Query 025373
Match_columns 254
No_of_seqs 143 out of 205
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 2.3E-35 7.7E-40 281.6 18.7 175 73-253 114-289 (445)
2 4b4t_R RPN7, 26S proteasome re 99.6 7.5E-17 2.6E-21 152.6 5.2 154 86-252 121-274 (429)
3 4b4t_Q 26S proteasome regulato 99.3 1.2E-10 4.2E-15 103.9 17.6 184 57-245 96-282 (434)
4 4b4t_O 26S proteasome regulato 99.1 8.1E-10 2.8E-14 103.8 12.4 149 102-251 82-240 (393)
5 3txn_A 26S proteasome regulato 98.6 7.4E-06 2.5E-10 77.6 22.1 210 19-237 20-235 (394)
6 4b4t_S RPN3, 26S proteasome re 98.2 5.2E-06 1.8E-10 81.4 9.5 108 132-245 226-334 (523)
7 3nf1_A KLC 1, kinesin light ch 97.1 0.065 2.2E-06 44.2 17.8 189 15-206 24-224 (311)
8 3ro3_A PINS homolog, G-protein 96.8 0.03 1E-06 41.0 11.9 112 93-206 6-118 (164)
9 3ro3_A PINS homolog, G-protein 96.8 0.02 6.8E-07 42.0 10.9 112 93-205 46-157 (164)
10 3u3w_A Transcriptional activat 96.6 0.14 4.9E-06 43.5 16.9 179 20-202 77-261 (293)
11 3ro2_A PINS homolog, G-protein 96.5 0.11 3.7E-06 42.7 15.0 111 94-206 221-332 (338)
12 3sf4_A G-protein-signaling mod 96.4 0.37 1.3E-05 41.2 18.3 132 71-206 204-336 (406)
13 4a1s_A PINS, partner of inscut 96.4 0.3 1E-05 42.4 17.5 113 93-206 220-332 (411)
14 4a1s_A PINS, partner of inscut 96.3 0.16 5.5E-06 44.2 15.2 133 70-206 239-372 (411)
15 3ro2_A PINS homolog, G-protein 96.2 0.38 1.3E-05 39.3 17.6 113 93-206 180-292 (338)
16 3gw4_A Uncharacterized protein 96.2 0.29 1E-05 37.9 17.7 133 70-206 42-176 (203)
17 1elr_A TPR2A-domain of HOP; HO 96.0 0.11 3.7E-06 36.9 10.9 104 95-206 3-108 (131)
18 4ga2_A E3 SUMO-protein ligase 95.7 0.025 8.6E-07 44.1 6.8 93 101-206 2-94 (150)
19 2qfc_A PLCR protein; TPR, HTH, 95.7 0.81 2.8E-05 38.8 18.3 180 20-203 77-262 (293)
20 3sf4_A G-protein-signaling mod 95.7 0.87 3E-05 38.8 20.3 112 93-205 184-295 (406)
21 3edt_B KLC 2, kinesin light ch 95.7 0.096 3.3E-06 42.2 10.3 112 94-206 41-156 (283)
22 3edt_B KLC 2, kinesin light ch 95.6 0.69 2.4E-05 37.0 17.3 96 70-167 101-199 (283)
23 2dba_A Smooth muscle cell asso 95.6 0.15 5.2E-06 37.3 10.4 103 93-206 25-128 (148)
24 3gw4_A Uncharacterized protein 95.5 0.5 1.7E-05 36.5 13.8 110 95-205 25-135 (203)
25 3nf1_A KLC 1, kinesin light ch 95.4 0.097 3.3E-06 43.1 9.5 112 94-205 25-139 (311)
26 3as5_A MAMA; tetratricopeptide 95.3 0.6 2.1E-05 34.8 14.4 168 16-206 6-173 (186)
27 3ulq_A Response regulator aspa 95.1 1.5 5.1E-05 38.2 17.2 119 70-192 200-318 (383)
28 2qfc_A PLCR protein; TPR, HTH, 95.0 1.2 4E-05 37.7 15.6 133 69-205 90-224 (293)
29 3q15_A PSP28, response regulat 95.0 1.7 5.7E-05 38.0 18.3 109 70-182 198-306 (378)
30 2vyi_A SGTA protein; chaperone 95.0 0.3 1E-05 34.3 10.1 101 92-206 8-109 (131)
31 2lni_A Stress-induced-phosphop 94.9 0.15 5.2E-06 36.4 8.4 95 98-206 18-113 (133)
32 3mkr_A Coatomer subunit epsilo 94.7 1.8 6.3E-05 37.2 18.8 95 96-206 101-195 (291)
33 3u3w_A Transcriptional activat 94.6 0.42 1.4E-05 40.5 11.8 100 102-204 81-182 (293)
34 3uq3_A Heat shock protein STI1 94.6 1.3 4.4E-05 35.1 17.5 179 17-206 4-202 (258)
35 4gco_A Protein STI-1; structur 94.5 0.56 1.9E-05 35.3 11.0 103 90-206 7-110 (126)
36 1elw_A TPR1-domain of HOP; HOP 94.4 0.46 1.6E-05 32.8 9.8 97 97-206 5-101 (118)
37 3sz7_A HSC70 cochaperone (SGT) 94.3 0.51 1.7E-05 36.2 10.6 100 94-207 9-109 (164)
38 3upv_A Heat shock protein STI1 94.1 1 3.4E-05 32.7 11.5 98 96-207 4-102 (126)
39 4ga2_A E3 SUMO-protein ligase 94.1 0.08 2.7E-06 41.1 5.6 98 91-202 26-124 (150)
40 2xev_A YBGF; tetratricopeptide 94.1 0.35 1.2E-05 34.8 8.8 100 100-206 6-105 (129)
41 2ho1_A Type 4 fimbrial biogene 94.1 1.9 6.3E-05 34.5 18.1 167 18-205 37-203 (252)
42 3ulq_A Response regulator aspa 94.0 0.76 2.6E-05 40.1 12.4 131 72-205 161-292 (383)
43 3as5_A MAMA; tetratricopeptide 94.0 1.1 3.7E-05 33.3 11.7 96 96-205 42-138 (186)
44 3uq3_A Heat shock protein STI1 94.0 1 3.6E-05 35.6 12.1 102 96-206 5-108 (258)
45 4b4t_Q 26S proteasome regulato 94.0 0.094 3.2E-06 46.1 6.4 110 95-205 94-203 (434)
46 2ifu_A Gamma-SNAP; membrane fu 93.9 0.57 1.9E-05 40.3 11.1 107 94-205 74-183 (307)
47 2ifu_A Gamma-SNAP; membrane fu 93.8 0.5 1.7E-05 40.6 10.7 108 94-204 114-222 (307)
48 2e2e_A Formate-dependent nitri 93.8 0.59 2E-05 36.0 10.1 96 97-206 45-144 (177)
49 4gcn_A Protein STI-1; structur 93.6 0.59 2E-05 35.1 9.5 100 96-203 8-109 (127)
50 1a17_A Serine/threonine protei 93.5 0.56 1.9E-05 34.9 9.3 98 95-206 12-110 (166)
51 3mv2_B Coatomer subunit epsilo 93.5 0.19 6.4E-06 45.9 7.7 103 99-206 103-207 (310)
52 2xpi_A Anaphase-promoting comp 93.5 3.6 0.00012 37.5 16.4 104 97-206 476-579 (597)
53 1na0_A Designed protein CTPR3; 93.5 0.9 3.1E-05 31.5 9.8 98 96-206 9-106 (125)
54 2fbn_A 70 kDa peptidylprolyl i 93.2 0.62 2.1E-05 36.9 9.5 105 96-206 38-151 (198)
55 2l6j_A TPR repeat-containing p 93.2 0.37 1.3E-05 33.6 7.4 70 97-174 5-75 (111)
56 3q15_A PSP28, response regulat 93.1 0.54 1.9E-05 41.2 9.8 131 72-205 119-250 (378)
57 2kck_A TPR repeat; tetratricop 93.1 0.18 6.2E-06 34.7 5.5 95 100-206 10-106 (112)
58 4i17_A Hypothetical protein; T 93.0 2.5 8.6E-05 33.7 13.1 101 98-205 44-145 (228)
59 2q7f_A YRRB protein; TPR, prot 92.8 2.8 9.6E-05 32.9 12.9 96 96-205 91-187 (243)
60 3fp2_A TPR repeat-containing p 92.7 4.2 0.00014 36.3 15.3 101 98-205 346-456 (537)
61 3gyz_A Chaperone protein IPGC; 92.7 1.3 4.4E-05 35.1 10.7 118 75-206 10-133 (151)
62 3vtx_A MAMA; tetratricopeptide 92.7 0.6 2E-05 36.0 8.5 65 96-168 5-70 (184)
63 3n71_A Histone lysine methyltr 92.7 5.3 0.00018 38.0 16.8 135 68-205 323-463 (490)
64 3qky_A Outer membrane assembly 92.7 0.72 2.4E-05 38.0 9.5 106 94-206 13-126 (261)
65 2fo7_A Synthetic consensus TPR 92.7 1.1 3.7E-05 31.2 9.3 96 97-205 36-131 (136)
66 2fo7_A Synthetic consensus TPR 92.6 0.86 2.9E-05 31.8 8.7 95 99-206 4-98 (136)
67 1a17_A Serine/threonine protei 92.5 1.1 3.9E-05 33.1 9.7 98 96-205 47-145 (166)
68 2ho1_A Type 4 fimbrial biogene 92.5 3.4 0.00012 33.0 15.1 98 95-206 140-238 (252)
69 1hh8_A P67PHOX, NCF-2, neutrop 92.4 1.1 3.6E-05 35.2 9.8 103 96-206 37-150 (213)
70 2xcb_A PCRH, regulatory protei 92.4 0.72 2.5E-05 34.7 8.5 100 93-206 15-115 (142)
71 1hh8_A P67PHOX, NCF-2, neutrop 92.3 1.2 4.1E-05 34.9 10.0 91 100-206 10-100 (213)
72 1qqe_A Vesicular transport pro 92.3 0.74 2.5E-05 39.3 9.4 111 94-206 75-187 (292)
73 1qqe_A Vesicular transport pro 92.1 0.63 2.2E-05 39.7 8.7 104 100-205 41-146 (292)
74 1p5q_A FKBP52, FK506-binding p 92.0 0.44 1.5E-05 42.1 7.8 107 94-206 145-259 (336)
75 3hym_B Cell division cycle pro 92.0 4.4 0.00015 33.2 16.4 100 99-206 162-265 (330)
76 3sz7_A HSC70 cochaperone (SGT) 92.0 0.7 2.4E-05 35.4 8.1 84 96-187 45-129 (164)
77 1elr_A TPR2A-domain of HOP; HO 91.9 0.62 2.1E-05 32.8 7.1 72 96-168 38-110 (131)
78 3q49_B STIP1 homology and U bo 91.6 1.4 4.6E-05 31.9 8.9 99 96-208 9-108 (137)
79 3rkv_A Putative peptidylprolyl 91.4 3.6 0.00012 31.2 11.6 105 96-206 11-126 (162)
80 2y4t_A DNAJ homolog subfamily 91.3 6.9 0.00024 34.0 16.3 109 96-206 211-324 (450)
81 2kat_A Uncharacterized protein 91.2 0.76 2.6E-05 33.0 7.1 67 96-170 19-86 (115)
82 1hz4_A MALT regulatory protein 91.2 6.6 0.00023 33.6 17.2 131 70-205 69-202 (373)
83 1hxi_A PEX5, peroxisome target 91.1 1 3.5E-05 33.5 8.0 93 100-206 21-114 (121)
84 2pl2_A Hypothetical conserved 90.9 3.7 0.00013 33.1 11.9 94 96-204 118-212 (217)
85 2q7f_A YRRB protein; TPR, prot 90.9 4.8 0.00016 31.5 15.1 115 70-206 107-222 (243)
86 2vq2_A PILW, putative fimbrial 90.7 4.6 0.00016 31.0 17.6 168 18-206 8-176 (225)
87 2vgx_A Chaperone SYCD; alterna 90.4 1.1 3.8E-05 34.5 7.8 100 93-206 18-118 (148)
88 4eqf_A PEX5-related protein; a 90.2 7.8 0.00027 32.9 14.4 99 96-208 213-312 (365)
89 1ihg_A Cyclophilin 40; ppiase 90.0 3.4 0.00012 37.2 11.9 105 96-206 223-336 (370)
90 2vyi_A SGTA protein; chaperone 89.8 1.4 4.8E-05 30.8 7.4 65 96-168 46-111 (131)
91 2xpi_A Anaphase-promoting comp 89.8 11 0.00039 34.1 19.5 103 97-206 442-545 (597)
92 1fch_A Peroxisomal targeting s 89.6 8.4 0.00029 32.3 16.0 98 96-207 217-315 (368)
93 1xnf_A Lipoprotein NLPI; TPR, 89.6 1.7 5.7E-05 35.0 8.6 63 96-166 43-106 (275)
94 3qky_A Outer membrane assembly 89.6 7.4 0.00025 31.7 14.3 106 96-206 52-177 (261)
95 3qww_A SET and MYND domain-con 89.5 1.2 4.1E-05 41.9 8.7 121 54-176 298-424 (433)
96 2vq2_A PILW, putative fimbrial 89.5 5.9 0.0002 30.4 15.1 116 70-204 93-208 (225)
97 3hym_B Cell division cycle pro 89.5 7.7 0.00026 31.7 15.1 105 96-206 193-299 (330)
98 3cv0_A Peroxisome targeting si 89.2 1.7 5.7E-05 35.8 8.5 97 96-206 172-269 (327)
99 3rkv_A Putative peptidylprolyl 89.1 2 6.8E-05 32.7 8.3 88 92-189 59-148 (162)
100 1kt0_A FKBP51, 51 kDa FK506-bi 89.0 1.2 4.2E-05 41.1 8.2 107 94-206 266-380 (457)
101 2vsy_A XCC0866; transferase, g 88.8 2.9 0.0001 38.9 10.8 96 96-205 23-119 (568)
102 3u4t_A TPR repeat-containing p 88.6 1.8 6.2E-05 34.9 8.1 94 102-205 43-136 (272)
103 4f3v_A ESX-1 secretion system 88.6 4.9 0.00017 35.9 11.6 102 92-205 98-199 (282)
104 3qwp_A SET and MYND domain-con 88.4 2.3 7.9E-05 39.7 9.8 107 67-175 300-412 (429)
105 1na3_A Designed protein CTPR2; 88.4 2.1 7.2E-05 28.5 7.2 70 131-206 3-72 (91)
106 2gw1_A Mitochondrial precursor 88.3 2.2 7.5E-05 37.7 9.1 97 96-206 6-102 (514)
107 3u4t_A TPR repeat-containing p 88.2 1.4 4.8E-05 35.6 7.2 92 102-206 80-171 (272)
108 3cv0_A Peroxisome targeting si 88.2 1.9 6.6E-05 35.4 8.2 99 96-202 206-311 (327)
109 1w3b_A UDP-N-acetylglucosamine 88.2 12 0.0004 32.2 13.5 21 100-120 173-193 (388)
110 3ma5_A Tetratricopeptide repea 88.1 1.4 4.7E-05 31.4 6.4 70 96-173 7-77 (100)
111 2pl2_A Hypothetical conserved 88.1 9 0.00031 30.8 16.0 161 21-206 8-180 (217)
112 3upv_A Heat shock protein STI1 88.1 1.2 4.2E-05 32.2 6.2 64 96-167 38-102 (126)
113 3ieg_A DNAJ homolog subfamily 88.0 10 0.00035 31.2 18.3 108 97-206 189-301 (359)
114 3ieg_A DNAJ homolog subfamily 88.0 10 0.00035 31.2 20.6 99 99-206 237-335 (359)
115 2gw1_A Mitochondrial precursor 88.0 2.6 8.9E-05 37.2 9.3 101 91-205 232-332 (514)
116 4i17_A Hypothetical protein; T 87.9 2.2 7.5E-05 34.0 8.1 96 98-206 9-105 (228)
117 3fp2_A TPR repeat-containing p 87.4 15 0.00051 32.6 14.7 102 97-206 379-491 (537)
118 3q49_B STIP1 homology and U bo 87.4 2.4 8.4E-05 30.5 7.5 66 96-169 43-109 (137)
119 4abn_A Tetratricopeptide repea 87.4 4.6 0.00016 37.2 11.0 97 96-206 137-250 (474)
120 2xev_A YBGF; tetratricopeptide 87.2 1.1 3.9E-05 32.0 5.5 68 97-169 40-108 (129)
121 2fbn_A 70 kDa peptidylprolyl i 87.2 2.6 8.9E-05 33.1 8.1 84 96-189 88-172 (198)
122 2vsy_A XCC0866; transferase, g 87.0 7 0.00024 36.3 12.1 97 96-206 57-157 (568)
123 1na3_A Designed protein CTPR2; 86.8 4.4 0.00015 26.8 8.0 65 96-168 9-74 (91)
124 1p5q_A FKBP52, FK506-binding p 86.4 4.1 0.00014 35.7 9.7 90 95-198 195-285 (336)
125 2kck_A TPR repeat; tetratricop 86.2 1.8 6.3E-05 29.4 6.0 67 97-169 41-109 (112)
126 3urz_A Uncharacterized protein 85.3 5.6 0.00019 31.8 9.3 93 101-206 9-117 (208)
127 3k9i_A BH0479 protein; putativ 85.3 1.5 5.2E-05 31.7 5.3 67 94-167 25-91 (117)
128 2c2l_A CHIP, carboxy terminus 85.0 3.6 0.00012 35.0 8.4 97 97-207 5-102 (281)
129 1xnf_A Lipoprotein NLPI; TPR, 84.5 3.6 0.00012 32.9 7.8 94 96-204 77-171 (275)
130 2kc7_A BFR218_protein; tetratr 84.2 3.3 0.00011 28.4 6.6 61 101-169 5-67 (99)
131 2y4t_A DNAJ homolog subfamily 83.8 21 0.0007 30.9 18.1 97 101-206 262-358 (450)
132 4b4t_P 26S proteasome regulato 83.7 28 0.00096 32.4 15.7 90 116-205 116-205 (445)
133 4gyw_A UDP-N-acetylglucosamine 83.7 17 0.00056 36.3 13.7 165 17-205 8-173 (723)
134 2dba_A Smooth muscle cell asso 83.3 2.5 8.5E-05 30.5 5.8 66 95-168 64-130 (148)
135 2if4_A ATFKBP42; FKBP-like, al 83.1 3.1 0.00011 36.6 7.4 106 95-206 178-293 (338)
136 2xcb_A PCRH, regulatory protei 81.7 5.1 0.00017 29.8 7.2 66 96-169 52-118 (142)
137 1w3b_A UDP-N-acetylglucosamine 81.7 24 0.00081 30.1 14.0 61 139-205 307-367 (388)
138 1na0_A Designed protein CTPR3; 81.6 5.6 0.00019 27.2 6.9 69 132-206 4-72 (125)
139 3vtx_A MAMA; tetratricopeptide 81.3 15 0.00053 27.7 14.1 96 96-205 73-169 (184)
140 4gco_A Protein STI-1; structur 80.6 4.4 0.00015 30.2 6.4 71 96-176 47-118 (126)
141 4abn_A Tetratricopeptide repea 80.5 35 0.0012 31.3 14.5 96 96-203 213-318 (474)
142 1ihg_A Cyclophilin 40; ppiase 80.3 9.7 0.00033 34.2 9.7 77 91-177 268-345 (370)
143 3urz_A Uncharacterized protein 79.6 10 0.00036 30.2 8.8 66 96-169 54-120 (208)
144 2lni_A Stress-induced-phosphop 78.9 12 0.00041 26.0 8.1 71 130-206 9-79 (133)
145 1elw_A TPR1-domain of HOP; HOP 77.9 13 0.00046 25.0 9.0 65 136-206 3-67 (118)
146 1fch_A Peroxisomal targeting s 76.7 32 0.0011 28.7 16.0 65 136-206 216-280 (368)
147 2yhc_A BAMD, UPF0169 lipoprote 76.5 15 0.00052 29.4 9.0 104 98-206 6-125 (225)
148 3ma5_A Tetratricopeptide repea 76.3 10 0.00036 26.6 7.1 64 137-206 7-70 (100)
149 4gyw_A UDP-N-acetylglucosamine 75.6 18 0.00061 36.0 10.9 97 96-206 43-140 (723)
150 1kt0_A FKBP51, 51 kDa FK506-bi 75.6 12 0.00041 34.4 9.0 90 94-197 315-405 (457)
151 3qou_A Protein YBBN; thioredox 75.4 15 0.00052 31.0 9.1 100 98-206 119-248 (287)
152 3k9i_A BH0479 protein; putativ 72.1 24 0.0008 25.1 8.4 68 133-206 23-90 (117)
153 2r5s_A Uncharacterized protein 70.7 25 0.00085 26.9 8.6 61 100-167 10-70 (176)
154 4gcn_A Protein STI-1; structur 70.6 6.7 0.00023 29.0 5.1 70 97-167 43-113 (127)
155 3i5p_A Nucleoporin NUP170; hel 70.6 5.7 0.0002 38.7 5.8 55 176-236 216-271 (525)
156 2l6j_A TPR repeat-containing p 70.3 22 0.00076 24.1 7.5 65 136-206 3-67 (111)
157 2kat_A Uncharacterized protein 70.3 18 0.00061 25.4 7.2 63 138-206 20-82 (115)
158 1wao_1 Serine/threonine protei 70.2 6.3 0.00021 36.7 5.8 94 96-201 40-134 (477)
159 2wm9_A Dedicator of cytokinesi 69.1 30 0.001 32.4 10.2 68 100-167 15-118 (428)
160 3mkr_A Coatomer subunit epsilo 68.9 53 0.0018 27.8 17.5 99 97-206 131-229 (291)
161 3qou_A Protein YBBN; thioredox 68.9 51 0.0017 27.7 16.7 103 96-202 151-280 (287)
162 4g1t_A Interferon-induced prot 68.7 28 0.00096 30.4 9.5 110 96-206 51-167 (472)
163 2if4_A ATFKBP42; FKBP-like, al 68.4 4.2 0.00014 35.8 4.0 63 98-168 232-295 (338)
164 2e2e_A Formate-dependent nitri 67.7 24 0.00083 26.6 7.9 66 96-169 78-147 (177)
165 2v5f_A Prolyl 4-hydroxylase su 67.1 10 0.00034 27.4 5.3 69 100-169 9-78 (104)
166 2vgx_A Chaperone SYCD; alterna 67.0 18 0.00061 27.4 7.0 66 135-206 19-84 (148)
167 3mv2_B Coatomer subunit epsilo 66.5 74 0.0025 28.6 12.9 134 95-250 135-281 (310)
168 3ffl_A Anaphase-promoting comp 64.3 19 0.00066 30.1 7.0 67 137-203 20-89 (167)
169 1wao_1 Serine/threonine protei 63.8 5.5 0.00019 37.1 4.0 92 101-206 11-103 (477)
170 3n71_A Histone lysine methyltr 63.1 65 0.0022 30.5 11.4 100 103-205 316-421 (490)
171 1ouv_A Conserved hypothetical 62.5 29 0.00099 28.1 7.8 29 137-165 74-106 (273)
172 3gyz_A Chaperone protein IPGC; 62.5 21 0.00071 27.8 6.7 65 136-206 35-99 (151)
173 3ffl_A Anaphase-promoting comp 62.2 13 0.00043 31.2 5.5 33 95-127 121-153 (167)
174 4eqf_A PEX5-related protein; a 61.9 70 0.0024 26.8 17.5 63 137-205 213-275 (365)
175 1hz4_A MALT regulatory protein 61.8 73 0.0025 26.9 22.5 132 70-205 190-321 (373)
176 2kc7_A BFR218_protein; tetratr 61.5 34 0.0012 23.0 9.8 61 141-206 4-64 (99)
177 3txn_A 26S proteasome regulato 60.3 1.1E+02 0.0037 28.4 14.0 113 67-202 51-164 (394)
178 1hxi_A PEX5, peroxisome target 59.5 35 0.0012 24.8 7.2 64 137-206 17-80 (121)
179 3qwp_A SET and MYND domain-con 56.6 38 0.0013 31.3 8.4 95 107-204 298-398 (429)
180 3mkq_A Coatomer beta'-subunit; 56.3 92 0.0031 29.4 11.1 86 105-206 661-752 (814)
181 2v5f_A Prolyl 4-hydroxylase su 55.5 44 0.0015 23.8 7.0 69 138-206 6-75 (104)
182 2yin_A DOCK2, dedicator of cyt 54.9 49 0.0017 31.1 8.9 73 95-167 34-122 (436)
183 2ond_A Cleavage stimulation fa 53.7 66 0.0023 26.9 8.8 28 138-165 204-231 (308)
184 1ouv_A Conserved hypothetical 50.7 77 0.0026 25.5 8.5 89 100-205 78-178 (273)
185 2pzi_A Probable serine/threoni 49.7 23 0.00077 34.4 5.8 64 97-168 434-498 (681)
186 2r5s_A Uncharacterized protein 49.4 83 0.0028 23.8 11.7 102 91-206 35-137 (176)
187 1xi4_A Clathrin heavy chain; a 46.4 89 0.003 34.6 10.1 51 101-166 1200-1250(1630)
188 2c2l_A CHIP, carboxy terminus 44.6 81 0.0028 26.3 8.0 64 137-206 4-67 (281)
189 2ond_A Cleavage stimulation fa 43.3 1.4E+02 0.0049 24.8 15.1 64 97-167 100-164 (308)
190 3mkq_B Coatomer subunit alpha; 41.8 1.1E+02 0.0038 25.4 8.2 93 107-227 16-114 (177)
191 2ooe_A Cleavage stimulation fa 39.8 1.2E+02 0.004 27.5 8.8 65 96-167 321-386 (530)
192 2h6f_A Protein farnesyltransfe 36.9 1.4E+02 0.0049 26.7 8.8 62 138-205 167-228 (382)
193 2pzi_A Probable serine/threoni 36.6 1.1E+02 0.0037 29.5 8.4 92 107-206 402-496 (681)
194 3rjv_A Putative SEL1 repeat pr 34.4 49 0.0017 26.3 4.7 64 98-166 87-158 (212)
195 2h56_A DNA-3-methyladenine gly 33.6 1.4E+02 0.0047 25.4 7.7 84 19-107 31-119 (233)
