Query 025373
Match_columns 254
No_of_seqs 143 out of 205
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1497 COP9 signalosome, subu 100.0 5.3E-65 1.2E-69 469.7 25.9 245 3-254 7-254 (399)
2 KOG1498 26S proteasome regulat 100.0 2.4E-36 5.1E-41 285.1 19.0 190 57-252 92-282 (439)
3 COG5071 RPN5 26S proteasome re 100.0 7.9E-29 1.7E-33 229.2 16.6 190 57-252 92-282 (439)
4 PF10602 RPN7: 26S proteasome 98.7 2.9E-07 6.4E-12 79.4 12.4 115 88-206 28-142 (177)
5 PF14938 SNAP: Soluble NSF att 96.1 0.23 5.1E-06 45.1 14.6 157 55-229 114-277 (282)
6 PF09976 TPR_21: Tetratricopep 96.0 0.071 1.5E-06 43.4 9.6 93 99-202 51-143 (145)
7 KOG0687 26S proteasome regulat 95.4 0.17 3.6E-06 48.7 10.8 172 47-236 62-234 (393)
8 COG5187 RPN7 26S proteasome re 95.4 0.16 3.5E-06 48.4 10.3 112 91-206 110-221 (412)
9 PF09976 TPR_21: Tetratricopep 94.0 2.8 6.1E-05 34.0 14.9 132 18-163 12-144 (145)
10 TIGR02795 tol_pal_ybgF tol-pal 93.8 0.55 1.2E-05 35.2 8.4 102 98-206 4-105 (119)
11 PF14559 TPR_19: Tetratricopep 93.5 0.14 3E-06 35.7 4.3 67 107-186 2-68 (68)
12 PF13424 TPR_12: Tetratricopep 92.8 0.89 1.9E-05 32.5 7.8 68 137-204 5-73 (78)
13 KOG2076 RNA polymerase III tra 92.6 8.5 0.00018 41.2 17.3 132 54-206 139-270 (895)
14 KOG1840 Kinesin light chain [C 92.4 6.3 0.00014 39.8 15.6 131 70-203 215-351 (508)
15 cd00189 TPR Tetratricopeptide 92.3 2.3 5E-05 28.4 9.0 90 100-202 4-93 (100)
16 PF04348 LppC: LppC putative l 92.2 0.041 8.9E-07 55.3 0.0 107 93-206 21-127 (536)
17 PRK11788 tetratricopeptide rep 91.8 10 0.00022 34.7 20.1 103 96-206 141-243 (389)
18 PF10345 Cohesin_load: Cohesin 91.4 0.95 2E-05 45.8 8.7 79 113-194 38-117 (608)
19 TIGR02552 LcrH_SycD type III s 91.1 4.4 9.5E-05 31.5 10.6 97 96-206 17-114 (135)
20 PF13424 TPR_12: Tetratricopep 90.4 1.4 3E-05 31.5 6.6 71 95-167 4-76 (78)
21 TIGR02521 type_IV_pilW type IV 89.9 2.7 5.8E-05 34.1 8.6 65 94-166 29-94 (234)
22 TIGR02521 type_IV_pilW type IV 89.8 9.4 0.0002 30.9 17.0 167 18-205 31-197 (234)
23 PRK11788 tetratricopeptide rep 89.0 18 0.0004 33.1 17.9 95 98-205 216-310 (389)
24 COG3107 LppC Putative lipoprot 88.6 5.4 0.00012 40.7 11.2 119 76-205 46-164 (604)
25 PF13432 TPR_16: Tetratricopep 88.5 1.5 3.2E-05 30.3 5.3 60 101-167 2-61 (65)
26 PF13414 TPR_11: TPR repeat; P 88.0 1.2 2.6E-05 31.0 4.7 57 100-164 7-65 (69)
27 PRK10049 pgaA outer membrane p 87.7 39 0.00084 35.3 17.5 100 94-206 357-456 (765)
28 cd05804 StaR_like StaR_like; a 87.6 3.4 7.5E-05 37.4 8.6 97 98-203 116-212 (355)
29 TIGR03302 OM_YfiO outer membra 87.0 8.2 0.00018 33.1 10.2 112 90-206 27-144 (235)
30 PF14938 SNAP: Soluble NSF att 86.0 26 0.00057 31.7 17.8 187 16-205 33-224 (282)
31 PRK11447 cellulose synthase su 85.4 12 0.00026 40.8 12.6 95 98-205 605-699 (1157)
32 PF04733 Coatomer_E: Coatomer 85.1 3.7 7.9E-05 38.1 7.5 94 97-206 103-196 (290)
33 PRK10370 formate-dependent nit 84.6 18 0.0004 31.3 11.3 99 96-207 73-174 (198)
34 cd05804 StaR_like StaR_like; a 84.6 31 0.00066 31.2 14.0 65 96-164 148-213 (355)
35 TIGR02795 tol_pal_ybgF tol-pal 84.0 2.5 5.4E-05 31.5 4.9 68 97-169 40-108 (119)
36 PF13414 TPR_11: TPR repeat; P 82.9 9.2 0.0002 26.4 7.2 62 136-203 2-64 (69)
37 PF12895 Apc3: Anaphase-promot 82.4 2.2 4.7E-05 31.3 3.9 60 96-163 25-84 (84)
38 TIGR02917 PEP_TPR_lipo putativ 81.8 57 0.0012 32.3 19.4 101 92-206 121-222 (899)
39 cd00189 TPR Tetratricopeptide 80.9 5.4 0.00012 26.5 5.3 62 97-166 35-97 (100)
40 PF13432 TPR_16: Tetratricopep 79.9 11 0.00025 25.7 6.8 59 142-206 2-60 (65)
41 TIGR02552 LcrH_SycD type III s 78.9 12 0.00025 29.1 7.3 66 96-169 51-117 (135)
42 PRK11447 cellulose synthase su 78.3 16 0.00035 39.8 10.4 103 96-205 637-739 (1157)
43 PF13371 TPR_9: Tetratricopept 77.7 3.1 6.7E-05 29.1 3.3 54 146-205 4-57 (73)
44 PRK14574 hmsH outer membrane p 77.2 23 0.0005 37.8 10.9 96 97-206 103-198 (822)
45 KOG2908 26S proteasome regulat 76.5 80 0.0017 30.9 16.4 95 135-236 113-212 (380)
46 PF13181 TPR_8: Tetratricopept 76.5 4.4 9.5E-05 24.3 3.4 31 137-167 1-31 (34)
47 PLN03077 Protein ECB2; Provisi 76.4 90 0.0019 32.7 14.9 92 99-205 628-719 (857)
48 PRK09782 bacteriophage N4 rece 76.0 43 0.00093 36.5 12.7 97 94-207 40-138 (987)
49 TIGR00990 3a0801s09 mitochondr 75.7 39 0.00084 33.9 11.7 99 94-206 329-428 (615)
50 KOG2076 RNA polymerase III tra 75.4 9.3 0.0002 40.9 7.3 73 91-170 409-482 (895)
51 TIGR02917 PEP_TPR_lipo putativ 75.4 89 0.0019 30.9 18.7 167 17-205 21-187 (899)
52 PF12569 NARP1: NMDA receptor- 75.2 98 0.0021 31.4 19.3 85 133-234 190-274 (517)
53 PRK10747 putative protoheme IX 74.0 74 0.0016 30.3 12.6 91 103-205 125-215 (398)
54 COG2406 Protein distantly rela 73.8 7.7 0.00017 33.6 5.2 63 171-233 58-120 (172)
55 PLN03081 pentatricopeptide (PP 73.7 1.1E+02 0.0024 31.2 15.3 92 100-206 466-557 (697)
56 PF12895 Apc3: Anaphase-promot 73.5 9.5 0.0002 27.8 5.1 81 109-201 2-82 (84)
57 PRK02603 photosystem I assembl 72.6 25 0.00054 29.1 8.1 68 96-168 35-103 (172)
58 COG2956 Predicted N-acetylgluc 70.6 80 0.0017 30.9 11.7 67 98-169 143-212 (389)
59 COG3071 HemY Uncharacterized e 70.6 1.2E+02 0.0025 30.1 14.0 155 17-203 228-387 (400)
60 PRK10049 pgaA outer membrane p 70.4 48 0.001 34.6 11.2 102 99-206 313-422 (765)
61 KOG3081 Vesicle coat complex C 70.0 59 0.0013 30.8 10.5 93 97-205 109-201 (299)
62 PF13176 TPR_7: Tetratricopept 68.7 5.4 0.00012 25.1 2.5 22 100-121 3-24 (36)
63 PF00515 TPR_1: Tetratricopept 68.6 9.9 0.00021 22.8 3.6 31 137-167 1-31 (34)
64 PF07719 TPR_2: Tetratricopept 67.8 11 0.00023 22.4 3.6 31 138-168 2-32 (34)
65 CHL00033 ycf3 photosystem I as 67.7 67 0.0015 26.3 10.2 70 94-168 33-103 (168)
66 PF03704 BTAD: Bacterial trans 66.8 24 0.00051 28.2 6.5 70 91-168 57-127 (146)
67 CHL00033 ycf3 photosystem I as 66.4 71 0.0015 26.1 9.7 86 112-205 15-100 (168)
68 PF13428 TPR_14: Tetratricopep 66.1 6.7 0.00015 25.6 2.6 24 98-121 3-26 (44)
69 PF10345 Cohesin_load: Cohesin 66.1 1.6E+02 0.0034 30.0 15.5 131 73-207 36-169 (608)
70 PRK10747 putative protoheme IX 66.0 1.2E+02 0.0027 28.8 13.9 60 137-203 328-387 (398)
71 PF14559 TPR_19: Tetratricopep 65.6 40 0.00087 22.9 6.7 54 147-206 1-54 (68)
72 PF13174 TPR_6: Tetratricopept 65.3 11 0.00023 22.1 3.2 31 139-169 2-32 (33)
73 KOG1524 WD40 repeat-containing 64.1 9 0.00019 39.4 4.2 58 142-199 649-716 (737)
74 PLN03088 SGT1, suppressor of 63.5 89 0.0019 29.6 10.7 83 96-188 36-119 (356)
75 PRK12798 chemotaxis protein; R 62.5 37 0.00081 33.7 8.0 82 130-221 250-331 (421)
76 TIGR00540 hemY_coli hemY prote 61.7 1.5E+02 0.0032 28.2 12.1 64 97-167 336-400 (409)
77 PRK14474 F0F1 ATP synthase sub 61.7 15 0.00032 33.6 4.8 92 38-131 130-230 (250)
78 PF13429 TPR_15: Tetratricopep 61.4 23 0.0005 31.4 6.0 64 101-169 115-178 (280)
79 KOG1585 Protein required for f 61.4 1.5E+02 0.0032 28.1 11.6 70 135-205 89-178 (308)
80 PF12569 NARP1: NMDA receptor- 61.0 1.9E+02 0.0042 29.3 17.1 99 100-205 232-333 (517)
81 PF13176 TPR_7: Tetratricopept 61.0 10 0.00022 23.8 2.7 28 140-167 2-29 (36)
82 PLN03218 maturation of RBCL 1; 60.8 2.7E+02 0.0058 30.9 15.8 60 100-163 546-605 (1060)
83 PF07064 RIC1: RIC1; InterPro 60.6 72 0.0016 29.4 9.2 125 35-163 116-246 (258)
84 TIGR03302 OM_YfiO outer membra 59.1 1.1E+02 0.0024 26.0 12.1 104 98-206 72-195 (235)
85 smart00299 CLH Clathrin heavy 59.1 28 0.0006 27.7 5.6 110 22-162 11-121 (140)
86 PRK15359 type III secretion sy 57.5 1E+02 0.0022 25.0 9.5 92 101-206 29-121 (144)
87 KOG1155 Anaphase-promoting com 57.5 23 0.00049 36.0 5.6 68 97-166 467-536 (559)
88 PRK11189 lipoprotein NlpI; Pro 57.2 1.5E+02 0.0033 26.9 11.4 66 94-167 62-128 (296)
89 PLN03088 SGT1, suppressor of 57.2 1.1E+02 0.0023 29.0 10.0 91 102-206 8-99 (356)
90 KOG2003 TPR repeat-containing 56.8 2.3E+02 0.0049 29.3 12.4 149 36-205 539-688 (840)
91 PF13428 TPR_14: Tetratricopep 56.6 19 0.0004 23.4 3.5 32 138-169 2-33 (44)
92 COG2956 Predicted N-acetylgluc 55.9 2.1E+02 0.0045 28.1 14.6 137 80-229 58-207 (389)
93 PF07721 TPR_4: Tetratricopept 55.4 16 0.00035 21.4 2.8 24 97-120 2-25 (26)
94 PF13371 TPR_9: Tetratricopept 50.9 79 0.0017 21.7 7.0 28 138-165 30-57 (73)
95 KOG2002 TPR-containing nuclear 50.7 3E+02 0.0065 30.4 12.8 165 18-196 530-735 (1018)
96 PF13429 TPR_15: Tetratricopep 50.2 1.8E+02 0.0039 25.7 10.5 94 97-203 181-274 (280)
97 KOG0543 FKBP-type peptidyl-pro 50.0 1.6E+02 0.0035 29.1 10.1 130 34-168 138-288 (397)
98 PRK15174 Vi polysaccharide exp 49.7 3.1E+02 0.0067 28.2 19.1 98 96-206 284-381 (656)
99 TIGR00540 hemY_coli hemY prote 49.0 1E+02 0.0022 29.3 8.6 92 103-206 91-182 (409)
100 smart00028 TPR Tetratricopepti 48.6 27 0.00058 18.4 2.9 29 138-166 2-30 (34)
101 KOG1840 Kinesin light chain [C 47.8 3.2E+02 0.0069 27.8 13.2 141 60-206 246-396 (508)
102 PRK10803 tol-pal system protei 47.8 58 0.0013 29.8 6.4 102 95-205 143-245 (263)
103 TIGR03504 FimV_Cterm FimV C-te 47.0 16 0.00034 24.9 1.9 25 99-123 2-26 (44)
104 PRK14720 transcript cleavage f 46.1 1.3E+02 0.0028 32.9 9.4 107 90-205 25-131 (906)
105 PRK02603 photosystem I assembl 45.9 1.3E+02 0.0027 24.8 7.7 71 133-206 31-101 (172)
106 KOG1129 TPR repeat-containing 45.7 1.2E+02 0.0027 29.9 8.4 97 96-206 223-319 (478)
107 PRK10803 tol-pal system protei 43.8 1.9E+02 0.0041 26.5 9.1 62 140-204 146-207 (263)
108 KOG1463 26S proteasome regulat 42.3 3.5E+02 0.0076 26.7 12.6 200 27-236 57-263 (411)
109 PRK10370 formate-dependent nit 42.1 2.3E+02 0.0049 24.5 10.1 64 137-206 73-139 (198)
110 PLN03218 maturation of RBCL 1; 41.7 5.3E+02 0.012 28.6 17.6 21 102-122 620-640 (1060)
111 PF11768 DUF3312: Protein of u 41.2 2E+02 0.0043 29.7 9.5 91 105-203 417-510 (545)
112 KOG1070 rRNA processing protei 39.6 60 0.0013 37.1 5.9 88 97-191 1531-1618(1710)
113 PF13374 TPR_10: Tetratricopep 38.3 48 0.001 20.1 3.2 26 96-121 2-27 (42)
114 TIGR00990 3a0801s09 mitochondr 38.1 4.3E+02 0.0093 26.5 19.7 102 96-205 467-570 (615)
115 KOG1586 Protein required for f 37.7 3.6E+02 0.0077 25.5 10.8 119 103-236 161-283 (288)
116 PF09295 ChAPs: ChAPs (Chs5p-A 37.5 1.5E+02 0.0033 29.0 7.8 83 101-196 205-287 (395)
117 COG3629 DnrI DNA-binding trans 35.6 95 0.0021 29.1 5.9 72 90-169 140-219 (280)
118 COG3071 HemY Uncharacterized e 35.1 2.5E+02 0.0055 27.8 8.8 96 58-169 298-393 (400)
119 PF02885 Glycos_trans_3N: Glyc 34.3 1.4E+02 0.0029 21.4 5.4 40 21-60 2-43 (66)
120 KOG3617 WD40 and TPR repeat-co 33.8 85 0.0018 34.5 5.7 151 75-251 1122-1289(1416)
121 PF04049 APC8: Anaphase promot 33.5 2E+02 0.0043 24.0 7.0 48 138-195 76-123 (142)
122 PRK11189 lipoprotein NlpI; Pro 32.9 3.8E+02 0.0082 24.3 10.0 70 131-206 58-127 (296)
123 PRK15359 type III secretion sy 32.8 2.4E+02 0.0051 22.8 7.2 67 96-169 58-124 (144)
124 KOG3616 Selective LIM binding 32.2 56 0.0012 35.4 4.1 78 88-181 1036-1116(1636)
125 PF12854 PPR_1: PPR repeat 31.9 56 0.0012 20.3 2.6 24 100-123 11-34 (34)
126 PRK12370 invasion protein regu 31.3 2.5E+02 0.0054 28.0 8.5 66 96-169 338-404 (553)
127 PRK09782 bacteriophage N4 rece 30.4 5.5E+02 0.012 28.3 11.3 62 137-204 609-670 (987)
128 PF09613 HrpB1_HrpK: Bacterial 27.5 2.9E+02 0.0064 23.9 7.1 47 74-127 29-75 (160)
129 COG1849 Uncharacterized protei 27.5 71 0.0015 25.3 3.0 32 136-167 40-71 (90)
130 PRK14574 hmsH outer membrane p 27.3 8.1E+02 0.018 26.4 16.3 176 19-205 272-478 (822)
131 PHA01735 hypothetical protein 27.1 1.3E+02 0.0027 23.0 4.1 52 23-74 20-73 (76)
132 PLN03077 Protein ECB2; Provisi 27.0 7.5E+02 0.016 25.9 14.3 57 97-163 324-380 (857)
133 KOG2880 SMAD6 interacting prot 26.3 1.9E+02 0.0042 28.5 6.3 90 111-203 9-132 (424)
134 PF04010 DUF357: Protein of un 25.6 70 0.0015 24.1 2.6 28 135-162 33-60 (75)
135 PF09670 Cas_Cas02710: CRISPR- 25.3 3E+02 0.0064 26.6 7.5 115 77-201 116-265 (379)
136 cd00056 ENDO3c endonuclease II 25.1 2.8E+02 0.0061 22.5 6.5 117 38-169 2-124 (158)
137 PRK15179 Vi polysaccharide bio 25.0 4.1E+02 0.009 28.0 9.0 105 92-206 45-149 (694)
138 PF10799 YliH: Biofilm formati 24.4 1.9E+02 0.0041 24.1 5.0 40 190-234 43-88 (127)
139 KOG1585 Protein required for f 24.1 6.3E+02 0.014 24.0 10.0 112 93-206 88-219 (308)
140 PF04348 LppC: LppC putative l 23.8 26 0.00057 35.4 0.0 87 77-168 43-129 (536)
141 PF14561 TPR_20: Tetratricopep 23.4 2.8E+02 0.0061 21.1 5.7 67 95-165 21-87 (90)
142 PF12862 Apc5: Anaphase-promot 23.0 2.6E+02 0.0057 21.0 5.5 80 107-187 9-91 (94)
143 PF04053 Coatomer_WDAD: Coatom 22.2 7.8E+02 0.017 24.4 11.4 95 105-227 327-427 (443)
144 cd00280 TRFH Telomeric Repeat 22.1 2E+02 0.0043 25.9 5.2 106 35-143 33-156 (200)
145 smart00299 CLH Clathrin heavy 21.4 2.1E+02 0.0046 22.5 4.9 25 98-122 84-108 (140)
146 KOG3650 Predicted coiled-coil 21.3 1.3E+02 0.0027 24.5 3.4 45 23-67 60-105 (120)
147 PF00244 14-3-3: 14-3-3 protei 20.4 3.7E+02 0.008 24.1 6.7 46 181-233 5-50 (236)
No 1
