value=0.00077 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 413
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.78 E-value=0.00084 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.78 E-value=0.00073 Score=59.18 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.78 E-value=0.0008 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999754
No 416
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.77 E-value=0.00077 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 417
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.77 E-value=0.008 Score=52.05 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=26.8
Q ss_pred hhhhhccccCCc--EEEEECCCCCCHHHHHHHHHhc
Q 025371 112 IDMVYDLLHYGK--SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 112 ~~~l~~~i~~g~--~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.+.+...++.|+ .+++.||+|+||||+.++++..
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 344555566654 7999999999999999999863
No 418
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.77 E-value=0.00081 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 419
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.77 E-value=0.0029 Score=57.80 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=31.5
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
-+.+|+.++|.|+||+|||||+..++...... +..+.++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~f 231 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLH 231 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEE
Confidence 37889999999999999999998887665433 5666665
No 420
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.77 E-value=0.00087 Score=58.46 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|+||||||||||...|+..++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 34789999999999999999997654
No 421
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.76 E-value=0.00067 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999854
No 422
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.76 E-value=0.00098 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|+|++|||||||++.|++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999999998754
No 423
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.76 E-value=0.00063 Score=59.83 Aligned_cols=28 Identities=36% Similarity=0.735 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
++..++|.||+|+||||++++++..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3458999999999999999999998764
No 424
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.76 E-value=0.00083 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 425
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.75 E-value=0.00076 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 426
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.75 E-value=0.0004 Score=60.42 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=26.9
Q ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 117 DLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 117 ~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
..+..+..++|.||+|+|||||+++++..+..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33455778999999999999999999997753
No 427
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.75 E-value=0.00073 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|.+|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 428
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.74 E-value=0.00089 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 429
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.74 E-value=0.00074 Score=59.67 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
++..++|.||||+||||+.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998763
No 430
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.74 E-value=0.00089 Score=52.17 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 431
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.0009 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhccC
Q 025371 124 SILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
.++++|++|+|||||++.+.+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987543
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.00083 Score=57.50 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=20.8
Q ss_pred cEEEEECCCCCCHHHHHHHHHhc
Q 025371 123 KSILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
..++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999973
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.71 E-value=0.00078 Score=57.67 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred cEEEEECCCCCCHHHHHHHHHh
Q 025371 123 KSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g 144 (254)
.+++|+|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 434
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.70 E-value=0.00069 Score=53.46 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999875
No 435
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.69 E-value=0.001 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999653
No 436
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.69 E-value=0.00089 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999973
No 437
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.69 E-value=0.0009 Score=52.47 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 438
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.69 E-value=0.00099 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 439
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.68 E-value=0.001 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 440
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.67 E-value=0.0012 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHhccCc
Q 025371 124 SILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
.++|+|++|+|||||++.+.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987654
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.67 E-value=0.0011 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999754
No 442
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.66 E-value=0.0011 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 443
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.65 E-value=0.003 Score=57.46 Aligned_cols=39 Identities=28% Similarity=0.571 Sum_probs=31.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcCC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 160 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~~ 160 (254)
..+++++|++|+||||+...|+..+....+.++..++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 357899999999999999999988764336777777654
No 444
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0019 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred cccCCcEEEEECCCCCCHHHHHHHHH
Q 025371 118 LLHYGKSILFVGRPGVGKTTVMREIA 143 (254)
Q Consensus 118 ~i~~g~~~~i~G~~GsGKTTLl~~l~ 143 (254)
=+++|+.+.|.|+||+|||||+.-++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999999987654
No 445
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.65 E-value=0.00095 Score=55.95 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.|++.-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999754
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.64 E-value=0.001 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 447
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.63 E-value=0.00056 Score=58.93 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.8
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+-+++|.||+||||||+.+.|+..+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999998654
No 448
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.63 E-value=0.001 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.3
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
-.++++|++|+|||||++.+.+-.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
No 449
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.63 E-value=0.0011 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|.+|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 450
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.63 E-value=0.00057 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.4
Q ss_pred CcEEEEECCCCCCHHHHHHHHHh
Q 025371 122 GKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
.-.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999984
No 451
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.63 E-value=0.0012 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.3
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
..++|+||||||||||...|+...+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 4789999999999999999998754
No 452
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.62 E-value=0.0011 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5999999999999999999874
No 453
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.62 E-value=0.0012 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 454
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.62 E-value=0.0012 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 455
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.61 E-value=0.0012 Score=52.69 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 456
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.61 E-value=0.0011 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 457
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.60 E-value=0.0011 Score=57.26 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 458