196 4f3v_A ESX-1 secretion system 33.0 2.5E+02 0.0086 24.6 15.6 100 98-206 137-237 (282)
197 4fjo_A DNA repair protein REV1 30.9 1.3E+02 0.0045 22.4 6.3 69 17-86 10-84 (97)
198 2jpu_A ORF C02003 protein; sol 29.9 22 0.00076 28.5 1.8 23 135-157 5-27 (129)
199 3qww_A SET and MYND domain-con 29.0 1.3E+02 0.0045 27.8 7.3 93 108-203 310-408 (433)
200 2xze_A STAM-binding protein; h 28.0 43 0.0015 27.0 3.2 33 136-168 39-71 (146)
201 2yg9_A DNA-3-methyladenine gly 27.8 1E+02 0.0035 26.1 5.8 84 20-108 41-128 (225)
202 3vu7_H DNA repair protein REV1 27.0 1.5E+02 0.005 23.4 6.2 68 18-86 38-111 (124)
203 3i5p_A Nucleoporin NUP170; hel 26.7 56 0.0019 31.8 4.3 45 97-143 218-262 (525)
204 1b89_A Protein (clathrin heavy 25.3 91 0.0031 29.7 5.5 78 101-205 99-176 (449)
205 3bqo_A Telomeric repeat-bindin 23.9 3.5E+02 0.012 23.3 9.3 108 35-143 42-163 (211)
206 2rg8_A Programmed cell death p 23.1 1.5E+02 0.005 24.1 5.7 67 22-91 47-121 (165)
207 2h6f_A Protein farnesyltransfe 22.9 1.6E+02 0.0054 26.4 6.4 62 100-168 170-231 (382)
208 2hr2_A Hypothetical protein; a 21.5 3.2E+02 0.011 21.9 7.4 78 128-205 2-85 (159)
209 1klx_A Cysteine rich protein B 21.4 1.1E+02 0.0039 22.6 4.4 58 100-166 61-126 (138)
210 3t97_B Nuclear pore complex pr 21.4 1.5E+02 0.0051 21.1 4.6 32 174-205 21-52 (65)
211 2yhc_A BAMD, UPF0169 lipoprote 21.3 3E+02 0.01 21.5 17.8 102 102-206 102-213 (225)
212 3i0w_A 8-oxoguanine-DNA-glycos 21.2 3.3E+02 0.011 23.8 8.1 119 34-168 113-252 (290)
213 3tjy_A Effector protein hopab3 20.9 2.7E+02 0.0093 20.9 7.4 47 20-68 6-54 (94)
214 2wb7_A PT26-6P; extra chromoso 20.6 6E+02 0.02 24.8 10.2 109 68-201 391-499 (526)
215 4g26_A Pentatricopeptide repea 20.5 2.8E+02 0.0095 25.9 7.8 94 19-123 106-202 (501)
216 4g26_A Pentatricopeptide repea 20.4 5.2E+02 0.018 24.0 13.8 169 20-205 28-203 (501)
217 3mkq_A Coatomer beta'-subunit; 20.3 1.3E+02 0.0045 28.3 5.5 58 97-160 682-746 (814)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=281.60 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccc
Q 025373 73 QKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 152 (254)
Q Consensus 73 ~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D 152 (254)
.+.-...+|+.+++|+||+|.++++++..||++||.+|+|.+|+++|++|++||+ +.|++.+|+++|++|+|+|++.+|
T Consensus 114 ~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~q~rl~l~~~d 192 (445)
T 4b4t_P 114 TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILEQMELSILKGD 192 (445)
T ss_dssp HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHCCC
Confidence 3445567888999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred hhhHHHHHhhhhhhcc-cCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHH
Q 025373 153 AVNAEAFINKASFLVS-SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTC 231 (254)
Q Consensus 153 ~~~Ae~~~nKas~~~~-~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~c 231 (254)
|++|+++++|++...+ ...+++++++|+.|++++++++++|++||++|++++.++. ..-|+..|..+|..+|+|
T Consensus 193 ~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 193 YSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA-----IKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHH
Confidence 9999999999998665 4678899999999999999999999999999999999854 234889999999999999
Q ss_pred HhcCCCCchhhHHHHHHhhccC
Q 025373 232 TILAAAGPQRSRVLATLYKVNN 253 (254)
Q Consensus 232 aILApagp~RSrlL~~LykDeR 253 (254)
+||+|+||+|+++++++++|++
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSS
T ss_pred HHhCCCCchHHHHHHHHhhccc
Confidence 9999999999999999999986
No 2
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.5e-17 Score=152.61 Aligned_cols=154 Identities=16% Similarity=0.041 Sum_probs=135.4
Q ss_pred CcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 86 PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 86 ~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
.++...|.++.+....||+.|...||+.+|.+++..+...+++ ...|+++|+.++|+|++.+||..|+.+++|++.
T Consensus 121 ~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 121 EEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp HHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455667788888899999999999999999999999888763 378999999999999999999999999999999
Q ss_pred hcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q 025373 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVL 245 (254)
Q Consensus 166 ~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caILApagp~RSrlL 245 (254)
++....|++.+.+|+.|.++++.+.|+|.+||+.|++++.+ +... +.......|++|++++.+++.|+++.
T Consensus 197 ~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t-------~~~~--e~~~~~~~~~y~~l~al~~~~r~~l~ 267 (429)
T 4b4t_R 197 MIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT-------FTSI--ELTSYESIATYASVTGLFTLERTDLK 267 (429)
T ss_dssp HHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH-------SCCS--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc-------CCcc--chhhHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999886 2222 33567777888888888899999998
Q ss_pred HHHhhcc
Q 025373 246 ATLYKVN 252 (254)
Q Consensus 246 ~~LykDe 252 (254)
..++.++
T Consensus 268 ~~v~~~~ 274 (429)
T 4b4t_R 268 SKVIDSP 274 (429)
T ss_dssp HSSSSSH
T ss_pred HHHhcCH
Confidence 8877653
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.2e-10 Score=103.95 Aligned_cols=184 Identities=10% Similarity=0.060 Sum_probs=142.3
Q ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChH
Q 025373 57 LLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT 134 (254)
Q Consensus 57 ~l~~~~~~l~~l~--~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~ 134 (254)
.+...+..+...+ .+..+++...++........ +..++++...||.+|+..|+|.+|...+..+..++. +.++..
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~ 172 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK-KLDDKP 172 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSSCST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-hcccch
Confidence 3334444444442 45566676666665433222 334688889999999999999999999999988886 578889
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCC
Q 025373 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGD 213 (254)
Q Consensus 135 ~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~-d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~ 213 (254)
.++++|+.++++|+..+|+.+|..+++|+..+..... ++.++..++.++++++.+.++|.+|+..|.+...+... ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~--~~ 250 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN--LT 250 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--TT
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh--hh
Confidence 9999999999999999999999999999998876644 46888999999999999999999999999999876431 11
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q 025373 214 ETIDEEALEQALSAAVTCTILAAAGPQRSRVL 245 (254)
Q Consensus 214 ~~ide~er~~~L~~Av~caILApagp~RSrlL 245 (254)
.......+...+...++|.++.+.++.....+
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 282 (434)
T 4b4t_Q 251 THNSYEKACQVLKYMLLSKIMLNLIDDVKNIL 282 (434)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhccchhHHHhHH
Confidence 22345677888888888888877665555444
No 4
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.07 E-value=8.1e-10 Score=103.82 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=119.4
Q ss_pred HHHHHHhhccHHHHHHHhccCCCC-----CC-----CccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 102 LADLYESEQQWSKAAQMLSGIDLD-----SG-----MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I~lE-----t~-----~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
+..+.+...|..+|...|.++--. +. +..-..+..+-+.+.|+|+||+.+|...|+.+++++..++++.+
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 344556667778887777655211 11 11123356889999999999999999999999999999999988
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHhhc
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKV 251 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caILApagp~RSrlL~~LykD 251 (254)
+.+.+++++.++++..+++++|..+..+|+.+++...- .....++++++....-.+++|++++|.++.++++|+.-+.+
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~-~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~ 240 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL-EPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIME 240 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTT
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-cccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHH
Confidence 99999999999999999999999999999999875320 01235689999999999999999999999999999876644
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.61 E-value=7.4e-06 Score=77.59 Aligned_cols=210 Identities=10% Similarity=0.099 Sum_probs=157.1
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHh--cCCcchHhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhhcCcccchHHH
Q 025373 19 EQYKHILSSVISSNDIVQAKKFIDHML--SDDVPLVVSRQLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQ 94 (254)
Q Consensus 19 ~~y~~ll~~i~~~~~~~~l~~~i~~~~--~~~v~lv~sR~~l~~~~~~l~~l~--~~~~~~v~~~~L~~i~~~~is~Eeq 94 (254)
...-.|..-....++.+.|..++.++. =..++--=+-.++..++..+..+| .+...+++...+.--..-+-.|--|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556678888888888763 244555556667778888888875 3446777776665443222223222
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cch
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~ 173 (254)
++--.|++.|...|+|.+|.+++..+.=|-. +.=+...-+++|+-..++|.+-+|+..+..++.++....... .+|
T Consensus 100 --~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 100 --SLEARLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2333689999999999999888777655443 111246899999999999999999999999999998877654 789
Q ss_pred hHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHHHHhcCCC
Q 025373 174 VLNLQYKVCYARILD-LKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAA 237 (254)
Q Consensus 174 ~LkL~yk~~~ari~d-~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~caILApa 237 (254)
.++-.++.|.+.++- ..|+|-+|+..|+|-..+ ...++...+.++|.-.++|++++.-
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~------f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEG------FDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH------HTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc------ccccccHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 899999999999997533 1456667789999999999999764
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.2e-06 Score=81.44 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhhhhhh
Q 025373 132 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYD-ISQIQKRQ 210 (254)
Q Consensus 132 s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~e-ls~~~~~~ 210 (254)
+.+-+.-++.-+.|+||+.+++.+|+.+++|+..-....++.+ ..+|+.+.+||...+++|.+|..++.. +..+++
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q-~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~-- 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSL-EARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH-- 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC--
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--
Confidence 4556788999999999999999999999999985555556655 489999999999999999998655444 233321
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhcCCCCchhhHHH
Q 025373 211 IGDETIDEEALEQALSAAVTCTILAAAGPQRSRVL 245 (254)
Q Consensus 211 ~~~~~ide~er~~~L~~Av~caILApagp~RSrlL 245 (254)
.......+..+++.+|.|-+|....|.|+.+.
T Consensus 303 ---~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~ 334 (523)
T 4b4t_S 303 ---NSKSLGFLQQSNKLHCCIQLLMGDIPELSFFH 334 (523)
T ss_dssp ---SSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHT
T ss_pred ---chhhhhHHHHHHHHHHhHHhhcCCCCChHHhh
Confidence 23456788999999999999999999988764
No 7
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.065 Score=44.15 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHhc--------CCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 025373 15 RQKIEQYKHILSSVISSNDIVQAKKFIDHMLS--------DDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQP 86 (254)
Q Consensus 15 ~~~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~--------~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~ 86 (254)
......|..+-......++.+.-..+.+..+. +..........+..+..... ..+........++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIREK 101 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH
Confidence 34456677666666667777555555555443 33333333333333333332 334445555555554321
Q ss_pred cccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCcc--CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhh
Q 025373 87 RVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (254)
Q Consensus 87 ~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~--~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas 164 (254)
....-..........++.+|...|++.+|.+.+...- +..... -........|...+++|...+++..|..+++++-
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1001123456777889999999999999999887521 000000 1224567889999999999999999999999998
Q ss_pred hhcccC--cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 165 FLVSSS--QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 165 ~~~~~~--~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+.... .+.......+..+++++-...+|-+|-..|.+....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 876432 333445677788899999999999998888887653
No 8
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.77 E-value=0.03 Score=41.03 Aligned_cols=112 Identities=10% Similarity=0.003 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
...+.+-..++.++...|++.+|...+.. +.+-. ..-+.......+..++.+|...+++..|..+.+++-.+.....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 34566778899999999999999888754 22211 1123455678999999999999999999999999999887777
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++......+..++.++-...+|-+|-..|.+....
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 87777888889999999999998888777766543
No 9
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.76 E-value=0.02 Score=42.01 Aligned_cols=112 Identities=10% Similarity=-0.013 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
...+.....++.+|...|++.+|.+.+...- +-....-+.......+..++.+|...+++..|..+.+++-.+.....+
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 124 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence 3445677889999999999999998876521 111011134456889999999999999999999999999988876667
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+......+..++.++-...+|-+|-..|.+...
T Consensus 125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777788889999888888888777665544
No 10
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.63 E-value=0.14 Score=43.54 Aligned_cols=179 Identities=16% Similarity=0.041 Sum_probs=114.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHH---HHHHHhcCC-ChHHHHHHHHHHHHhhcCcccchHHHH
Q 025373 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQ---TFAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQV 95 (254)
Q Consensus 20 ~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~---~~~~~l~~l-~~~~~~~v~~~~L~~i~~~~is~Eeq~ 95 (254)
.+...+...+..++.+....+++.++...-..-..++++. .+....... +.+..+.....+|....+..-.+ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~~ 154 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--QN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--HH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--HH
Confidence 3444455566677787777777777654332222233221 122222222 45666777777777433222222 34
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC--CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID--LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~--lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
+.+-..|+.+|...|++.+|-..+...- .+.. .-.......+|..++..|.+.+++..|..|++++-.+..+.++.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 5567889999999999999987765521 1111 12456778899999999999999999999999998887666666
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~e 202 (254)
...-..+...+.++....+..+-|..|++
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 65666777778877777643333444443
No 11
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.54 E-value=0.11 Score=42.68 Aligned_cols=111 Identities=11% Similarity=0.012 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
..+.....++.++...|++.+|.+.+... .+.. ..-+.......+...+++|+..|++..|..+.+++-.+.....+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 34567788999999999999998887652 1111 11134456889999999999999999999999999888776666
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+......+..+++++-...+|-+|...|.+....