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-65 Score=469.69 Aligned_cols=245 Identities=53% Similarity=0.826 Sum_probs=236.0
Q ss_pred HHHHhhhhcchhhhhHHHHHHHHHHhhcCC--C-HHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHH
Q 025373 3 SALASASAITDQRQKIEQYKHILSSVISSN--D-IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANY 79 (254)
Q Consensus 3 ~~L~~~~~~~~~~~~~~~y~~ll~~i~~~~--~-~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~ 79 (254)
+.+.-+-+.+|||++.++|+.+|+..++++ + .+.+|.||+++++++|++|+|||+++.|...|+.++++.+|++.++
T Consensus 7 eev~~~~~~g~hk~~~~qyr~~l~~~lt~~~~el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~Kei~~~ 86 (399)
T KOG1497|consen 7 EEVVLIFAEGDHKDQAEQYRQLLAKVLTNNGMELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELRKEISHF 86 (399)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 345556777899999999999999999877 4 4899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHH
Q 025373 80 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAF 159 (254)
Q Consensus 80 ~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~ 159 (254)
+|..|+||.||||||++.+|.+||.+||++++|+.||++|.|||+|||++.++++.|+..|+||+|||||+||.++||.|
T Consensus 87 ~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~ 166 (399)
T KOG1497|consen 87 TLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAY 166 (399)
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 025373 160 INKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGP 239 (254)
Q Consensus 160 ~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caILApagp 239 (254)
+||+|.++.+.+|++|++.||+|+||++|++|||+|||+|||++|++ ..+|+.+++++|++|+.|++||.+||
T Consensus 167 inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~-------ki~~e~~~~~aL~~a~~CtlLA~~gp 239 (399)
T KOG1497|consen 167 INRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR-------KIVDESERLEALKKALQCTLLASAGP 239 (399)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcchHHHHHHHHHhHhheeecCCCh
Confidence 99999999999999999999999999999999999999999999997 55899999999999999999999999
Q ss_pred hhhHHHHHHhhccCC
Q 025373 240 QRSRVLATLYKVNNH 254 (254)
Q Consensus 240 ~RSrlL~~LykDeR~ 254 (254)
||||||++||||||.
T Consensus 240 qrsr~Latlfkder~ 254 (399)
T KOG1497|consen 240 QRSRMLATLFKDERC 254 (399)
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999999983
No 2
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=285.06 Aligned_cols=190 Identities=18% Similarity=0.178 Sum_probs=171.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHH
Q 025373 57 LLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136 (254)
Q Consensus 57 ~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K 136 (254)
++.+.+..+++.|+..-+.--..||+.+++|+||+|.+||+||+.||+++|.+||..+||++|+++||||| |+|...+|
T Consensus 92 Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETy-gsm~~~ek 170 (439)
T KOG1498|consen 92 MVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETY-GSMEKSEK 170 (439)
T ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhh-hhhHHHHH
Confidence 34444455566665444555578999999999999999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCC
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDET 215 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ 215 (254)
++|+|+||||||-.+||++|.++.+|++.++|+. +-++|||.||.+|+|+.-|.+.||++|++|++||.++. ..
T Consensus 171 V~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~-----vk 245 (439)
T KOG1498|consen 171 VAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGN-----VK 245 (439)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccc-----cc
Confidence 9999999999999999999999999999999875 45799999999999999999999999999999999832 33
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhcc
Q 025373 216 IDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKVN 252 (254)
Q Consensus 216 ide~er~~~L~~Av~caILApagp~RSrlL~~LykDe 252 (254)
-|+++|...|.++|.+++|||++|++|++++++..|.
T Consensus 246 ~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dK 282 (439)
T KOG1498|consen 246 EDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDK 282 (439)
T ss_pred cChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhccc
Confidence 3999999999999999999999999999999998774
No 3
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.9e-29 Score=229.19 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=169.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHH
Q 025373 57 LLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136 (254)
Q Consensus 57 ~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K 136 (254)
++..+...++..++=.-+.--..+|+.+++|+||+|.+++++++.|..+||.+||+++|+++|+..||||+ ++|.-.+|
T Consensus 92 MIq~vmEylKg~~dl~t~i~~ietlr~VtEgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETy-gs~~~Sek 170 (439)
T COG5071 92 MIQHVMEYLKGIDDLKTKINLIETLRTVTEGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETY-GSFDLSEK 170 (439)
T ss_pred HHHHHHHhccCcccccchHhHHHHHHHHhcCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhc-cchhHHHH
Confidence 33444444555442233455568999999999999999999999999999999999999999999999999 69999999
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCC
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDET 215 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ 215 (254)
+.|+++|+|||+-.+||.+|.++.+|+..++++. +-+.+||.||.+..||.-|+|+|+++|+.|+++|+|.. ..
T Consensus 171 v~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~-----~~ 245 (439)
T COG5071 171 VAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAV-----VQ 245 (439)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHH-----hc
Confidence 9999999999999999999999999999999874 45799999999999999999999999999999999743 34
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhcc
Q 025373 216 IDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKVN 252 (254)
Q Consensus 216 ide~er~~~L~~Av~caILApagp~RSrlL~~LykDe 252 (254)
-|+..|...|++.+.++||+|+|+++.++++.+..|-
T Consensus 246 ~d~Akwk~VLS~~v~F~iLtpy~neq~dlvhKi~~d~ 282 (439)
T COG5071 246 EDPAKWKEVLSNVVCFALLTPYDNEQADLLHKINADH 282 (439)
T ss_pred cCcccccchhhcceeeEEecccccHHHHHHHHhhhhh
Confidence 4999999999999999999999999999999987763
No 4
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.69 E-value=2.9e-07 Score=79.35 Aligned_cols=115 Identities=21% Similarity=0.158 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 88 VVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 88 ~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.-..++++......|++.|.+-||+.+|.+....+.= ...+...|+++++.++|+++.-+||..+..|++|+..++
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~----~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARD----YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4467888888899999999999999999999998332 345788999999999999999999999999999999999
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 168 SSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 168 ~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
....|++.+.+++.+.+-..-..|+|-+||+.|.+...+
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 888899999999999999999999999999999999775
No 5
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.14 E-value=0.23 Score=45.11 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCC---CCCCCc
Q 025373 55 RQLLQTFAQELGRL--EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID---LDSGMR 129 (254)
Q Consensus 55 R~~l~~~~~~l~~l--~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~---lEt~~~ 129 (254)
-.++..+...+.+. +.+..++.-+.+++...... -..........+|.++-..|+|.+|.+++..+- +++..
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l- 190 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL- 190 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-
Confidence 34556677777665 56666777777777654332 345667788899999999999999999998652 33321
Q ss_pred cCChHHHH-HHHHHHHHHhhcccchhhHHHHHhhhhhhccc-CcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 130 VIDDTFRL-SKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 130 ~~s~~~K~-~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~-~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
. .+.+ +.|++.+=++|-.||++.|+..+++.....+. .+..+-++-....-|-=---...|-++.+.|-.|+..
T Consensus 191 --~-~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l- 266 (282)
T PF14938_consen 191 --L-KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL- 266 (282)
T ss_dssp --T-GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred --c-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc-
Confidence 1 2334 37899999999999999999999998877644 2345666666666665555567899999999999886
Q ss_pred hhhcCCCCCCHHHHHHHHHHHH
Q 025373 208 KRQIGDETIDEEALEQALSAAV 229 (254)
Q Consensus 208 ~~~~~~~~ide~er~~~L~~Av 229 (254)
+.|+..+-.-|
T Consensus 267 -----------d~w~~~~l~~~ 277 (282)
T PF14938_consen 267 -----------DNWKTKMLLKI 277 (282)
T ss_dssp ------------HHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH
Confidence 66776664444
No 6
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.03 E-value=0.071 Score=43.43 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
+..||+++-..|++.+|...|..+--.+. ++..+--..++.+++++..+++..|...++.+ .++...-.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~----d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~ 119 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAP----DPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHH
Confidence 55699999999999999999998665442 44567778899999999999999999998762 23444566
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Q 025373 179 YKVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~e 202 (254)
+..+.+.|+-...++=+|-..|..
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888999999999999999888864
No 7
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.17 Score=48.71 Aligned_cols=172 Identities=17% Similarity=0.100 Sum_probs=123.0
Q ss_pred CCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCC
Q 025373 47 DDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDS 126 (254)
Q Consensus 47 ~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt 126 (254)
++..+.+-+.+|..+.+. +.+-.+++- ..++.-.+. -=|.++...-...|+.|.+-||-..|-+.+-. |
T Consensus 62 e~~~i~~D~~~l~~m~~~----neeki~eld-~~iedaeen--lGE~ev~ea~~~kaeYycqigDkena~~~~~~----t 130 (393)
T KOG0687|consen 62 ESLVIKLDQDLLNSMKKA----NEEKIKELD-EKIEDAEEN--LGESEVREAMLRKAEYYCQIGDKENALEALRK----T 130 (393)
T ss_pred hhcceeccHHHHHHHHHh----hHHHHHHHH-HHHHHHHHh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHH----H
Confidence 355566667666666543 111112221 111111111 12555666666789999999999988888875 6
Q ss_pred CCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 127 GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 127 ~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+.+.|+-..|+++..-.+|+-|=-.|..--.-.+.||+.++.+-.|++=+.+||+.++-+.-+.|+|=+||.=+.+.--|
T Consensus 131 ~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 131 YEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 66788888999999999999888888888889999999999888999999999999999999999999999998887443
Q ss_pred hhhhcCCCCC-CHHHHHHHHHHHHHHHhcCC
Q 025373 207 QKRQIGDETI-DEEALEQALSAAVTCTILAA 236 (254)
Q Consensus 207 ~~~~~~~~~i-de~er~~~L~~Av~caILAp 236 (254)
=. +..+ += -.+..-+|+|.+++-
T Consensus 211 Ft----S~El~~Y---~~~v~Ytv~~g~i~l 234 (393)
T KOG0687|consen 211 FT----SYELMSY---ETFVRYTVITGLIAL 234 (393)
T ss_pred cc----ceecccH---HHHHHHHHHHhhhee
Confidence 10 2222 32 246666777777653
No 8
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.16 Score=48.40 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
=|.+.+..-..+|+.|.+-+|...+-+.+.. +..+.|+-.-|+++.+-++||-+=-+|----+--+.+++.++..-
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~----~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRR----LMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 3667778888899999999999888887764 333456666799999999999999999888899999999999888
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.|++=+.+||..+.-..-.+|+|-+||.=.-++--|
T Consensus 186 gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 186 GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 899999999999999999999999999988887544
No 9
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=93.96 E-value=2.8 Score=33.97 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcccchHHHHH
Q 025373 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQE-LGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (254)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~-l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a 96 (254)
...|..++..+ ..++...+...++.+..+.-+..-.-...-.+... +..-+-+..+..-..++..- +.. .=..
