BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025373
(254 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/250 (86%), Positives = 235/250 (94%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+
Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLS
Sbjct: 61 FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
GIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
VCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQ
Sbjct: 181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240
Query: 241 RSRVLATLYK 250
RSRVLATLYK
Sbjct: 241 RSRVLATLYK 250
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 161/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL ++QPRV+SFEEQV IR++LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 160/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 212 bits (539), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/234 (50%), Positives = 160/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 160/234 (68%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV +R+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASVRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 207 bits (527), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 156/234 (66%), Gaps = 10/234 (4%)
Query: 20 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL + D Q K F++ M++++V LV+SRQLL F L L + K +
Sbjct: 25 KYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE ++ W AAQ+L GI L++G + + ++
Sbjct: 85 CHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LDTYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
A RY ++S + I ET EAL+ AL CTILA+AG QRSR+LATL+K
Sbjct: 205 AQRYNELS---YKSIVHETERLEALKHALH----CTILASAGQQRSRMLATLFK 251
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 155/250 (62%), Gaps = 8/250 (3%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
++ L SA++D + K E+YK IL ++ S + K FI H+ + PLV+SR +L +
Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITHLTDESTPLVISRTILLS 65
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
F L + Q E+ + L +IQ RVV+FEEQV IR LA LYE ++ W ++A+ L
Sbjct: 66 FTSSHKTLPEDIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCLI 125
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
I LDS RVI +++ V+IARL+LE++++ AE +IN+AS + + + L L +K
Sbjct: 126 AIPLDSSQRVISPEYKVKIYVKIARLFLEEEESGQAETYINRASDSLHLVKNQKLILAHK 185
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
C+ARI+D KR FL+A+LRYYD+SQ + D E + ALS A+ C IL AGPQ
Sbjct: 186 TCFARIMDYKRMFLKASLRYYDLSQCLPK-------DTERM-HALSCAIVCAILDKAGPQ 237
Query: 241 RSRVLATLYK 250
RSR LATLYK
Sbjct: 238 RSRTLATLYK 247
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 193 bits (491), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 159/240 (66%), Gaps = 10/240 (4%)
Query: 14 QRQKIEQYKHILSSVISSND---IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEP 70
+ + ++Y+ +L +V+++ I + F++ ++++ V LV+SRQ+L EL +L
Sbjct: 26 HKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPD 85
Query: 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 130
+ K ++++TL ++ PRV+SFEEQV IR LA++YE QQW AA +L GI L++G +
Sbjct: 86 DLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQ 145
Query: 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190
+L ++IARLYLED+D+V AE FIN+AS L + + E L + YKVCYAR+LD +
Sbjct: 146 YSVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYR 205
Query: 191 RKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
RKF+EAA RY ++S R+I +D+ AL A+ CT+LA+AG QRSR+LATL+K
Sbjct: 206 RKFIEAAQRYNELSY---RKI----VDQGERMTALKKALICTVLASAGQQRSRMLATLFK 258
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 152/252 (60%), Gaps = 11/252 (4%)
Query: 3 SALASASAITDQRQKIEQYKHILSSVISSNDIVQAKK----FIDHMLSDDVPLVVSRQLL 58
SALA + + K++ Y +LS +S++ Q ++D +LS+D+ +V +R +L
Sbjct: 8 SALAEIESSASPQNKLQLYNDLLSETVSASPEPQLADDLIYYLDSVLSEDLSIVAARPIL 67
Query: 59 QTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQM 118
+F L +L ETQ ++A + + +Q R S EEQ IRE LAD YE+E+++ AA+
Sbjct: 68 DSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQIREILADAYEAEEEYIAAARA 127
Query: 119 LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178
L GI +DS R++ D+ ++ ++I RLYLE+DD +AEAF+N+ L S + L L