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6666777788899999999998888877766553
No 12
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.43 E-value=0.37 Score=41.16 Aligned_cols=132 Identities=10% Similarity=-0.021 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhc
Q 025373 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLE 149 (254)
Q Consensus 71 ~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le 149 (254)
+..+.....++...... .-....+.....++.+|...|++.+|...+... .+.. ..-........|..++.+|+.
T Consensus 204 ~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR--QLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--hCcCchHHHHHHHHHHHHHHH
Confidence 33444444555443221 112344567788999999999999998888652 1111 111344568899999999999
Q ss_pred ccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 150 ~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.|++..|..+++++..+.....+.......+..++.++-...+|-+|...|.+....
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999888777777777778888999999999999988888876554
No 13
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.35 E-value=0.3 Score=42.41 Aligned_cols=113 Identities=11% Similarity=-0.049 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
...+.....|+.+|...|++.+|.+.+... ++.....-........|...+.+|+..|++..|..+++++-.+.....+
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQER-LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 345567788999999999999998887652 1111011133456678999999999999999999999999988877777
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.......+..+++++-...+|-+|...|.+....
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888999999999998888877766553
No 14
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.26 E-value=0.16 Score=44.19 Aligned_cols=133 Identities=10% Similarity=-0.047 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhh
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYL 148 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~L 148 (254)
.+........++....... .....+.....|+.+|...|++.+|.+.+... .+.. ..-+.......|...+.+|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV--ELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHH
Confidence 3444555555555433211 22234567788999999999999999888642 1111 11133456889999999999
Q ss_pred cccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 149 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 149 e~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..|++..|..+++++..+.....+.......+..+++++....+|-+|...|.+....
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999999999888776666667777888999999999998888777776554
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.25 E-value=0.38 Score=39.35 Aligned_cols=113 Identities=10% Similarity=-0.035 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
...+.....++.++...|++.+|.+.+...- +.....-........|...+.+|+..+++..|..+++++..+.....+
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 3446677889999999999999998876521 111111234556779999999999999999999999999988877777
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+..........++++-...+|-+|-..|.+....
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888889999999999999888888776543
No 16
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.23 E-value=0.29 Score=37.87 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccC--ChHHHHHHHHHHHHHh
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI--DDTFRLSKCVQIARLY 147 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~--s~~~K~~~~l~i~rL~ 147 (254)
.+........++....... -....+.....|+.+|...|++.+|...+... ++-. +.. +.......+..++.+|
T Consensus 42 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSG--DHTAEHRALHQVGMVERMAGNWDAARRCFLEE-RELL-ASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHH-HHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHH-HHcCccHHHHHHHHHHHHHHH
Confidence 4445555566665443322 23445677888999999999999998887641 1111 011 2235778899999999
Q ss_pred hcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 148 LEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 148 Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+..|++..|..++.++-.+.....++......+..++.++-...+|-+|-..|.+....
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999998887666677666777788899999999998888777766553
No 17
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.02 E-value=0.11 Score=36.88 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc-Ccc
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQ 172 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~-~~d 172 (254)
.+..-..++.++...|+|.+|...+... ..+. .-...|...+.+|+..+++..|..+++++..+... ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP--------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence 3445577899999999999999988752 1111 12468899999999999999999999999887754 234
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.......+..++.++-...+|-+|-..|......
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4444556677888888888998888888777664
No 18
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.72 E-value=0.025 Score=44.05 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk 180 (254)
.|..++...|++.+|...++.. .-.+.+....+..++++|.+.+|+..|..+++|+-.+-++ + ...+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a-------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~----~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGS-------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--D----PKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHH-------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHh-------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHH
Confidence 3677888899999998887761 1134456667888999999999999999999999877543 2 2345
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+.++....+|-+|-..|......
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 56788888888888888888877664
No 19
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.72 E-value=0.81 Score=38.75 Aligned_cols=180 Identities=15% Similarity=0.024 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHH---HHHHhcCC-ChHHHHHHHHHHHHhhcCcccchHHHH
Q 025373 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT---FAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQV 95 (254)
Q Consensus 20 ~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~---~~~~l~~l-~~~~~~~v~~~~L~~i~~~~is~Eeq~ 95 (254)
.+...+...+..++.+....++...+...-..-.....+.. +....... +.+........+|.......-.+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--QN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT--HH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH--HH
Confidence 34444555555666665555555544322111111111111 11112222 44455555566665443322222 24
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-C-CCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-L-DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-l-Et~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
+..-..++.+|...|+|.+|-..+...- + +.. .-.......+|..++..|...+++..|..+.+|+-.+..+.++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 6667889999999999999988876421 1 111 11223345799999999999999999999999998877555555
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
...-..+...+.++....+|-+|...|++-
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 555666777888888888887775655543
No 20
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.68 E-value=0.87 Score=38.81 Aligned_cols=112 Identities=9% Similarity=-0.047 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
...+.....++.+|...|++.+|-+.+...- +-....-........|..++.+|+..|++..|..+.+++-.+.....+
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 4456677889999999999999988876521 111011134456779999999999999999999999999988877777
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.......+..++.++-...+|-+|-..|.+...
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 777788888899999999999888777766544
No 21
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.65 E-value=0.096 Score=42.19 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCcc--CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS- 170 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~--~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~- 170 (254)
....+-..|+.+|...|++.+|...+...- +..... -++......|...+.+|...+++..|..+..++-.+....
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 456677889999999999999998886521 110000 1234678899999999999999999999999998876432
Q ss_pred -cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 171 -QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 171 -~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+.......+..++.++-...+|-+|-..|.+....
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222335667777888888888888887777766553
No 22
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.58 E-value=0.69 Score=37.02 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCC-C--CCCCccCChHHHHHHHHHHHHH
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID-L--DSGMRVIDDTFRLSKCVQIARL 146 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-l--Et~~~~~s~~~K~~~~l~i~rL 146 (254)
.+...+....++.........-..........|+.+|...|++.+|...+...- + ... .-+.......|...+++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL--GPDDPNVAKTKNNLASC 178 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 444555556666543211111123456778889999999999999998876521 1 000 01134567899999999
Q ss_pred hhcccchhhHHHHHhhhhhhc
Q 025373 147 YLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 147 ~Le~~D~~~Ae~~~nKas~~~ 167 (254)
|...+++..|..+.+++-.+.
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999998763
No 23
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.57 E-value=0.15 Score=37.29 Aligned_cols=103 Identities=14% Similarity=-0.027 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
...+..-..++..+...|+|.+|.+.+...- .+. +.......|...+..|+..+++..|..+++++..+..+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-----TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-- 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-----cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--
Confidence 3345566788999999999999999887632 111 23446889999999999999999999999999876432
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+ ...+..++.++-...+|-+|-..|......
T Consensus 98 ~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 D----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2 234456677777888888888888777664
No 24
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.54 E-value=0.5 Score=36.51 Aligned_cols=110 Identities=12% Similarity=-0.020 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc-ch
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QE 173 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~-d~ 173 (254)
.+.+...++.++...|++.+|...+... ++-....-.+......+..++.+|...||+..|..+.+++-.+..... ++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 4667788999999999999998877541 111100113456788999999999999999999999999998876555 44
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
......+...+.++-...+|-+|-..|.+...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 46667778888888888888888777766544
No 25
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.37 E-value=0.097 Score=43.08 Aligned_cols=112 Identities=14% Similarity=0.047 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccCCCCC-CCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC--
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDS-GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-- 170 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt-~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-- 170 (254)
.....-..|+.++...|++.+|...+...---. ....-+.......|...+.+|...+++..|..+..++-.+....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 455666789999999999999999887621100 00000345678899999999999999999999999998876433
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.+.......+..++.++-...+|-+|-..|.+...
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 34444567777888888888888887777766554
No 26
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.34 E-value=0.6 Score=34.79 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHH
Q 025373 16 QKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQV 95 (254)
Q Consensus 16 ~~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~ 95 (254)
.....|..+.......++.+.-..+++.++...-.-......+....... -..+........++.. .|. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~-~~~-------~ 75 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKT--GAVDRGTELLERSLAD-APD-------N 75 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH-CTT-------C
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHc--CCHHHHHHHHHHHHhc-CCC-------C
Confidence 34455555555555556665555555555433222222222222222222 2344445555555543 222 2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
..+...++.++...|++.+|.+.+...---.. .....|...++.|...+++..|..+.+++...... +
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~--- 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--E--- 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--c---
Confidence 34567789999999999999998875321111 12468899999999999999999999998776532 2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+..+++++-...+|-+|...|......
T Consensus 144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 144 -GKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 344567788888888888887777766553
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.15 E-value=1.5 Score=38.23 Aligned_cols=119 Identities=6% Similarity=-0.076 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 149 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le 149 (254)
.+...+....++...... .-....+.....|+.+|...|++.+|.+.+... ++-....-........+..++.+|+.
T Consensus 200 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHHHHHHHHHHHHHH
Confidence 444555555555543322 223445667888999999999999998887652 11010001213447889999999999
Q ss_pred ccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhh
Q 025373 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRK 192 (254)
Q Consensus 150 ~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rk 192 (254)
.|++..|..+.+|+-.+.....++.....|. ..+.++....+
T Consensus 277 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 318 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFE-FLKSLYLSGPD 318 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHTSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHhCCCc
Confidence 9999999999999998887666776665544 36666666654
No 28
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.00 E-value=1.2 Score=37.75 Aligned_cols=133 Identities=13% Similarity=0.039 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHh
Q 025373 69 EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLY 147 (254)
Q Consensus 69 ~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~ 147 (254)
+-+...+.....+..... .....+.......++.++...|++.+|-+.+.. +.+... ..+.......|..++.+|
T Consensus 90 ~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 90 RYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--GIDVYQNLYIENAIANIY 165 (293)
T ss_dssp CHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--SSCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 344445555555554322 333445556667799999999999999987643 222111 123334678999999999
Q ss_pred hcccchhhHHHHHhhhhhhcccC-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 148 LEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 148 Le~~D~~~Ae~~~nKas~~~~~~-~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
...+++..|..+.+|+-.+.... +++.+....+..++.++....+|-+|-..|.+.-.
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999998765432 34455556777889999999999888777766443
No 29
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=94.99 E-value=1.7 Score=38.02 Aligned_cols=109 Identities=8% Similarity=0.045 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 149 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le 149 (254)
.+...+....+++.... ..-....+.....|+.+|...|++.+|.+.+... ++-....-++.. ...+..+++.|..
T Consensus 198 ~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~-~~~~~~la~~~~~ 273 (378)
T 3q15_A 198 YDKALPHLEAALELAMD--IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLL-PKVLFGLSWTLCK 273 (378)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhH-HHHHHHHHHHHHH
Confidence 34445555555554321 1223356778889999999999999999887652 111100122333 8899999999999
Q ss_pred ccchhhHHHHHhhhhhhcccCcchhHHHHHHHH
Q 025373 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVC 182 (254)
Q Consensus 150 ~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~ 182 (254)
.|++..|..+.+|+-.+.....++.....+..+
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999988776676666665443
No 30
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.98 E-value=0.3 Score=34.34 Aligned_cols=101 Identities=11% Similarity=0.013 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 92 Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
.......-..++.++...|+|.+|...+... ..+.. -...|...+.+|...+++..|..+.+++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-
Confidence 3455666778999999999999999988753 11111 2568999999999999999999999999876433
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+ ...+..++.++-...+|-+|...|......
T Consensus 79 -~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 79 -Y----SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2 234566778888888888888888777664
No 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.92 E-value=0.15 Score=36.43 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
--..++.++...|+|.+|...+... .++. .....|...+.+|...+++..|..+++++..+... +
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~---- 83 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP--------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--F---- 83 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--C----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--c----
Confidence 3456899999999999999988762 2221 12578999999999999999999999999876543 2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+..++.++-...+|-+|-..|......
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 234556777888888888888877776554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.73 E-value=1.8 Score=37.21 Aligned_cols=95 Identities=14% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
..+...++.++...|++.+|.+.+.. | .-.+.+...+++|+..|++..|..+++++..+-.+ ..
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-~-----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----~~ 164 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-G-----------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED----AT 164 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-C-----------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-C-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----cH
Confidence 34578899999999999999999988 1 22458888999999999999999999998776422 12
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+-..++.++....+|=+|-..|.++...
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 2233333445544556677777666666553
No 33
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=94.65 E-value=0.42 Score=40.54 Aligned_cols=100 Identities=11% Similarity=-0.033 Sum_probs=74.9
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHH--HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR--LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K--~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
.+..+-..|++.+|.+.+..+--... ..++.+ +.+|..+...|+..+++..|..+.+++-.+.....+....+..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEE---YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcccc---CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 46677888999999999877433221 123333 6666679999999999999999999999877666666666777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 180 KVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~els 204 (254)
+...+.++....+|-+|-..|...-
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888888888877766666654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.64 E-value=1.3 Score=35.06 Aligned_cols=179 Identities=12% Similarity=-0.029 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHH
Q 025373 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (254)
Q Consensus 17 ~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a 96 (254)
..+.|..+-......++.+.-..+.+..+... .-......+........ ..+..++....++..-....-. .....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~-~~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRAD-YKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCC-HHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccc-hHHHH
Confidence 45667777777777777755555555544332 22222222222222222 3444555555555533211111 12336
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCC-CCCCccC-------------------ChHHHHHHHHHHHHHhhcccchhhH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDL-DSGMRVI-------------------DDTFRLSKCVQIARLYLEDDDAVNA 156 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~l-Et~~~~~-------------------s~~~K~~~~l~i~rL~Le~~D~~~A 156 (254)
.+...|+.+|...|+|.+|.+.+...-- ... ... ........|...+.+|+..+++..|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 6778899999999999999888765211 110 000 1234567899999999999999999
Q ss_pred HHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 157 EAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 157 e~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+++++-.+... + ...+..++.++-...+|-+|-..|......
T Consensus 159 ~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 159 VKAYTEMIKRAPE--D----ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999876543 2 245566788888888888888877776554
No 35
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.46 E-value=0.56 Score=35.31 Aligned_cols=103 Identities=14% Similarity=0.030 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 90 s~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
++..+.+..-..+...|-..|+|.+|.+.+.. |.++.. -...|...+..|+..|++..|..+++|+-.+-.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence 44455566667789999999999999998865 333332 256899999999999999999999999987643
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 169 SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 169 ~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+ + ...+...+.++-...+|-+|-..|......
T Consensus 79 ~--~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 79 K--F----IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp T--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred h--h----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3 2 234556788888899999999988887765
No 36
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.44 E-value=0.46 Score=32.81 Aligned_cols=97 Identities=16% Similarity=-0.071 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
..-..++..+...|+|.+|.+.+...--. .+ .-...|...+.+|+..+++..|..+.+++...... +
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~---- 71 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL------DP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--W---- 71 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH------CC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--c----
Confidence 44567899999999999999988763111 11 12568999999999999999999999999876543 2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+...+.++-...+|-+|-..|......
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 234456677777788888888877776654
No 37
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.29 E-value=0.51 Score=36.21 Aligned_cols=100 Identities=9% Similarity=-0.069 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
+.+..-..++.++...|+|.+|.+.+... .++.. -...|...+.+|+..+++..|..+++++-.+-.+ +
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~ 78 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--Y 78 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C
Confidence 34556678999999999999999888652 22211 2568999999999999999999999999877543 2
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
...+..++.++-...+|-+|-..|.......
T Consensus 79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 79 ----SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3445567888888999999988888877653
No 38
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.12 E-value=1 Score=32.67 Aligned_cols=98 Identities=12% Similarity=-0.046 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
+..-..++..+...|+|.+|...+.. |.++.. -...|...+..|+..+++..|..+.+|+-.+-++ +
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~-- 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--F-- 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--c--
Confidence 34456788999999999999998865 222221 1478999999999999999999999999877543 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
...+...+.++-...+|-+|-..|.......
T Consensus 72 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 --VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2345567888888899989888888776653
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=94.11 E-value=0.08 Score=41.11 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
...+.......||.+|...|+|.+|.+.+.. |.++.. -.+.|...+.+|...+++..|..+.+++..+-++
T Consensus 26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97 (150)
T ss_dssp SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 3445555567899999999999999998875 233222 2568999999999999999999999999877543
Q ss_pred CcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 025373 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 170 ~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~e 202 (254)
+.+ .+...+.++-...+|-+++..|.+
T Consensus 98 --~~~----~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 98 --QKD----LVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp --CHH----HHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred --CHH----HHHHHHHHHHHcCChHHHHHHHHH
Confidence 332 234567777777777788887754
No 40
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.09 E-value=0.35 Score=34.81 Aligned_cols=100 Identities=10% Similarity=-0.057 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
..+|..+...|+|.+|...+..+--... +.....+.+...+.+|+..+|+..|..+.+++.....+... ....
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~ 78 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGG 78 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHH
Confidence 4678899999999999998876421111 11234578899999999999999999999999877654211 1223
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
....+.++-...+|-+|-..|..+...
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345677777788888888888777664
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.06 E-value=1.9 Score=34.53 Aligned_cols=167 Identities=17% Similarity=0.116 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Q 025373 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 97 (254)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~ 97 (254)
+..|..+-......++.+.-..+++..+...-........+..+..... ..+...+....++..- |. ...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~-~~-------~~~ 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM--EPKLADEEYRKALASD-SR-------NAR 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHC-TT-------CHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHC-cC-------cHH
Confidence 4555555555555666544444444443222222222222322222222 3444555555555532 22 245
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
+...++.+|...|++.+|.+.+...-- .. ........|...+.+|+..+++..|..+++++...... + .
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~----~ 175 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ-DT----LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--Q----P 175 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT-CT----TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----H
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh-Cc----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--c----H
Confidence 667899999999999999998876432 11 11234678899999999999999999999998776533 2 3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 178 ~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..+..++.++-...+|-+|-..|.....
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888888888888877777655
No 42
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.03 E-value=0.76 Score=40.12 Aligned_cols=131 Identities=10% Similarity=-0.035 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcc
Q 025373 72 TQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLED 150 (254)
Q Consensus 72 ~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~ 150 (254)
........++...... -.+....+..-..|+.+|...|+|.+|.+.+.. +.+.. ..-........|..++.+|...
T Consensus 161 ~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE--AEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHHC
Confidence 3444444455443322 123556677888999999999999999887754 11111 1112445677999999999999
Q ss_pred cchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 151 DDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 151 ~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
|++..|..+.+++-.+.....+..-...-+...+.++-...+|-+|-..|.+...
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988766666233366677888998888888777776665544
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.99 E-value=1.1 Score=33.34 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......++.++...|++.+|.+.+...- ... .-...|...+.+|...+++..|..+.+++...... +
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~-- 109 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAP--------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI--N-- 109 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C--
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--h--
Confidence 3444555555555555555555554311 100 01234555555555555555555555555444321 1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
......+++++-...+|-+|-..|.+...
T Consensus 110 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 110 --FNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 12334445555555555555555554433
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.97 E-value=1 Score=35.63 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~ 173 (254)
+..-..++.++...|+|.+|.+.+... .++ .....|...+..|...+++..|..+++++-.+.... .+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 445567899999999999999887652 111 224688999999999999999999999988876543 244
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
......+...+.++-...+|-+|-..|......
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444677778888888888988888877776653
No 45
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.094 Score=46.15 Aligned_cols=110 Identities=8% Similarity=0.048 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
...++..+..++...|++.+|-+++...- +..........+..++.+.+.+|++.|++..|..+++++-.......|..
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSI-EFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 34567777888888888887776654311 11100111223678999999999999999999999999988888778888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.++.++..++|++-..++|-.|-..|.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 8999999999999999999888777766544
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.87 E-value=0.57 Score=40.30 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCC--CCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~l--Et~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
..+.....++.+|...|+|.+|...+.. +.+ +.+ ....-...|..++.+|.. +|+..|..+.+|+-.+....
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g----~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG----TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 4455667778888888888777776643 111 111 223446778888888888 88888888888888877665
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.+.......+.-++.++-...+|-+|-..|...-.
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555556666777788778888777777766544
No 47
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.85 E-value=0.5 Score=40.65 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
..+.....|+.+|+. |++.+|...+.. +.+-.. .-........|..++.+|...+++..|..+.+++..+..+..+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 345667789999999 999999877653 111110 0122345789999999999999999999999999988766544
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
......+....+.++-...++-+|-..|.+..