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~----~l~~ 85 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDP----ELKP 85 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCH----HHHH
Confidence 45688777766 35566666666666664444332221111112222 22223334455544555433 111 1123
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhh
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKa 163 (254)
..+..||.++..+|++.+|-..|..++-++ ++-.++.-...+|+..||+..|.....+|
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIPDEA--------FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 446679999999999999999997754322 44557777899999999999999888765
No 10
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.84 E-value=0.55 Score=35.19 Aligned_cols=102 Identities=10% Similarity=-0.054 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
....++..+...|++.+|.+.+..+--.... .......+...++.|++.+++..|..+++++.....+.. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP---KAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC---ccc
Confidence 3467888999999999999999776322111 123355778899999999999999999999987664321 122
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 178 ~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.....+++++....++-+|.+.|.++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33556677777888888888888888775
No 11
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.53 E-value=0.14 Score=35.71 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=49.5
Q ss_pred HhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHH
Q 025373 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARI 186 (254)
Q Consensus 107 E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari 186 (254)
-++|+|.+|.+.+..+--... .-.++++..+++|++.|++..|+.+++++.....+ .-.|+..+|+|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~------~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-------DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD------NPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-------TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT------HHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------HHHHHHHHhcC
Confidence 367999999999988522211 14568889999999999999999999998876654 24566666654
No 12
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.81 E-value=0.89 Score=32.55 Aligned_cols=68 Identities=15% Similarity=0.002 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE-VLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~-~LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
...|-.++..|.+.+++.+|..+.+|+..+.....+. ......+..++.++....+|=+|-..|.+-.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678899999999999999999999999985444333 3358889999999999999888777766543
No 13
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.63 E-value=8.5 Score=41.23 Aligned_cols=132 Identities=16% Similarity=0.104 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCCh
Q 025373 54 SRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 133 (254)
Q Consensus 54 sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~ 133 (254)
-|++|..-...+-.-+-+...+++.++++......+.| ..||.|||..||..+|-..+--. -.+.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay--------~tL~~IyEqrGd~eK~l~~~llA------AHL~p 204 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAY--------YTLGEIYEQRGDIEKALNFWLLA------AHLNP 204 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhH--------HHHHHHHHHcccHHHHHHHHHHH------HhcCC
Confidence 45666655544444556677888888888655444444 67999999999999987654321 12333
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 134 ~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+ ++|.+-+.+..+-|.+-+|..+.+||-..-+ ++..+...+-. +++--.+.-.|...|..|...
T Consensus 205 ~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~----L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 205 KDY-ELWKRLADLSEQLGNINQARYCYSRAIQANP--SNWELIYERSS----LYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred CCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--cchHHHHHHHH----HHHHhChHHHHHHHHHHHHhh
Confidence 344 8999999999999999999999999976554 34444444433 444445555688888888875
No 14
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.36 E-value=6.3 Score=39.80 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHHHHH
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQIARL 146 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~---I~lEt~~~~~s~~~K~~~~l~i~rL 146 (254)
-+....++..+|+.+..++..-..-++.....+|.+|-..+++.+|+.++.. |.-+++ |.+.+ -=..++.+.+-+
T Consensus 215 ~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-G~~h~-~va~~l~nLa~l 292 (508)
T KOG1840|consen 215 LEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-GEDHP-AVAATLNNLAVL 292 (508)
T ss_pred HHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-CCCCH-HHHHHHHHHHHH
Confidence 4556888899999987777766667777788899999999999999999875 555555 34333 347789999999
Q ss_pred hhcccchhhHHHHHhhhhhhccc---CcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 147 YLEDDDAVNAEAFINKASFLVSS---SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 147 ~Le~~D~~~Ae~~~nKas~~~~~---~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
|...|++..|+.|+.||..+... ...+++.-.+- ..+-++-++.+|-+|..-|...
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~-~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS-ELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH-HHHHHHHHhcchhHHHHHHHHH
Confidence 99999999999999999998854 34455544443 3444566777777777666543
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.30 E-value=2.3 Score=28.38 Aligned_cols=90 Identities=17% Similarity=0.032 Sum_probs=60.1
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
..+|.++...|++.+|.+.+..+--... ... ..+...+..|...+++..|..+++++....... . ..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~ 70 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP-----DNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--A----KA 70 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC-----ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h----hH
Confidence 4678888999999999999876421111 111 678889999999999999999999987765432 2 33
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Q 025373 180 KVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~e 202 (254)
....+.++-...++-+|-..+..
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555445555444444433
No 16
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=92.21 E-value=0.041 Score=55.26 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
++...++-.-|+.+-.+|+|..|..+|..|+.. .+++..+.+..+=.+++.+..+++..|-..++....... .
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~----~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l---~ 93 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQ----QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQL---P 93 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc----cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccC---C
Confidence 667778888899999999999999999998843 457788999999999999999999999999987433322 3
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.....+|+...|+++...++.++|++.+-.++..
T Consensus 94 ~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 94 PEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999999999998874
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.81 E-value=10 Score=34.75 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
......|+.++...|+|.+|.+.+..+.-... .-.......+|...+..|++.+++..|..+.+++-....+ +
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~--- 213 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGG--DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ--C--- 213 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC--C---
Confidence 34567889999999999999888876532111 1111234557888999999999999999999998765432 1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..-+...++++....+|-+|-.-|.++...
T Consensus 214 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 214 -VRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 223456788888889998888888877653
No 18
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.36 E-value=0.95 Score=45.85 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=61.5
Q ss_pred HHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhh-cccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhh
Q 025373 113 SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL-EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR 191 (254)
Q Consensus 113 ~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~L-e~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~r 191 (254)
.-|-++|..+=- +..++++..+.+++|++++++ |.++...||+|++|+-.+.....-.++|..-..+.+|++--.+
T Consensus 38 ~~ai~CL~~~~~---~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 38 ATAIKCLEAVLK---QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC
Confidence 334444444322 358899999999999999999 7899999999999998888765666888888888899887655
Q ss_pred hHH
Q 025373 192 KFL 194 (254)
Q Consensus 192 kFL 194 (254)
...
T Consensus 115 ~~~ 117 (608)
T PF10345_consen 115 PKA 117 (608)
T ss_pred HHH
Confidence 433
No 19
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.09 E-value=4.4 Score=31.49 Aligned_cols=97 Identities=13% Similarity=-0.089 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......++..+...|++.+|.+.+..+ +.++. -...|...+.+|+..+++..|..+++++.....+ +
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~-- 84 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD--D-- 84 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C--
Confidence 344577888999999999999988763 22221 2468889999999999999999999988766432 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..++...+.++....+|-+|.+.|......
T Consensus 85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 --PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222334566777788999999988888775
No 20
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.38 E-value=1.4 Score=31.52 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhcc-CCC-CCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSG-IDL-DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~l-Et~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.+.+-..||.+|...|+|.+|-+.+.. +++ ++.+ . +...-+..|..++.+|...||+..|..+.+|+-.+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-D-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-T-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456668899999999999999887754 222 2221 1 223468999999999999999999999999986653
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.86 E-value=2.7 Score=34.14 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
+.+.....++..+...|++.+|.+.+... ..+. .....+...+.+|...+|+..|..+.+++-..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP--------DDYLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34555566666666666666666665532 1111 11345555666666666666666666666544
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.75 E-value=9.4 Score=30.86 Aligned_cols=167 Identities=15% Similarity=0.108 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Q 025373 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 97 (254)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~ 97 (254)
...|..+-......++.+.....++..+...-........+..+..... +.+...+....++..- |. ...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~-~~-------~~~ 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG--ELEKAEDSFRRALTLN-PN-------NGD 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhC-CC-------CHH
Confidence 4456666666666667755555555554332222222222222222221 3344455555555532 21 124
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
....++.++...|++.+|.+.+...-- .. ........|...+..|.+.+++..|..+++++...... +.
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~---- 169 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIE-DP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RP---- 169 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh-cc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--Ch----
Confidence 567789999999999999998877431 11 01123456778899999999999999999998776543 22
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 178 ~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.....+++++-..++|-+|...|.+.-.
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344678888888888887777666555
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.96 E-value=18 Score=33.08 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
....|+.+|...|++.+|.+.+..+.- .++......+...+..|.+.|++..|..+++++....++ .. .
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~--~ 284 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEE------QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG---AD--L 284 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH------HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ch--H
Confidence 344566677777777777766666421 122334455666677777777777777777776554321 11 1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 178 ~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+ ...++++-...++-+|-.-|.+...
T Consensus 285 -~-~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 285 -L-LALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred -H-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 5567777777777766666665544
No 24
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=88.63 E-value=5.4 Score=40.71 Aligned_cols=119 Identities=20% Similarity=0.091 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhh
Q 025373 76 IANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVN 155 (254)
Q Consensus 76 v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~ 155 (254)
-+++-|..++- +-++|-...+-.=+++.-++|+...|+.+|..+|+ .++|..|++.-+=-++|.|...++..
T Consensus 46 ~s~~yl~qa~q---s~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~-----~Ltd~Q~~~~~LL~ael~la~~q~~~ 117 (604)
T COG3107 46 SSQFYLQQAQQ---SSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQ-----ELTDAQRAEKSLLAAELALAQKQPAA 117 (604)
T ss_pred hHHHHHHHHhh---cCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHhccChHH
Confidence 34455555542 23377788888889999999999999999999987 46889999999999999999999999
Q ss_pred HHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 156 AEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 156 Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
|..++.+.++--... --+.+|+...|.++-.+..-+++++..-...-
T Consensus 118 Al~~L~~~~~~~ls~---~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~ 164 (604)
T COG3107 118 ALQQLAKLLPADLSQ---NQQARYYQARADALEARGDSIDAARARIAQDP 164 (604)
T ss_pred HHHHHhhcchhhcCH---HHHHHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 999999887644331 24899999999999999999999998766654
No 25
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.46 E-value=1.5 Score=30.34 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=45.7
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.+|..+...|+|.+|.+.+..+--... .-.+.|...+++++..|++..|..+..++-...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP-------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 478888899999999998887433221 256788888999999999999999988876543
No 26
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.99 E-value=1.2 Score=30.97 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhccc-chhhHHHHHhhhh
Q 025373 100 EKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDD-DAVNAEAFINKAS 164 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~-D~~~Ae~~~nKas 164 (254)
..++.++...|+|.+|...+.. |.++ +. -...|..++..|.+.+ ++.+|..+.+++-
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-------PN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-------CC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4455555555555555554433 1111 11 1335555555555555 4555555555543
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=87.65 E-value=39 Score=35.27 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
+.......+|.++...|++.+|.++|..+.-... .. .++++..+.++...|++..|+..++++..+.++ +
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P------~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd--~- 426 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP------GN-QGLRIDYASVLQARGWPRAAENELKKAEVLEPR--N- 426 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C-
Confidence 4456777899999999999999999998632221 11 469999999999999999999999999887754 2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..++..+|..+...++|=+|-.-+.++...
T Consensus 427 ---~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 427 ---INLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 234556666788888899998888888775
No 28
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=87.61 E-value=3.4 Score=37.45 Aligned_cols=97 Identities=13% Similarity=-0.007 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
....++.+++..|++.+|.+.+... + ...++. ...+...+..|.+.|++..|..++.++...... ++....
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~a-l-----~~~p~~-~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~ 186 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRA-L-----ELNPDD-AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRG 186 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-H-----hhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhH
Confidence 3445666777777777666655441 0 111111 345555666677777777777777666554432 334445
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 178 QYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 178 ~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
+.+...|+++-...++=+|-..|.+.
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55566666666666666666666654
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=87.01 E-value=8.2 Score=33.08 Aligned_cols=112 Identities=12% Similarity=0.031 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 90 s~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
+..++.......++..+...|+|.+|...+..+--.... ...-.+.+...+..|+..+++..|..+.+++....++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 667888889999999999999999999999875222211 1133456888899999999999999999999887764
Q ss_pred CcchhHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHhh
Q 025373 170 SQQEVLNLQYKVCYARILD------LKRKFLEAALRYYDISQI 206 (254)
Q Consensus 170 ~~d~~LkL~yk~~~ari~d------~~rkFLeAa~rY~els~~ 206 (254)
...-. ...|..-.+.... ...++-+|-..|..+...
T Consensus 103 ~~~~~-~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 HPDAD-YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCchH-HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 32211 1233333332211 225566666666666553
No 30
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=86.02 E-value=26 Score=31.71 Aligned_cols=187 Identities=10% Similarity=0.031 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHhhcCCCH-HHHHHHHHHH-hcCCc-chHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchH
Q 025373 16 QKIEQYKHILSSVISSNDI-VQAKKFIDHM-LSDDV-PLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFE 92 (254)
Q Consensus 16 ~~~~~y~~ll~~i~~~~~~-~~l~~~i~~~-~~~~v-~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~E 92 (254)
+-.+.|...-+.....++. ....+|.... ..... .---.-+.+......++..+++..++....+++..+ ...--
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~--~~G~~ 110 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYR--EAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HCT-H
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--hcCcH
Confidence 3456777777766655544 5666676663 11111 122333445556666777777777777777776543 12233
Q ss_pred HHHHHHHHHHHHHHHhh-ccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 93 EQVLIIREKLADLYESE-QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~-~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
.+.+.+-..+|++||.. |++.+|.+.... -+|-+...=+...-.+.+++++.++.+.+++..|-....++.....+.+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~-A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQK-AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHH-HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 56688889999999999 999887776543 1111110113445678999999999999999999999999877654422
Q ss_pred chhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 172 QEVLNL-QYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 172 d~~LkL-~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
...... .|....+=+.-...+...|-..|...-.
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222222 1333333344445667777666666543
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=85.39 E-value=12 Score=40.81 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
+...||.+++..|++.+|...+..+---.. .-.+.++..+++|...+++..|..+++++..... ++..
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P-------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p--~~~~--- 672 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREP-------GNADARLGLIEVDIAQGDLAAARAQLAKLPATAN--DSLN--- 672 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CChH---
Confidence 345577777777777777776655322111 1245677888888888999999988887654332 2222
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 178 ~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
....+++++....++=+|.+.|..+-.
T Consensus 673 -~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 673 -TQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 344578888888899898888888755
No 32
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=85.08 E-value=3.7 Score=38.11 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.++-..|.++-.+|++.+|-++|... ..+|...=.|.+||..+.+.-|+..+++.... ++..+-
T Consensus 103 ~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l 166 (290)
T PF04733_consen 103 IVQLLAATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSIL 166 (290)
T ss_dssp HHHHHHHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHH
Confidence 45667789999999999999999762 22455556777888899999999888776532 444556
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+.-..+.-+.....++=+|-.-|.|++.+
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 666666666666667777777777777775
No 33
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=84.63 E-value=18 Score=31.30 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHH-Hhhcccc--hhhHHHHHhhhhhhcccCcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIAR-LYLEDDD--AVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~r-L~Le~~D--~~~Ae~~~nKas~~~~~~~d 172 (254)
......|+.+|...|++.+|...+.. -..+.+ ...+++...+. +|...|+ +..|...++++-.+-++.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~------Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~-- 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQ------ALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE-- 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH------HHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--
Confidence 44567789999999999999988864 112222 35778888888 5677777 589999999988776542
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
.......|..+....+|=+|-..|..+-...
T Consensus 144 ----~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 144 ----VTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455677888888999999999999987753
No 34
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=84.61 E-value=31 Score=31.24 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas 164 (254)
...-..|+.++...|+|.+|...+... +.... +.......|.-.++++++.||+..|..+++++.
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345677899999999999999998753 22221 234556788899999999999999999999984
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=84.00 E-value=2.5 Score=31.52 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
..+..++.++...|++.+|.+.+..+. ....+ ......+...++.|...+++..|..+++++....++
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS-----PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-----CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 455679999999999999999999754 22221 134567889999999999999999999999887654
No 36
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.89 E-value=9.2 Score=26.41 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHH
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR-KFLEAALRYYDI 203 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~r-kFLeAa~rY~el 203 (254)
..++|...+..++..+|+..|..+.+|+..+-++ +.. ...-++.++-... +|-+|-..|...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~----~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAE----AYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHH----HHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH----HHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4678999999999999999999999999887543 222 3344455555555 677766665544
No 37
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=82.39 E-value=2.2 Score=31.25 Aligned_cols=60 Identities=22% Similarity=0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKa 163 (254)
...-..||.+|-..|+|.+|-.++...+++.. . .+...-+++.|++-+++..|...+.|+
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~-------~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQKLKLDPS-------N-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHC-------H-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCC-------C-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34455699999999999999999988322221 2 233334499999999999999988775
No 38
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=81.76 E-value=57 Score=32.27 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 92 Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
....+.+...++.++...|++.+|.+.+..+. .+.. -...|+..+.++++.+++..|..+++++......
