BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025372
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis
GN=pgap3 PE=2 SV=1
Length = 316
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 12/235 (5%)
Query: 10 KVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKT 69
K G + ++HGKWPF R QEP + S LN G S +LL Y+ + +
Sbjct: 77 KEGHEVPQFHGKWPFSRFLFFQEPASALASFLN------GVASLLMLLRYRSSVPSSCQM 130
Query: 70 YYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVR 129
Y + ++++N+WFWS +FH+RD LTEK+D A +++ + L +R F ++
Sbjct: 131 YRTCLA----FSMVSVNAWFWSTIFHTRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQ 186
Query: 130 DEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTR--HP 187
+ A L+ H+ YL + D+ NM GV L+ W W R P
Sbjct: 187 YPSIANGFGAFLVLLFACHVSYLTLGRFDYSYNMAANTGFGVLNLMWWLAWCFRRRFHQP 246
Query: 188 SRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
WK LVV+ LL++ DFPP +DAHAL+H + +PL +L++SF++DDS
Sbjct: 247 YLWKCVLVVISLQSLALLELLDFPPVMWILDAHALWHFSTVPLHFLFYSFLKDDS 301
>sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3
PE=2 SV=1
Length = 316
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 127/239 (53%), Gaps = 12/239 (5%)
Query: 6 GEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRP 65
G + G ++HGKWPF R +EP + S LN G +LL Y+ +
Sbjct: 74 GLYQAEGYSIPQFHGKWPFARFLCFEEPASALASLLN------GLACLLMLLRYRSAVPC 127
Query: 66 DKKTYYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRA 125
Y+ T + ++++N+WFWS VFH+RD LTEK+D A A++ ++ L +R
Sbjct: 128 QSPMYHTITA----FSLVSLNAWFWSTVFHTRDTYLTEKMDYFCASAVILYSIYLCCVRT 183
Query: 126 FSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTR 185
+R A MV LI T+H+ YL F D+G NM ++G+ LL W W + R
Sbjct: 184 LGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYGYNMAANASIGIINLLWWLCWCWLNR 243
Query: 186 H--PSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
P W+ +VV+ LL++ DFPP +DAHA++H + +P+ +L++SF+ DDS
Sbjct: 244 RILPYWWRCGMVVLLLHGLALLELLDFPPLFWVLDAHAVWHLSTVPVHFLFYSFLIDDS 302
>sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3
PE=2 SV=1
Length = 317
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 121/235 (51%), Gaps = 12/235 (5%)
Query: 10 KVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKT 69
K G + ++HGKWPF R QEP + S LN G S +L Y+ + +
Sbjct: 77 KEGHEVPQFHGKWPFSRFLFFQEPASALASFLN------GVASLLMLFRYRSSVPSSCQM 130
Query: 70 YYEYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVR 129
Y + ++++N+WFWS +FH+RD LTEK+D A +++ + L +R F ++
Sbjct: 131 YRTCLA----FSMVSVNAWFWSTIFHTRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQ 186
Query: 130 DEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTR--HP 187
+ A L+ HI YL + D+ NM + G+ L+ W W R P
Sbjct: 187 YPSIANAFGAFLVLLFACHISYLTLGRFDYSYNMAANTSFGIVNLMWWLAWCMWRRFHQP 246
Query: 188 SRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
WK LVVV LL++ DFPP +DAHAL+H + IPL +L++SF+RDDS
Sbjct: 247 YLWKCVLVVVLLQSLALLELLDFPPVMWILDAHALWHFSTIPLHFLFYSFLRDDS 301
>sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3
PE=2 SV=1
Length = 320
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 12 GDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYY 71
G + ++HGKWPF R IQEP + S LN G S +L Y+ + Y+
Sbjct: 84 GHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASLVMLCRYRASVPASSPMYH 137
Query: 72 EYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE 131
+ +++N+WFWS VFH+RD +LTEK+D A A++ + L +R ++
Sbjct: 138 TCMA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASAVILHSVYLCCVRTVGLQHP 193
Query: 132 AARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRH--PSR 189
+ A L+ +T HI YL+ D+G NM +A+G+ L W +W R P
Sbjct: 194 SVASAFGALLLLLLTGHISYLSLVHFDYGYNMMANVAIGLVNLAWWLVWCLRNRQRLPHT 253
Query: 190 WKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
+ +VVV LL++ DFPP +DAHA++H + IP+ L++ F+ DDS
Sbjct: 254 RRCMVVVVLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHTLFFRFLEDDS 306
>sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster
GN=CG3271 PE=1 SV=2
Length = 326
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 12/224 (5%)
Query: 17 KYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYYEYTGL 76
+++GKWPF R+ G+QEP +V S LN + +L ++ +RPD Y L
Sbjct: 96 QFYGKWPFLRLLGMQEPASVIFSCLNFVVHLR------LLRKFRREVRPDSPCYM----L 145
