BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025372
         (254 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A0S|A Chain A, Crystal Structure Of 6-Pyruvoyl Tetrahydropterin Synthase
           (Ptps) From Plasmodium Vivax At 2.2 A Resolution
 pdb|2A0S|B Chain B, Crystal Structure Of 6-Pyruvoyl Tetrahydropterin Synthase
           (Ptps) From Plasmodium Vivax At 2.2 A Resolution
 pdb|3LX3|A Chain A, Plasmodium Vivax 6-Pyruvoyltetrahydropterin Synthase
           (Ptps) In Complex With Xanthopterin
          Length = 180

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 129 RDEAARVMVAAPLIAFVTTH-ILYLNFYKLDHGLNMKVCLAM 169
           RD+ A ++V +PL +F   H I +  F +  HG N  V L +
Sbjct: 17  RDQIAELLVESPLFSFNCAHFIAFKGFRETLHGHNYNVSLRL 58


>pdb|3M0N|A Chain A, Plasmodium Vivax 6-Pyruvoyltetrahydropterin Synthase
           (Ptps), E37a Catalytic Residue Mutant
          Length = 180

 Score = 27.3 bits (59), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 129 RDEAARVMVAAPLIAFVTTH-ILYLNFYKLDHGLNMKVCLAM 169
           RD+ A ++V +PL +F   H I +  F    HG N  V L +
Sbjct: 17  RDQIAELLVESPLFSFNCAHFIAFKGFRATLHGHNYNVSLRL 58


>pdb|4HE8|M Chain M, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|4HE8|G Chain G, Crystal Structure Of The Membrane Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|4HEA|M Chain M, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
 pdb|4HEA|U Chain U, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
          Length = 469

 Score = 27.3 bits (59), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 196 VVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDD 241
           V+G GL+ LL +Y F  + G V AHA + A  +P   ++W+F  D 
Sbjct: 26  VLGAGLSFLLNLYLFLTHPGGV-AHA-FQAPLLPGAGVYWAFGLDG 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.468 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,770,498
Number of Sequences: 62578
Number of extensions: 305634
Number of successful extensions: 847
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 3
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)