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~- 191 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--------SLYAKLGLAQLALAENRFDEARALIDEVLTADPG- 191 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 34556666778888888888888888887542 1111 1346788888899999999999988887554322
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+ .......++++-..++|-+|...|......
T Consensus 192 -~----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 192 -N----VDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred -C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 234455677888888888888888777553
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=80.89 E-value=5.4 Score=26.48 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
.+...++.++-..|++.+|.+.+... ..... .. ..+...+.+++..+|+..|..+++++...
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NA--KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------ch--hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 45567899999999999999988652 22211 11 68889999999999999999999887543
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=79.85 E-value=11 Score=25.72 Aligned_cols=59 Identities=22% Similarity=0.140 Sum_probs=47.7
Q ss_pred HHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 142 QIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 142 ~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..++.+++.+|+..|...++++-....+ ........++++....+|-+|..-|.+.-..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5688999999999999999998877643 4566777899999999999999777776553
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=78.93 E-value=12 Score=29.07 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
......++..+...|++.+|...+... ..+ ......|...+.+|...+|+..|..+.+++..+..+
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 466678899999999999999877652 221 123567788888999999999999999999887753
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=78.28 E-value=16 Score=39.81 Aligned_cols=103 Identities=15% Similarity=0.016 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
...+..|+.+|...|++.+|.+++..++ +... .-...+...++.+.+.|++..|..+++++.....+.....-
T Consensus 637 ~~a~~~la~~~~~~g~~~eA~~~l~~ll-~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 637 ADARLGLIEVDIAQGDLAAARAQLAKLP-ATAN------DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHh-ccCC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 4567788999999999999999998653 2111 23356778899999999999999999999876643221101
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
....+.-.|+++..+.++-+|...|..--.
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 123344559999999999999988887753
No 43
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=77.73 E-value=3.1 Score=29.14 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=25.9
Q ss_pred HhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 146 LYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 146 L~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.|+..+||..|..++.++..+.++ ....+...|+++-..++|-+|-..|.....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555554332 122223344445555555555555555544
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=77.19 E-value=23 Score=37.79 Aligned_cols=96 Identities=7% Similarity=-0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.....+|.++..+|+|.+|.+++..+--... +. .+++.-.+.+|++.+.+..|..+++|+.....+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP-----~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~------- 168 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDP-----TN--PDLISGMIMTQADAGRGGVVLKQATELAERDPT------- 168 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-------
Confidence 4556678999999999999999988632222 11 345566699999999999999999998777543
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..++...+.++....++.+|...|.++...
T Consensus 169 ~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 169 VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 333466677776777888888888888875
No 45
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=76.47 E-value=80 Score=30.90 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc--chhHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHhhhhh
Q 025373 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ--QEVLNLQYKVCYARILDLKRKFLEA---ALRYYDISQIQKR 209 (254)
Q Consensus 135 ~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~--d~~LkL~yk~~~ari~d~~rkFLeA---a~rY~els~~~~~ 209 (254)
.=..+-+.|+|++|+.+|-..++..+-..+....... .+...-.||..-..++-.+++|-+. |.+|...+..
T Consensus 113 av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~--- 189 (380)
T KOG2908|consen 113 AVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDI--- 189 (380)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccc---
Confidence 3455678999999999999999999988887664322 2335677888888888888887554 4455555542
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHhcCC
Q 025373 210 QIGDETIDEEALEQALSAAVTCTILAA 236 (254)
Q Consensus 210 ~~~~~~ide~er~~~L~~Av~caILAp 236 (254)
..+.+++|.+.-=--...|+|+.
T Consensus 190 ----~~l~~se~~~lA~~L~~aALLGe 212 (380)
T KOG2908|consen 190 ----DDLSESEKQDLAFDLSLAALLGE 212 (380)
T ss_pred ----cccCHHHHHHHHHHHHHHHHhcc
Confidence 44566766544333344566654
No 46
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.46 E-value=4.4 Score=24.35 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.++|..++.+|...+|+..|..+.+|+..+-
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999987653
No 47
>PLN03077 Protein ECB2; Provisional
Probab=76.41 E-value=90 Score=32.70 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
-..|.+++...|++.+|-+++.++|++.. ..+|--...-|--.++...||...+++-.+-++ ...
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m~~~pd---------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~------~~~ 692 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKMPITPD---------PAVWGALLNACRIHRHVELGELAAQHIFELDPN------SVG 692 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------Ccc
Confidence 35578889999999999999999875543 346766677776677787888776666554332 356
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
||.+++.++-..+++-+|++-...+-.
T Consensus 693 ~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 693 YYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888899999999999998887766643
No 48
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=76.04 E-value=43 Score=36.55 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=72.0
Q ss_pred HHHHHHHHH--HHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 94 QVLIIREKL--ADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 94 q~a~lr~~L--A~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
|+.++...+ |..+..+|||.+|-..+... + ..+++. ..++...+++|+.-|++.+|+.++.|+..+-. +
T Consensus 40 ~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~A-l-----~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~ 110 (987)
T PRK09782 40 RHFVIYPRLDKALKAQKNNDEATAIREFEYI-H-----QQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--G 110 (987)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-H-----HhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--c
Confidence 444443333 55667779999999888763 1 223334 77889999999999999999999999988754 2
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
...|+...+.| .+|-+|+.-|.++....
T Consensus 111 ----n~~~~~~La~i----~~~~kA~~~ye~l~~~~ 138 (987)
T PRK09782 111 ----DARLERSLAAI----PVEVKSVTTVEELLAQQ 138 (987)
T ss_pred ----cHHHHHHHHHh----ccChhHHHHHHHHHHhC
Confidence 34444545766 88889999999998863
No 49
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=75.71 E-value=39 Score=33.92 Aligned_cols=99 Identities=21% Similarity=0.119 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
..+.....++.++...|++.+|-..+... .++.. -...|+..+.+|++.+++..|..++.++-.+- .++
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~--------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~ 398 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR--------VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SED 398 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 34455677888999999999999988762 22221 13578899999999999999999999985553 233
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++ .+...+.++-...+|-+|-..|...-..
T Consensus 399 ~~----~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 399 PD----IYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33 3345677777888888888888776554
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=75.44 E-value=9.3 Score=40.95 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
..+.+.-|-..+|+.+-..|.+.+|-+.|..|- -|+++ -.-+|.+++|+|++-+.+..|--+.+|+-.+.++
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-------NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 366777888999999999999999999998863 33333 2679999999999999999999999999887765
Q ss_pred C
Q 025373 170 S 170 (254)
Q Consensus 170 ~ 170 (254)
.
T Consensus 482 ~ 482 (895)
T KOG2076|consen 482 N 482 (895)
T ss_pred c
Confidence 3
No 51
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=75.40 E-value=89 Score=30.93 Aligned_cols=167 Identities=17% Similarity=0.068 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHH
Q 025373 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (254)
Q Consensus 17 ~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a 96 (254)
..+.+-..-...+..++.+.-...+...+.-.-...-.+-.+........+. +........+++. .|. ..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~-~~~-------~~ 90 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDY--AAAEKELRKALSL-GYP-------KN 90 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc-CCC-------hh
Confidence 3344555555555666664444444444333333334444444444333332 2233333333331 111 13
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
..+..++.++...|++.+|...+...+.. ++....+.+..++..|...+++..|..+++++-..... +.+
T Consensus 91 ~~~~~~a~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~-- 160 (899)
T TIGR02917 91 QVLPLLARAYLLQGKFQQVLDELPGKTLL------DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLY-- 160 (899)
T ss_pred hhHHHHHHHHHHCCCHHHHHHhhcccccC------CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--Chh--
Confidence 45677899999999999999999875432 23456778999999999999999999999999765443 222
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
-+...|+++-..++|-+|-..+.++-.
T Consensus 161 --~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 161 --AKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred --hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234567777777777777666665543
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=75.24 E-value=98 Score=31.35 Aligned_cols=85 Identities=20% Similarity=0.080 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcC
Q 025373 133 DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 212 (254)
Q Consensus 133 ~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~ 212 (254)
+...+=+|.=++..|-..||+..|-.|+++|-...+. .+-++..-|||+-|..+|-+|+..+-+-..
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~------- 256 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEARE------- 256 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------
Confidence 3345556677799999999999999999998776543 367899999999999999999988777665
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc
Q 025373 213 DETIDEEALEQALSAAVTCTIL 234 (254)
Q Consensus 213 ~~~ide~er~~~L~~Av~caIL 234 (254)
.|..|| -.-+.++.+.+-
T Consensus 257 ---LD~~DR-yiNsK~aKy~LR 274 (517)
T PF12569_consen 257 ---LDLADR-YINSKCAKYLLR 274 (517)
T ss_pred ---CChhhH-HHHHHHHHHHHH
Confidence 577887 233445554444
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=73.97 E-value=74 Score=30.29 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=49.7
Q ss_pred HHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHH
Q 025373 103 ADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVC 182 (254)
Q Consensus 103 A~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~ 182 (254)
|.+-...|++.+|-+.|... ...+++..+...+..+++++..+|+..|..+.++.....++ ++ .....
T Consensus 125 A~aA~~~g~~~~A~~~l~~A------~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~--~~----~al~l 192 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERA------AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR--HP----EVLRL 192 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHH------HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CH----HHHHH
Confidence 33336677777777777663 12233344445556677777777877777777777655533 22 11222
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHh
Q 025373 183 YARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 183 ~ari~d~~rkFLeAa~rY~els~ 205 (254)
.++++-..+++=+|..-+..+-.
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 23333344555555544444444
No 54
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=73.80 E-value=7.7 Score=33.55 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=51.1
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTI 233 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caI 233 (254)
...+...||+...-||+|...+-=.--+.+|+||-+++.......-|.++++.+|-.|=.|||
T Consensus 58 Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC~~a~LPedp~D~~~~l~vlv~AE~CAi 120 (172)
T COG2406 58 AREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGCKPAYLPEDPYDIDEILAVLVKAERCAI 120 (172)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 445889999999999999988877777899999998762222223388999999999999998
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=73.72 E-value=1.1e+02 Score=31.23 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
..+-+.|...|++.+|-+++..+|.... ..+|--.+..|-..++...|+...++...+-++ ....
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~~~p~---------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~------~~~~ 530 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAPFKPT---------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE------KLNN 530 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCCCCCC---------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC------CCcc
Confidence 3477889999999999999988765543 236888999999999999999988877443322 2345
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
|.+++.++-...++-+|.+=+.++-..
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 788899999999999999988887654
No 56
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=73.54 E-value=9.5 Score=27.78 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred hccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHh
Q 025373 109 EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILD 188 (254)
Q Consensus 109 ~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d 188 (254)
+|+|.+|......+-=.+. ....-.+|..++.+|...+++.+|-.++++ .. . +......+| ..|+.+-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~---~~~~~~~~~--l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-L---DPSNPDIHY--LLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-H---HHCHHHHHH--HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-C---CCCCHHHHH--HHHHHHH
Confidence 5777777776554321111 012556888999999999999999999998 11 1 111233444 4477777
Q ss_pred hhhhHHHHHHHHH
Q 025373 189 LKRKFLEAALRYY 201 (254)
Q Consensus 189 ~~rkFLeAa~rY~ 201 (254)
.-.+|=+|-..|-
T Consensus 70 ~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 70 KLGKYEEAIKALE 82 (84)
T ss_dssp HTT-HHHHHHHHH
T ss_pred HhCCHHHHHHHHh
Confidence 7777777665553
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=72.58 E-value=25 Score=29.12 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+.....++..+...|++.+|...+... .+.. +..+....|...+.+|...|++..|..++.++-.+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 445678899999999999999988753 1111 1123567899999999999999999999999987654
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=70.60 E-value=80 Score=30.88 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhccHHHHHHH---hccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 98 IREKLADLYESEQQWSKAAQM---LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~v---L~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
-+++|..||.++-||.+|-++ |..+.=++++ -+=..||-+-+..++..+|..+|-..++||-.--.+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~-----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR-----VEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch-----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 467899999999999998766 4454444432 356789999999999999999999999998665444
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=70.59 E-value=1.2e+02 Score=30.12 Aligned_cols=155 Identities=19% Similarity=0.125 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHh---cCCcchHhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCcccchH
Q 025373 17 KIEQYKHILSSVISSNDIVQAKKFIDHML---SDDVPLVVSRQLLQTFAQELGRL-EPETQKEIANYTLAQIQPRVVSFE 92 (254)
Q Consensus 17 ~~~~y~~ll~~i~~~~~~~~l~~~i~~~~---~~~v~lv~sR~~l~~~~~~l~~l-~~~~~~~v~~~~L~~i~~~~is~E 92 (254)
+...|..+|++.-+.+..++|+.+-..+- ..+..++ ..++..+-.+ .++..+++..++|...-+..
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~------~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---- 297 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV------VAYAERLIRLGDHDEAQEIIEDALKRQWDPR---- 297 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH------HHHHHHHHHcCChHHHHHHHHHHHHhccChh----
Confidence 34578999999988888888888887764 2334443 4566666666 46778899899988764333
Q ss_pred HHHHHHHHHHHHHH-HhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 93 EQVLIIREKLADLY-ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~-E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
|......+. +..+..-++++-+..-.-|+. .++.---|||+..++|.+|+.|++++...-.+..
T Consensus 298 -----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p----------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 298 -----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP----------LLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred -----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh----------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 222222222 333444445444443111111 5778889999999999999999997766665533
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
| +...|..+|.-.+--+|.+.|.|-
T Consensus 363 ~-------~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 363 D-------YAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred h-------HHHHHHHHHHcCChHHHHHHHHHH
Confidence 3 345677777777766777666664
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=70.43 E-value=48 Score=34.59 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCC--------CccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 99 REKLADLYESEQQWSKAAQMLSGIDLDSG--------MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~lEt~--------~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
...|+.++...|++.+|...|..+.-... ....+++.+.+.+...+.++...||+..|+..+.++....+.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~- 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG- 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 45667788999999999999776543321 123455578888999999999999999999999999776543
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+.. .....|.++..+.++-+|-+.|......
T Consensus 392 -n~~----l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 392 -NQG----LRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred -CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 333 3456777888888888887777777664
No 61
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.04 E-value=59 Score=30.81 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
..+-.=|.+|..+|++.+|-+.+-. +++ ++...=.+...|..+-..-|+.-++|.. +.+++.+-
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~--~~~----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq----~ided~tL 172 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL--GEN----------LEAAALNVQILLKMHRFDLAEKELKKMQ----QIDEDATL 172 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc--cch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccchHHHH
Confidence 3445558899999999999999877 222 2233333333444444444554444432 23344444
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.+--..++.+....-+.-||---|.|+|.
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~ 201 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSE 201 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhc
Confidence 44556666666666666666666666666
No 62
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=68.69 E-value=5.4 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.9
Q ss_pred HHHHHHHHhhccHHHHHHHhcc
Q 025373 100 EKLADLYESEQQWSKAAQMLSG 121 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~ 121 (254)
..|+.+|...|+|.+|.++...