Query: 77 WHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVM 136
HI+ + ++N W WSA+FH+RD LTE LD + A +++ + + ++R R +
Sbjct: 146 THIFAVTSLNGWIWSAIFHTRDFPLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGV 205
Query: 137 VAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGV--TRHPSRWKLWL 194
+ +++ + YL+ + ++ NM V +A GV + W +W TR P ++
Sbjct: 206 ITLAFLSYYINYFAYLSVGRFNYAFNMMVNVATGVIAAVGWFVWCHFVRTRRPYFRRILR 265
Query: 195 VVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFI 238
+ LAM L++ DFPP +DAHAL+H A IPL L++ +
Sbjct: 266 FYILMALAMSLELLDFPPILWILDAHALWHLATIPLASLYYECV 309
>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC823.07 PE=3 SV=1
Length = 331
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 23/241 (9%)
Query: 17 KYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLR--PDKKTYYEYT 74
+YHGKW F RV+GIQE +V S LN I ++G Y + R PD+
Sbjct: 91 QYHGKWYFIRVFGIQELFSVFFSMLNFMIHYNG---------YHIMRRCIPDEHPAKRLC 141
Query: 75 GLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAAR 134
W I G MN+W WS+VFH RD +TEKLD SA A + F ++ +
Sbjct: 142 LSWAIVG---MNAWVWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGG 198
Query: 135 VM----VAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHP--- 187
+ + IA H+ YL+FY D+G NMK +A+G+ Q ++W ++ R+
Sbjct: 199 KLLCWIIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYYYSWSNRNSGLY 258
Query: 188 -SRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDSEFRT 246
+RW + +V LA L+++DF P +DAHAL+H + +P+T+ + F+ +
Sbjct: 259 WTRWPAY-IVTSLMLATSLELFDFSPIANLIDAHALWHLSTVPITHYLYGFVVRKCSYDL 317
Query: 247 T 247
T
Sbjct: 318 T 318
>sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3
PE=2 SV=2
Length = 320
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 12 GDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYY 71
G K ++HGKWPF R QEP + S LN G S +L Y+ + Y+
Sbjct: 84 GHKVPQFHGKWPFSRFLFFQEPASAVASFLN------GLASLVMLCRYRTFVPASSPMYH 137
Query: 72 EYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE 131
+ +++N+WFWS VFH+RD +LTEK+D A ++ + L +R ++
Sbjct: 138 TCVA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHP 193
Query: 132 AARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWA--GVTRHPSR 189
A A L+ +T H+ YL+ + D+G N+ +A+G+ ++ W W R P
Sbjct: 194 AVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHV 253
Query: 190 WKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
K +VV+ LL++ DFPP +DAHA++H + IP+ L++SF+ DDS
Sbjct: 254 RKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDS 306
>sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3
PE=2 SV=1
Length = 319
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 12 GDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYY 71
G K ++HGKWPF R QEP + S LN G S +L Y+ + Y
Sbjct: 84 GQKVPQFHGKWPFSRFLCFQEPASAVASFLN------GLASLVMLCRYRTSVPASSPMYP 137
Query: 72 EYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE 131
+ +++N+WFWS VFH+RD +LTEK+D A ++ + L +R ++
Sbjct: 138 TCVA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHP 193
Query: 132 AARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGV---AQLLIWAIWAGVTRHPS 188
A A L+ +T H+ YL+ D+G NM +A+G+ A L W +W R P
Sbjct: 194 AMASAFRALLLLLLTAHVSYLSLIHFDYGYNMAANVAIGLLNAAWWLAWCLWN--QRLPH 251
Query: 189 RWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
K VV+ LL++ DFPP +DAHA++H + IP+ L++SF+ DDS
Sbjct: 252 VHKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDS 305
>sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus
GN=PGAP3 PE=2 SV=1
Length = 320
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 12/233 (5%)
Query: 12 GDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPLRPDKKTYY 71
G + ++HGKWPF R IQEP + S LN G S +L Y+ + Y+
Sbjct: 84 GHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASLVMLCRYRASVPASSPMYH 137
Query: 72 EYTGLWHIYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE 131
+ +++N+WFWS VFH+RD +LTEK+D A A++ + L +R ++
Sbjct: 138 TCMA----FAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASAVILHSIYLCCVRTVGLQHP 193
Query: 132 AARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWA--GVTRHPSR 189
+ A L+ + H YL+ + D+ NM +A+G+ L W W R P
Sbjct: 194 SVARAFGATLLLMLLLHTSYLSLVRFDYSYNMMANVAIGLVNLAWWLAWCLRNHRRLPHT 253
Query: 190 WKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 242