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44444566667777777788888877777765
No 48
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=93.80 E-value=0.59 Score=35.99 Aligned_cols=96 Identities=15% Similarity=0.173 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHH-hhcccch--hhHHHHHhhhhhhcccCcc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARL-YLEDDDA--VNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL-~Le~~D~--~~Ae~~~nKas~~~~~~~d 172 (254)
.....++.+|...|+|.+|...+... .++.. -...|...+.+ |+..+++ ..|..+++++..+... +
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--~ 114 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--E 114 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--c
Confidence 45678999999999999999887652 22211 24588889998 8899998 9999999999877543 2
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+...++++-...+|-+|-..|......
T Consensus 115 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 115 ----ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 233456788888888888888888877664
No 49
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.55 E-value=0.59 Score=35.08 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC-cch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~-~d~ 173 (254)
+.--..|...+-..|+|.+|...... |.++.. -...|..++..|+..+++..|..+++|+-.+..+. .+.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~--------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 79 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS--------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADY 79 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhh
Confidence 44456788999999999999988764 333322 25689999999999999999999999998876542 233
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
...-.-+..++.++....+|-+|-..|..-
T Consensus 80 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 80 KLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333445677777788887777766653
No 50
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.55 E-value=0.56 Score=34.87 Aligned_cols=98 Identities=15% Similarity=0.004 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
.+..-..++..+...|+|.+|...+... ..+. .....|..++.+|+..+++..|..+.+++..+... +
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~- 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP--------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--Y- 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--c-
Confidence 3444566778888888888887776542 1111 12567778888888888888888888887766432 1
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+..++.++-...+|-+|-..|......
T Consensus 81 ---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 81 ---IKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 223445666677777777777777666553
No 51
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=93.54 E-value=0.19 Score=45.92 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc--CcchhHH
Q 025373 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS--SQQEVLN 176 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~--~~d~~Lk 176 (254)
...||.+++.+|++.+|-++|... ++.+. ....++.++..+++||..|.+..|...+++....-.+ ..+..+.
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~-i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l 177 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEG-IDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHH
Confidence 368999999999999999999873 23221 1368999999999999999999999999987655321 1134444
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+..-..++-+.....++-+|-.-|.|++..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 444445556665555888888888888775
No 52
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.51 E-value=3.6 Score=37.45 Aligned_cols=104 Identities=11% Similarity=-0.005 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.....++.+|...|++.+|.+.+...---......+++.-...|...+..|...|++..|..+.+++..+-.+ +.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~--- 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DA--- 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch---
Confidence 3456789999999999999998876311000001123334789999999999999999999999999776532 22
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+..++.++-...++-+|...|.+....
T Consensus 551 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 -NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45667788888888998888888887765
No 53
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.50 E-value=0.9 Score=31.49 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
...-..++.++...|+|.+|.+.+...--... .....|...+.+|...+++..|..+.+++..+... +.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA-- 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cH--
Confidence 34456789999999999999998876321111 12468899999999999999999999999776432 22
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.....++.++-...+|-+|-..|.+....
T Consensus 78 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 --EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 23445677777778888887777766554
No 54
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.23 E-value=0.62 Score=36.89 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCcc-----C---ChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRV-----I---DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~-----~---s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
+..-..++..+...|+|.+|.+.+... .+...... . ....+..+|..++.+|+..+++..|..+++++-.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344566899999999999999877642 22111100 0 11224689999999999999999999999999877
Q ss_pred cccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 167 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 167 ~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
... + ...+...+.++-...+|-+|-..|......
T Consensus 118 ~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKN--N----VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Ccc--c----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 432 2 234456677788888888888877776654
No 55
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.18 E-value=0.37 Score=33.60 Aligned_cols=70 Identities=6% Similarity=0.002 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
.....++.++...|+|.+|.+.+... .++.. -...|...+.+|+..+++..|..+++++-.+..+..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 34467899999999999999877652 22221 146899999999999999999999999988766543333
No 56
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.09 E-value=0.54 Score=41.21 Aligned_cols=131 Identities=13% Similarity=-0.018 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcc
Q 025373 72 TQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLED 150 (254)
Q Consensus 72 ~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~ 150 (254)
..+.....++..... +.-+...+..-..|+.+|-..|++.+|...+.. +.+-..... ........+..++..|...
T Consensus 119 ~A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 119 EAIGYYREAEKELPF--VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL-YSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp HHHHHHHHHHTTGGG--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence 334444444443322 223456778888999999999999998876653 111111000 1235678899999999999
Q ss_pred cchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 151 DDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 151 ~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+++..|..+.+++-.+.....++......+..++.++-...+|-+|-..|.+...
T Consensus 196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988876677777777788888888888888777777766544
No 57
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.06 E-value=0.18 Score=34.74 Aligned_cols=95 Identities=12% Similarity=-0.001 Sum_probs=71.4
Q ss_pred HHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
..++.++...|+|.+|...+... .++.. ....|...+.+|...+++..|..+.+++...... .....
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~ 77 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKD 77 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHH
Confidence 45788999999999999887652 22111 2457899999999999999999999999876543 11233
Q ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHhh
Q 025373 179 YKVCYARILDLK-RKFLEAALRYYDISQI 206 (254)
Q Consensus 179 yk~~~ari~d~~-rkFLeAa~rY~els~~ 206 (254)
.+...+.++-.. .+|-+|-..|..+...
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 456678888888 8888888888777665
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.04 E-value=2.5 Score=33.66 Aligned_cols=101 Identities=10% Similarity=0.012 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc-hhHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLN 176 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d-~~Lk 176 (254)
....++.++...|++.+|.+.+...- ...+ .-...|...+.+|...+|+..|..+++++..+..+... ....
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al------~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAI------KKNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------HTTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHH------HhCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 44458999999999999988776521 1111 14568899999999999999999999999877653211 1122
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
...+...+.++....+|-+|-..|.....
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 34566778888888888888888777655
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=92.81 E-value=2.8 Score=32.93 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......++.++...|++.+|.+.+...- ... .....|...+.+|+..+++..|..+.+++..+... +
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~-- 158 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--D-- 158 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--C--
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--c--
Confidence 3455667888888888888877765421 111 01346777788888888888888888877665432 1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
......++.++-...+|-+|-..|.+...
T Consensus 159 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 159 --TEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp --HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12344556666666666666665555544
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=92.72 E-value=4.2 Score=36.30 Aligned_cols=101 Identities=15% Similarity=0.045 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
....++.++...|++.+|.+.+...---.. .....|...+.+|...|++..|..+.+++-.+..+..+....+
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFP-------TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 445677888888888888777754211000 1124666778888888888888888888776665433333344
Q ss_pred HHHHHHHHHHhhh----------hhHHHHHHHHHHHHh
Q 025373 178 QYKVCYARILDLK----------RKFLEAALRYYDISQ 205 (254)
Q Consensus 178 ~yk~~~ari~d~~----------rkFLeAa~rY~els~ 205 (254)
......+.++... .+|-+|-..|.....
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 4444556666665 666666666665544
No 61
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.71 E-value=1.3 Score=35.05 Aligned_cols=118 Identities=11% Similarity=0.022 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcCccc-----chHHHHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhh
Q 025373 75 EIANYTLAQIQPRVV-----SFEEQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYL 148 (254)
Q Consensus 75 ~v~~~~L~~i~~~~i-----s~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~L 148 (254)
+|...+.+.++.|.. ............++..+...|++.+|...+... .++. .-...|...+..|.
T Consensus 10 ~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--------~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--------YNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHH
Confidence 344444444444433 444566667788999999999999999988752 1111 12458999999999
Q ss_pred cccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 149 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 149 e~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+++..|..+..|+-.+.++ ++. .+..++.++-...+|-+|-..|...-..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~--~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKN--DYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSS--CCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCC--CcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999888764 222 3445677888888998888888877664
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.70 E-value=0.6 Score=36.00 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+.+-..|+.+|...|+|.+|.+.+.. |.++.. -.+.|...+.+|...+++..|..+..++.....
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 34455677777777888777777654 222221 245677777777777777777777777655543
No 63
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.67 E-value=5.3 Score=38.04 Aligned_cols=135 Identities=9% Similarity=-0.014 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHHH
Q 025373 68 LEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQIA 144 (254)
Q Consensus 68 l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~---I~lEt~~~~~s~~~K~~~~l~i~ 144 (254)
-..+....+.+.+|..-..---.--..++.....||.+|...|+|.+|...... |-....+ . ..-.-+..+..++
T Consensus 323 g~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~-~Hp~~a~~l~nLa 400 (490)
T 3n71_A 323 GLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-H-NNAQLGMAVMRAG 400 (490)
T ss_dssp TCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-T-TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHH
Confidence 345556777777777543322223345888899999999999999999886653 2222221 1 1123567899999
Q ss_pred HHhhcccchhhHHHHHhhhhhhcc---cCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 145 RLYLEDDDAVNAEAFINKASFLVS---SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 145 rL~Le~~D~~~Ae~~~nKas~~~~---~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.+|...|++..|+.+..||-.+.. ..+.+.+.-.. ...+....-.++|=+|-.-|+..-.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~-~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE-AMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988774 34444332221 3444444556667777666666533
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.67 E-value=0.72 Score=37.99 Aligned_cols=106 Identities=8% Similarity=0.004 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
..+.....+|..+-..|+|.+|...+..+--... ......+.+...+.+|+..+|+..|..+.+++..+.++..+.
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR----THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC----CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3455667889999999999999999987532221 112457789999999999999999999999998887643221
Q ss_pred hHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHhh
Q 025373 174 VLNLQYKVCYARILDL--------KRKFLEAALRYYDISQI 206 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~--------~rkFLeAa~rY~els~~ 206 (254)
....| ..+.++-. ..+|-+|-..|..+...
T Consensus 89 -~~a~~--~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 89 -PQAEY--ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp -HHHHH--HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHH--HHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 12223 34555555 77888888888877654
No 65
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.65 E-value=1.1 Score=31.21 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.....++.++...|++.+|.+.+...--- . + .-...|...+.+|...+++..|..+.+++...... +.
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-----~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~--- 103 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-----P-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA--- 103 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-----T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-----C-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch---
Confidence 34566899999999999999888763211 1 0 11457888999999999999999999998776532 22
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.....+++++-...+|-+|-..|.+...
T Consensus 104 -~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 104 -EAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp -HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 2334567777777888777777766544
No 66
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.62 E-value=0.86 Score=31.78 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
-..++.++...|++.+|.+.+...--... .-...|...+.+|...+++..|..+.+++...... + ..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~ 70 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--S----AE 70 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--c----hH
Confidence 35688999999999999998876421111 12457888999999999999999999998766432 2 22
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.....+.++-...+|-+|-..|.+....
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445677787788888877777766553
No 67
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.52 E-value=1.1 Score=33.11 Aligned_cols=98 Identities=10% Similarity=-0.036 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...++.++...|+|.+|.+.+... .+.. .-...|...+.+|...+++..|..+++++-.+... +..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~ 116 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKD 116 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHH
Confidence 445677899999999999999887642 2211 12468999999999999999999999999877543 333
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
....+ ..+..+-...+|-+|-..|.....
T Consensus 117 ~~~~~--~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 117 AKMKY--QECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHcccchHH
Confidence 33223 333334456777777666665433
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.48 E-value=3.4 Score=32.95 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
.......++.++...|++.+|.+.+...- ... .-...|...+.+|...+++..|..+++++...... +.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~ 209 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--------NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ--NA 209 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC--CH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cH
Confidence 45567789999999999999999887631 111 12568899999999999999999999998765432 22
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
......++++....++-+|...|..+...
T Consensus 210 ----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 210 ----RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23456777777788888887777776554
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.42 E-value=1.1 Score=35.19 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc---
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ--- 171 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~--- 171 (254)
......++.+|...|+|.+|.+.+.. +.++. .-...|...+.+|+..+++..|..+.+++..+..+..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 108 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDK--------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH
Confidence 35678899999999999999887764 22221 1246889999999999999999999999988665422
Q ss_pred -------chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 -------QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 -------d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...-....+...+.++-...+|-+|-..|......
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 11112344556778888888998888888777664
No 70
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.41 E-value=0.72 Score=34.73 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
.........+|..+...|+|.+|...+...- .+. .-...|...+.+|...+++..|..+.+|+..+-++
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 84 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-- 84 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--
Confidence 3445556778999999999999999887521 111 12468899999999999999999999999887543
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++. .+..++.++....+|-+|-..|......
T Consensus 85 ~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 85 EPR----FPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332 3445678888888998888888777654
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.35 E-value=1.2 Score=34.92 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=72.5
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
..++..+...|+|.+|...+... ++. ....|...+..|+..+|+..|..+.+++-.+... + ...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~ 73 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-QDP---------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--L----AVA 73 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-SSC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-cCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--c----hHH
Confidence 56789999999999999999886 222 2468999999999999999999999999877533 2 234
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+...+.++-..++|-+|-..|......
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 556778888888898888888776653
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.34 E-value=0.74 Score=39.25 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcc-cchhhHHHHHhhhhhhcccCc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~-~D~~~Ae~~~nKas~~~~~~~ 171 (254)
..+.....++.+|...|++.+|...+.. +.+.... -....-...|..++.+|... +++..|..+.+|+-.+.....
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 3456667899999999999999876642 1221111 12233467899999999997 999999999999998887655
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++......+.-.+.++-...+|-+|-..|...-..
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 54444455667788888889999998888877664
No 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.05 E-value=0.63 Score=39.69 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
+..+.+|...|+|.+|...+... .+... .=++..-...|..++.+|...|++..|..+.+|+..+.....+......
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKK--AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33467888899999988776531 11100 0023345789999999999999999999999999998877666665566
Q ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHh
Q 025373 179 YKVCYARILDLK-RKFLEAALRYYDISQ 205 (254)
Q Consensus 179 yk~~~ari~d~~-rkFLeAa~rY~els~ 205 (254)
.+.-.+.++... .+|-+|-..|.+--.
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 677788888886 888888777766544
No 74
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.03 E-value=0.44 Score=42.12 Aligned_cols=107 Identities=16% Similarity=0.054 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCCh-------HHHHHHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDD-------TFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~-------~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
..+.....++.+|...|+|.+|...+.. |.+.......+. ..+...|...+.+|+..+++..|..+++|+-.
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566778899999999999999887653 222222111111 22478999999999999999999999999988
Q ss_pred hcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 166 ~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+-.+ + ...+...+.++-...+|-+|-..|......
T Consensus 225 ~~p~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LDSN--N----EKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCC--c----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7543 2 234456677888888998888888877664
No 75
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.97 E-value=4.4 Score=33.19 Aligned_cols=100 Identities=10% Similarity=-0.039 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch---h
Q 025373 99 REKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE---V 174 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~---~ 174 (254)
...++.+|...|++.+|.+.+... .+.. .....|...+.+|...+++..|..+++++..+.....++ .
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIAP--------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 445899999999999999888763 1111 124688899999999999999999999998876443221 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
-....+..++.++-...+|-+|-..|......
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 22345667788888888888888777776554
No 76
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=91.96 E-value=0.7 Score=35.38 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...++.+|...|+|.+|...+.. +.++.. -...|...+.+|...+++..|..+++++-.+..+..+..
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 45667899999999999999887764 222221 256899999999999999999999999988876544433
Q ss_pred HHHHHHHHHHHHH
Q 025373 175 LNLQYKVCYARIL 187 (254)
Q Consensus 175 LkL~yk~~~ari~ 187 (254)
++..+..+..++-
T Consensus 117 ~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 117 MKRGLETTKRKIE 129 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 77
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.87 E-value=0.62 Score=32.78 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
..+...++.+|...|+|.+|...+... .+... ..-........|...+..|...+++..|..+.+++-.+..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 345678899999999999999887652 11110 0112223478999999999999999999999999987643
No 78
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.56 E-value=1.4 Score=31.94 Aligned_cols=99 Identities=13% Similarity=-0.006 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
+..-..++..+...|+|.+|...+.. +.++.. -...|...+.+|+..+++..|..+++++..+..+ +
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~-- 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--S-- 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--h--
Confidence 44556789999999999999988765 222221 2468999999999999999999999999887543 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~ 208 (254)
...+..++.++-...+|-+|-..|.......+
T Consensus 77 --~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 77 --VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 33556677888888888888888877766533
No 79
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.37 E-value=3.6 Score=31.17 Aligned_cols=105 Identities=10% Similarity=-0.028 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCC-------CCCCcc---CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDL-------DSGMRV---IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~l-------Et~~~~---~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas 164 (254)
+..-..++..+-..|+|.+|...+.. |.+ ++.... -.+.....+|...+..|+..+++..|..+++++-
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 33445678888888999888876543 111 000000 0034467899999999999999999999999998
Q ss_pred hhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 165 ~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+-+. + ...+...+.++-...+|-+|-..|......
T Consensus 91 ~~~p~--~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET--N----EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc--c----hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 77433 2 234455677888888999998888877664
No 80
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.28 E-value=6.9 Score=34.03 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCcc----CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRV----IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~----~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
......++.+|...|++.+|.+.+...- +...... +..-.++..++..+..|...+++..|..+++++..+..
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-- 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-- 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--
Confidence 3456788999999999999998887642 1111000 00111334456669999999999999999999987654
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+++......+.+++.++-...+|-+|-..|.+....
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 366666778889999999999999988888876553
No 81
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.19 E-value=0.76 Score=32.98 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
......|+.+|...|+|.+|...+... .++. .-...|...+.+|...|++..|..++.++..+....
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 346678999999999999999887652 2221 124578899999999999999999999998776543
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=91.15 E-value=6.6 Score=33.61 Aligned_cols=131 Identities=12% Similarity=-0.036 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccC-CC--CCCCccCChHHHHHHHHHHHHH
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGI-DL--DSGMRVIDDTFRLSKCVQIARL 146 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~l--Et~~~~~s~~~K~~~~l~i~rL 146 (254)
.+........++..-..... -...+.....++.++...|++.+|...+... .+ +.++ . ........+...+.+
T Consensus 69 ~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~-~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 69 LTRSLALMQQTEQMARQHDV--WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL-E-QLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-T-TSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-c-cCcHHHHHHHHHHHH
Confidence 34445555555554322111 1233566778999999999999998877541 00 1110 0 012345677788999
Q ss_pred hhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 147 YLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 147 ~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
|.+.||+..|+.+.+++-.+.....++. ....+...++++-...+|-+|-..|.+...
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988876655544 456667889999999999887777766544
No 83
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.12 E-value=1 Score=33.48 Aligned_cols=93 Identities=11% Similarity=-0.067 Sum_probs=70.4
Q ss_pred HHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
..++..+...|+|.+|...+... ..+. .-.+.|...+.+|...|++..|..++.|+-.+-++ +. .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~----~ 86 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP--------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DI----A 86 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----H
Confidence 45788899999999999888652 1111 12568899999999999999999999999887654 22 2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+...+.++....+|-+|-..|...-..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456777888888888888888776553
No 84
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=90.94 E-value=3.7 Score=33.14 Aligned_cols=94 Identities=24% Similarity=0.073 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......|+.++...|++.+|...+.. +.++ .-.+.|...+.+|+..|++..|..+.+++-.+-++ +.+
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~--~~~ 186 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK--DLD 186 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChH
Confidence 34556788899999999999887765 1222 12457888899999999999999999998776543 222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
.+...+.++....+|-+|...|..+-
T Consensus 187 ----~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 187 ----LRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ----HHHHHHHHHTC---------------
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 23455777777777777766665543
No 85
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.91 E-value=4.8 Score=31.54 Aligned_cols=115 Identities=10% Similarity=-0.119 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhh
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYL 148 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~L 148 (254)
.+...+....++..- |. ...+...++.++...|++.+|.+.+...- ... .....|...+.+|+
T Consensus 107 ~~~A~~~~~~~~~~~-~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-ME-------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--------NDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHHHT-CC-------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHH
Confidence 344455555555532 22 13456789999999999999999887631 111 12458899999999
Q ss_pred cccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 149 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 149 e~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+++..|..+++++.....+ + ...+..+++++-...+|-+|-..|......