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3689999999999999987653
No 63
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=68.56 E-value=9.9 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.+.|..++.+|+..+++..|..+.+|+-.+-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3689999999999999999999999987654
No 64
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.81 E-value=11 Score=22.37 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+.|-.++..|...+++..|..+.+|+-.+-.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5788999999999999999999999876643
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=67.69 E-value=67 Score=26.29 Aligned_cols=70 Identities=13% Similarity=-0.022 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
..+.....++..+...|++.+|-..+... .+... .......|..++.+|...+++..|..++.++-.+..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-----~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-----PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-----chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34566677888999999999998876543 12111 113455899999999999999999999999987743
No 66
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=66.75 E-value=24 Score=28.17 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+..+...+-..+++.+...|++.+|.+.+.. +.+|.+ -=+.|..-++.|...|++..|-.+.++....+.
T Consensus 57 l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~--------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 57 LRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY--------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT---------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4455556667788889999999999988765 223332 234888899999999999999999999988775
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=66.44 E-value=71 Score=26.13 Aligned_cols=86 Identities=10% Similarity=-0.065 Sum_probs=60.1
Q ss_pred HHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhh
Q 025373 112 WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR 191 (254)
Q Consensus 112 ~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~r 191 (254)
+..+...|..|- +..+.+-+...|..++.+++..+++..|..+.+++-.+..+.. ....-+..++.++...+
T Consensus 15 ~~~~~~~l~~~~-----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 15 FTIVADILLRIL-----PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccchhhhhHhc-----cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcC
Confidence 445555554441 1234456899999999999999999999999999987754321 11223456788888899
Q ss_pred hHHHHHHHHHHHHh
Q 025373 192 KFLEAALRYYDISQ 205 (254)
Q Consensus 192 kFLeAa~rY~els~ 205 (254)
+|-+|-..|.....
T Consensus 87 ~~~eA~~~~~~Al~ 100 (168)
T CHL00033 87 EHTKALEYYFQALE 100 (168)
T ss_pred CHHHHHHHHHHHHH
Confidence 99877776665554
No 68
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=66.11 E-value=6.7 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHhcc
Q 025373 98 IREKLADLYESEQQWSKAAQMLSG 121 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~ 121 (254)
....||..|+..|++.+|.+++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999999876
No 69
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.06 E-value=1.6e+02 Score=29.97 Aligned_cols=131 Identities=17% Similarity=0.123 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhc-CcccchHHHHHHHHHHHHHHH-HhhccHHHHHHHhccCCCCCCCccCC-hHHHHHHHHHHHHHhhc
Q 025373 73 QKEIANYTLAQIQ-PRVVSFEEQVLIIREKLADLY-ESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLE 149 (254)
Q Consensus 73 ~~~v~~~~L~~i~-~~~is~Eeq~a~lr~~LA~i~-E~~~d~~~AA~vL~~I~lEt~~~~~s-~~~K~~~~l~i~rL~Le 149 (254)
.+..|..+|+.+- ..+.+- ++.+++|..||.++ +.-+|+.+|-..|..--.=..+..+. -.+.+++.+ +++|-.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p-~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll--~~i~~~ 112 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSP-RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL--ARIYFK 112 (608)
T ss_pred HHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH--HHHHHh
Confidence 3677788888886 666655 67799999999999 46678999988887421111112222 245556655 888888
Q ss_pred ccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 150 ~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
.+-.. |-.++++.-..............|+.+-+.+.-..+++--|..-+..++...
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 77766 9999999877665544445556666664544433378888999998888863
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=66.04 E-value=1.2e+02 Score=28.77 Aligned_cols=60 Identities=18% Similarity=-0.032 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
.+..+-.+|+|+..++|..|+.|..++-..-++ +++ +..+++++....+--+|++.|.+=
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~--~~~-----~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD--AYD-----YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HHH-----HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347778899999999999999999998876433 222 346899999999988888888764
No 71
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.57 E-value=40 Score=22.93 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=41.1
Q ss_pred hhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 147 YLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 147 ~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.++.||+..|..+++++....++ +.+.. ..+|+++-...+|-+|-..+..+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~--~~~~~----~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD--NPEAR----LLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT--SHHHH----HHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHCCC--CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36789999999999999877654 34433 35777778889999998888888775
No 72
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.28 E-value=11 Score=22.15 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 139 KCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 139 ~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
-+.+++++|...||+.+|..+.+++...+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4678999999999999999999988766543
No 73
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=64.06 E-value=9 Score=39.36 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=44.5
Q ss_pred HHHHHhhcccchhhHHHHHhhhhhhcccCc------c----hhHHHHHHHHHHHHHhhhhhHHHHHHH
Q 025373 142 QIARLYLEDDDAVNAEAFINKASFLVSSSQ------Q----EVLNLQYKVCYARILDLKRKFLEAALR 199 (254)
Q Consensus 142 ~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~------d----~~LkL~yk~~~ari~d~~rkFLeAa~r 199 (254)
++|...|=-|....||+.+-++......+. + -+|-++||...-|++.+|+|||+++.+
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~v~~Vl~yR~KyLk~~g~ 716 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKELVPRVLQYRRKYLKALGR 716 (737)
T ss_pred HHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 345556667777888888887776554321 1 288899999999999999999999975
No 74
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.49 E-value=89 Score=29.57 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......+|.+|...|++.+|...+... .++.. -...|.+.+.+|+..|++..|..++.++..+-. +++.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P--~~~~ 105 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPS--------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAP--GDSR 105 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHH
Confidence 456788999999999999999887653 33221 234688889999999999999999999987654 4566
Q ss_pred HHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILD 188 (254)
Q Consensus 175 LkL~yk~~~ari~d 188 (254)
+...-..|..++..
T Consensus 106 ~~~~l~~~~~kl~~ 119 (356)
T PLN03088 106 FTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666643
No 75
>PRK12798 chemotaxis protein; Reviewed
Probab=62.49 E-value=37 Score=33.68 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=63.1
Q ss_pred cCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhh
Q 025373 130 VIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKR 209 (254)
Q Consensus 130 ~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~ 209 (254)
.|+++.+.++|++|+|--+..|...-|---.+|+..+....+-+.-..++|.-.++|..-. +-++ ..+|+.++.
T Consensus 250 ~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~--~~~a---l~~L~~I~~- 323 (421)
T PRK12798 250 FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDD--AESA---LEELSQIDR- 323 (421)
T ss_pred hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCccc--HHHH---HHHHhcCCh-
Confidence 4788889999999999999999999999999999999866555566788888888887653 3333 456666432
Q ss_pred hcCCCCCCHHHH
Q 025373 210 QIGDETIDEEAL 221 (254)
Q Consensus 210 ~~~~~~ide~er 221 (254)
....+.||
T Consensus 324 ----~~L~~~Dr 331 (421)
T PRK12798 324 ----DKLSERDR 331 (421)
T ss_pred ----hhCChhhH
Confidence 44555555
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=61.73 E-value=1.5e+02 Score=28.23 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.+...|+.++-..|+|.+|-+.|.. .-++.. + .-+.+..-++++.+.||...|..+.+++-...
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~----p---~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ----L---DANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4555666666666666666666652 111111 1 11234455666666666666666666664443
No 77
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=61.67 E-value=15 Score=33.60 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------hcCcccchHHHHHHHHHHHHH-HH--Hh
Q 025373 38 KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQ------IQPRVVSFEEQVLIIREKLAD-LY--ES 108 (254)
Q Consensus 38 ~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~------i~~~~is~Eeq~a~lr~~LA~-i~--E~ 108 (254)
-.+...++.+..+--.-+++++.|++.|.++|++.+-.++.. -.. .++... -++|..+++..|.+ .. ..
T Consensus 130 ~~~A~kiL~~~~d~~~~~~lid~~i~~l~~l~~~~r~~l~~~-~~~~~~~~i~ta~~l-~~~~~~~~~~~l~~~~~~~~~ 207 (250)
T PRK14474 130 VKIIRAALADLANATLEQQIVGIFIARLEHLSEAERQALANS-NTTPEMLRIRTSFEL-SQDLRAQILESLHQTHLIPGT 207 (250)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhcccCHHHHHHHHhh-hcCCCCeEEEeCCCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 344555666666666678999999999999999988888654 211 122222 57899999999999 55 33
Q ss_pred hccHHHHHHHhccCCCCCCCccC
Q 025373 109 EQQWSKAAQMLSGIDLDSGMRVI 131 (254)
Q Consensus 109 ~~d~~~AA~vL~~I~lEt~~~~~ 131 (254)
.=.|..--+.++||-|.+++..+
T Consensus 208 ~~~f~~~p~li~Giel~~~~~~i 230 (250)
T PRK14474 208 DIHFVTSPELICGIELKTEGYKI 230 (250)
T ss_pred ceeeecCcccccCeEEecCCceE
Confidence 33678888999999999986543
No 78
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=61.45 E-value=23 Score=31.42 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
....++...|+|.++.++|..+. +.. .+ ..-..+|..-+++|...|++..|...++|+-.+.++
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~-~~~--~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLE-ELP--AA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHH-H-T-------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-hcc--CC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 46678899999999999999865 111 12 244678999999999999999999999999888764
No 79
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.42 E-value=1.5e+02 Score=28.11 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH--------------------HHHHHHHHHHHHhhhhhHH
Q 025373 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL--------------------NLQYKVCYARILDLKRKFL 194 (254)
Q Consensus 135 ~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L--------------------kL~yk~~~ari~d~~rkFL 194 (254)
|=+.+|-+-..+|+|.|-+..|-.-+-||...+.++ +|+. -.-++--..|++-.-++|.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 445677777777777777777777777777666443 2222 2233445678888889999
Q ss_pred HHHHHHHHHHh
Q 025373 195 EAALRYYDISQ 205 (254)
Q Consensus 195 eAa~rY~els~ 205 (254)
||+.-+.....
T Consensus 168 Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 168 EAATAFLKEGV 178 (308)
T ss_pred HHHHHHHHhhh
Confidence 99887766544
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=61.04 E-value=1.9e+02 Score=29.28 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=56.2
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc-C-cchhHH-
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-S-QQEVLN- 176 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~-~-~d~~Lk- 176 (254)
-.-|+|+...|++.+|++.+.. .|.++...+- +--+.+..+|..|+...|+.-+..-..--.+ . +-.+.+
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~------Ar~LD~~DRy-iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc 304 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDE------ARELDLADRY-INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQC 304 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH------HHhCChhhHH-HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHH
Confidence 3447777777888888877766 3444333221 5566777778888877777655433221100 0 011222
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+-|..=.|+=+-.+.++=.|=++|+.|..
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444455555556667777777777754
No 81
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=61.03 E-value=10 Score=23.77 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 140 CVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 140 ~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
|..++++|...|||.+|..+..++-.+-
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6788999999999999999999976443
No 82
>PLN03218 maturation of RBCL 1; Provisional
Probab=60.85 E-value=2.7e+02 Score=30.86 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhh
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKa 163 (254)
..|-..|.+.|++.+|-+++.++.-+.. +-.++ ...|--.+..|...+++..|....++.
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~-gi~PD---~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETH-PIDPD---HITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcC-CCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455556666666666666666533221 11111 124444555555555555555555544
No 83
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=60.55 E-value=72 Score=29.37 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCcch----HhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHHhh
Q 025373 35 VQAKKFIDHMLSDDVPL----VVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVV-SFEEQVLIIREKLADLYESE 109 (254)
Q Consensus 35 ~~l~~~i~~~~~~~v~l----v~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~i-s~Eeq~a~lr~~LA~i~E~~ 109 (254)
..|..++.++++++.+. ......|...++-++..| ...+|.-.++|++-.+-- .+-.-.-.=+..+.+..+ .
T Consensus 116 ~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~--~~l~Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~-~ 192 (258)
T PF07064_consen 116 HALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFP--EYLEIVVNCARKTEVRYWPYLFDYLGSPRDLFEECLE-N 192 (258)
T ss_pred HHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCc--chHHHHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHH-c
Confidence 57788888888887765 677888888888888754 345666667776542221 111112233444555544 7
Q ss_pred ccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhh
Q 025373 110 QQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (254)
Q Consensus 110 ~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKa 163 (254)
|+...||..|-=++ .|+. -.+.+++-.+..+++.+..++.+||.-+.-.++=.
T Consensus 193 ~~l~tAa~yLlVl~~~e~~-~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL 246 (258)
T PF07064_consen 193 GNLKTAASYLLVLQNLEGS-SVVKDEESRQCALRLLVMALESGDWDLCFELVRFL 246 (258)
T ss_pred CcHHHHHHHHHHHHhcCCc-chhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 89999999887665 4433 23346778889999999999999999888766533
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=59.13 E-value=1.1e+02 Score=25.97 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcc--------cchhhHHHHHhhhhhhcc
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLED--------DDAVNAEAFINKASFLVS 168 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~--------~D~~~Ae~~~nKas~~~~ 168 (254)
.+..++.+|...|+|.+|...+..+- ..... ... ...+......|.+. +++..|..+.+++.....
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~----~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH-PDA----DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-Cch----HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 45778999999999999999998752 22221 111 12344455555543 889999999999987766
Q ss_pred cCcch-hHHH----------HHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 169 SSQQE-VLNL----------QYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 169 ~~~d~-~LkL----------~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+.... .... .+....|.++-.+++|-+|-..|.+....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 53221 1111 12235677777788899999988888764
No 85
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=59.09 E-value=28 Score=27.68 Aligned_cols=110 Identities=12% Similarity=0.168 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Q 025373 22 KHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREK 101 (254)
Q Consensus 22 ~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~ 101 (254)
..++..+...+....+..|+++++..+ + ....+-+.++....+.++....+.- -. +.....+ ..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~--~~~~~~~~li~ly~~~~~~~ll~~l---~~--~~~~yd~--------~~ 74 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-S--ENPALQTKLIELYAKYDPQKEIERL---DN--KSNHYDI--------EK 74 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-c--cchhHHHHHHHHHHHHCHHHHHHHH---Hh--ccccCCH--------HH
Confidence 345556655556788999999988665 2 3445555555554433322221111 10 1111112 22
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcc-cchhhHHHHHhh
Q 025373 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINK 162 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~-~D~~~Ae~~~nK 162 (254)
..+++++.|-|.+|.-++.. ...|-+.+.++++. +|+..|-.|+.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k---------------~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK---------------DGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh---------------hcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 44555555566655555532 22444555556665 666666666665
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=57.49 E-value=1e+02 Score=24.99 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=68.0
Q ss_pred HHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
.++.++...|++.+|...+.. +.++. ...+.|..-+..+...|++..|....+++..+-.+ +.+ .
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--~~~----a 94 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQP--------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--HPE----P 94 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcH----H
Confidence 468888999999999888765 22222 23578999999999999999999999999986543 332 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+...+..+-..+++=+|...|...-..
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333455555678888888888876553
No 87
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.49 E-value=23 Score=35.99 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCCh-HHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~-~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
..=-.||++||.-+|..+||+.... |.+...-|..++ -.|..+| -++.+...+|+..|+.|.+++..-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 3346799999999999999986532 222121234444 5688888 577899999999999999998876
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=57.20 E-value=1.5e+02 Score=26.91 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
+.+..-..++.+|...|++.+|...+.. +.++.. -...|...+..|...||+..|....+++..+-
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4444555556666666666666544332 111111 13456666666666666666666666665543
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=57.19 E-value=1.1e+02 Score=29.04 Aligned_cols=91 Identities=16% Similarity=0.046 Sum_probs=67.2
Q ss_pred HHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHH
Q 025373 102 LADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk 180 (254)
.|...-.+|+|.+|.+.+.. |.++.. -...|...+..|+..+++..|..++.++-.+-.. +. ..+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~----~a~ 73 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPS--LA----KAY 73 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CH----HHH
Confidence 35666778899999987754 223322 2468899999999999999999999999777543 22 223
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+.++-..++|=+|...|...-..