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.60 E-value=0.0007 Score=54.37 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=24.5
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHh
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g 144 (254)
++.++...+.. .++++|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 44444444444 589999999999999999986
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.59 E-value=0.0012 Score=59.61 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
....++|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998754
No 460
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.59 E-value=0.0013 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999877764
No 461
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.59 E-value=0.0011 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|.+|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 462
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.58 E-value=0.0013 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 463
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.58 E-value=0.0012 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEECCCCCCHHHHHHHHHhcc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
..++|+|.+|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 369999999999999999999853
No 464
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.58 E-value=0.0012 Score=60.38 Aligned_cols=26 Identities=42% Similarity=0.787 Sum_probs=23.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
..+++.||+|+||||+.++|+..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999999998754
No 465
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 59999999999999999999754
No 466
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.58 E-value=0.0071 Score=49.03 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=26.0
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEE
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIV 157 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~ 157 (254)
...+.+.+++|.||||..-.++-..-- .|.++.++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g-~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG-HGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 457889999999999998777643332 27777766
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.57 E-value=0.0013 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 468
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.57 E-value=0.00094 Score=56.70 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998764
No 469
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.57 E-value=0.0012 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 025371 124 SILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g 144 (254)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
No 470
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.57 E-value=0.0015 Score=54.68 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=25.7
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
.|..+.|.|++||||||+++.|+..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47789999999999999999999887653
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.57 E-value=0.0014 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998643
No 472
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0012 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 473
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.56 E-value=0.0013 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34789999999999999999998653
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.56 E-value=0.0014 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 59999999999999999998754
No 475
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.55 E-value=0.0014 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 476
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.0014 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+--
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998753
No 477
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.54 E-value=0.0017 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.3
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
-.++|+|.+|||||||++.++.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999976543
No 478
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0014 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+--
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998653
No 479
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.53 E-value=0.0019 Score=53.93 Aligned_cols=35 Identities=37% Similarity=0.604 Sum_probs=29.5
Q ss_pred cEEEEECCCCCCHHHHHHHHHhccCcCCCCeEEEEcC
Q 025371 123 KSILFVGRPGVGKTTVMREIARVLSDEFQKRVVIVDT 159 (254)
Q Consensus 123 ~~~~i~G~~GsGKTTLl~~l~g~~~~~~~~~i~~~~~ 159 (254)
-+++++|..|+||||+++.|+..+. . +.++..++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeC
Confidence 4789999999999999999998777 3 777777763
No 480
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.53 E-value=0.0013 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 481
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.52 E-value=0.0014 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999953
No 482
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.51 E-value=0.0013 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|.+|+|||||+++|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.51 E-value=0.0012 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 484
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.51 E-value=0.0015 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++++|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999999754
No 485
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0014 Score=54.37 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCCHHHHHHHHHhccC
Q 025371 122 GKSILFVGRPGVGKTTVMREIARVLS 147 (254)
Q Consensus 122 g~~~~i~G~~GsGKTTLl~~l~g~~~ 147 (254)
+..++|.|+.||||||+++.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998764
No 486
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.50 E-value=0.0018 Score=53.28 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=25.6
Q ss_pred CCcEEEEECCCCCCHHHHHHHHHhccCcC
Q 025371 121 YGKSILFVGRPGVGKTTVMREIARVLSDE 149 (254)
Q Consensus 121 ~g~~~~i~G~~GsGKTTLl~~l~g~~~~~ 149 (254)
.|..+.+.|++||||||.++.|+..+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47789999999999999999999887653
No 487
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.50 E-value=0.0011 Score=61.49 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=28.2
Q ss_pred hhccccCCcEEEEECCCCCCHHHHHHHHHhccCc
Q 025371 115 VYDLLHYGKSILFVGRPGVGKTTVMREIARVLSD 148 (254)
Q Consensus 115 l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~~~ 148 (254)
+...+..|..++|.||||+|||+|+++|+.....
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 3334566789999999999999999999998743
No 488
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.50 E-value=0.0014 Score=52.58 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 489
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.50 E-value=0.0012 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 490
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.49 E-value=0.001 Score=59.14 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998754
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.49 E-value=0.0015 Score=52.18 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|.+|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 492
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 493
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.48 E-value=0.0016 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 494
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.47 E-value=0.0014 Score=56.65 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.8
Q ss_pred hhhhhccccCCcEEEEECCCCCCHHHHHHHHHhcc
Q 025371 112 IDMVYDLLHYGKSILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 112 ~~~l~~~i~~g~~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
++.+...+..|..++|.||.|+|||||++.++...
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 34444446567899999999999999999998754
No 495
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.47 E-value=0.0015 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHhc
Q 025371 124 SILFVGRPGVGKTTVMREIARV 145 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~ 145 (254)
.++|+|++|+|||||++.+++.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999875
No 496
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.46 E-value=0.0015 Score=52.67 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
No 497
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.46 E-value=0.0011 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998765
No 498
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.46 E-value=0.0018 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|++|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999998643
No 499
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.45 E-value=0.0015 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHhcc
Q 025371 124 SILFVGRPGVGKTTVMREIARVL 146 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g~~ 146 (254)
.++|+|+||+|||||+++|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
No 500
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.44 E-value=0.0019 Score=51.49 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHh
Q 025371 124 SILFVGRPGVGKTTVMREIAR 144 (254)
Q Consensus 124 ~~~i~G~~GsGKTTLl~~l~g 144 (254)
.++|+|++|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999999975
Done!