Query 025372
Match_columns 254
No_of_seqs 123 out of 221
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 09:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025372.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025372hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra1 c.51.1.1 (A:533-645) T 26.5 6.5 0.00047 27.9 0.0 9 17-25 2-10 (113)
2 d2a2ua_ b.60.1.1 (A:) Major ur 9.3 26 0.0019 24.8 -0.5 20 6-25 3-22 (158)
3 d1ggla_ b.60.1.2 (A:) Cellular 8.4 35 0.0026 24.7 -0.0 20 15-34 1-20 (134)
4 d1gt1a_ b.60.1.1 (A:) Odorant- 6.4 53 0.0039 23.3 0.1 16 10-25 4-19 (158)
5 d1beba_ b.60.1.1 (A:) beta-Lac 6.0 74 0.0054 22.0 0.7 15 11-25 4-18 (156)
6 d1znda1 b.60.1.1 (A:1-157) Maj 5.5 75 0.0055 22.1 0.5 18 9-26 6-23 (157)
7 d1jb0j_ f.23.18.1 (J:) Subunit 5.1 1.8E+02 0.013 17.2 2.0 16 197-212 19-34 (41)
8 d1eh9a3 c.1.8.1 (A:91-490) Gly 4.7 97 0.0071 24.7 0.7 9 101-109 31-39 (400)
9 d1maia_ b.55.1.1 (A:) Phosphol 4.6 81 0.0059 21.4 0.1 27 6-32 8-35 (119)
10 d1lpja_ b.60.1.2 (A:) Cellular 4.3 1E+02 0.0074 22.2 0.5 23 15-37 1-23 (133)
No 1
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=26.50 E-value=6.5 Score=27.94 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=7.3
Q ss_pred ccccccccc
Q 025372 17 KYHGKWPFR 25 (254)
Q Consensus 17 QFhGKWPF~ 25 (254)
.|.||||+.
T Consensus 2 ~~~G~~P~~ 10 (113)
T d1nyra1 2 ETKGAFPTW 10 (113)
T ss_dssp HHTTCCCTT
T ss_pred CCCCCCCcc
Confidence 689999963
No 2
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.32 E-value=26 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHcCCCCcccccccccc
Q 025372 6 GEREKVGDKPVKYHGKWPFR 25 (254)
Q Consensus 6 ~~R~~~g~~v~QFhGKWPF~ 25 (254)
.+..+++..+.||-|||=-.
T Consensus 3 ~~~~~~nfdl~k~~G~Wy~i 22 (158)
T d2a2ua_ 3 ASSTRGNLDVAKLNGDWFSI 22 (158)
T ss_dssp BCTTTTCCCGGGGCEECEEE
T ss_pred CCcccccCChHHcCEEeEEE
Confidence 34556788889999999655
No 3
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.45 E-value=35 Score=24.67 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=13.9
Q ss_pred CcccccccccccccccccHH
Q 025372 15 PVKYHGKWPFRRVYGIQEPV 34 (254)
Q Consensus 15 v~QFhGKWPF~Rv~GiQEp~ 34 (254)
|+||-|||-+.+-=...|++
T Consensus 1 p~~f~Gtwkl~~sENfd~fL 20 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNMEDYL 20 (134)
T ss_dssp CCSCCEEEEEEEEECHHHHH
T ss_pred CCCcCEEEEEEeccCHHHHH
Confidence 57999999988843333333
No 4
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.38 E-value=53 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=12.2
Q ss_pred HcCCCCcccccccccc
Q 025372 10 KVGDKPVKYHGKWPFR 25 (254)
Q Consensus 10 ~~g~~v~QFhGKWPF~ 25 (254)
+.+..+.||-|||=-+
T Consensus 4 ~~~~d~~k~~G~Wy~i 19 (158)
T d1gt1a_ 4 EAEQNLSELSGPWRTV 19 (158)
T ss_dssp CCCCCCGGGCEEEEEE
T ss_pred cccCChHHCCEEeEEE
Confidence 3567788999999655