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45577777889998888888777664
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.76 E-value=2.3e+02 Score=29.30 Aligned_cols=149 Identities=23% Similarity=0.279 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHH
Q 025373 36 QAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSK 114 (254)
Q Consensus 36 ~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l-~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~ 114 (254)
.|..-++.++.-..-+.-+-+||-.+.+....| ++.+.+++.-.+...|- -.-.+--.||++|.++||-++
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip--------~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP--------NDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--------CCHHHHHHHHHHhhcccchhh
Confidence 333344444433334555667777777666666 34455665544433332 223445679999999999999
Q ss_pred HHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHH
Q 025373 115 AAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFL 194 (254)
Q Consensus 115 AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFL 194 (254)
|-+. ..||| |-++- -++++--.+-.|++..=|..|-.|..|++.+++....+.+ .--.|+-| ...|-
T Consensus 611 afq~----~ydsy-ryfp~--nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql--miasc~rr----sgnyq 677 (840)
T KOG2003|consen 611 AFQC----HYDSY-RYFPC--NIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL--MIASCFRR----SGNYQ 677 (840)
T ss_pred hhhh----hhhcc-cccCc--chHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH--HHHHHHHh----cccHH
Confidence 9875 56677 43332 3555556678899999999999999999999987554443 33345444 34444
Q ss_pred HHHHHHHHHHh
Q 025373 195 EAALRYYDISQ 205 (254)
Q Consensus 195 eAa~rY~els~ 205 (254)
.|---|..+..
T Consensus 678 ka~d~yk~~hr 688 (840)
T KOG2003|consen 678 KAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHH
Confidence 44445555544
No 91
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=56.59 E-value=19 Score=23.39 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
+.|+.-++.|.+.|++.+|+..++|+-....+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46888999999999999999999999887653
No 92
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=55.90 E-value=2.1e+02 Score=28.08 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=89.9
Q ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHH
Q 025373 80 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAF 159 (254)
Q Consensus 80 ~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~ 159 (254)
-++.++..+-+||-+. .|-..|-..|+...|-++=|.+- ++. .++.+.|+-...+-++-|+..|=+.+||..
T Consensus 58 F~e~l~~d~~t~e~~l-----tLGnLfRsRGEvDRAIRiHQ~L~-~sp--dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 58 FLEMLQEDPETFEAHL-----TLGNLFRSRGEVDRAIRIHQTLL-ESP--DLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred HHHHHhcCchhhHHHH-----HHHHHHHhcchHHHHHHHHHHHh-cCC--CCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3455567777888775 48999999999999999988852 332 689999999999999999999999999988
Q ss_pred Hhhhhhh--cccCcchhHHHHHHHH--------HHH-H--HhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHH
Q 025373 160 INKASFL--VSSSQQEVLNLQYKVC--------YAR-I--LDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALS 226 (254)
Q Consensus 160 ~nKas~~--~~~~~d~~LkL~yk~~--------~ar-i--~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~ 226 (254)
.+-.... +.+..-+.|-.-|..- .|+ + ++-...=.+.||-|-|+..... ..-|-+.-+..|+
T Consensus 130 f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-----~~~~~d~A~~~l~ 204 (389)
T COG2956 130 FNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-----ASSDVDRARELLK 204 (389)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-----hhhhHHHHHHHHH
Confidence 7643221 0111112333333321 111 1 2223344678888999987532 2334444467777
Q ss_pred HHH
Q 025373 227 AAV 229 (254)
Q Consensus 227 ~Av 229 (254)
+|.
T Consensus 205 kAl 207 (389)
T COG2956 205 KAL 207 (389)
T ss_pred HHH
Confidence 754
No 93
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=55.44 E-value=16 Score=21.38 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLS 120 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~ 120 (254)
..+..||.++-..|++.+|..+|.
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356789999999999999998874
No 94
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=50.87 E-value=79 Score=21.72 Aligned_cols=28 Identities=18% Similarity=-0.009 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
..|..-+.+|...|++..|-..++++-.
T Consensus 30 ~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 30 ELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444444555555555555555555443
No 95
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.71 E-value=3e+02 Score=30.43 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHH------------------HHHHHhcCCChHHHHHHHHH
Q 025373 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQ------------------TFAQELGRLEPETQKEIANY 79 (254)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~------------------~~~~~l~~l~~~~~~~v~~~ 79 (254)
...|.-++--....++...-..++.+.++.+-.--..|.++. .+-+.+..=+.=..+.+|++
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Q ss_pred HHHhhcCcccchHHHHHHHHHHHHH--------------------HHHhhccHHHHHHHhccCCCCCC---CccCChHHH
Q 025373 80 TLAQIQPRVVSFEEQVLIIREKLAD--------------------LYESEQQWSKAAQMLSGIDLDSG---MRVIDDTFR 136 (254)
Q Consensus 80 ~L~~i~~~~is~Eeq~a~lr~~LA~--------------------i~E~~~d~~~AA~vL~~I~lEt~---~~~~s~~~K 136 (254)
.++.+...+=-=|.+.-...+.|+- ++...|+|.+|-+|+..+.=.+. .
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d-------- 681 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED-------- 681 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--------
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHH
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeA 196 (254)
+||.++-.|+|.+.|..|=--..+....+...++.++ -.|.||.+..+.++=++
T Consensus 682 --v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v----l~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 682 --VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV----LHYLARAWYEAGKLQEA 735 (1018)
T ss_pred --eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHhhhHHHH
No 96
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=50.19 E-value=1.8e+02 Score=25.66 Aligned_cols=94 Identities=21% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.++..|+.++-..|+..+|-.+|....-... + --.+|...+..|+.-|++..|-.+++|+..... +|+...
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~----~---~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p--~d~~~~ 251 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAP----D---DPDLWDALAAAYLQLGRYEEALEYLEKALKLNP--DDPLWL 251 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H----T---SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST--T-HHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCc----C---HHHHHHHHHHHhccccccccccccccccccccc--cccccc
Confidence 3445555556556666555544443211110 0 001455556666666677777777766554332 333333
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
+ .+|-++....++=+|-+-|+.+
T Consensus 252 ~----~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 252 L----AYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp H----HHHHHHT---------------
T ss_pred c----cccccccccccccccccccccc
Confidence 3 3455555555555554444443
No 97
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=49.96 E-value=1.6e+02 Score=29.08 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCcchHhHHHHHHHHHHH---hcCCChHHH----HHHHHHHHHhhcCcccchHH---HHHHHHHHHH
Q 025373 34 IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQE---LGRLEPETQ----KEIANYTLAQIQPRVVSFEE---QVLIIREKLA 103 (254)
Q Consensus 34 ~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~---l~~l~~~~~----~~v~~~~L~~i~~~~is~Ee---q~a~lr~~LA 103 (254)
+++|..-+..|-.+.+.+|...+=.. |-.. .+.+||.+. +++-.+-+..--... ++.+ ..|...+.=.
T Consensus 138 i~Gle~al~~M~~GE~a~v~i~~~Ya-yG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~-~~~~e~l~~A~~~ke~G 215 (397)
T KOG0543|consen 138 IEGLEIALRMMKVGEVALVTIDPKYA-YGEEGGEPPLIPPNATLLYEVELLDFELKEDESWK-MFAEERLEAADRKKERG 215 (397)
T ss_pred hHHHHHHHHhcCccceEEEEeCcccc-cCCCCCCCCCCCCCceEEEEEEEEeeecCcccccc-cchHHHHHHHHHHHHhh
Confidence 37777777777777777776654211 1112 223454432 111111100001111 1222 2233344456
Q ss_pred HHHHhhccHHHHHHH----hccCCCCCCCccCChHH-------HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 104 DLYESEQQWSKAAQM----LSGIDLDSGMRVIDDTF-------RLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 104 ~i~E~~~d~~~AA~v----L~~I~lEt~~~~~s~~~-------K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
..|-++|+|..|+.. +.-|+-+.+. +++| |+..++.++..||.-++|..|--++||+-.+-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~---~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSF---DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccC---CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 677788999988876 6666655542 3333 888999999999999999999999999866543
No 98
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=49.69 E-value=3.1e+02 Score=28.20 Aligned_cols=98 Identities=16% Similarity=-0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
......|+.++...|++.+|...+...- +.. ++ -...+...++.|...|++..|.....++...-.+ +
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~-----P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~--~--- 351 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSL-ATH-----PD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV--T--- 351 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-----CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--c---
Confidence 4566677888888888888877766521 111 11 1234555677788888888888887777654332 1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+....+..+....++-+|-..|......
T Consensus 352 -~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 -SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 123333455666677777777777766554
No 99
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=49.04 E-value=1e+02 Score=29.33 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=60.1
Q ss_pred HHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHH
Q 025373 103 ADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVC 182 (254)
Q Consensus 103 A~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~ 182 (254)
+-+.-.+|||..|-+.+...+ ..++ ...-.|+-.++.+.+.||+..|..|++++.....+. .+.....
T Consensus 91 glla~~~g~~~~A~~~l~~~~------~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-----~l~~~~~ 158 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNA------DHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-----NILVEIA 158 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHh------hcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----chHHHHH
Confidence 444567889999998886521 1111 234567778888888899999999998876444321 2233445
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 183 YARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 183 ~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+++++-..++|=+|-..+.++...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~ 182 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM 182 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 577777777776666666665554
No 100
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=48.59 E-value=27 Score=18.43 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
..|..++.+|.+.+++..|..+..++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46778888999999999999988877544
No 101
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=47.81 E-value=3.2e+02 Score=27.81 Aligned_cols=141 Identities=16% Similarity=0.078 Sum_probs=94.0
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhc-------cCCCCCCCccC
Q 025373 60 TFAQELGRLE-PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS-------GIDLDSGMRVI 131 (254)
Q Consensus 60 ~~~~~l~~l~-~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~-------~I~lEt~~~~~ 131 (254)
.|...+..+. .+..+.+-+.+|.........--+.++..=..||..|-..|++.+|..... .+...+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~----- 320 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS----- 320 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-----
Confidence 4444444442 444566666666655444444456788888899999999999998875543 211111
Q ss_pred ChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC--cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 132 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS--QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 132 s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~--~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
. .+=...+..++-+|=-.+++..|..|..|+..++.+. .+....-.+|.-+++.+-+-++|-||=.-|.+.-..
T Consensus 321 ~-~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 321 H-PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred h-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1 2223345666667777889999999999998888642 233345788888999999999988887666665443
No 102
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.77 E-value=58 Score=29.83 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cch
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~ 173 (254)
.......++-++. +|+|.+|...+..+-=.-.... +.-..+..++.+|+..+|+..|-.+..++-..+++. ..+
T Consensus 143 ~~~Y~~A~~l~~~-~~~y~~Ai~af~~fl~~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 143 NTDYNAAIALVQD-KSRQDDAIVAFQNFVKKYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 3334444433333 4788888877766543332212 223355677888888888888888888887777652 233
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+. .|+ ++.++....++-+|...|.++-.
T Consensus 218 dA--l~k--lg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 218 DA--MFK--VGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HH--HHH--HHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 222 35555566777777777776654
No 103
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.97 E-value=16 Score=24.87 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCC
Q 025373 99 REKLADLYESEQQWSKAAQMLSGID 123 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~ 123 (254)
+..||.+|-.-||...|-++|.++-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH
Confidence 4579999999999999999999987
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=46.08 E-value=1.3e+02 Score=32.88 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 90 s~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
.+..--...+.+|..++-.+|++.+|.+++.. .++... ..+++|.--+-+|+..+.+..|-.. ++-.++..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~-~l~~~P------~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEE-HLKEHK------KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCC------cceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 34455566788999999999999999999883 444433 3455666666699999997777666 66666666
Q ss_pred CcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 170 ~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..++.+.-.|+.|+..+.+.+.-.---|-+|-.+-.
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~ 131 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNE 131 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCC
Confidence 677899999999999999998655555555544433
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=45.91 E-value=1.3e+02 Score=24.84 Aligned_cols=71 Identities=10% Similarity=-0.088 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 133 DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 133 ~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+..+...|..-+..|+..+|+..|..+.+++..+..+..+ ....+.-++.++....+|-+|...|.+....
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467778999999999999999999999999766433221 2345677788888889998888877766553
No 106
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.67 E-value=1.2e+02 Score=29.87 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
.--..++++.|-.-|-+++|-+-|+. +++...-.+.|+=..+-|-.-|.+++|-..+.-.-..++.
T Consensus 223 wwWk~Q~gkCylrLgm~r~Aekqlqs--------sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~------ 288 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQS--------SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF------ 288 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHH--------HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc------
Confidence 44567899999999999999999986 3444455667777778888889999988777666555543
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+.|..=||||...=..+-+|.+-|.++-..
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 5789999999999999999999999998764
No 107
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.76 E-value=1.9e+02 Score=26.51 Aligned_cols=62 Identities=15% Similarity=0.032 Sum_probs=29.6
Q ss_pred HHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 140 CVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 140 ~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
|-....|++..+|+..|-..+++.-...++..... ..+| ..+..+-..++|-+|...|..+-
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~-~A~y--~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQP-NANY--WLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchH-HHHH--HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444455555666666666665555554432111 1222 33444444555555555555543
No 108
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=42.30 E-value=3.5e+02 Score=26.73 Aligned_cols=200 Identities=13% Similarity=0.210 Sum_probs=117.3
Q ss_pred HhhcCCCHHHHHHHHHHH--hcCCcchHhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Q 025373 27 SVISSNDIVQAKKFIDHM--LSDDVPLVVSRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQPRVVSFEEQVLIIREKL 102 (254)
Q Consensus 27 ~i~~~~~~~~l~~~i~~~--~~~~v~lv~sR~~l~~~~~~l~~l~~--~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~L 102 (254)
.+...++..+|..+|.++ +=++++=-=+-.++-+++..+..+|+ +..++++..+++--+..+=.|-.| .|.-.|
T Consensus 57 ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq--~Learl 134 (411)
T KOG1463|consen 57 LLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQ--SLEARL 134 (411)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHH--HHHHHH
Confidence 334455667777777775 23555555555667777777777753 447888888877655443333333 233346
Q ss_pred HHHHHhhccHHHHHHHhccCCCCCCCccCChHH-HHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc-CcchhHHHHHH
Q 025373 103 ADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTF-RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVLNLQYK 180 (254)
Q Consensus 103 A~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~-K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~-~~d~~LkL~yk 180 (254)
+..|-..++|.+|-...+.+-=|- +.|+|.. =+++++.--..|-+-...-.|.+-+--|...-.. --.|.++-.--
T Consensus 135 i~Ly~d~~~YteAlaL~~~L~rEl--KKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 135 IRLYNDTKRYTEALALINDLLREL--KKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH--HhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 888999999999977665543332 2444443 3344554444454444444444333322221111 01234444433
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCH-HHHHHHHHHHHHHHhcCC
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDE-EALEQALSAAVTCTILAA 236 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide-~er~~~L~~Av~caILAp 236 (254)
..-.-+.-..|+|=-|...|||=+.- ...+|. .+-...|+--+.|=|...
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg------f~s~~~~v~A~~sLKYMlLcKIMln 263 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG------FDSLDDDVKALTSLKYMLLCKIMLN 263 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc------ccccCCcHHHHHHHHHHHHHHHHhc
Confidence 44444455568898999999998772 456654 577889999999988754
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=42.12 E-value=2.3e+02 Score=24.45 Aligned_cols=64 Identities=16% Similarity=0.041 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHH-hhhhh--HHHHHHHHHHHHhh
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARIL-DLKRK--FLEAALRYYDISQI 206 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~-d~~rk--FLeAa~rY~els~~ 206 (254)
.+.|...+++|+..+|+..|...++|+-.+-.+ +.++. ..+|.++ ....+ +-+|-+-|.+.-..
