BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025374
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 58 WPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG--DAFWVLRIIGY 115
WP P ++ EY L+ K+ + +++ LG P E G + ++I Y
Sbjct: 158 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYY 217
Query: 116 PGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVC 175
P +PE +G AHTD LT + + + L++ G+W++A +P + V
Sbjct: 218 PKCP------QPELALGVEAHTDVSALTFILHNM-VPGLQLF-YEGKWVTAKCVPDSIVM 269
Query: 176 NIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAV 219
+IGD L+I SNG Y+S LHR + + K R+ A F E D V
Sbjct: 270 HIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 58 WPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAG--DAFWVLRIIGY 115
WP P ++ EY L+ K+ + +++ LG P E G + ++I Y
Sbjct: 157 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYY 216
Query: 116 PGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVC 175
P +PE +G AHTD LT + + + L++ G+W++A +P + V
Sbjct: 217 PKCP------QPELALGVEAHTDVSALTFILHNM-VPGLQLF-YEGKWVTAKCVPDSIVM 268
Query: 176 NIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAV 219
+IGD L+I SNG Y+S LHR + + K R+ A F E D V
Sbjct: 269 HIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 312
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 126 KPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYS 185
KP+ G AHTD G + L+ QDD ++ L++ G+WI PP + V N+GD L++ +
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK-DGQWIDVPPXRHSIVVNLGDQLEVIT 225
Query: 186 NGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAVEPLD-ICKQRTGETKQ 234
NG Y+S HRV+ R +A FY DA + P + ++ E KQ
Sbjct: 226 NGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQ 275
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 58 WPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVL--RIIGY 115
WP P ++ EY L+ K+ + +++ LG P E G +L +I Y
Sbjct: 158 WPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYY 217
Query: 116 PGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVC 175
P +PE +G AHTD LT + + + L++ G+W++A +P + V
Sbjct: 218 PKCP------QPELALGVEAHTDVSALTFILHNX-VPGLQLF-YEGKWVTAKCVPDSIVX 269
Query: 176 NIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYETNFDAAV 219
+IGD L+I SNG Y+S LHR + + K R+ A F E D V
Sbjct: 270 HIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 56 NQWPLNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSPFEFEGVRAGDAFWVLRIIGY 115
N WP P F+ + N K++ IA L +F D VLR++ Y
Sbjct: 118 NVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLE-RDFFKPTVQDGNSVLRLLHY 176
Query: 116 PGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVC 175
P + K + GAH D +TL+ ++ LEV + G+W+ P PG V
Sbjct: 177 PPIP------KDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVI 229
Query: 176 NIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAY 209
NIGD L+ +N + ST+HRVVN P+ R Y
Sbjct: 230 NIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRY 263
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 109 VLRIIGYPGLSGAKDQKKPENNIGCGAHTDYGLLTLVNQDDDITALEVRNMSGEWISAPP 168
+LRI+ YP +G ++ I AH D L+T++ ++ L+V+ G W+ P
Sbjct: 151 LLRILHYPPXTGDEEX----GAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPS 205
Query: 169 IPGTFVCNIGDMLKIYSNGLYESTLHRVVN----SSPKYRVCVAYF 210
G + NIGD L+ S+G + ST HRV+N K R+ + F
Sbjct: 206 DFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLF 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 55 CNQWP--LNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSP-FEFEGVRAGDAFWVLR 111
N WP P F+ E+Y LS +++G ALALG F + D +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 112 IIGYPGLSGAKDQKKPENNIGCGA---------HTDYGLLTLVNQDDDITALEVRNMSGE 162
+I YP L PE I A H D L+T++ Q ++ L+V +G
Sbjct: 186 LIRYPYLD-----PYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGY 239
Query: 163 WISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRV--VNSSPKYRVCVAYFYETNFDAAVE 220
G ++ N G + +N Y++ +HRV VN+ R + +F +D+ ++
Sbjct: 240 QDIEADDTG-YLINCGSYMAHLTNNYYKAPIHRVKWVNAE---RQSLPFFVNLGYDSVID 295
Query: 221 PLD 223
P D
Sbjct: 296 PFD 298
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 55 CNQWP--LNPPNFRALMEEYVNLCTDLSRKIMRGIALALGGSP-FEFEGVRAGDAFWVLR 111
N WP P F+ E+Y LS +++G ALALG F + D +
Sbjct: 126 VNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVV 185
Query: 112 IIGYPGLSGAKDQKKPENNIGCGA---------HTDYGLLTLVNQDDDITALEVRNMSGE 162
+I YP L PE I A H D L+T++ Q ++ L+V +G
Sbjct: 186 LIRYPYLD-----PYPEAAIKTAADGTKLSFEWHEDVSLITVLYQ-SNVQNLQVETAAGY 239
Query: 163 WISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRV--VNSSPKYRVCVAYFYETNFDAAVE 220
G ++ N G + +N Y++ +HRV VN+ R + +F +D+ ++
Sbjct: 240 QDIEADDTG-YLINCGSYMAHLTNNYYKAPIHRVKWVNAE---RQSLPFFVNLGYDSVID 295
Query: 221 PLD 223
P D
Sbjct: 296 PFD 298
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 138 DYGLLTLVNQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRV- 196
D G++T++ QD D E+ ++G + P P CN DM Y LH V
Sbjct: 195 DLGMVTILVQDTDTALKELEKVTGIQLLNTPAPLPTSCNPSDMSHGYVTVKPRVRLHFVE 254
Query: 197 VNSSPKYRVCVAY 209
+ S P +C +
Sbjct: 255 LGSGPAVCLCHGF 267
>pdb|1NY7|2 Chain 2, Cowpea Mosaic Virus (Cpmv)
pdb|2BFU|L Chain L, X-Ray Structure Of Cpmv Top Component
Length = 369
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 154 LEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSNGLYESTLHRVVNSSPKYRVCVAYFYET 213
EV MS +I A TF+ G++ + G YES HR+V + C F +
Sbjct: 248 FEVTKMSSPYIKATV---TFLIAFGNLSDAF--GFYESFPHRIVQFAEVEEKCTLVFSQQ 302
Query: 214 NFDAA 218
F A
Sbjct: 303 EFVTA 307
>pdb|4AQ1|C Chain C, Structure Of The Sbsb S-Layer Protein Of Geobacillus
Stearothermophilus Pv72p2 In Complex With Nanobody Kb6
Length = 892
Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 146 NQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSN 186
NQ+ ITA ++N+ GE +A + G FV ++ D + + N
Sbjct: 234 NQEYTITATGIKNLKGE--TAKELTGKFVWSVQDAVTVALN 272
>pdb|4AQ1|A Chain A, Structure Of The Sbsb S-Layer Protein Of Geobacillus
Stearothermophilus Pv72p2 In Complex With Nanobody Kb6
Length = 892
Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 146 NQDDDITALEVRNMSGEWISAPPIPGTFVCNIGDMLKIYSN 186
NQ+ ITA ++N+ GE +A + G FV ++ D + + N
Sbjct: 234 NQEYTITATGIKNLKGE--TAKELTGKFVWSVQDAVTVALN 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,643,126
Number of Sequences: 62578
Number of extensions: 328306
Number of successful extensions: 733
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 12
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)