K VV+ LL++ DFPP +DAHA++H + IP+ L++ F+ DDS
Sbjct: 254 RKCVAVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFRFLEDDS 306
>sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PER1 PE=1 SV=1
Length = 357
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 37/266 (13%)
Query: 4 REGEREKVGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLSIQFHGWMSFFILLYYKLPL 63
R E E++ ++HGKWPF RV G QE + S N + G++ F ++ +
Sbjct: 91 RIDEEEEI----YQFHGKWPFLRVLGTQEFFSTIFSIGNFIPHYKGFVKFSRIIREEGDR 146
Query: 64 RPDKKTYYEYTGLW-HIYGILA-MNSWFWSAVFHSRDVELTEKLD--CSSAVALLGFNFI 119
R +W ++Y +A M +W S+VFH RD+ +TEKLD + L GF+ I
Sbjct: 147 RRKNS---RSILIWNYLYVTVAGMLAWTASSVFHCRDLIITEKLDYFFAGLTVLTGFHAI 203
Query: 120 LAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAI 179
A + + + + A+ A+ + A HIL L + + NM+ + GV Q ++ +
Sbjct: 204 FARMTSMFLYPKIAQAFTAS-VAAIFALHILRL-YVDWSYTYNMRFNIFFGVLQYILLIM 261
Query: 180 WAGVTRHP-SRWKLW-----------------------LVVVGEGLAMLLQIYDFPPYRG 215
+ H + KL L+V+ +AM L+++DF Y
Sbjct: 262 LSCQNYHALQKQKLMGEFKKTAYSSFKRQIFKLCVIPILLVIVTTMAMSLELFDFFSYEW 321
Query: 216 FVDAHALYHAANIPLTYLWWSFIRDD 241
+DAHAL+H I +++ + F +D
Sbjct: 322 QIDAHALWHLCTIWPSWVLYDFFLED 347
>sp|Q8BYY9|SPA3B_MOUSE Serine protease inhibitor A3B OS=Mus musculus GN=Serpina3b PE=2
SV=1
Length = 420
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 79 IYGILAMNSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDE 131
+ GI + + S + HS ++++TEK A+ ++G+NF+ A L+ V+ E
Sbjct: 341 LSGITGVKNITVSEMIHSTELDMTEKGTEGDAITIVGYNFMSAKLKPVFVKFE 393
>sp|Q13MI3|METE_BURXL 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia xenovorans (strain
LB400) GN=metE PE=3 SV=1
Length = 764
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 555 PVTMLQWSFVRDDQPRSTTAL 575
>sp|B2TBS1|METE_BURPP 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia phytofirmans (strain
DSM 17436 / PsJN) GN=metE PE=3 SV=1
Length = 764
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 555 PVTMLQWSFVRDDQPRSTTAL 575
>sp|Q82UP6|METE_NITEU 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=metE PE=3 SV=1
Length = 758
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 557 PVTMLMWSFVRDDQPRSTTAL 577
>sp|A1V6R3|METE_BURMS 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia mallei (strain SAVP1)
GN=metE PE=3 SV=1
Length = 764
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|Q62LZ2|METE_BURMA 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia mallei (strain ATCC
23344) GN=metE PE=3 SV=1
Length = 764
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|A2S4V8|METE_BURM9 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia mallei (strain NCTC
10229) GN=metE PE=3 SV=1
Length = 764
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|A3MHJ9|METE_BURM7 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia mallei (strain NCTC
10247) GN=metE PE=3 SV=1
Length = 764
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|Q3JPU6|METE_BURP1 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia pseudomallei (strain
1710b) GN=metE PE=3 SV=1
Length = 764
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|A3NY08|METE_BURP0 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia pseudomallei (strain
1106a) GN=metE PE=3 SV=1
Length = 764
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|Q63RX6|METE_BURPS 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia pseudomallei (strain
K96243) GN=metE PE=3 SV=1
Length = 764
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|A3NC70|METE_BURP6 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia pseudomallei (strain
668) GN=metE PE=3 SV=1
Length = 764
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
>sp|Q2SY55|METE_BURTA 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metE
PE=3 SV=1
Length = 764
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 229 PLTYLWWSFIRDDSEFRTTAL 249
P+T L WSF+RDD TTAL
Sbjct: 559 PVTMLQWSFVRDDQPRATTAL 579
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,895,729
Number of Sequences: 539616
Number of extensions: 3793828
Number of successful extensions: 8902
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8857
Number of HSP's gapped (non-prelim): 28
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)