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPG--H----ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999998776532 2 234566777887888888887777777664
No 86
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=90.72 E-value=4.6 Score=31.03 Aligned_cols=168 Identities=11% Similarity=0.000 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Q 025373 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 97 (254)
Q Consensus 18 ~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~ 97 (254)
+..|..+.......++.+.-..+++..+...-.-......+........ ..+...+....++.. .|. ...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~-~~~-------~~~ 77 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK--VNDKAQESFRQALSI-KPD-------SAE 77 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH-CTT-------CHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC--ChHHHHHHHHHHHHh-CCC-------ChH
Confidence 4455555555556666655444444443222111122222222222222 234445555555543 222 234
Q ss_pred HHHHHHHHHHhh-ccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 98 IREKLADLYESE-QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 98 lr~~LA~i~E~~-~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
....++.++... |++.+|.+.+...-- .. ........|...+.+|...+++..|..+.+++...... +
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~---- 146 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-DP----TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--F---- 146 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST----TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C----
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----
Confidence 557789999999 999999988876432 11 01124568889999999999999999999998765433 2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+..++.++-...+|-+|-..|......
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234556778888888888888777776554
No 87
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.37 E-value=1.1 Score=34.51 Aligned_cols=100 Identities=11% Similarity=-0.032 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
.........++..+...|+|.+|...+... .++.. -...|...+..|...+++..|..+.+|+..+-.+
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-- 87 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-- 87 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--
Confidence 334455677899999999999999888752 12211 2467888999999999999999999999877543
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++. .+..++.++....+|-+|-..|......
T Consensus 88 ~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPR----FPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cch----HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 322 2345688888888998888888776554
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=90.23 E-value=7.8 Score=32.87 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...|+.+|...|++.+|.+.+... .+.. .-...|...+.+|...+++..|..+.+++-.+..+ +
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~-- 280 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--F-- 280 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c--
Confidence 345567889999999999998887652 1111 12458889999999999999999999998776433 1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~ 208 (254)
...+...+.++-...+|-+|-..|.......+
T Consensus 281 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 281 --IRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp --HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 33455678888888899888888888766543
No 89
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.02 E-value=3.4 Score=37.20 Aligned_cols=105 Identities=14% Similarity=0.014 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCC-CCC--------CccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDL-DSG--------MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~l-Et~--------~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
+.....+|..+...|+|.+|.+.+...-- ... ...-.+......|...+.+|+..+++..|..+++++-.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44456789999999999999887754110 000 000023457889999999999999999999999999876
Q ss_pred cccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 167 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 167 ~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
-.+ + ...+...+.++-...+|-+|-..|......
T Consensus 303 ~p~--~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 DPS--N----TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cch--h----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 432 2 223345667777788888888877776664
No 90
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.81 E-value=1.4 Score=30.76 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
......++.++...|++.+|.+.+...- .+.. -...|...+.+|...+++..|..+++++..+..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 3456788999999999999998886521 1111 146889999999999999999999999987754
No 91
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=89.79 E-value=11 Score=34.11 Aligned_cols=103 Identities=10% Similarity=-0.101 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc-CcchhH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVL 175 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~-~~d~~L 175 (254)
.....|+.+|...|++.+|.+.+..+- +... .....|...+.+|...|++..|..+++++..+..+ ..+++.
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSY-ALFQ------YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 345568888999999999988887642 1110 02357889999999999999999999998777543 223343
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
....+.+++.++-...+|-+|-..|......
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3566778888888889998888888777654
No 92
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=89.63 E-value=8.4 Score=32.35 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...|+.+|...|++.+|...+... .+.. .-...|...+.+|...|++..|..+.+++..+... +
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~-- 284 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--Y-- 284 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c--
Confidence 456677899999999999999887652 1111 11458889999999999999999999998776432 1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
...+...+.++-...+|-+|-..|.......
T Consensus 285 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 285 --IRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2445678888888899999888888776653
No 93
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=89.60 E-value=1.7 Score=34.98 Aligned_cols=63 Identities=11% Similarity=-0.069 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
......++.+|...|+|.+|.+.+... .++. .-...|...+.+|...+++..|..+++++..+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRP--------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344445555555555555555444331 1110 01234455555555555555555555555443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.60 E-value=7.4 Score=31.70 Aligned_cols=106 Identities=15% Similarity=0.007 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhc--------ccchhhHHHHHhhhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLE--------DDDAVNAEAFINKASFL 166 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le--------~~D~~~Ae~~~nKas~~ 166 (254)
......|+.+|...|+|.+|...+..+- .... ...-...+...+..|+. .+++..|..+.+++...
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4566789999999999999999887631 1111 11334678889999999 99999999999999888
Q ss_pred cccCcchhHHHHH-----------HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 167 VSSSQQEVLNLQY-----------KVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 167 ~~~~~d~~LkL~y-----------k~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.++......-+.+ ....++++-...+|-+|-..|..+...
T Consensus 127 ~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 127 YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7653222111100 145688888999999999999888664
No 95
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.51 E-value=1.2 Score=41.91 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccC---CCCCCCcc
Q 025373 54 SRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGI---DLDSGMRV 130 (254)
Q Consensus 54 sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I---~lEt~~~~ 130 (254)
+++.+..+-..=...+.+....+.+.+|..-..---.--..++.....||.+|...|+|.+|....... -...+ |.
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~ 376 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-PV 376 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc-CC
Confidence 445555544332222445567777777775443222333457888899999999999999998876541 11112 11
Q ss_pred CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc---cCcchhHH
Q 025373 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS---SSQQEVLN 176 (254)
Q Consensus 131 ~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~---~~~d~~Lk 176 (254)
..-.-...|-+++.+|...|++..|+.+..||-.+.. ..+.+.++
T Consensus 377 -~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 377 -YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp -SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred -CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 1223567888999999999999999999999988774 34555443
No 96
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=89.51 E-value=5.9 Score=30.41 Aligned_cols=116 Identities=16% Similarity=0.027 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 149 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le 149 (254)
.+........++. .+. ......+...++.++...|++.+|...+...- +.. + .....|...+.+|+.
T Consensus 93 ~~~A~~~~~~~~~--~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-----~-~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 93 PAESMAYFDKALA--DPT----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSL-AAQ-----P-QFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHHHHHT--STT----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-----T-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-----C-CCchHHHHHHHHHHH
Confidence 3444555555554 111 11234566889999999999999999887531 111 1 125688999999999
Q ss_pred ccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 150 ~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
.|++..|..+++++...... .+.. .....+.++...+++ +++..|.+..
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~-~~a~~~~~~~ 208 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEV-LQAD----DLLLGWKIAKALGNA-QAAYEYEAQL 208 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCS-CCHH----HHHHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CCHH----HHHHHHHHHHhcCcH-HHHHHHHHHH
Confidence 99999999999998776541 1222 123445555555554 4555555443
No 97
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.47 E-value=7.7 Score=31.71 Aligned_cols=105 Identities=9% Similarity=-0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCC-CCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDS-GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt-~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
..+...++.++...|+|.+|...+...- ... .+...........|...+.+|...+++..|..+++++..+..+ +
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~- 269 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--N- 269 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C-
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--c-
Confidence 4566789999999999999998875421 110 0111122334568999999999999999999999999877543 2
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+..++.++-...+|-+|...|......
T Consensus 270 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 270 ---ASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ---SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ---hHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 334556788888899998888888777654
No 98
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=89.23 E-value=1.7 Score=35.77 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...++.+|...|++.+|.+.+...- ... .-...|...+.+|...+++..|..+.+++-....+ +
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~-- 239 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRP--------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG--Y-- 239 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--
Confidence 4567789999999999999999887631 111 12468999999999999999999999998776533 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+...++++-...+|-+|-..|......
T Consensus 240 --~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 240 --VRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 224456788888889999988888877665
No 99
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.14 E-value=2 Score=32.67 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 92 EEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 92 Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
......+...+|.+|...|+|.+|...+.. |.++.. -...|.+.+..|...|++..|..+++++..+-+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-- 128 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET--------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-- 128 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG--
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--
Confidence 344566778899999999999999876643 233322 245899999999999999999999999988754
Q ss_pred cch-hHHHHHHHHHHHHHhh
Q 025373 171 QQE-VLNLQYKVCYARILDL 189 (254)
Q Consensus 171 ~d~-~LkL~yk~~~ari~d~ 189 (254)
+++ .+......+..++-..
T Consensus 129 ~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 129 AAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp GGHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 344 5555555555555444
No 100
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=89.01 E-value=1.2 Score=41.10 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChH-------HHHHHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDT-------FRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~-------~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
..+.....++.++...|+|.+|...+.. |.+......++++ .+...|...+.+|+..+++..|..+++|+-.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3455667789999999999999877653 2222111112222 2478999999999999999999999999988
Q ss_pred hcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 166 ~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+-.. + ...+...+.++-...+|-+|-..|......
T Consensus 346 ~~p~--~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDSA--N----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7543 2 233445677777888898888888777664
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.83 E-value=2.9 Score=38.91 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......|+.+|...|++.+|.+.+.. +.++.. -.+.|...+.+|...+++..|..+.+++-.+..+ +
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~-- 90 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG--------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--H-- 90 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--C--
Confidence 34556677777778888887776654 222211 2456777777888888888888888777665432 1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
...+..++.++-...+|-+|-..|.....
T Consensus 91 --~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 91 --PGIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22334456666666666666666655544
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=88.59 E-value=1.8 Score=34.91 Aligned_cols=94 Identities=9% Similarity=-0.111 Sum_probs=51.3
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHH
Q 025373 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 181 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~ 181 (254)
++.+|...|++.+|.+.+...-- .+ -+.......|...+.+|...+++..|..+.+++..+.... . ..+.
T Consensus 43 l~~~~~~~~~~~~A~~~~~~a~~-~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--~----~~~~ 112 (272)
T 3u4t_A 43 RAVCYYELAKYDLAQKDIETYFS-KV---NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--L----DMYG 112 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT-TS---CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--T----HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh-cc---CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--H----HHHH
Confidence 45566666666666665544211 11 1222345556666666666666666666666666544321 1 2344
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 182 CYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 182 ~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..+.++-...+|-+|-..|.....
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHhh
Confidence 555666666666666665555544
No 103
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.58 E-value=4.9 Score=35.93 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 92 Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
-.++..++..+|..+-..|++.+|.+++..+..... .++..|++ +.+|++.++|..|+.++.++....
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p-------~~~~~~~~-a~l~~~~~r~~dA~~~l~~a~~~~---- 165 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS-------EHLVAWMK-AVVYGAAERWTDVIDQVKSAGKWP---- 165 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC-------HHHHHHHH-HHHHHHTTCHHHHHHHHTTGGGCS----
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-------chHHHHHH-HHHHHHcCCHHHHHHHHHHhhccC----
Confidence 456889999999999999999999999999775321 33334444 459999999999999998664432
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
++.+.-.-+...+.++..-.+|=+|-.+|.....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3433333445557888889999999999988764
No 104
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=88.44 E-value=2.3 Score=39.67 Aligned_cols=107 Identities=9% Similarity=-0.044 Sum_probs=73.9
Q ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHH
Q 025373 67 RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQI 143 (254)
Q Consensus 67 ~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~---I~lEt~~~~~s~~~K~~~~l~i 143 (254)
....+...+..+.+|..-..---.--..++.....||.+|...|+|.+|...... |-...+ |. ..-.-...|.++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~-~Hp~~a~~l~nL 377 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PG-SHPVRGVQVMKV 377 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CS-SCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CC-CChHHHHHHHHH
Confidence 3345556777777776433222223345788899999999999999999887653 212222 12 222457789999
Q ss_pred HHHhhcccchhhHHHHHhhhhhhcc---cCcchhH
Q 025373 144 ARLYLEDDDAVNAEAFINKASFLVS---SSQQEVL 175 (254)
Q Consensus 144 ~rL~Le~~D~~~Ae~~~nKas~~~~---~~~d~~L 175 (254)
+.+|...|++..|+.++.||-.+.. ..+.+.+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 9999999999999999999988774 3444443
No 105
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.39 E-value=2.1 Score=28.47 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 131 ~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+++......|..++..|...+++..|..+.+++-.+... + ......++.++-...+|-+|-..|.+....
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444556789999999999999999999999999876543 2 233456777788888888888777776654
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=88.31 E-value=2.2 Score=37.70 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
+..-..++..+-..|+|.+|.+.+...--.. + ....|...+..|+..|++..|..+++++-.+-++ +
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--- 72 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK------E--DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--Y--- 72 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--C---
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------c--cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--H---
Confidence 3444678999999999999999887642111 1 1568999999999999999999999999876543 2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+...++++-...+|-+|-..|..+...
T Consensus 73 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 73 -SKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 245566888899999999999888887654
No 107
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=88.23 E-value=1.4 Score=35.63 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=63.7
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHH
Q 025373 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 181 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~ 181 (254)
++.+|...|++.+|.+.+...--- .+ .....|...+.+|...+++..|..+.+++..+.. .+.. . +.
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~--~--~~ 146 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDR------DT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPK--V--FY 146 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------ST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--CCHH--H--HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc------Cc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC--CcHH--H--HH
Confidence 377788999999999988763211 11 1346899999999999999999999999987732 2222 2 23
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 182 CYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 182 ~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+...-.+.+|-+|-..|......
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3442222234888888878777664
No 108
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.21 E-value=1.9 Score=35.37 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......++.++...|++.+|.+.+... .... .....|...+.+|+..|++..|..+.+++..+..+..+..
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINP--------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 345678899999999999999988762 2111 1245788999999999999999999999988775532221
Q ss_pred ------HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 025373 175 ------LNLQYKVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 175 ------LkL~yk~~~ari~d~~rkFLeAa~rY~e 202 (254)
.....+..+++++-...++-+|...|..
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1455666778888888888777666654
No 109
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=88.15 E-value=12 Score=32.16 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=11.3
Q ss_pred HHHHHHHHhhccHHHHHHHhc
Q 025373 100 EKLADLYESEQQWSKAAQMLS 120 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~ 120 (254)
..|+.++...|++.+|...+.
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 345555555555555555443
No 110
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=88.13 E-value=1.4 Score=31.41 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
......|+.+|...|+|.+|...+.. +.++.. -...|...+.+|...|++..|..+.+|+-.+.....+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 45667899999999999999988875 222222 12388999999999999999999999998776543343
No 111
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.11 E-value=9 Score=30.80 Aligned_cols=161 Identities=16% Similarity=0.068 Sum_probs=99.2
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Q 025373 21 YKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIRE 100 (254)
Q Consensus 21 y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~ 100 (254)
+..+-......++.+.-...++..+..+-.-......+......... .+..+.....++.. .|. ......
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~-~P~-------~~~a~~ 77 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGL--VNPALENGKTLVAR-TPR-------YLGGYM 77 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH-CTT-------CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh-CCC-------cHHHHH
Confidence 33333344445555544445555443333333333333333333322 23334444444432 332 234556
Q ss_pred HHHHHHHhh-----------ccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 101 KLADLYESE-----------QQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 101 ~LA~i~E~~-----------~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
.|+.++... |++.+|...+... .++. .-...|...+.+|...|++..|..+++|+..+-
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--------RYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 788888888 9999999887652 1111 124688899999999999999999999998876
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 169 SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 169 ~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++++ .+...+.++-...+|-+|-..|......
T Consensus 149 --~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 149 --DTPE----IRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp --CCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --cchH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333 2346788888889999998888887764
No 112
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.11 E-value=1.2 Score=32.20 Aligned_cols=64 Identities=11% Similarity=-0.016 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
..+...++.+|...|+|.+|...+.. +.++.. -...|...+.+|...+++..|..+++++-.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--------FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 46678899999999999999887764 222221 25689999999999999999999999998876
No 113
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=87.99 E-value=10 Score=31.22 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCcc----CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGID-LDSGMRV----IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~----~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
.....++.++...|++.+|.+.+...- ....... +..-.++...+..+..|+..+++..|..+.+++.....+
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 266 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-- 266 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Confidence 466789999999999999998876531 1111000 001113344566789999999999999999999877643
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++......+..++.++-...+|-+|-..|......
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55666667778899999999999998888887664
No 114
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=87.98 E-value=10 Score=31.22 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHH
Q 025373 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (254)
Q Consensus 99 r~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~ 178 (254)
...+|.++...|++.+|.+.+...--... -........|...+..|...|++..|..+++++-.+..+ + ..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~ 307 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEP---SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--N----VN 307 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC---SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--c----HH
Confidence 34568899999999999998876322111 144556778999999999999999999999999876432 2 33
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+...+.++-...+|-+|-..|......
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5667788888899999999888888774
No 115
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.95 E-value=2.6 Score=37.20 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccC
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~ 170 (254)
...........++.++...|+|.+|...+...- ...+. ...|...+.+|...+++..|..+++++......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l------~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 302 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI------ELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN- 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH------HHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------hhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-
Confidence 346667778889999999999999998887631 11122 677888888888888888888888887665432
Q ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 171 ~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+.. .+...+.++-...+|-+|-..|.....
T Consensus 303 -~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 303 -NSS----VYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp -CTH----HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred -CHH----HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 234455555555666555555555443
No 116
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=87.88 E-value=2.2 Score=34.02 Aligned_cols=96 Identities=6% Similarity=-0.124 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.-..++.++...|+|.+|.+.+.. +.++.. .-...|...+.+|...+++..|..+++|+..+-.. .
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~ 75 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------L 75 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------H
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC-------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------h
Confidence 345678899999999999998874 222220 11146666999999999999999999999866543 2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+...+.++-..++|-+|-..|......
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 445667888888889999988888877664
No 117
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=87.44 E-value=15 Score=32.60 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcc----------cchhhHHHHHhhhhh
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLED----------DDAVNAEAFINKASF 165 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~----------~D~~~Ae~~~nKas~ 165 (254)
.+...++.++...|++.+|.+.+... .+... .......+..+...+.+|... +++..|..+.+++-.
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV--QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 45677899999999999999888763 11110 111112333445555555555 999999999999987
Q ss_pred hcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 166 ~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..++ +. ..+..++.++-..++|-+|-..|......
T Consensus 457 ~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7543 22 44677888888999999998888887775
No 118
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=87.43 E-value=2.4 Score=30.51 Aligned_cols=66 Identities=20% Similarity=0.072 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
......++.++...|+|.+|...+... .++. .-...|...+.+|...+++..|..+++++..+..+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 446678999999999999999887652 2221 13568999999999999999999999999887654
No 119
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=87.36 E-value=4.6 Score=37.25 Aligned_cols=97 Identities=8% Similarity=-0.022 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcc---------cchhhHHHHHhhhhhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED---------DDAVNAEAFINKASFL 166 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~---------~D~~~Ae~~~nKas~~ 166 (254)
......|+.+|...|++.+|.+.+... -.+.++ ...|...+.+|... +++..|..+.+++-.+
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGA------LTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH------HTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 456778999999999999999988652 122233 37899999999999 9999999999999887
Q ss_pred cccCcchhHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHhh
Q 025373 167 VSSSQQEVLNLQYKVCYARILDLK--------RKFLEAALRYYDISQI 206 (254)
Q Consensus 167 ~~~~~d~~LkL~yk~~~ari~d~~--------rkFLeAa~rY~els~~ 206 (254)
..+ +.. .+...+.++-.. .+|-+|-..|......
T Consensus 209 ~p~--~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 209 DVL--DGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp CTT--CHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC--CHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 643 222 233445555555 6777777777666553
No 120
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=87.22 E-value=1.1 Score=32.00 Aligned_cols=68 Identities=6% Similarity=0.024 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
.....++.++...|+|.+|...+..+ ..... .....+.+...+.+|...|++..|..+.+++....++
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-----HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45677899999999999999988763 11111 1123568899999999999999999999999887654
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.15 E-value=2.6 Score=33.13 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...+|.+|...|+|.+|...+... .++. .-...|...+..|...+++..|..+++++-.+.. ++.+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~ 157 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHH
Confidence 456678999999999999998776542 2221 1246889999999999999999999999987754 3455
Q ss_pred HHHHHHHHHHHHHhh
Q 025373 175 LNLQYKVCYARILDL 189 (254)
Q Consensus 175 LkL~yk~~~ari~d~ 189 (254)
.......++.++-+.
T Consensus 158 ~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 158 IRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555544554444433
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=86.99 E-value=7 Score=36.30 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......|+.+|...|++.+|.+.+... .++.. -.+.|...+.+|...+++..|..+.+++..+..+ +.