No 5
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.96 E-value=74 Score=21.98 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=11.1
Q ss_pred cCCCCcccccccccc
Q 025372 11 VGDKPVKYHGKWPFR 25 (254)
Q Consensus 11 ~g~~v~QFhGKWPF~ 25 (254)
++-.+.||-|||=-+
T Consensus 4 ~~fdl~k~~G~Wy~I 18 (156)
T d1beba_ 4 KGLDIQKVAGTWYSL 18 (156)
T ss_dssp TTCCGGGGCEECEEE
T ss_pred cCCChHHcCEEeEEE
Confidence 456788999999643
No 6
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.50 E-value=75 Score=22.05 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=13.6
Q ss_pred HHcCCCCccccccccccc
Q 025372 9 EKVGDKPVKYHGKWPFRR 26 (254)
Q Consensus 9 ~~~g~~v~QFhGKWPF~R 26 (254)
..++-.+.||-|||=..-
T Consensus 6 ~~~nfdl~k~~G~Wy~Ia 23 (157)
T d1znda1 6 TGRNFNVEKINGEWHTII 23 (157)
T ss_dssp TSTTCCGGGGCEECEEEE
T ss_pred cccCCChHHcCEECEEEE
Confidence 456677899999997554
No 7
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=5.08 E-value=1.8e+02 Score=17.21 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhcCCC
Q 025372 197 VGEGLAMLLQIYDFPP 212 (254)
Q Consensus 197 ~~~~~am~LEl~DFpP 212 (254)
++.+.+.+.|+.-|.|
T Consensus 19 ~~~tAG~lIEiNRFfP 34 (41)
T d1jb0j_ 19 MTITAGILIEFNRFYP 34 (41)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhCc
Confidence 3456788899999988
No 8
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=4.67 E-value=97 Score=24.74 Aligned_cols=9 Identities=33% Similarity=0.409 Sum_probs=4.8
Q ss_pred cchhhhHHh
Q 025372 101 LTEKLDCSS 109 (254)
Q Consensus 101 ~TE~lDYf~ 109 (254)
++|||||+-
T Consensus 31 i~~~ldyi~ 39 (400)
T d1eh9a3 31 VIRKLDYLK 39 (400)
T ss_dssp HHHTHHHHH
T ss_pred HHHHhHHHH
Confidence 445555554
No 9
>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.62 E-value=81 Score=21.39 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=21.3
Q ss_pred HHHHHcCCCCccccc-cccccccccccc
Q 025372 6 GEREKVGDKPVKYHG-KWPFRRVYGIQE 32 (254)
Q Consensus 6 ~~R~~~g~~v~QFhG-KWPF~Rv~GiQE 32 (254)
-++.++|....|+.+ +||..|+|-++|
T Consensus 8 l~~l~~G~~l~K~~~~~~~k~R~f~L~~ 35 (119)
T d1maia_ 8 LQALLKGSQLLKVKSSSWRRERFYKLQE 35 (119)
T ss_dssp HHHHHHCEEEEEESSSSCEEEEEEEECT
T ss_pred HHHHHcCCeEEEeCCCCCCEEEEEEEcC
Confidence 456778888889986 599999987764
No 10
>d1lpja_ b.60.1.2 (A:) Cellular retinol-binding protein IV {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1e+02 Score=22.20 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=17.6
Q ss_pred CcccccccccccccccccHHHHH
Q 025372 15 PVKYHGKWPFRRVYGIQEPVAVA 37 (254)
Q Consensus 15 v~QFhGKWPF~Rv~GiQEp~Svl 37 (254)
|++|-|||-+.+==.+-|++..+
T Consensus 1 p~~f~Gtwkl~~seNfd~fLk~l 23 (133)
T d1lpja_ 1 PADLSGTWTLLSSDNFEGYMLAL 23 (133)
T ss_dssp CCCCCEEEEEEEEESHHHHHHHH
T ss_pred CCcccEEEEEEeccCHHHHHHHc
Confidence 57999999998866666666554
Done!