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--~~~~~----~~lA~aL~~~~g~~~~~~A~~~l~~al~~ 139 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--NAELY----AALATVLYYQAGQHMTPQTREMIDKALAL 139 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 558999999999999999999999999888764 33433 3344432 23233 45666666665553
No 110
>PLN03218 maturation of RBCL 1; Provisional
Probab=41.70 E-value=5.3e+02 Score=28.62 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=10.6
Q ss_pred HHHHHHhhccHHHHHHHhccC
Q 025373 102 LADLYESEQQWSKAAQMLSGI 122 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I 122 (254)
|-..|.+.|++.+|-+++..+
T Consensus 620 LI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 444445555555555555444
No 111
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.23 E-value=2e+02 Score=29.66 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=66.0
Q ss_pred HHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc---chhHHHHHHH
Q 025373 105 LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ---QEVLNLQYKV 181 (254)
Q Consensus 105 i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~---d~~LkL~yk~ 181 (254)
-|-..+++.+|.++|..++.+|++ +.=..--..|+.-.|...=....|..+-.+-.-++... .+.+.+.|..
T Consensus 417 ~yl~~~qi~eAi~lL~smnW~~~g-----~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 417 QYLRCDQIEEAINLLLSMNWNTMG-----EQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHhcCCHHHHHHHHHhCCccccH-----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 577889999999999999999985 33344445666444444436677888888766665322 3467888887
Q ss_pred HHHHHHhhhhhHHHHHHHHHHH
Q 025373 182 CYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 182 ~~ari~d~~rkFLeAa~rY~el 203 (254)
.|.|.-|+|...=.||.-.
T Consensus 492 ---~V~~~aRRfFhhLLR~~rf 510 (545)
T PF11768_consen 492 ---PVSDLARRFFHHLLRYQRF 510 (545)
T ss_pred ---HHHHHHHHHHHHHHHhhHH
Confidence 7888889998888887644
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=39.63 E-value=60 Score=37.08 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.+-..|++||+.-|.+.+|.++|..+= .-+ .++.++|++-+...|..++...|...++||-...+..+.-++.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~-KKF------~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLML-KKF------GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHH-HHh------cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 355789999999999999999998631 111 1468899999999999999999999999998877654333443
Q ss_pred HHHHHHHHHHHhhhh
Q 025373 177 LQYKVCYARILDLKR 191 (254)
Q Consensus 177 L~yk~~~ari~d~~r 191 (254)
=+|-.++=..-|..|
T Consensus 1604 skfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAER 1618 (1710)
T ss_pred HHHHHHHhhcCCchh
Confidence 334333333444444
No 113
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=38.34 E-value=48 Score=20.06 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG 121 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~ 121 (254)
+.....||.+|-..|+|.+|.+.+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHH
Confidence 34557899999999999999988764
No 114
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=38.09 E-value=4.3e+02 Score=26.51 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHH-HHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRL-SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~-~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
..+...++.++...|+|.+|.+.+.. +.++..... ....+ ..+-+-.-+|-..+++..|..+++++-.+-.+ +.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~--~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~--~~ 542 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP--MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE--CD 542 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc--ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cH
Confidence 34456689999999999999887765 555443111 11122 22223333444469999999999998766432 21
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..+..+++++....+|=+|-..|...-.
T Consensus 543 ----~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 543 ----IAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2456779999999998777776665544
No 115
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.74 E-value=3.6e+02 Score=25.47 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=78.8
Q ss_pred HHHHHhhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cchhHHHH
Q 025373 103 ADLYESEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQ 178 (254)
Q Consensus 103 A~i~E~~~d~~~AA~vL~~---I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~~LkL~ 178 (254)
|+.--.-|++.+|-++-.. -.+++.--.++.. ..+++-.-++|-..|.+.|..-+-|--.+.+.- +..+.|+-
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K---dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK---DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH---HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHH
Confidence 4444444666666666332 2333321112221 245566666777899999998888887777664 34577776
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCC
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAA 236 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caILAp 236 (254)
=.++-|-=-.--.+|.|.++.|-.||-. +.|..++-.=|.+.|-..
T Consensus 238 k~L~~aieE~d~e~fte~vkefDsisrL------------D~W~ttiLlkiK~siq~~ 283 (288)
T KOG1586|consen 238 KDLLDAIEEQDIEKFTEVVKEFDSISRL------------DQWKTTILLKIKKSIQGD 283 (288)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhccchH------------HHHHHHHHHHHHHHHhcc
Confidence 5555555455567899999999999987 789998888888888644
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=37.45 E-value=1.5e+02 Score=29.03 Aligned_cols=83 Identities=19% Similarity=0.039 Sum_probs=52.9
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk 180 (254)
.||+++-..++..+|.++|..-=-+..+ + .++...+++.||..+++..|....+|+..+.++. ...-
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~---d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~------f~~W 271 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQ---D----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE------FETW 271 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh------HHHH
Confidence 3777777777777888777663322221 1 6788888888888888888888888888777652 2223
Q ss_pred HHHHHHHhhhhhHHHH
Q 025373 181 VCYARILDLKRKFLEA 196 (254)
Q Consensus 181 ~~~ari~d~~rkFLeA 196 (254)
...|+++-...+|=+|
T Consensus 272 ~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 272 YQLAECYIQLGDFENA 287 (395)
T ss_pred HHHHHHHHhcCCHHHH
Confidence 3344444444444444
No 117
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=35.64 E-value=95 Score=29.14 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=57.9
Q ss_pred chHHHHHHHHHH-------HHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHh
Q 025373 90 SFEEQVLIIREK-------LADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFIN 161 (254)
Q Consensus 90 s~Eeq~a~lr~~-------LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~n 161 (254)
++++|+-.+++. |++.+...|+++.+-..|.. |+.|.+- | ..|.+.|+.|+..|+...|...++
T Consensus 140 WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~------E--~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 140 WVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD------E--PAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc------h--HHHHHHHHHHHHcCCchHHHHHHH
Confidence 577788888777 77777788888888777765 5666663 2 389999999999999999999999
Q ss_pred hhhhhccc
Q 025373 162 KASFLVSS 169 (254)
Q Consensus 162 Kas~~~~~ 169 (254)
+.+.+..+
T Consensus 212 ~l~~~~~e 219 (280)
T COG3629 212 QLKKTLAE 219 (280)
T ss_pred HHHHHhhh
Confidence 99997543
No 118
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=35.05 E-value=2.5e+02 Score=27.82 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHH
Q 025373 58 LQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRL 137 (254)
Q Consensus 58 l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~ 137 (254)
|-.++..++..+++..+..+++-+...-++. -|=..|-..|-+++.|.+|...|-. +++..--.
T Consensus 298 L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--------~L~~tLG~L~~k~~~w~kA~~~lea--------Al~~~~s~ 361 (400)
T COG3071 298 LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--------LLLSTLGRLALKNKLWGKASEALEA--------ALKLRPSA 361 (400)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--------hHHHHHHHHHHHhhHHHHHHHHHHH--------HHhcCCCh
Confidence 5667777777788888999999999876665 4557789999999999999999972 33334445
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
.-|..-+..|.+-||+..|+.-.+.+-.....
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 57888899999999999999988888765544
No 119
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=34.33 E-value=1.4e+02 Score=21.37 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHHHhcCCcchHhHHHHHHH
Q 025373 21 YKHILSSVISSNDI--VQAKKFIDHMLSDDVPLVVSRQLLQT 60 (254)
Q Consensus 21 y~~ll~~i~~~~~~--~~l~~~i~~~~~~~v~lv~sR~~l~~ 60 (254)
++.+|+.+..+.++ +..+.+++.++++.++-+-.-.+|..
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~a 43 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMA 43 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788888887754 89999999999999875544444443
No 120
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=33.84 E-value=85 Score=34.46 Aligned_cols=151 Identities=15% Similarity=0.215 Sum_probs=97.1
Q ss_pred HHHHHHHHhhcCcc--cchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccc
Q 025373 75 EIANYTLAQIQPRV--VSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 152 (254)
Q Consensus 75 ~v~~~~L~~i~~~~--is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D 152 (254)
.|.++.-+.+||-| ..=|+++-.+=+++|+.+.++|+|..|++-.-. - ..| |+-||-.|..||
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ------A-----GdK----l~AMraLLKSGd 1186 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ------A-----GDK----LSAMRALLKSGD 1186 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh------h-----hhH----HHHHHHHHhcCC
Confidence 44556667788887 466778899999999999999999999875432 1 133 456788888877
Q ss_pred hh----------hHHHHHhhhhhhccc--CcchhH-H--HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCC
Q 025373 153 AV----------NAEAFINKASFLVSS--SQQEVL-N--LQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETID 217 (254)
Q Consensus 153 ~~----------~Ae~~~nKas~~~~~--~~d~~L-k--L~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~id 217 (254)
.. +=|+|+--|+-++.. -+||+. | ..||. -.+-+|+=..|-++|--- ||-.. -+
T Consensus 1187 t~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYT-Kgqafd~LanFY~~cAqi-Eiee~---------q~ 1255 (1416)
T KOG3617|consen 1187 TQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYT-KGQAFDHLANFYKSCAQI-EIEEL---------QT 1255 (1416)
T ss_pred cceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhh-cchhHHHHHHHHHHHHHh-hHHHH---------hh
Confidence 43 456777766666642 133322 1 23332 245566666666665321 22111 13
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhc
Q 025373 218 EEALEQALSAAVTCTILAAAGPQRSRVLATLYKV 251 (254)
Q Consensus 218 e~er~~~L~~Av~caILApagp~RSrlL~~LykD 251 (254)
=++-+.+|..|-.|..=+.+-+...-.|..|..|
T Consensus 1256 ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~ 1289 (1416)
T KOG3617|consen 1256 YDKAMGALEEAAKCLLKAEQKNMSTTGLDALQED 1289 (1416)
T ss_pred hhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3566899999999999888777766666666543
No 121
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=33.54 E-value=2e+02 Score=23.98 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHH
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLE 195 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLe 195 (254)
..|+ -|+-|...++|.+|.-+++... .+ +..|-.+|++++...++-.|
T Consensus 76 d~yl-lAksyFD~kEy~RaA~~L~~~~-------s~--~~~FL~lYs~YLa~EKr~~E 123 (142)
T PF04049_consen 76 DKYL-LAKSYFDCKEYDRAAHVLKDCK-------SP--KALFLRLYSRYLAGEKRKEE 123 (142)
T ss_pred HHHH-HHHHHhchhHHHHHHHHHccCC-------Cc--hHHHHHHHHHHHHHHHHHhh
Confidence 4554 7899999999999988887544 22 45688888988887776544
No 122
>PRK11189 lipoprotein NlpI; Provisional
Probab=32.88 E-value=3.8e+02 Score=24.33 Aligned_cols=70 Identities=14% Similarity=0.001 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 131 ~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+++...+.|.....+|...|++..|....+++..+.++ +. ..+...+.++...++|=+|-..|......
T Consensus 58 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 58 LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD--MA----DAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445566778999999999999999999999998776543 22 33456777888888888888877777654
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=32.80 E-value=2.4e+02 Score=22.83 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
......++.++...|++.+|...+...-- +.+ .=.+.+...+..++..|++..|...+.++-.+..+
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALM------LDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45667899999999999999988876321 111 12457888888999999999999999999776654
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.23 E-value=56 Score=35.42 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=54.7
Q ss_pred ccchHHHHHHHH---HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhh
Q 025373 88 VVSFEEQVLIIR---EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (254)
Q Consensus 88 ~is~Eeq~a~lr---~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas 164 (254)
+.-|+-|--++- +.--.++-.++||..|-++-.. + ..+--.++|.-|+|=-+|.+|+.+||.++-|++
T Consensus 1036 psrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~-h--------~~~~l~dv~tgqar~aiee~d~~kae~fllran 1106 (1636)
T KOG3616|consen 1036 PSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA-H--------CEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN 1106 (1636)
T ss_pred cchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh-h--------ChhhhHHHHhhhhhccccccchhhhhhheeecC
Confidence 344666655543 2334677888999988877544 1 223456799999999999999999999998875
Q ss_pred hhcccCcchhHHHHHHH
Q 025373 165 FLVSSSQQEVLNLQYKV 181 (254)
Q Consensus 165 ~~~~~~~d~~LkL~yk~ 181 (254)
. |++-|+|+.
T Consensus 1107 k-------p~i~l~yf~ 1116 (1636)
T KOG3616|consen 1107 K-------PDIALNYFI 1116 (1636)
T ss_pred C-------CchHHHHHH
Confidence 3 455555553
No 125
>PF12854 PPR_1: PPR repeat
Probab=31.93 E-value=56 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccHHHHHHHhccCC
Q 025373 100 EKLADLYESEQQWSKAAQMLSGID 123 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~ 123 (254)
..|-+.|.++|++.+|-+++.+++
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCc
Confidence 356788999999999999998764
No 126
>PRK12370 invasion protein regulator; Provisional
Probab=31.30 E-value=2.5e+02 Score=28.03 Aligned_cols=66 Identities=9% Similarity=-0.100 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
......|+.++...|++.+|...+.. +.++.. -...|...+.+|+..|++..|..++.|+..+-+.
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPI--------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 44455678899999999999988754 222222 1235666788899999999999999999777654
No 127
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=30.40 E-value=5.5e+02 Score=28.27 Aligned_cols=62 Identities=13% Similarity=0.051 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
.+.|...+..+.+.|++..|+.++.++-.+-++ +. .++..++.++-...+|-+|-..|...-
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN--NS----NYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346666666777777777777777766655433 22 233444444444555555555554443
No 128
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=27.49 E-value=2.9e+02 Score=23.85 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCC
Q 025373 74 KEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG 127 (254)
Q Consensus 74 ~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~ 127 (254)
.+..-.+|+.+.|+..- +.-.-+-+|-..|+|.+|.++|.++.=++.
T Consensus 29 ~e~lL~ALrvLRP~~~e-------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 29 AEALLDALRVLRPEFPE-------LDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHhCCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 44445778888888763 334457778999999999999999755554
No 129
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.48 E-value=71 Score=25.27 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
-++-|.+=++.|+++||++.|=+-+|=+-.++
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g~l 71 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYAHGWL 71 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 67889999999999999999988777654433
No 130
>PRK14574 hmsH outer membrane protein; Provisional
Probab=27.30 E-value=8.1e+02 Score=26.41 Aligned_cols=176 Identities=12% Similarity=0.091 Sum_probs=113.6
Q ss_pred HHHHHHHHHhhcCCCH-HH-HHHHHHHHhcCCcchHhHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHhhcCccc
Q 025373 19 EQYKHILSSVISSNDI-VQ-AKKFIDHMLSDDVPLVVSRQLLQTFAQELGR-------LEPETQKEIANYTLAQIQPRVV 89 (254)
Q Consensus 19 ~~y~~ll~~i~~~~~~-~~-l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~-------l~~~~~~~v~~~~L~~i~~~~i 89 (254)
..|..+++..-..|.. .. .++-+ |.++.-..|.-..++++.... +|+-+...||..-|..-+|.+.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~-----Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARI-----DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3455555544433322 22 23333 444466666666666665443 5666778888877777776654
Q ss_pred -chHHHH-------------HHHHHHHHHHHHhhccHHHHHHHhccCCCCCC--------CccCChHHHHHHHHHHHHHh
Q 025373 90 -SFEEQV-------------LIIREKLADLYESEQQWSKAAQMLSGIDLDSG--------MRVIDDTFRLSKCVQIARLY 147 (254)
Q Consensus 90 -s~Eeq~-------------a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~--------~~~~s~~~K~~~~l~i~rL~ 147 (254)
..-.++ ...+..|.-.|-..|++.+|..+|..+-=.+. ....+-+.=.+.+.=-+..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 222221 11246788889999999999999988753222 11233333446666667888
Q ss_pred hcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 148 LEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 148 Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+-.||...||..+.+....- ..|..|.+ .+|.+...|.++-+|-+.|...-.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a--P~n~~l~~----~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA--PANQNLRI----ALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHhh
Confidence 88999999999999884443 35666655 789999999999999888855544
No 131
>PHA01735 hypothetical protein
Probab=27.12 E-value=1.3e+02 Score=22.98 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHhcCCc-chHhHHHHHHHHHHHhcCCChHHHH
Q 025373 23 HILSSVISSN-DIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGRLEPETQK 74 (254)
Q Consensus 23 ~ll~~i~~~~-~~~~l~~~i~~~~~~~v-~lv~sR~~l~~~~~~l~~l~~~~~~ 74 (254)
.++..|.+.. ...||++-++.+-+.++ ++++.-.=|+.+...++.|..+..+
T Consensus 20 El~~RiksgeATtaDL~AA~d~Lk~NdItgv~~~gspl~~La~~~P~l~~e~vq 73 (76)
T PHA01735 20 ELLSRIKSGEATTADLRAACDWLKSNDITGVAVDGSPLAKLAGLMPQLTFEDVQ 73 (76)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHCCCceeeCCCCHHHHHHhcCccCCHHHHH
Confidence 4566666544 56999999999976665 8888888889999889888776654
No 132
>PLN03077 Protein ECB2; Provisional
Probab=26.99 E-value=7.5e+02 Score=25.92 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhh
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKa 163 (254)
.+-..|.+.|-+.|++.+|-+++.+++-.+ +..|--.+..|...|++..|....++.
