Query 025372
Match_columns 254
No_of_seqs 123 out of 221
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 25.6 62 0.0021 18.5 2.6 14 166-179 6-19 (23)
2 3bkd_A Transmembrane domain of 23.3 70 0.0024 18.7 2.6 14 166-179 9-22 (26)
3 3ux4_A Acid-activated UREA cha 22.0 2.5E+02 0.0087 23.9 7.0 29 105-133 73-104 (195)
4 2kih_A Matrix protein 2; S31N, 16.4 1.1E+02 0.0037 19.9 2.6 16 165-180 12-27 (43)
5 2ljb_A M2 protein, BM2 protein 15.1 1.3E+02 0.0043 18.8 2.6 15 165-179 12-26 (35)
6 2k8j_X P7TM2; P7 polypeptide, 8.7 39 0.0013 20.5 -1.3 9 17-25 9-17 (29)
7 3kff_A MUP 4, major urinary pr 7.9 1E+02 0.0035 23.9 0.5 20 8-27 5-24 (162)
8 2ckx_A NGTRF1, telomere bindin 5.6 91 0.0031 22.8 -0.8 9 215-223 72-80 (83)
9 2fyg_A Replicase polyprotein 1 5.6 2.3E+02 0.0077 22.5 1.4 23 14-36 84-106 (128)
10 3ov9_A Nucleoprotein; orthogon 5.5 1.4E+02 0.0049 26.3 0.2 11 215-225 164-174 (245)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=25.65 E-value=62 Score=18.45 Aligned_cols=14 Identities=14% Similarity=0.702 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 025372 166 CLAMGVAQLLIWAI 179 (254)
Q Consensus 166 nv~~G~~~~~lW~~ 179 (254)
.-++|+++.++|++
T Consensus 6 a~iigIlHLiLwIl 19 (23)
T 3lbw_A 6 ASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999985
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=23.34 E-value=70 Score=18.69 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 025372 166 CLAMGVAQLLIWAI 179 (254)
Q Consensus 166 nv~~G~~~~~lW~~ 179 (254)
.-++|+++.++|++
T Consensus 9 a~iiGilHLiLwIl 22 (26)
T 3bkd_A 9 ASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999984
No 3
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=22.02 E-value=2.5e+02 Score=23.90 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.3
Q ss_pred hhHHhhHHHHHHH---HHHHHHHhccCChhHH
Q 025372 105 LDCSSAVALLGFN---FILAILRAFSVRDEAA 133 (254)
Q Consensus 105 lDYf~A~a~vl~~---l~~~~~R~f~l~~~~~ 133 (254)
.||++|....+|+ +|+++-|.++++.+..
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rgl 104 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRPY 104 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 6688877677777 5668889999987654
No 4
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=16.40 E-value=1.1e+02 Score=19.87 Aligned_cols=16 Identities=19% Similarity=0.617 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 025372 165 VCLAMGVAQLLIWAIW 180 (254)
Q Consensus 165 ~nv~~G~~~~~lW~~~ 180 (254)
+.-++|+++.++|++=
T Consensus 12 aa~iiGIlHLiLwild 27 (43)
T 2kih_A 12 AANIIGILHLILWILD 27 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3446899999999954
No 5
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=15.13 E-value=1.3e+02 Score=18.84 Aligned_cols=15 Identities=20% Similarity=0.727 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHH
Q 025372 165 VCLAMGVAQLLIWAI 179 (254)
Q Consensus 165 ~nv~~G~~~~~lW~~ 179 (254)
+--++|+++.++|++
T Consensus 12 aA~IigiLHlilWil 26 (35)
T 2ljb_A 12 AASIIGILHFIAWTI 26 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334689999999985
No 6
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=8.66 E-value=39 Score=20.49 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=5.8
Q ss_pred ccccccccc
Q 025372 17 KYHGKWPFR 25 (254)
Q Consensus 17 QFhGKWPF~ 25 (254)
-++|+||+.
T Consensus 9 ~~~g~Wpll 17 (29)
T 2k8j_X 9 ALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 356777763
No 7
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=7.85 E-value=1e+02 Score=23.91 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=11.9
Q ss_pred HHHcCCCCcccccccccccc
Q 025372 8 REKVGDKPVKYHGKWPFRRV 27 (254)
Q Consensus 8 R~~~g~~v~QFhGKWPF~Rv 27 (254)
-.+.+-...||-|||=-+-.
T Consensus 5 ~v~~nfd~~k~~G~Wy~ia~ 24 (162)
T 3kff_A 5 SKGQNLNVEKINGEWFSILL 24 (162)
T ss_dssp -----CCGGGGCEECEEEEE
T ss_pred cccCCCChHHcceEeEEEEE
Confidence 34567788999999966544
No 8
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=5.64 E-value=91 Score=22.76 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=6.2
Q ss_pred ccchhhhhh
Q 025372 215 GFVDAHALY 223 (254)
Q Consensus 215 ~~iDAHALW 223 (254)
+++||||.|
T Consensus 72 rv~~~~a~~ 80 (83)
T 2ckx_A 72 RVLAAHAYW 80 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567777766
No 9
>2fyg_A Replicase polyprotein 1AB; SARS virus polyprotein non-structural protein NSP10, zinc FI viral protein; 1.80A {Sars coronavirus} SCOP: g.86.1.1 PDB: 2xyq_B* 2xyr_B* 2xyv_B*
Probab=5.55 E-value=2.3e+02 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.1
Q ss_pred CCcccccccccccccccccHHHH
Q 025372 14 KPVKYHGKWPFRRVYGIQEPVAV 36 (254)
Q Consensus 14 ~v~QFhGKWPF~Rv~GiQEp~Sv 36 (254)
...||.||+--.-+-|.+||.+-
T Consensus 84 G~C~~KGkfVQiP~~g~~DPi~F 106 (128)
T 2fyg_A 84 GFCDLKGKYVQIPTTCANDPVGF 106 (128)
T ss_dssp CCCSSTTSEEEEEGGGTTCHHHH
T ss_pred ceeecCceEEEcccCCccCCeeE
Confidence 46899999999999999999873
No 10
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation, viral protein; 1.60A {Rift valley fever virus} PDB: 3ouo_A 3lyf_A 4h5m_A 4h5o_A 4h5p_A 4h5q_A 4h6f_A 4h6g_A
Probab=5.46 E-value=1.4e+02 Score=26.31 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=9.2
Q ss_pred ccchhhhhhhc
Q 025372 215 GFVDAHALYHA 225 (254)
Q Consensus 215 ~~iDAHALWHl 225 (254)
-++|||+|+++
T Consensus 164 ~i~dAh~Lf~~ 174 (245)
T 3ov9_A 164 AILDAHSLYLL 174 (245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57899999984
Done!