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~- 125 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EP- 125 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH-
Confidence 456678999999999999999887652 22211 2568899999999999999999999999877543 22
Q ss_pred HHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhh
Q 025373 175 LNLQYKVCYARILDLK---RKFLEAALRYYDISQI 206 (254)
Q Consensus 175 LkL~yk~~~ari~d~~---rkFLeAa~rY~els~~ 206 (254)
..+..++.++-.. .++-+|-..|.+....
T Consensus 126 ---~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 126 ---YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp ---HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 2334566666667 7888888888777654
No 123
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=86.76 E-value=4.4 Score=26.83 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+.....++.++...|+|.+|...+... .++. .....|...+.+|...+++..|..+.+++..+.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 455677899999999999999887642 1111 1246888999999999999999999999987654
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=86.37 E-value=4.1 Score=35.72 Aligned_cols=90 Identities=21% Similarity=0.047 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~ 173 (254)
.+.+...||.+|...|+|.+|...+... .++.. -...|.+.+..|+..+++..|..+++|+-.+..+ +.
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~ 264 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSN--------NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NK 264 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CH
Confidence 4567788999999999999998877642 22221 2468899999999999999999999999887653 33
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHH
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAAL 198 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~ 198 (254)
.. +...++++....++-++.+
T Consensus 265 ~a----~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 265 AA----KTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHH
Confidence 32 3344555555566666633
No 125
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.24 E-value=1.8 Score=29.39 Aligned_cols=67 Identities=9% Similarity=-0.027 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcc-cchhhHHHHHhhhhhhccc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~-~D~~~Ae~~~nKas~~~~~ 169 (254)
.....++.++...|+|.+|.+.+... .+... ......|...+.+|... +++..|..+++++....+.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 45578999999999999999887652 22111 12456899999999999 9999999999999776543
No 126
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=85.34 E-value=5.6 Score=31.84 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=67.6
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHH----------------HHHHhhcccchhhHHHHHhhhh
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQ----------------IARLYLEDDDAVNAEAFINKAS 164 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~----------------i~rL~Le~~D~~~Ae~~~nKas 164 (254)
..+..+-..|+|.+|...+... -...++ -.+.|.. .+..|...|++..|..+++++-
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~a------l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQT------IALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------HHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456667788888888877652 011111 1233444 8999999999999999999998
Q ss_pred hhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 165 ~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+-++ + ...+...+.++....+|-+|-..|......
T Consensus 82 ~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 82 QKAPN--N----VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 87654 2 344566788888899999999999988775
No 127
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=85.26 E-value=1.5 Score=31.70 Aligned_cols=67 Identities=10% Similarity=-0.056 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
........|+.+|...|++.+|...+...- .+.++. ...|...+..|...|++..|..+++++-...
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGV------KQFPNH-QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344556667777777777777776665421 011111 4566666777777777777777777765554
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=84.98 E-value=3.6 Score=34.98 Aligned_cols=97 Identities=11% Similarity=-0.029 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
.....++..+...|+|.+|...+... .++.. -...|...+..|+..+++..|..+++++..+..+ +
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~--- 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--S--- 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--C---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C---
Confidence 34467899999999999999888642 22211 2468999999999999999999999999876543 2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~~ 207 (254)
...+...+.++-...+|-+|-..|.......
T Consensus 72 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 72 -VKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2334456788888889988888887766543
No 129
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=84.45 E-value=3.6 Score=32.93 Aligned_cols=94 Identities=9% Similarity=-0.096 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......|+.+|...|+|.+|.+.+... .++.. -...|...+.+|...|++..|..+++++..+..+. ..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~ 146 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND--PF 146 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--hH
Confidence 345678999999999999999988652 11111 14689999999999999999999999998765432 22
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els 204 (254)
..+.. .+.....+|-+|-..|.+..
T Consensus 147 ~~~~~-----~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 147 RSLWL-----YLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHH-----HHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHhcCHHHHHHHHHHHH
Confidence 22211 12233456666665554443
No 130
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=84.19 E-value=3.3 Score=28.39 Aligned_cols=61 Identities=15% Similarity=0.019 Sum_probs=47.8
Q ss_pred HHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHH-HHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 101 KLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLS-KCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~-~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
.+|..+...|+|.+|.+.+... ..+. . -.. .|...+.+|...+++..|..+..++-.+..+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p-------~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEP-------V-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS-------S-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-------C-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4688889999999999888752 1111 1 124 8889999999999999999999999877643
No 131
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=83.83 E-value=21 Score=30.93 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk 180 (254)
.++.++...|+|.+|.+.+...-- .. +-......+.|...+.+|...+++..|..+++++..+..+ + ...+
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~-~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~----~~~~ 332 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMK-TE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--N----VNAL 332 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-HC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--C----HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-cC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--c----HHHH
Confidence 348999999999999998876311 11 1144556789999999999999999999999998776432 2 2445
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+.++-...+|-+|...|......
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56788888889999998888888764
No 132
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.74 E-value=28 Score=32.42 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=72.7
Q ss_pred HHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHH
Q 025373 116 AQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLE 195 (254)
Q Consensus 116 A~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLe 195 (254)
-.++..+.-=|.++.+=..++.++..+.+.+|.+.||+..|-..+..+..=.....+...++.|+..++|++-..++|..
T Consensus 116 ~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~ 195 (445)
T 4b4t_P 116 ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQ 195 (445)
T ss_dssp HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34444444444445555567899999999999999999999999998876666667889999999999999999999999
Q ss_pred HHHHHHHHHh
Q 025373 196 AALRYYDISQ 205 (254)
Q Consensus 196 Aa~rY~els~ 205 (254)
|---+..++.
T Consensus 196 a~~~~~ki~~ 205 (445)
T 4b4t_P 196 ATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777764
No 133
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=83.71 E-value=17 Score=36.30 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHHH
Q 025373 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (254)
Q Consensus 17 ~~~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a 96 (254)
-++.|..+-.-....++.+.-....+..+.-+=.-.....-|......+.. .+..++..+.+|+. .|. .+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~--~~eA~~~~~~Al~l-~P~-------~~ 77 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK--LQEALMHYKEAIRI-SPT-------FA 77 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH-CTT-------CH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh-CCC-------CH
Confidence 356677776666667777544444444432222222233333333333332 34445555555542 332 24
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~L 175 (254)
..-..|+.+|...|++.+|.+.+.. |.++.. -.+.|...+.+|.+.|++..|..+.+|+-.+-.+ +.+
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~- 146 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPD- 146 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChH-
Confidence 5567899999999999999887753 222221 2468899999999999999999999999877543 222
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.+...+.++....+|-+|...|..+-.
T Consensus 147 ---a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 ---AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp ---HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred ---HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 233455666666666666666665543
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.34 E-value=2.5 Score=30.52 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
...+...++.+|...|+|.+|.+.+... .++.. -...|...+.+|...+++..|..+++++..+..
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4566788999999999999999887652 22111 156889999999999999999999999987654
No 135
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=83.05 E-value=3.1 Score=36.63 Aligned_cols=106 Identities=9% Similarity=-0.100 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCc------c---CChHHHHHHHHHHHHHhhcccchhhHHHHHhhhh
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMR------V---IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~------~---~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas 164 (254)
.+.....++..+...|+|.+|...+.. +.+..... . .....+...|...+.+|+..+++..|..+++|+-
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455567788999999999999887665 33222100 0 0011133589999999999999999999999998
Q ss_pred hhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 165 ~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+-.+ + ...+...+.++-...+|=+|-..|......
T Consensus 258 ~~~p~--~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEEEK--N----PKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHCTT--C----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76532 2 233445677788888998888888777553
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.74 E-value=5.1 Score=29.83 Aligned_cols=66 Identities=20% Similarity=-0.029 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
......|+.+|...|++.+|...+... .++.. -...|...+..|+..|++..|..+++++..+..+
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344567899999999999998887642 22221 1247888999999999999999999999887653
No 137
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=81.72 E-value=24 Score=30.15 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 139 KCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 139 ~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.|...+.+|.+.|++..|..+.+++..+.++ + ...+..++.++....+|-+|-..|.+...
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPE--F----AAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT--C----HHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555555555443221 1 11233345555555555555555544433
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=81.64 E-value=5.6 Score=27.23 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 132 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 132 s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++......|..+++.|...+++..|..+.+++...... + ......++.++-..++|-+|...|......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--N----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 44455788999999999999999999999999776432 2 223456677777788888887777766553
No 139
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=81.30 E-value=15 Score=27.72 Aligned_cols=96 Identities=10% Similarity=-0.073 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC-CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~-lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
......++.++...+++.+|...+.... ++. .-.+.|...+.+|...|++..|..+.+|+-.+-+. +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~-- 140 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNT--------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--F-- 140 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--h--
Confidence 3445667888899999999888776521 111 12457888899999999999999999998776433 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
...+...+.++-...+|-+|-..|...-.
T Consensus 141 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 141 --IRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23455678888888999888888877655
No 140
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=80.61 E-value=4.4 Score=30.22 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
..+...++.+|...|+|.+|...+.. |.++.. -.+.|...+..|...+++..|..+.+|+-.+-+ ++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P--~~~~ 116 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDP--SNEE 116 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc--CCHH
Confidence 34556789999999999999887754 333332 245799999999999999999999999987754 4444
Q ss_pred HH
Q 025373 175 LN 176 (254)
Q Consensus 175 Lk 176 (254)
.+
T Consensus 117 a~ 118 (126)
T 4gco_A 117 AR 118 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 141
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=80.53 E-value=35 Score=31.25 Aligned_cols=96 Identities=11% Similarity=-0.039 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhh--------ccHHHHHHHhccCCCCCCCccCCh--HHHHHHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 96 LIIREKLADLYESE--------QQWSKAAQMLSGIDLDSGMRVIDD--TFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 96 a~lr~~LA~i~E~~--------~d~~~AA~vL~~I~lEt~~~~~s~--~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
......|+.+|... |++.+|.+.+... -.+.+ ..-...|...+.+|...+++..|..+.+++..
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556788899888 9999998887652 11112 14567899999999999999999999999988
Q ss_pred hcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 166 ~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
+..+ +. ..+...++++..-.++-+|...|..+
T Consensus 287 l~p~--~~----~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPA--WP----EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTT--CH----HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCC--CH----HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7654 22 23445566677777777777665443
No 142
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=80.27 E-value=9.7 Score=34.18 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
.......+...||.+|...|+|.+|...+.. +.++. ...+.|.+.+..|...+++..|..+++++..+..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4455677788999999999999999887654 22222 23568899999999999999999999999887643
Q ss_pred CcchhHHH
Q 025373 170 SQQEVLNL 177 (254)
Q Consensus 170 ~~d~~LkL 177 (254)
++....
T Consensus 340 --~~~~~~ 345 (370)
T 1ihg_A 340 --DKAIQA 345 (370)
T ss_dssp --CHHHHH
T ss_pred --CHHHHH
Confidence 444433
No 143
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=79.57 E-value=10 Score=30.20 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
..+...|+.+|...|++.+|...+.. +.++.. -...|...+.+|+..|++..|..+.+|+-.+-++
T Consensus 54 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 54 SKLATELALAYKKNRNYDKAYLFYKELLQKAPN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 44556799999999999999988765 222221 2578999999999999999999999999887553
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=78.89 E-value=12 Score=26.04 Aligned_cols=71 Identities=10% Similarity=-0.126 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 130 VIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 130 ~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+......-|...+..|...+++..|..+.+++...... + .......+.++-...+|-+|-..|......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--D----AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--C----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--c----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3455667889999999999999999999999999776432 2 344566777888888888887777766553
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=77.94 E-value=13 Score=25.00 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+.+.|...+..|+..+++..|..+.+++-..... + .......+.++-...+|-+|-..|......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--N----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--c----HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999876543 2 234555677777788888888887777654
No 146
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=76.67 E-value=32 Score=28.68 Aligned_cols=65 Identities=11% Similarity=-0.033 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
....|...+.+|...|++..|..+++++..+..+ + ...+..++.++-...+|-+|-..|......
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--D----YLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678889999999999999999999998776433 2 234566788888888888888888776553
No 147
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=76.46 E-value=15 Score=29.43 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL 177 (254)
....+|..+-..|+|.+|...+..+--.... .....+.+...+..|...+|+..|....+++-...++...-. ..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~-~a 80 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YV 80 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH-HH
Confidence 3456788899999999999999875321111 123456888899999999999999999999988776532211 12
Q ss_pred HHHHHHHH----------------HHhhhhhHHHHHHHHHHHHhh
Q 025373 178 QYKVCYAR----------------ILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 178 ~yk~~~ar----------------i~d~~rkFLeAa~rY~els~~ 206 (254)
.|..-.+. +.....++-+|...|..+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 23222221 111245677777777777664
No 148
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=76.29 E-value=10 Score=26.62 Aligned_cols=64 Identities=13% Similarity=0.000 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...|...+.+|+..+++..|..++.++-.+-.+. . ..+..++.++....+|-+|...|......
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY--V----GTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--T----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999999998876542 2 25556788888899998888888766554
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=75.57 E-value=18 Score=36.05 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
+.....|+.+|...|++.+|...+.. |.++.. -.+.|...+.+|++.+++..|..+.+|+-.+-.+ +
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--~-- 110 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--F-- 110 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--
Confidence 45567899999999999999988764 233221 2568999999999999999999999999877543 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..-+...+.++-...+|-+|-..|...-..
T Consensus 111 --~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 111 --ADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223456788888899999998888876654
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=75.56 E-value=12 Score=34.38 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 94 QVLIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 94 q~a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
....+...+|.+|...|+|.+|...+.. |.++.. -...|.+.+..|+..+++..|..+++|+..+-.+ +
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~ 384 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA--------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--N 384 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C
Confidence 3466778899999999999999887754 222221 2567899999999999999999999999877543 3
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAA 197 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa 197 (254)
..... ..++++....++-++.
T Consensus 385 ~~a~~----~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 385 KAARL----QISMCQKKAKEHNERD 405 (457)
T ss_dssp -CHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHH
Confidence 33322 3344444444454444
No 151
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=75.38 E-value=15 Score=31.03 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc-----
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ----- 171 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~----- 171 (254)
....+|..+...|++.+|...+... ..+.. -.+.+...+++|+..|++..|..+++++...-.+..
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 3456777777778888877776652 11111 135677777788888888888877777744322100
Q ss_pred ------------------------chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 ------------------------QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 ------------------------d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+|+ ....+...|.++-...+|-+|-..|.++-..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 000 1122334566666667777777777776654
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=72.09 E-value=24 Score=25.07 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 133 DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 133 ~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+..-...|...+.+|...+++..|..+++|+-.+.++ + ...+..++.++-...+|=+|-..|......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--H----QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999877654 2 234445778888888888888888776654
No 153
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=70.74 E-value=25 Score=26.87 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=43.7
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
..+|..+...|+|.+|...+...- ...+ .-.+.|...+++|+..|++..|..+++++....
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al------~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLS------DELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC------HHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH------HHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 456778888888888888887621 1111 125678888888888888888888888875543
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=70.62 E-value=6.7 Score=29.04 Aligned_cols=70 Identities=10% Similarity=0.157 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.....+|.+|...|+|.+|-+.+.. |.++... ..........|.++...|...+|+..|..+.+|+-...
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4456789999999999999876643 3333221 11233456789999999999999999999999986544
No 155
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=70.60 E-value=5.7 Score=38.73 Aligned_cols=55 Identities=20% Similarity=0.177 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHHHHH-HHhcCC
Q 025373 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVT-CTILAA 236 (254)
Q Consensus 176 kL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~Av~-caILAp 236 (254)
.+.+..+..|++-.+++|.+||+=-+.|... +..++=++|...|+.|+. |....|
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s------~~~i~L~~RIeyLsrA~~~a~~~~~ 271 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATS------NFDITLFERIEFLSRANGFCNSVSP 271 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSS------SSCCCHHHHHHHHHHHHHHC-----
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHHhhhcCC
Confidence 4667788999999999999999999999985 367899999999999995 333333
No 156
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=70.35 E-value=22 Score=24.05 Aligned_cols=65 Identities=8% Similarity=-0.143 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..+.|...+..|+..+++..|..+.+++..+... + ...+...+.++-...+|-+|-..|......
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--N----PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999877543 2 233456788888888998888888777664
No 157
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=70.32 E-value=18 Score=25.40 Aligned_cols=63 Identities=10% Similarity=-0.074 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..|...+.+|+..+++..|..+++++..+... + ...+..++.++-...+|-+|-..|......
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--Y----SVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999877543 2 224456788888888998888888876654
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=70.21 E-value=6.3 Score=36.69 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~ 174 (254)
+.....+|.+|...|+|.+|...+.. +.++. .-...|...+.+|...+++..|..+.+|+-.+..+ +.+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~ 109 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKD 109 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH
Confidence 56678899999999999999887754 22222 12468889999999999999999999999877543 223
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 025373 175 LNLQYKVCYARILDLKRKFLEAALRYY 201 (254)
Q Consensus 175 LkL~yk~~~ari~d~~rkFLeAa~rY~ 201 (254)
..+..-.+..+-...+|-+|-..|.
T Consensus 110 --~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 110 --AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --HHHHHHHHHHHHHHHHHCCC-----
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233333333555677877777666
No 159
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=69.08 E-value=30 Score=32.44 Aligned_cols=68 Identities=9% Similarity=-0.039 Sum_probs=43.2
Q ss_pred HHHHHHHHhhccHHHHHHHhc--------------cCCCCCCC----------------------ccCChHHHHHHHHHH
Q 025373 100 EKLADLYESEQQWSKAAQMLS--------------GIDLDSGM----------------------RVIDDTFRLSKCVQI 143 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~--------------~I~lEt~~----------------------~~~s~~~K~~~~l~i 143 (254)
+.||+.|.+.|+|.|||-+|. .++++... ..++.+.-++.+-++
T Consensus 15 ~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~~a 94 (428)
T 2wm9_A 15 DSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQC 94 (428)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHHHH
Confidence 689999999999999999986 35553210 011333344456666
Q ss_pred HHHhhcccchhhHHHHHhhhhhhc
Q 025373 144 ARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 144 ~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
+.++-..+.|..|-..++-+...+
T Consensus 95 i~~f~kg~~~E~ai~~~k~L~~~y 118 (428)
T 2wm9_A 95 ADGLWKAERYELIADIYKLIIPIY 118 (428)
T ss_dssp HHHHHHTTCGGGHHHHHTTTHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHH
Confidence 666666666666666655544444
No 160
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=68.89 E-value=53 Score=27.83 Aligned_cols=99 Identities=9% Similarity=-0.063 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.....++.+|...|++.+|.+.+..+---. ++..-..+..-.+.++...|++..|....+++....++ +
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--~---- 199 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--T---- 199 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC--C----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC--c----
Confidence 456778999999999999999887742111 11111222222235566778999999999998877443 2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+..++.++....+|=+|-..|.+.-..
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334566788888889999988888887664
No 161
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=68.88 E-value=51 Score=27.66 Aligned_cols=103 Identities=14% Similarity=-0.033 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCCCCCCC---------------ccCChH------------HHHHHHHHHHHHhh
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGM---------------RVIDDT------------FRLSKCVQIARLYL 148 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~---------------~~~s~~------------~K~~~~l~i~rL~L 148 (254)
...+..||.++...|++.+|...|..+.-.... +..+.. .-.+.+...+.+|+
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 467788999999999999999999987432210 000000 02345666677777
Q ss_pred cccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 025373 149 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 149 e~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~e 202 (254)
..|++..|...+.++-..-.+..+.. -+..++.++....++-+|...|+.
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~~~~~~----a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLTAADGQ----TRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTGGGGH----HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcccccccch----HHHHHHHHHHHcCCCCcHHHHHHH
Confidence 77777777777777766544322222 234456666666666666666654
No 162
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=68.69 E-value=28 Score=30.44 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhcc-CCC--CCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc-
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSG-IDL--DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ- 171 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~-I~l--Et~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~- 171 (254)
+.+=..||.+|-..|++.+|-+.+.. +.+ +... .-.+..-+..|-.++..|...|++..|..|.+|+..+.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34456789999999999999877753 111 0110 001122356788999999999999999999999987654321
Q ss_pred --chh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 --QEV-LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 --d~~-LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+.+ -......-.+.+...+.+|-+|-..|......
