Query 025375
Match_columns 253
No_of_seqs 264 out of 1083
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 6E-71 1.3E-75 522.4 24.0 252 1-252 1-263 (408)
2 KOG2288 Galactosyltransferases 100.0 2.5E-35 5.5E-40 264.0 11.9 127 125-252 8-135 (274)
3 PF13334 DUF4094: Domain of un 100.0 5.7E-32 1.2E-36 211.7 6.8 85 17-102 1-94 (95)
4 PLN03133 beta-1,3-galactosyltr 100.0 2E-30 4.4E-35 258.1 15.1 120 124-250 381-500 (636)
5 KOG2287 Galactosyltransferases 100.0 3.6E-29 7.7E-34 235.0 13.8 118 127-250 94-212 (349)
6 PF01762 Galactosyl_T: Galacto 100.0 2.2E-28 4.8E-33 210.3 10.2 104 142-250 1-105 (195)
7 PTZ00210 UDP-GlcNAc-dependent 99.9 5.2E-23 1.1E-27 193.9 11.0 128 123-250 75-224 (382)
8 PF02434 Fringe: Fringe-like; 98.6 5.4E-08 1.2E-12 88.0 6.5 106 128-252 6-113 (252)
9 KOG2246 Galactosyltransferases 98.5 4.3E-07 9.4E-12 86.6 7.6 102 125-252 88-195 (364)
10 PLN03153 hypothetical protein; 96.4 0.021 4.6E-07 57.0 9.8 29 223-251 208-236 (537)
11 PF13641 Glyco_tranf_2_3: Glyc 88.5 2.8 6.1E-05 35.4 8.1 104 130-249 3-110 (228)
12 cd04192 GT_2_like_e Subfamily 84.8 18 0.00039 30.1 11.0 77 167-249 29-106 (229)
13 TIGR03472 HpnI hopanoid biosyn 82.0 39 0.00085 31.8 13.2 107 129-249 42-150 (373)
14 TIGR03469 HonB hopene-associat 79.1 46 0.00099 31.5 12.7 81 166-249 70-157 (384)
15 PF00535 Glycos_transf_2: Glyc 78.0 29 0.00063 26.6 12.1 75 166-248 27-101 (169)
16 cd06434 GT2_HAS Hyaluronan syn 77.9 23 0.0005 29.8 9.4 74 166-249 28-101 (235)
17 PRK11204 N-glycosyltransferase 77.8 56 0.0012 30.9 12.8 63 182-249 96-158 (420)
18 cd06423 CESA_like CESA_like is 77.5 21 0.00047 27.3 8.4 75 166-248 26-101 (180)
19 cd04185 GT_2_like_b Subfamily 75.9 43 0.00093 27.6 10.7 76 167-248 27-102 (202)
20 cd02525 Succinoglycan_BP_ExoA 71.4 61 0.0013 27.2 11.9 76 165-249 30-105 (249)
21 cd04186 GT_2_like_c Subfamily 69.1 52 0.0011 25.5 10.5 25 224-248 73-97 (166)
22 COG4092 Predicted glycosyltran 66.5 28 0.0006 32.9 7.5 81 163-248 35-117 (346)
23 KOG3708 Uncharacterized conser 66.3 11 0.00023 38.4 5.2 66 168-248 52-120 (681)
24 cd06421 CESA_CelA_like CESA_Ce 64.9 39 0.00084 28.3 7.8 32 218-249 77-108 (234)
25 cd04179 DPM_DPG-synthase_like 62.3 56 0.0012 26.2 8.0 76 166-249 28-103 (185)
26 cd04187 DPM1_like_bac Bacteria 62.1 74 0.0016 25.7 8.8 76 166-249 29-104 (181)
27 TIGR01556 rhamnosyltran L-rham 61.9 57 0.0012 28.8 8.7 55 192-248 42-96 (281)
28 cd06427 CESA_like_2 CESA_like_ 57.5 1.2E+02 0.0027 25.9 11.9 34 216-249 75-108 (241)
29 cd06439 CESA_like_1 CESA_like_ 55.3 1.3E+02 0.0029 25.6 13.2 33 217-249 101-133 (251)
30 PF13506 Glyco_transf_21: Glyc 55.2 28 0.00061 29.5 5.2 40 210-249 16-55 (175)