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d----------~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKD----------AVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----------eeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345678899999999999999999986321 235888888999999999999888865
No 133
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=26.27 E-value=1.9e+02 Score=28.47 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=57.3
Q ss_pred cHHHHHHHhccCCCCCCCccCChHH---HHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc-Cc---------------
Q 025373 111 QWSKAAQMLSGIDLDSGMRVIDDTF---RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQ--------------- 171 (254)
Q Consensus 111 d~~~AA~vL~~I~lEt~~~~~s~~~---K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~-~~--------------- 171 (254)
+..+|+.-+..|.+.- .|+..- ----++|+|..|++.|+...|-+..+|=..++.+ +.
T Consensus 9 er~~~lsr~G~i~~n~---~IplkryfRsg~ei~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~d~ 85 (424)
T KOG2880|consen 9 ERVRALSRLGAIEVNK---NIPLKRYFRSGTEILRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKEDI 85 (424)
T ss_pred HHHHHHHhcCceeecC---CCCHHHhhhhhHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHHHH
Confidence 4556666666543322 223222 1224688899999999999999999998887753 11
Q ss_pred ---------------chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 172 ---------------QEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 172 ---------------d~~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
..+|.=+|..-+-.+.+.|.+.++-..+=.|.
T Consensus 86 ~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~~~E~~k~le~ 132 (424)
T KOG2880|consen 86 RKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKNLAERFKKLEV 132 (424)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHhhc
Confidence 12566677777777777777775554444444
No 134
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=25.56 E-value=70 Score=24.09 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhh
Q 025373 135 FRLSKCVQIARLYLEDDDAVNAEAFINK 162 (254)
Q Consensus 135 ~K~~~~l~i~rL~Le~~D~~~Ae~~~nK 162 (254)
+-++-|++=++.||++||+++|=.-++=
T Consensus 33 ~mA~~Y~~D~~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 33 EMAESYLEDGKYFLEKGDYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3677888888889999999998765543
No 135
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.32 E-value=3e+02 Score=26.55 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHhhc-CcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhccc--ch
Q 025373 77 ANYTLAQIQ-PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD--DA 153 (254)
Q Consensus 77 ~~~~L~~i~-~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~--D~ 153 (254)
|...+..+. |-.++-+.+..+.++.. ..++|..|++++.++. ++ ++++.+.+.|-.+++.|..=| |+
T Consensus 116 Gte~l~~~~~p~~~~~~~~~~~a~~l~-----n~~~y~aA~~~l~~l~----~r-l~~~~~~~~~~~l~~~y~~WD~fd~ 185 (379)
T PF09670_consen 116 GTERLRELENPYEVFGDREWRRAKELF-----NRYDYGAAARILEELL----RR-LPGREEYQRYKDLCEGYDAWDRFDH 185 (379)
T ss_pred cchhhhhcCCHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHH----Hh-CCchhhHHHHHHHHHHHHHHHccCH
Q ss_pred hhHHHHHhhhhhhccc---------------------------CcchhHHHHHHHHHHHHHhhhh-----hHHHHHHHHH
Q 025373 154 VNAEAFINKASFLVSS---------------------------SQQEVLNLQYKVCYARILDLKR-----KFLEAALRYY 201 (254)
Q Consensus 154 ~~Ae~~~nKas~~~~~---------------------------~~d~~LkL~yk~~~ari~d~~r-----kFLeAa~rY~ 201 (254)
..|.-+.++....... .....-++.|....--+..+.| +|-+|.-|.|
T Consensus 186 ~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlY 265 (379)
T PF09670_consen 186 KEALEYLEKLLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLY 265 (379)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
No 136
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=25.08 E-value=2.8e+02 Score=22.48 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH-HhhccH---
Q 025373 38 KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQI-QPRVVSFEEQVLIIREKLADLY-ESEQQW--- 112 (254)
Q Consensus 38 ~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i-~~~~is~Eeq~a~lr~~LA~i~-E~~~d~--- 112 (254)
...+..+++..++...++.+...|++.+. .+++.........|..+ .+.. + ..++.-=..+|+.+ +..+++
T Consensus 2 e~Li~~il~q~~s~~~a~~~~~~l~~~~g-pt~~~l~~~~~~~l~~~~~~~G--~-~~kA~~i~~~a~~~~~~~~~~~~~ 77 (158)
T cd00056 2 EVLVSEILSQQTTDKAVNKAYERLFERYG-PTPEALAAADEEELRELIRSLG--Y-RRKAKYLKELARAIVEGFGGLVLD 77 (158)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhC-CCHHHHHCCCHHHHHHHHHhcC--h-HHHHHHHHHHHHHHHHHcCCccCC
Confidence 35677788888899999999999998873 22233222222223222 2211 2 34444444444444 444443
Q ss_pred -HHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 113 -SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 113 -~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
.++-+.|..|| .- |. .-++.+ +...+. .|..-.++++.|+-..+..
T Consensus 78 ~~~~~~~L~~l~--GI-G~----~tA~~~---l~~~~~-~~~~pvD~~v~r~~~~~~~ 124 (158)
T cd00056 78 DPDAREELLALP--GV-GR----KTANVV---LLFALG-PDAFPVDTHVRRVLKRLGL 124 (158)
T ss_pred CcccHHHHHcCC--CC-CH----HHHHHH---HHHHCC-CCCCccchhHHHHHHHhCC
Confidence 55666666542 22 22 222332 223555 4444448888888776643
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.04 E-value=4.1e+02 Score=27.98 Aligned_cols=105 Identities=12% Similarity=-0.067 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 92 Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
|+.--++-.++-++.|..|..-.++.-|.+.+- +-|.+..+ .+.+...+++-.+-|.+..|+....++..+.++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-- 118 (694)
T PRK15179 45 EEAGRELLQQARQVLERHAAVHKPAAALPELLD--YVRRYPHT--ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-- 118 (694)
T ss_pred hhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHH--HHHhcccc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--
Confidence 444445555566666777777777766665321 11223332 668888888888888888888888888887765
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
......-+|+++-...+|=||...+......
T Consensus 119 ----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 119 ----SSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred ----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 3566667788888888888888888777764
No 138
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=24.41 E-value=1.9e+02 Score=24.06 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHH------HHHHHHHHHHhc
Q 025373 190 KRKFLEAALRYYDISQIQKRQIGDETIDEEALE------QALSAAVTCTIL 234 (254)
Q Consensus 190 ~rkFLeAa~rY~els~~~~~~~~~~~ide~er~------~~L~~Av~caIL 234 (254)
|..|.|.|..+++=+...+ ..++++||. .++..|.+|..=
T Consensus 43 Rdn~FeLc~e~r~~~~~l~-----~~l~~eE~~aL~~a~~a~a~AaVCLMs 88 (127)
T PF10799_consen 43 RDNLFELCREMRDKAPRLK-----LHLDPEEWEALRRAGEALASAAVCLMS 88 (127)
T ss_pred HHHHHHHHHHHHHhhHhhh-----hhcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7889999999999888654 677999885 345667777653
No 139
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.08 E-value=6.3e+02 Score=24.05 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc-
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ- 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~- 171 (254)
.++..+-+.-+..|...|...-||-.|..--== -..+.++.=+.+|-|-..+..++|-.-+|--++.|++++.--..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~--lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAKA--LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 344555566667777777765555444320000 01356788899999999999888888888888888887553110
Q ss_pred ------------c-----hhHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 ------------Q-----EVLNLQYKV--CYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 ------------d-----~~LkL~yk~--~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
. ..+.=.||. .++-++-++++|..|=++|++-|..
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 0 122223333 3445557788999999999998875
No 140
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=23.84 E-value=26 Score=35.41 Aligned_cols=87 Identities=20% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhH
Q 025373 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNA 156 (254)
Q Consensus 77 ~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~A 156 (254)
+..+|..+.+...+ .+|..+.+...|++...+|++.+|-+.|..++..+ ++.....++|.-.+++|-..+|+..|
T Consensus 43 A~~ll~~l~~~~L~-~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~----l~~~~~~~~~~l~A~a~~~~~~~l~A 117 (536)
T PF04348_consen 43 AQALLNQLDPQQLS-PSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQ----LPPEQQARYHQLRAQAYEQQGDPLAA 117 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcccccCC-hHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCccc----CCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34455555555554 46666777888999999999999999998855443 46777888888888899888888777
Q ss_pred HHHHhhhhhhcc
Q 025373 157 EAFINKASFLVS 168 (254)
Q Consensus 157 e~~~nKas~~~~ 168 (254)
-...-+...+..
T Consensus 118 a~~~i~l~~lL~ 129 (536)
T PF04348_consen 118 ARERIALDPLLP 129 (536)
T ss_dssp ------------
T ss_pred HHHHHHHhhhcC
Confidence 666555555553
No 141
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.42 E-value=2.8e+02 Score=21.14 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
....|..||..+-..|++.+|-+.|-.|--... ...++.==+..|++-++ |..+|+ .+..|=+|-++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr--~~~~~~ar~~ll~~f~~-lg~~~p-lv~~~RRkL~~ 87 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDR--DYEDDAARKRLLDIFEL-LGPGDP-LVSEYRRKLAS 87 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T--TCCCCHHHHHHHHHHHH-H-TT-H-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--cccccHHHHHHHHHHHH-cCCCCh-HHHHHHHHHHH
Confidence 347789999999999999999999887654442 33333322445555443 333443 33344444443
No 142
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.05 E-value=2.6e+02 Score=20.98 Aligned_cols=80 Identities=14% Similarity=0.006 Sum_probs=54.2
Q ss_pred HhhccHHHHHHHhccCCCCCCCccCChH---HHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHH
Q 025373 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDT---FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCY 183 (254)
Q Consensus 107 E~~~d~~~AA~vL~~I~lEt~~~~~s~~---~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ 183 (254)
-..||+.+|.+-|... +|..+...... .-.--.+..+.+...-|++..|-..++.+-.+..+..|....-.-...+
T Consensus 9 ~~~~dy~~A~d~L~~~-fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRY-FDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHH-HHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3567888887777642 23322222211 1222467788999999999999999999999998888877655555666
Q ss_pred HHHH
Q 025373 184 ARIL 187 (254)
Q Consensus 184 ari~ 187 (254)
+++.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 5554
No 143
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=22.16 E-value=7.8e+02 Score=24.41 Aligned_cols=95 Identities=17% Similarity=0.053 Sum_probs=67.0
Q ss_pred HHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc-----c-cCcchhHHHH
Q 025373 105 LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV-----S-SSQQEVLNLQ 178 (254)
Q Consensus 105 i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~-----~-~~~d~~LkL~ 178 (254)
+.-+-|+...|-++...++ .-+.|-+.+...|..+|..-||.-..|++..- . ...|.+ +
T Consensus 327 LAl~lg~L~~A~~~a~~~~------------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~-~-- 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD------------DPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDRE-K-- 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS------------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HH-H--
T ss_pred HHHhcCCHHHHHHHHHhcC------------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHH-H--
Confidence 3467799999999988865 12299999999999999999999999887632 1 223322 2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHH
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSA 227 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~ 227 (254)
-.-++.+...+.++.-|-+.|.-+-+. +++...|..
T Consensus 392 -L~kl~~~a~~~~~~n~af~~~~~lgd~------------~~cv~lL~~ 427 (443)
T PF04053_consen 392 -LSKLAKIAEERGDINIAFQAALLLGDV------------EECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHHT-H------------HHHHHHHHH
T ss_pred -HHHHHHHHHHccCHHHHHHHHHHcCCH------------HHHHHHHHH
Confidence 234678888899998888888766554 677777765
No 144
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.09 E-value=2e+02 Score=25.88 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCcchHhHH----HHHHHHHHHhcC---C----ChH---HHHHHHHHHHHhhcCcc-c---chHHHHH
Q 025373 35 VQAKKFIDHMLSDDVPLVVSR----QLLQTFAQELGR---L----EPE---TQKEIANYTLAQIQPRV-V---SFEEQVL 96 (254)
Q Consensus 35 ~~l~~~i~~~~~~~v~lv~sR----~~l~~~~~~l~~---l----~~~---~~~~v~~~~L~~i~~~~-i---s~Eeq~a 96 (254)
..+..+++.++.....+-..+ .++ .|...+.+ | +++ +-.+=+-.+++.|..-. . -.|+=..
T Consensus 33 r~~rdi~e~ll~~~~~~~a~~~k~l~i~-QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~~~~lhe~i~~ 111 (200)
T cd00280 33 RRTRDIAEALLVGPLKLTATQLKTLRIM-QFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSLPETLHEEIRK 111 (200)
T ss_pred HHHHHHHHHHHhccccccccchhHhHHH-HHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 445556666666555554444 222 22223322 2 122 23444445555554211 2 3566667
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI 143 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i 143 (254)
-|+++..-+|-+.|.|.+|.++|..+-=+++ +-..+-|+..+|+.
T Consensus 112 lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~--~~~~r~kL~~II~~ 156 (200)
T cd00280 112 LIKEQAVAVCMENGEFKKAEEVLKRLFSDPE--SQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcCCC--chhHHHHHHHHHHc
Confidence 7788889999999999999999998777665 33447788877776
No 145
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=21.42 E-value=2.1e+02 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccC
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGI 122 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I 122 (254)
+.+...-+|.+.|+|.+|.+++..-
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~~ 108 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEH 108 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHHc
Confidence 4566677788888898888888763
No 146
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.30 E-value=1.3e+02 Score=24.53 Aligned_cols=45 Identities=13% Similarity=0.302 Sum_probs=38.9
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcC
Q 025373 23 HILSSVISSN-DIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGR 67 (254)
Q Consensus 23 ~ll~~i~~~~-~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~ 67 (254)
-++++++... .++||..=|+++-.+++-+-.--|+|..++..|-.
T Consensus 60 RlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 60 RLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 3778888766 46999999999999999999999999999988754
No 147
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.36 E-value=3.7e+02 Score=24.11 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHh
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTI 233 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caI 233 (254)
..+|++.+.-.+|=|....-..+..+ .+.++.+|| ..|+.|..++|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~------~~eLt~eER-nLlsvayKn~i 50 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEM------NPELTEEER-NLLSVAYKNVI 50 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHT------SS---HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcc------CCCCCHHHH-HHHHHHHHhcc
Confidence 56899999999999999999999986 467788777 78888888887
Done!