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 111 12233333444444556676666666655443
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=68.40 E-value=4.2 Score=35.81 Aligned_cols=63 Identities=10% Similarity=-0.038 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 98 IREKLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+...||.+|...|+|.+|...+.. +.++. .-...|.+.+..|+..+++..|..+++|+..+-.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 667899999999999999887754 22221 1246799999999999999999999999977654
No 164
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=67.69 E-value=24 Score=26.56 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=50.8
Q ss_pred HHHHHHHHHH-HHhhccH--HHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 96 LIIREKLADL-YESEQQW--SKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 96 a~lr~~LA~i-~E~~~d~--~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
..+...++.+ +...|++ .+|...+... ..+.. -...|...+.+|...+++..|..+++++-.+..+
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--------EITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 3456678888 8889998 9998887652 11111 2457888999999999999999999999887654
No 165
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=67.06 E-value=10 Score=27.43 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=48.6
Q ss_pred HHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhccc
Q 025373 100 EKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
..|+..+-..|+|..|..-+... ...... ......+.++|...+..|.+-|++..|-.+.+++..+-++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~-~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhcc-CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 35778888888888887766441 100000 0012356789999999999999999999999999776554
No 166
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=66.96 E-value=18 Score=27.43 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 135 ~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+.+...+..|+..|++..|..+.+++..+-+. +. .+....+.++-...+|-+|-..|......
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DS----RFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35778899999999999999999999998776543 22 33456788888889999998888887654
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=66.51 E-value=74 Score=28.60 Aligned_cols=134 Identities=9% Similarity=-0.021 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCCh-----HHHHHHHHHHH--HHhhcccchhhHHHHHhhhhhhc
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-----TFRLSKCVQIA--RLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~-----~~K~~~~l~i~--rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
....+-.++.++...|+...|.+.|..+ ....+ ++-+-+++-.+ .+....+++..|--+...+...+
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~------~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNY------TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHH------HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 4455667899999999999999999873 33444 46666666666 44445569999998889876665
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCC------CHHHHHHHHHHHHHHHhcCCCCchh
Q 025373 168 SSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETI------DEEALEQALSAAVTCTILAAAGPQR 241 (254)
Q Consensus 168 ~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~i------de~er~~~L~~Av~caILApagp~R 241 (254)
.+.+... +.|- | .-+.++|=+|=.-...+-... |.+ +++ --.+|.++|+|.... |..=
T Consensus 209 p~~~~~~--lLln-~----~~~~g~~~eAe~~L~~l~~~~------p~~~~k~~~~p~-~~~~LaN~i~l~~~l--gk~a 272 (310)
T 3mv2_B 209 PTWKTQL--GLLN-L----HLQQRNIAEAQGIVELLLSDY------YSVEQKENAVLY-KPTFLANQITLALMQ--GLDT 272 (310)
T ss_dssp CSHHHHH--HHHH-H----HHHHTCHHHHHHHHHHHHSHH------HHTTTCHHHHSS-HHHHHHHHHHHHHHT--TCTT
T ss_pred CCcccHH--HHHH-H----HHHcCCHHHHHHHHHHHHHhc------ccccccccCCCC-CHHHHHHHHHHHHHh--ChHH
Confidence 4311222 3333 3 444556666544444332210 111 111 145887777777764 3455
Q ss_pred hHHHHHHhh
Q 025373 242 SRVLATLYK 250 (254)
Q Consensus 242 SrlL~~Lyk 250 (254)
.+++..|.+
T Consensus 273 ~~l~~qL~~ 281 (310)
T 3mv2_B 273 EDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788887765
No 168
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.33 E-value=19 Score=30.05 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc---chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ---QEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~---d~~LkL~yk~~~ari~d~~rkFLeAa~rY~el 203 (254)
.=.++++++..++.+-|..|+...+++..+..... .++.+.+-..++|-.+=..++|-.|...|...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34688999999999999999999999887764333 36778888899999999999999999999884
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=63.85 E-value=5.5 Score=37.07 Aligned_cols=92 Identities=17% Similarity=0.067 Sum_probs=68.1
Q ss_pred HHHHHHHhhccHHHHHHHhcc-CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSG-IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~-I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~y 179 (254)
.+|..+...|+|.+|.+.+.. +.++.. -...|...+..|++.+++..|..+.+|+-.+-.+ + ...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~----~~~ 76 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--Y----IKG 76 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--C----HHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--C----HHH
Confidence 356667788999999887764 122111 2678999999999999999999999999877432 2 223
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 180 k~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+...|.++-...+|-+|-..|......
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445678888888998888888877664
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=63.07 E-value=65 Score=30.47 Aligned_cols=100 Identities=6% Similarity=-0.168 Sum_probs=71.2
Q ss_pred HHHHHhhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc---cCcchhHH
Q 025373 103 ADLYESEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS---SSQQEVLN 176 (254)
Q Consensus 103 A~i~E~~~d~~~AA~vL~~---I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~---~~~d~~Lk 176 (254)
|.-+..+|+|.+|-.++.. |.....+ . +.-.-+..+-.++.+|...|+|..|+.+..|+-.+.. ..+.+++
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~- 392 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFA-D-TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL- 392 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBC-T-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH-
Confidence 3446688999999766532 2222221 1 2234788899999999999999999999999987653 3556665
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..-+.-.|.++....+|-+|-.-|..-..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55556778889999999888776665443
No 171
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=62.54 E-value=29 Score=28.11 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhc----ccchhhHHHHHhhhhh
Q 025373 137 LSKCVQIARLYLE----DDDAVNAEAFINKASF 165 (254)
Q Consensus 137 ~~~~l~i~rL~Le----~~D~~~Ae~~~nKas~ 165 (254)
...+...+.+|.. .+|+..|..+.+|+..
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 3445555555555 5555555555555544
No 172
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=62.51 E-value=21 Score=27.84 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
-.+.|...+..|...|++..|..+.+++-.+-+. + -.+....+.++-...+|-+|-..|......
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--N----VDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999887653 2 346677888999999999999999887665
No 173
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.16 E-value=13 Score=31.19 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhccCCCCCC
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSG 127 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~ 127 (254)
...+|..+|..|.+-++|.+|-.+|.+||...-
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 467999999999999999999999999998763
No 174
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=61.89 E-value=70 Score=26.77 Aligned_cols=63 Identities=13% Similarity=-0.032 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
...|...+.+|...+++..|..+.+++-.+..+ + ...+..++.++-...+|-+|-..|.....
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--D----YSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446677777777777777777777777665432 1 12344556666667777777666666544
No 175
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=61.83 E-value=73 Score=26.92 Aligned_cols=132 Identities=10% Similarity=-0.053 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc
Q 025373 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE 149 (254)
Q Consensus 70 ~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le 149 (254)
.+........++......... ..-.+.+...++.++...|++.+|...+...--... + ........+...+++++.
T Consensus 190 ~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~--~~~~~~~~~~~la~~~~~ 265 (373)
T 1hz4_A 190 LDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF-A--NNHFLQGQWRNIARAQIL 265 (373)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC-T--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC-C--cchhhHHHHHHHHHHHHH
Confidence 344455555555543332211 111222233566778899999999998876432111 1 111122356788999999
Q ss_pred ccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 150 ~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.|++..|..+++++........++..........++++....++-+|...|.+...
T Consensus 266 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 266 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999877655444444455667788888888888777777766544
No 176
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=61.50 E-value=34 Score=22.99 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=47.3
Q ss_pred HHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 141 VQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 141 l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
++.+..|+..+++..|..+++++.....+ +.. ..+..++.++-...+|-+|-..|......
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV--GKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--THH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56788899999999999999999776543 221 14556777888888999998888887665
No 177
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.31 E-value=1.1e+02 Score=28.44 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=77.4
Q ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHH-HHHHHHHHHH
Q 025373 67 RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTF-RLSKCVQIAR 145 (254)
Q Consensus 67 ~l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~-K~~~~l~i~r 145 (254)
.++..-.-++....++.+..-.-+.+.|..-.++.+....... | -. |..+=+|.+.
T Consensus 51 ~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-------------------r----~flr~~l~~kL~~ 107 (394)
T 3txn_A 51 SISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEK-------------------R----TFLRQSLEARLIA 107 (394)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT-------------------C----HHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-------------------H----HHHHHHHHHHHHH
Confidence 3444333444455666665444556777666655553333221 1 12 4455568999
Q ss_pred HhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 025373 146 LYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYD 202 (254)
Q Consensus 146 L~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~e 202 (254)
+|++.+||..|-..+++...-....+|..+.+.-+.+.++++-.-+++-.+=.-|..
T Consensus 108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 108 LYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999888877788899999999999998887777665444433
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=59.49 E-value=35 Score=24.78 Aligned_cols=64 Identities=6% Similarity=-0.142 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
...+...+..+++.|++..|...+.++..+-++ + ......++.++....+|-+|-..|...-..
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE--R----EEAWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345788899999999999999999999877654 2 233456788888889999998888877664
No 179
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=56.57 E-value=38 Score=31.30 Aligned_cols=95 Identities=7% Similarity=-0.070 Sum_probs=66.8
Q ss_pred HhhccHHHHHHHhc---cCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc---cCcchhHHHHHH
Q 025373 107 ESEQQWSKAAQMLS---GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS---SSQQEVLNLQYK 180 (254)
Q Consensus 107 E~~~d~~~AA~vL~---~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~---~~~d~~LkL~yk 180 (254)
-.+|+|.+|-.... .|.....+ . +.-+-+..+-.++..|...|+|..|+.|..|+-.+.. ..+.+++ ..-+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg-~-~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~~l 374 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLP-D-INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR-GVQV 374 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCC-T-TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCC-c-cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH-HHHH
Confidence 35689988876654 23333321 1 3335788999999999999999999999999987663 3566665 4444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 025373 181 VCYARILDLKRKFLEAALRYYDIS 204 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els 204 (254)
.-.|.++....+|-+|-.-|..-.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 567888888888877766555433
No 180
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=56.31 E-value=92 Score=29.39 Aligned_cols=86 Identities=21% Similarity=0.053 Sum_probs=62.0
Q ss_pred HHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc------cCcchhHHHH
Q 025373 105 LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS------SSQQEVLNLQ 178 (254)
Q Consensus 105 i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~------~~~d~~LkL~ 178 (254)
+.-.-|+|.+|-++-..++ +. +.|-+.++++|+.+|+..|+....|+...-. ...+.+.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~---------~~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~--- 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES---------AE---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG--- 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC---------CH---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH---
T ss_pred hhhhcCCHHHHHHHHHhhC---------cH---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH---
Confidence 3455788988888865542 11 5999999999999999999999988765321 1233331
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 179 yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
-..++++...+.+|..|-..|......
T Consensus 726 -~~~~~~~a~~~~~~~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 726 -LVTLAKDAETTGKFNLAFNAYWIAGDI 752 (814)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHcCCH
Confidence 235688888899999888888776553
No 181
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=55.47 E-value=44 Score=23.83 Aligned_cols=69 Identities=9% Similarity=0.148 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d-~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+-|..+.+.+++.+||..|..+..+|-....+..+ ..-+-..+..++..+....+|-+|-..|.+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46789999999999999999999999877643211 1112233344555555666666666666655543
No 182
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=54.91 E-value=49 Score=31.13 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHhcc----CCCCC----------C-CccCChH-HHHHHHHHHHHHhhcccchhhHHH
Q 025373 95 VLIIREKLADLYESEQQWSKAAQMLSG----IDLDS----------G-MRVIDDT-FRLSKCVQIARLYLEDDDAVNAEA 158 (254)
Q Consensus 95 ~a~lr~~LA~i~E~~~d~~~AA~vL~~----I~lEt----------~-~~~~s~~-~K~~~~l~i~rL~Le~~D~~~Ae~ 158 (254)
.-+-=+.||+.|.+.|+|.|||-+|.- +.++. + ...-+.. -|-.+|-+++.+|-..+-|..|-.
T Consensus 34 ~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~ 113 (436)
T 2yin_A 34 YIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAIS 113 (436)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 334447899999999999999999921 11111 0 0111222 255567777777777777777766
Q ss_pred HHhhhhhhc
Q 025373 159 FINKASFLV 167 (254)
Q Consensus 159 ~~nKas~~~ 167 (254)
.++-.....
T Consensus 114 l~k~L~~~y 122 (436)
T 2yin_A 114 LCKELAEQY 122 (436)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554444
No 183
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=53.69 E-value=66 Score=26.93 Aligned_cols=28 Identities=4% Similarity=0.025 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhh
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASF 165 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~ 165 (254)
++|+.-+.++...|++.+|..+..|+..
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455555555555555555555555544
No 184
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=50.69 E-value=77 Score=25.47 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=63.7
Q ss_pred HHHHHHHHh----hccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc----ccchhhHHHHHhhhhhhcccCc
Q 025373 100 EKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 100 ~~LA~i~E~----~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le----~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
..|+.+|.. .+++.+|.+.+... +.. .-...+...+.+|.. .+|+..|..+.+|+...-
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a--------~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---- 144 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKA--------CDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---- 144 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH--------HHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHH--------HHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----
Confidence 346778888 88888888877652 111 135688889999999 999999999999998643
Q ss_pred chhHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHh
Q 025373 172 QEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~----~rkFLeAa~rY~els~ 205 (254)
+.. -...++.++-. ..++-+|-..|.....
T Consensus 145 ~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 178 (273)
T 1ouv_A 145 DGD----GCTILGSLYDAGRGTPKDLKKALASYDKACD 178 (273)
T ss_dssp CHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 222 23345666666 7788887777776654
No 185
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=49.65 E-value=23 Score=34.38 Aligned_cols=64 Identities=13% Similarity=-0.050 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
.....+|.+|...|++.+|.+.+... .++. .-.+.|...+.+|+..+++..|..+.+|+-.+-.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVG--------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45667799999999999999887652 1111 1246888889999999999999999999877654
No 186
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=49.35 E-value=83 Score=23.77 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHh-hcccchhhHHHHHhhhhhhccc
Q 025373 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY-LEDDDAVNAEAFINKASFLVSS 169 (254)
Q Consensus 91 ~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~-Le~~D~~~Ae~~~nKas~~~~~ 169 (254)
...........|+.++...|++.+|...+..+.-.. + +... +.-.+.+. .+..+...|...++++-.+.++
T Consensus 35 ~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~ 106 (176)
T 2r5s_A 35 ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAANPD 106 (176)
T ss_dssp HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT
T ss_pred HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHhCCC
Confidence 334446678889999999999999999998863211 1 2221 11122222 2323344567777777665443
Q ss_pred CcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 170 ~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
+. ..+...+.++....+|-+|-..|..+-..
T Consensus 107 --~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 107 --NF----ELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp --CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --CH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 22 33445688888899999999999888764
No 187
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=46.39 E-value=89 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=40.5
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhh
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~ 166 (254)
.+++.++.+|+|.+|...... +..|.+.++.|+.-|++..|-...+||+..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~k---------------A~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNN---------------VSNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHh---------------hhHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 477777777777777776665 348999999999999999999999988654
No 188
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=44.59 E-value=81 Score=26.34 Aligned_cols=64 Identities=9% Similarity=-0.113 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 137 ~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
.+.+...+..|...|++..|..+.+++-.+... + ..++...+.++-...+|-+|-..|......
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 457888999999999999999999999887543 2 345667788888888998888888776553
No 189
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=43.29 E-value=1.4e+02 Score=24.78 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
.+...++.+++..|++.+|..++... .+.... .. .+|+.-+.++...+++..|....+|+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----PT---LVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----TH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----cc---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 46677888888899999988876542 222110 01 278888888888888888888888887654
No 190
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=41.75 E-value=1.1e+02 Score=25.41 Aligned_cols=93 Identities=9% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc-----cc-CcchhHHHHHH
Q 025373 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV-----SS-SQQEVLNLQYK 180 (254)
Q Consensus 107 E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~-----~~-~~d~~LkL~yk 180 (254)
-+-|++..|-++...+ ++ -..|-+.....|..++..-||.-..|++.+- +. ..|. ...
T Consensus 16 L~lg~l~~A~e~a~~l--~~----------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~----e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--ND----------SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDV----NKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CC----------HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCH----HHH
T ss_pred HhcCCHHHHHHHHHHh--CC----------HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCH----HHH
Confidence 4568899998887654 11 3489999999999999999999988887632 11 2222 122
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhhhhhcCCCCCCHHHHHHHHHH
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSA 227 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~~~~~~~~~~~ide~er~~~L~~ 227 (254)
.-++++...+.+|.-|-+.|..+-.. +++..+|..
T Consensus 80 ~kla~iA~~~g~~n~af~~~l~lGdv------------~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTREDFGSMLLNTFYNNST------------KERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCH------------HHHHHHHHH
T ss_pred HHHHHHHHHCccHHHHHHHHHHcCCH------------HHHHHHHHH
Confidence 47899999999999998888777654 666766644
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=39.82 E-value=1.2e+02 Score=27.53 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccC-CCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhc
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGI-DLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I-~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~ 167 (254)
..+...++.+++..|++.+|..++... .+.. ..-...|+.-++++...+++..|...++|+-...
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIED-------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-------cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 557778899999999999999887642 1111 1112489999999999999999999999997653
No 192
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=36.89 E-value=1.4e+02 Score=26.70 Aligned_cols=62 Identities=6% Similarity=-0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 138 ~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..|.....+|...+++..|..+++|+-.+-.+ + .+-+...+.++....+|-+|-..|...-.
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--~----~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAK--N----YHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444455555555555555554443321 1 11122334444444455555555544444
No 193
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=36.64 E-value=1.1e+02 Score=29.50 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=65.0
Q ss_pred HhhccHHHHHHHhccCC---CCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHH
Q 025373 107 ESEQQWSKAAQMLSGID---LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCY 183 (254)
Q Consensus 107 E~~~d~~~AA~vL~~I~---lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ 183 (254)
-..|++.+|.+.+...- ++.. .... ..-.+.|...++.|+..+++..|..+++++-.+-.+ + -..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~-~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~----~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDAD-GVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--R----WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC--------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--C----HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccc-cccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--h----HHHHHHH
Confidence 66788999988876532 1111 0111 123458999999999999999999999999876543 2 2344456
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhh
Q 025373 184 ARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 184 ari~d~~rkFLeAa~rY~els~~ 206 (254)
+.++-...+|-+|-..|......
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788889999999999887664
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=34.39 E-value=49 Score=26.31 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=47.8
Q ss_pred HHHHHHHHHHh----hccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc----ccchhhHHHHHhhhhhh
Q 025373 98 IREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFL 166 (254)
Q Consensus 98 lr~~LA~i~E~----~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le----~~D~~~Ae~~~nKas~~ 166 (254)
-...|+.+|.. .+|+.+|.+.+..- ++.+ +.+.-..-+.....+|+. .+|+..|..|.+|+..+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDA-ARDS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHH-TSST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHH-HHcC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44678999987 88999999888752 1111 001236678888999999 88999999999999776
No 195
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=33.58 E-value=1.4e+02 Score=25.39 Aligned_cols=84 Identities=8% Similarity=0.167 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcC---CCHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhhcCcccchHH
Q 025373 19 EQYKHILSSVISS---NDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRL--EPETQKEIANYTLAQIQPRVVSFEE 93 (254)
Q Consensus 19 ~~y~~ll~~i~~~---~~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l--~~~~~~~v~~~~L~~i~~~~is~Ee 93 (254)
+.+..++...-.. ...+.+...|..+++.+++....+.+...|++.+... +++...++....| +...|-.
T Consensus 31 ~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~L-----r~~G~~~ 105 (233)
T 2h56_A 31 SRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEAL-----RQAGVSK 105 (233)
T ss_dssp HHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHH-----HHTTCCH
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHH-----HHcCCCH
Confidence 3455555554221 1236789999999999999999999999999988655 3444433333333 3344556
Q ss_pred HHHHHHHHHHHHHH
Q 025373 94 QVLIIREKLADLYE 107 (254)
Q Consensus 94 q~a~lr~~LA~i~E 107 (254)
+.++-=..+|+...