Sbjct: 128 LQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAFLNRIKNLPSKIEDHELKLH 187
Query: 179 YKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG 238
+++ ARI D +R+FL+A+ Y+ +S +DE QAL+AA+ C +LA AG
Sbjct: 188 FRLSQARIQDARRRFLDASQEYFAVSLAAG-------VDESDRLQALAAAIRCAVLAPAG 240
Query: 239 PQRSRVLATLYK 250
PQRSR LATLYK
Sbjct: 241 PQRSRTLATLYK 252
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 16/238 (6%)
Query: 22 KHILSSVISSNDIVQAKKFIDHMLS-DDVPLVVSRQLLQTFAQELG--RLEPETQKEIAN 78
K++ + + D + K ID +++ + +VVSRQ + + L LE E K I+
Sbjct: 34 KYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERLDNQHLESECVKAISE 93
Query: 79 YTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-----GMRVIDD 133
LA I+ R +S+E+QV I+R LA LYE E + AAQ L I+ D+ G + +
Sbjct: 94 GILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAINSDTSPKFNGPQAAKE 153
Query: 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFL-VSSSQQEVLNLQYKVCYARILDLKRK 192
+ C++I +L L+ + AE ++N+ S L V + +++K AR+ D KR+
Sbjct: 154 GAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQIEHKALQARVSDAKRR 213
Query: 193 FLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
F+EAA RYY++S ++ D+ AL A+ C +LA GPQRSR+L ++K
Sbjct: 214 FVEAAQRYYELSATEQLPNSDKLT-------ALGKAIVCVLLAKPGPQRSRLLTLIFK 264
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 9/161 (5%)
Query: 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD 151
++ I E LA +ES+ ++ AA+ L+ I LDS R + D ++ ++I R YLEDD
Sbjct: 117 DQTATIYEELLAAAHESQNSFTDAAKTLAAIPLDSSQRRVTDKYKADLWIRIIRNYLEDD 176
Query: 152 DAVNAEAFINKASFLVS--SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKR 209
DA +AE ++NK ++ + VLNL +K+ ARI D R+FL A+ YY+IS
Sbjct: 177 DATSAETYLNKLKNIIHNVADDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISL---- 232
Query: 210 QIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
I EE LS A+ C +LA AGP RSRVLA LYK
Sbjct: 233 ---SPAIAEEERLHTLSMAIKCAVLAPAGPPRSRVLARLYK 270
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 29/237 (12%)
Query: 6 ASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQEL 65
A A T++++ EQ K L+ SN+ + + +L DV + +S
Sbjct: 21 ALALHYTNEKELFEQAKRCLNICCGSNNFAKRNDVLFSLL--DVAVSISSL--------- 69
Query: 66 GRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLD 125
E +KE+ + +Q + E ++ +LA +YE+EQ + L ++
Sbjct: 70 -----ELRKELISELYVPVQSLEEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVEKH 124
Query: 126 SGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA---SFLVSSSQQEVLNLQYKVC 182
+ L + +++ YL+ A A + + +F VS+ Q L ++ ++C
Sbjct: 125 GHFENDLEQLLLLR-IRLGDAYLKLGKAEKAILTVRTSIPLAFKVSNDQ---LLMELQLC 180
Query: 183 YARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGP 239
AR LD +FLEAA YY + +Q + G+E I E L + C +LA P
Sbjct: 181 NARALDETGQFLEAAKCYYRV--LQYKVPGNELIYRE----NLCSVAQCLLLAIPSP 231
>sp|P68359|CSN4_BRAOL COP9 signalosome complex subunit 4 (Fragments) OS=Brassica oleracea
GN=CSN4 PE=1 SV=1
Length = 45
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 19/20 (95%)
Query: 190 KRKFLEAALRYYDISQIQKR 209
KRKFL+AALRYY ISQI+K+
Sbjct: 1 KRKFLDAALRYYSISQIEKK 20
>sp|B2V7L9|RPOC_SULSY DNA-directed RNA polymerase subunit beta' OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=rpoC PE=3 SV=1
Length = 1579
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 175 LNLQYKVCYAR-----ILDLKRKFLEAALRYYDISQIQK 208
LNL YK+ Y R I+++ RKF E LR+ DI +K
Sbjct: 233 LNLSYKMNYPRLYNKAIIEIARKFSEVGLRFGDIEPTEK 271
>sp|Q3IJ28|SYGB_PSEHT Glycine--tRNA ligase beta subunit OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=glyS PE=3 SV=1
Length = 689
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 25 LSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQI 84
+S++++ NDI + +L+DD V++ Q+ + FA EL L + A LA I
Sbjct: 585 VSNILAKNDITSEGNVDESLLTDDAEKVLAAQVAK-FATELAPLYASGNYQEALSQLAGI 643
Query: 85 QPRVVSFEEQVLII 98
+ V SF + V+++
Sbjct: 644 RQSVDSFFDNVMVM 657
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,129,638
Number of Sequences: 539616
Number of extensions: 2806173
Number of successful extensions: 10025
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 9974
Number of HSP's gapped (non-prelim): 63
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)