T Consensus 106 ~KA~~I~~~A~~i~ 119 (233)
T 2h56_A 106 RKIEYIRHVCEHVE 119 (233)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 65554455555543
No 196
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=32.99 E-value=2.5e+02 Score=24.63 Aligned_cols=100 Identities=10% Similarity=-0.058 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCC-hHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHH
Q 025373 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (254)
Q Consensus 98 lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s-~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~Lk 176 (254)
.+..++-++-..|+|.+|-..|... ...+ +.....++.--...+-.-|++..|..+..|+..-..+ +...
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a------~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~---P~~~ 207 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSA------GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG---EACA 207 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTG------GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT---TTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC---cccc
Confidence 7789999999999999999999731 2232 3335567777788899999999999999999743211 2111
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 177 L~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
..=...++-.+-...++=+|...|..+...
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 112234566677788899999999999886
No 197
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=30.93 E-value=1.3e+02 Score=22.37 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhhcCC------CHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 025373 17 KIEQYKHILSSVISSN------DIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQP 86 (254)
Q Consensus 17 ~~~~y~~ll~~i~~~~------~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~ 86 (254)
.++.++.+|..-+++. |++.+..|+..++ ++-.+--...+|.-+...+.+-.++.+...-..+++.||.
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv-~~~~lek~~~vlk~l~rlv~~~~~~~W~~A~~~I~~~VQ~ 84 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLI-EEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQV 84 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-hccCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 4677888888888644 5677778887777 3445666666777666666665667777777777776663
No 198
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=29.89 E-value=22 Score=28.50 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhcccchhhHH
Q 025373 135 FRLSKCVQIARLYLEDDDAVNAE 157 (254)
Q Consensus 135 ~K~~~~l~i~rL~Le~~D~~~Ae 157 (254)
+-.+.|++-++=||++||+++|-
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAs 27 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQAC 27 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHH
Confidence 45679999999999999999884
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=29.04 E-value=1.3e+02 Score=27.80 Aligned_cols=93 Identities=10% Similarity=-0.126 Sum_probs=65.5
Q ss_pred hhccHHHHHHHhcc---CCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc---cCcchhHHHHHHH
Q 025373 108 SEQQWSKAAQMLSG---IDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS---SSQQEVLNLQYKV 181 (254)
Q Consensus 108 ~~~d~~~AA~vL~~---I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~---~~~d~~LkL~yk~ 181 (254)
..|+|.+|-.++.. |.....+ . +.-.-+..+-.++..|...|+|..|+.+..|+-.+.. ..+.+++-..| .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg-~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l-~ 386 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFE-D-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW-L 386 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBC-T-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-H
T ss_pred hccCHHHHHHHHHHHHHHhhCccC-h-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH-H
Confidence 44788888776643 2222221 1 2234678899999999999999999999999987664 35666664444 4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHH
Q 025373 182 CYARILDLKRKFLEAALRYYDI 203 (254)
Q Consensus 182 ~~ari~d~~rkFLeAa~rY~el 203 (254)
-.|.++....+|-+|-.-|..-
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHH
Confidence 6788999999998876655443
No 200
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=28.03 E-value=43 Score=26.97 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 136 K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
-..-.+++|+.|..+||...|-+++.|.+.++.
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~ 71 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFI 71 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999999988775
No 201
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=27.79 E-value=1e+02 Score=26.15 Aligned_cols=84 Identities=10% Similarity=0.041 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcC-C---CHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcccchHHHH
Q 025373 20 QYKHILSSVISS-N---DIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQV 95 (254)
Q Consensus 20 ~y~~ll~~i~~~-~---~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~~~is~Eeq~ 95 (254)
.+..++...-.. . ..+.+...|..+++.+++....+.+...|+..+...+++....+....| +...|-.+.
T Consensus 41 ~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~L-----r~~G~~~~K 115 (225)
T 2yg9_A 41 VLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDL-----RGVGLSWAK 115 (225)
T ss_dssp HHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHH-----HHTTCCHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHH-----HHCCCcHHH
Confidence 455555554322 1 3378899999999999999999999999988775444444433333333 234455565
Q ss_pred HHHHHHHHHHHHh
Q 025373 96 LIIREKLADLYES 108 (254)
Q Consensus 96 a~lr~~LA~i~E~ 108 (254)
+.-=..+|+....
T Consensus 116 A~~i~~lA~~~~~ 128 (225)
T 2yg9_A 116 VRTVQAAAAAAVS 128 (225)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5554555655543
No 202
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=27.04 E-value=1.5e+02 Score=23.37 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCC------CHHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 025373 18 IEQYKHILSSVISSN------DIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQP 86 (254)
Q Consensus 18 ~~~y~~ll~~i~~~~------~~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~i~~ 86 (254)
.+.++.+|.+.+++. |++.|..|+..++ ++-.|--...+|.-|...+.+-..+.+...-..+++.||.
T Consensus 38 l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lV-eek~Lek~~~vlk~l~rlv~~~~~~~W~~Ay~~I~~~VQ~ 111 (124)
T 3vu7_H 38 FNDVKTLLREWITTISDPMEEDILQVVKYCTDLI-EEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQV 111 (124)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 456777777777533 5667777777777 3445666666666666666666666777777777766653
No 203
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=26.73 E-value=56 Score=31.77 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI 143 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i 143 (254)
.+...|...|++.|++.+||++|..+-..+ -.++-+.++++.-|-
T Consensus 218 ~~~dLLWryy~k~~~~~~AA~VL~~LA~s~--~~i~L~~RIeyLsrA 262 (525)
T 3i5p_A 218 KISNILWVYYSRRSKFFESAEILYRLATSN--FDITLFERIEFLSRA 262 (525)
T ss_dssp CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS--SCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcccHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Confidence 357889999999999999999999887773 367777777764433
No 204
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=25.26 E-value=91 Score=29.66 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=40.9
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcchhHHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk 180 (254)
.|...|++-|+|.++-+.+.+ +. . ..|..+...|-+.|.|..|..+.+++ .++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~~-----pn--~------~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~ 151 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFING-----PN--N------AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNF 151 (449)
T ss_dssp ----------CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------------TCH
T ss_pred HHHHHHHHhCCHHHHHHHHcC-----Cc--H------HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhH
Confidence 356688899999998888764 11 1 28999999999999999999999977 366
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 181 VCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 181 ~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
.++|..+-.-.+|-+|-..|.....
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~~ 176 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKANS 176 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHcCC
Confidence 6777777777788888888877643
No 205
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.89 E-value=3.5e+02 Score=23.32 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcC--CcchHhHHHH-HHHHHHHhcC---C----ChHH---HHHHHHHHHHhhcC-cccchHHHHHHHHH
Q 025373 35 VQAKKFIDHMLSD--DVPLVVSRQL-LQTFAQELGR---L----EPET---QKEIANYTLAQIQP-RVVSFEEQVLIIRE 100 (254)
Q Consensus 35 ~~l~~~i~~~~~~--~v~lv~sR~~-l~~~~~~l~~---l----~~~~---~~~v~~~~L~~i~~-~~is~Eeq~a~lr~ 100 (254)
..++.+++.++.+ .++..-.|.+ +-.|+..+.+ | +.+. -.+=+-.+++.|.. -..-+|+..--|+.
T Consensus 42 rq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lTPLESAl~v~~~I~~e~~~lheei~~Llk~ 121 (211)
T 3bqo_A 42 RRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERITPLESALMIWGSIEKEHDKLHEEIQNLIKI 121 (211)
T ss_dssp HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHTTSCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3445555666633 4454444552 2334444332 3 2222 35556667777753 33567888888899
Q ss_pred HHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHH
Q 025373 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQI 143 (254)
Q Consensus 101 ~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i 143 (254)
+.--++-+.|.+.+|.++|..+==+++. .-..+-|+-.+|+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~-~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNS-HMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC------CCTTHHHHHHHHHT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCC-chHHHHHHHHHHHc
Confidence 9999999999999999999986555542 33445566555553
No 206
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.11 E-value=1.5e+02 Score=24.05 Aligned_cols=67 Identities=9% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCCH--HHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhhcCcccch
Q 025373 22 KHILSSVISSNDI--VQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE------PETQKEIANYTLAQIQPRVVSF 91 (254)
Q Consensus 22 ~~ll~~i~~~~~~--~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~l~------~~~~~~v~~~~L~~i~~~~is~ 91 (254)
+.+++.-+..++. +.+-..+.++.. +++.+.++...|...+..++ |....-+|.++-+.|.++.++.
T Consensus 47 ~~~I~~aldrk~~ere~~s~LL~~L~~---~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~ 121 (165)
T 2rg8_A 47 VLAVSLALEGKASHREMTSKLLSDLCG---TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCN 121 (165)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHBT---TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCH
Confidence 3344444444422 344445555432 67777777777766666552 5556777777777777777654
No 207
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=22.88 E-value=1.6e+02 Score=26.40 Aligned_cols=62 Identities=11% Similarity=-0.084 Sum_probs=39.2
Q ss_pred HHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 100 ~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
..++.++...|++.+|...+... -.+.+ .-...|.....+|...|++..|..+++|+-.+-.
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~ka------l~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADI------LNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHH------HHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHH------HHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 34455666666666665555431 01111 1245677778888888999999999999877654
No 208
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=21.52 E-value=3.2e+02 Score=21.94 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=53.5
Q ss_pred CccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcch-h-----HHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 025373 128 MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE-V-----LNLQYKVCYARILDLKRKFLEAALRYY 201 (254)
Q Consensus 128 ~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d~-~-----LkL~yk~~~ari~d~~rkFLeAa~rY~ 201 (254)
++++-.......++.....+...|++..|....+|+-.+.++..+. . ..-..+.-.+..+-.-.+|=+|-..|.
T Consensus 2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD 81 (159)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455556678889999999999999999999999999888762110 1 111144445566666677777777776
Q ss_pred HHHh
Q 025373 202 DISQ 205 (254)
Q Consensus 202 els~ 205 (254)
.--.
T Consensus 82 kAL~ 85 (159)
T 2hr2_A 82 KALH 85 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.45 E-value=1.1e+02 Score=22.61 Aligned_cols=58 Identities=24% Similarity=0.247 Sum_probs=36.4
Q ss_pred HHHHHHHHh----hccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhc----ccchhhHHHHHhhhhhh
Q 025373 100 EKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFL 166 (254)
Q Consensus 100 ~~LA~i~E~----~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le----~~D~~~Ae~~~nKas~~ 166 (254)
..|+.+|.. .+|+.+|.+.+..- .+.+ -..-+.....+|.. .+|+..|..|.+|+...
T Consensus 61 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A-a~~g--------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 61 RFLGDFYENGKYVKKDLRKAAQYYSKA-CGLN--------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHH-HHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHH-HcCC--------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 456677766 66777766665431 1111 12345667777777 77888888888887654
No 210
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.36 E-value=1.5e+02 Score=21.06 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 174 ~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
+|+-+.-..+|+|.-+||||.|.+.|-..+--
T Consensus 21 eLq~~~~~~~aki~e~krkl~eLsHRiLkvlv 52 (65)
T 3t97_B 21 ELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLI 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77788888899999999999999888766544
No 211
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=21.26 E-value=3e+02 Score=21.51 Aligned_cols=102 Identities=12% Similarity=-0.104 Sum_probs=63.9
Q ss_pred HHHHHHhhccHHHHHHHhccCCCCCCCccCChHH--H--------HHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCc
Q 025373 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTF--R--------LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (254)
Q Consensus 102 LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~--K--------~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~ 171 (254)
++..+...|++.+|...+..+--.-........- + .+..+.++++|+..+++..|....+++-...++..
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred cchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 3445556789999988887642221111111111 1 12336788999999999999999999988776532
Q ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 025373 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (254)
Q Consensus 172 d~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~~ 206 (254)
. .-.-....+.++....++-+|...|..+-..
T Consensus 182 --~-~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 182 --A-TRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp --H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred --c-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1 1233455778888888888888877777664
No 212
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=21.15 E-value=3.3e+02 Score=23.78 Aligned_cols=119 Identities=8% Similarity=0.156 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhcCCcchHhHHHHHHHHHHHhcC-----------CC-hHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Q 025373 34 IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGR-----------LE-PETQKEIANYTLAQIQPRVVSFEEQVLIIREK 101 (254)
Q Consensus 34 ~~~l~~~i~~~~~~~v~lv~sR~~l~~~~~~l~~-----------l~-~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~ 101 (254)
.+.+...|..+++.+++....+.++..++..+.+ .| ++....+....|+.. .+++ ++.-=..
T Consensus 113 ~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~~---g~g~---Ra~~I~~ 186 (290)
T 3i0w_A 113 QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEEC---TAGF---RAKYLKD 186 (290)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHHT---TCGG---GHHHHHH
T ss_pred CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHHc---CCch---HHHHHHH
Confidence 3678999999999999999999999999998754 23 444434444455542 2344 3433344
Q ss_pred HHHHHHhh---------ccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcc
Q 025373 102 LADLYESE---------QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (254)
Q Consensus 102 LA~i~E~~---------~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~ 168 (254)
+|+..... .+..++-+-|..|| .- | .|+.=++- ...|..-|..-..+++.|+.....
T Consensus 187 ~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lp--GI-G-----~~TA~~il--l~~lg~pd~fpvD~~v~r~~~rl~ 252 (290)
T 3i0w_A 187 TVDRIYNGELNLEYIKSLNDNECHEELKKFM--GV-G-----PQVADCIM--LFSMQKYSAFPVDTWVKKAMMSLY 252 (290)
T ss_dssp HHHHHHTTSSCHHHHHHSCHHHHHHHHTTST--TC-C-----HHHHHHHH--HHHHCCTTCCCCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHhcCCHHHHHHHHHhCC--Cc-C-----HHHHHHHH--HHhCCCCCcceecHHHHHHHHHhc
Confidence 55544332 25667777777654 22 2 23333322 234666554444888888877654
No 213
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=20.86 E-value=2.7e+02 Score=20.92 Aligned_cols=47 Identities=17% Similarity=0.401 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCC-CHHHHHHHHHHHhc-CCcchHhHHHHHHHHHHHhcCC
Q 025373 20 QYKHILSSVISSN-DIVQAKKFIDHMLS-DDVPLVVSRQLLQTFAQELGRL 68 (254)
Q Consensus 20 ~y~~ll~~i~~~~-~~~~l~~~i~~~~~-~~v~lv~sR~~l~~~~~~l~~l 68 (254)
.-..+++++++.+ |+.+...++..+++ +.|. .||.--+-|.++++++
T Consensus 6 ~an~IVqQlv~aGadLa~~rtmlrn~m~g~~va--lsr~eq~Il~qHFPnM 54 (94)
T 3tjy_A 6 RANRIVQQLVEAGADLANIRTMFRNMLRGEEMI--LSRAEQNVFLQHFPDM 54 (94)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHHCTTH
T ss_pred cHHHHHHHHHHhcccHHHHHHHHHHHHcCCchh--hhHHHHHHHHHHCccc
Confidence 3467888998877 99999999999884 4444 4999999999999886
No 214
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=20.64 E-value=6e+02 Score=24.79 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHh
Q 025373 68 LEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY 147 (254)
Q Consensus 68 l~~~~~~~v~~~~L~~i~~~~is~Eeq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~ 147 (254)
+.++..++++.. .=|.++.+|...+...-..-.+=..+|+-|.+ ..-..+.+|+.-|.+-|
T Consensus 391 ~~De~~eeI~dl----------i~ese~~~ik~i~~s~i~sL~eKi~~AE~~~~------k~e~~~n~~a~~yA~kA--- 451 (526)
T 2wb7_A 391 MKDQDVKNLIDL----------YKKKDREKINATTKAMINSLQEKIDEAEQLLA------KAKGMNNENAIEYAQGA--- 451 (526)
T ss_dssp SCHHHHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTTCHHHHHHHHHH---
T ss_pred cchhhHHHHHHH----------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhccCCHHHHHHHHHH---
Q ss_pred hcccchhhHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 025373 148 LEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYY 201 (254)
Q Consensus 148 Le~~D~~~Ae~~~nKas~~~~~~~d~~LkL~yk~~~ari~d~~rkFLeAa~rY~ 201 (254)
-+++..|-.|++|++ ..+|.+.-+.|...-=.+--.-+-|++||++|+
T Consensus 452 --i~~Y~~Ai~~L~k~~----~tdd~~~v~~~~~~ak~yE~aGDyy~~AA~k~~ 499 (526)
T 2wb7_A 452 --IDEYKAAINDLQKAA----QQDDYQMFLNYLNAAKKHEMAGDYYVNAARKAL 499 (526)
T ss_dssp --HHHHHHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhhh----ccCCHHHHHHHHHHhhhhhhccHHHHHHHHHHh
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.53 E-value=2.8e+02 Score=25.85 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhcCCc--chHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-hcCcccchHHHH
Q 025373 19 EQYKHILSSVISSNDIVQAKKFIDHMLSDDV--PLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQ-IQPRVVSFEEQV 95 (254)
Q Consensus 19 ~~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v--~lv~sR~~l~~~~~~l~~l~~~~~~~v~~~~L~~-i~~~~is~Eeq~ 95 (254)
..|..++.-....++++.-..+++.|....+ .+++--.++..++.. -..+...++-....+. +.|..+.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~---g~~~~A~~l~~~M~~~G~~Pd~~t----- 177 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK---GDADKAYEVDAHMVESEVVPEEPE----- 177 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTCCCCHHH-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCCHHH-----
Confidence 4578888887777788777778888876554 333334444444421 1233333333333322 2232222
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHhccCC
Q 025373 96 LIIREKLADLYESEQQWSKAAQMLSGID 123 (254)
Q Consensus 96 a~lr~~LA~i~E~~~d~~~AA~vL~~I~ 123 (254)
-..|-+.|.+.|++.+|-++|..+.
T Consensus 178 ---y~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 178 ---LAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 2457788899999999999999875
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.41 E-value=5.2e+02 Score=23.97 Aligned_cols=169 Identities=11% Similarity=-0.040 Sum_probs=101.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCc-chHhHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHhhcCcccchH
Q 025373 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDV-PLVVSRQLLQTFAQELGRL------EPETQKEIANYTLAQIQPRVVSFE 92 (254)
Q Consensus 20 ~y~~ll~~i~~~~~~~~l~~~i~~~~~~~v-~lv~sR~~l~~~~~~l~~l------~~~~~~~v~~~~L~~i~~~~is~E 92 (254)
.|..+|+..-..++++.-..+++.|...++ |-+++= +.++..+... ......+-+..+++.+....+.-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~ty---n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHY---NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHH---HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 367777777777889877778888876655 333332 3333333221 112223334444444432222111
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHHHHHHHHHHHHhhcccchhhHHHHHhhhhhhcccCcc
Q 025373 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (254)
Q Consensus 93 eq~a~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K~~~~l~i~rL~Le~~D~~~Ae~~~nKas~~~~~~~d 172 (254)
. ..-..|-..|.+.|++.+|-+++.++.-... .+ .+..|--.+.-|...+++..|.....+....=... |
T Consensus 105 ~---~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d 174 (501)
T 4g26_A 105 E---ATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QP--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-E 174 (501)
T ss_dssp H---HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-C
T ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-C
Confidence 1 1124578889999999999999998753322 11 24578889999999999999999888764321111 1
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 025373 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (254)
Q Consensus 173 ~~LkL~yk~~~ari~d~~rkFLeAa~rY~els~ 205 (254)
..-+..+++.+-..+++=+|-.-+.++-.
T Consensus 175 ----~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 ----EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 22345556666666677677666666655
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=20.30 E-value=1.3e+02 Score=28.31 Aligned_cols=58 Identities=12% Similarity=0.010 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhccHHHHHHHhccCCCCCCCccCChHHH-------HHHHHHHHHHhhcccchhhHHHHH
Q 025373 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR-------LSKCVQIARLYLEDDDAVNAEAFI 160 (254)
Q Consensus 97 ~lr~~LA~i~E~~~d~~~AA~vL~~I~lEt~~~~~s~~~K-------~~~~l~i~rL~Le~~D~~~Ae~~~ 160 (254)
.+=+.||+.+.+.|++..|.+++..+ +.++.-.. .+...+++++....+++..|+...
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~------~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA------HDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------TCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc------cChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 34578899999999999999888763 11111111 123345555555666666665443
Done!