31 cd02526 GT2_RfbF_like RfbF is 54.9 72 0.0016 26.8 7.8 52 194-247 46-97 (237)
32 cd04195 GT2_AmsE_like GT2_AmsE 53.5 1.2E+02 0.0026 24.7 11.0 63 181-249 42-104 (201)
33 cd06435 CESA_NdvC_like NdvC_li 50.9 1.5E+02 0.0033 24.9 10.1 34 216-249 73-108 (236)
34 cd04184 GT2_RfbC_Mx_like Myxoc 50.8 1.3E+02 0.0029 24.4 12.7 34 217-250 75-108 (202)
35 PF03452 Anp1: Anp1; InterPro 49.5 1.1E+02 0.0023 28.6 8.4 86 165-251 55-168 (269)
36 cd04188 DPG_synthase DPG_synth 47.7 1.6E+02 0.0035 24.4 8.8 77 165-249 29-106 (211)
37 cd04196 GT_2_like_d Subfamily 47.7 1.5E+02 0.0033 24.1 9.0 76 166-249 27-103 (214)
38 cd02520 Glucosylceramide_synth 47.6 1.6E+02 0.0035 24.3 12.5 79 166-249 30-110 (196)
39 PRK14583 hmsR N-glycosyltransf 46.8 2.8E+02 0.006 26.8 13.9 75 166-248 104-178 (444)
40 cd00761 Glyco_tranf_GTA_type G 46.4 1.2E+02 0.0025 22.4 8.7 29 218-246 70-98 (156)
41 PF04666 Glyco_transf_54: N-Ac 43.5 1E+02 0.0022 28.9 7.4 117 125-244 49-188 (297)
42 PF04508 Pox_A_type_inc: Viral 41.3 22 0.00047 21.1 1.6 20 83-102 3-22 (23)
43 cd06442 DPM1_like DPM1_like re 40.3 2E+02 0.0044 23.7 8.2 26 224-249 77-102 (224)
44 cd02510 pp-GalNAc-T pp-GalNAc- 39.0 2.8E+02 0.0062 24.7 11.0 31 219-249 77-107 (299)
45 PRK10714 undecaprenyl phosphat 38.7 2.4E+02 0.0051 26.2 9.1 76 166-249 38-114 (325)
46 PF10111 Glyco_tranf_2_2: Glyc 38.4 2.9E+02 0.0064 24.7 12.2 78 164-248 32-111 (281)
47 PF06072 Herpes_US9: Alphaherp 37.3 32 0.00069 25.0 2.3 17 21-37 42-58 (60)
48 TIGR03111 glyc2_xrt_Gpos1 puta 37.1 3.9E+02 0.0085 25.8 13.3 33 216-248 122-154 (439)
49 PLN02726 dolichyl-phosphate be 35.0 2.9E+02 0.0064 23.7 12.1 76 166-249 40-117 (243)
50 cd06433 GT_2_WfgS_like WfgS an 34.3 56 0.0012 26.2 3.7 31 217-247 67-97 (202)
51 smart00786 SHR3_chaperone ER m 33.5 26 0.00056 31.2 1.7 29 17-45 6-40 (196)
52 PF08229 SHR3_chaperone: ER me 33.0 18 0.00039 32.1 0.6 31 16-46 5-41 (196)
53 cd06420 GT2_Chondriotin_Pol_N 32.4 64 0.0014 25.8 3.8 33 218-250 72-104 (182)
54 PHA03289 envelope glycoprotein 31.1 96 0.0021 29.8 5.1 66 21-96 275-352 (352)
55 PF03071 GNT-I: GNT-I family; 30.9 2.8E+02 0.0061 27.6 8.5 59 186-244 137-210 (434)
56 PF09964 DUF2198: Uncharacteri 30.7 32 0.00069 26.1 1.5 22 18-39 46-67 (74)
57 PF03742 PetN: PetN ; InterPr 29.9 54 0.0012 20.5 2.2 23 16-38 4-26 (29)
58 PF04786 Baculo_DNA_bind: ssDN 28.8 52 0.0011 30.1 2.9 47 193-243 94-142 (248)
59 PF05308 Mito_fiss_reg: Mitoch 27.6 28 0.00061 32.0 0.9 19 85-103 119-137 (253)
60 PF11772 EpuA: DNA-directed RN 27.5 53 0.0011 22.7 2.0 16 21-36 4-19 (47)
61 cd04191 Glucan_BSP_ModH Glucan 26.8 4.6E+02 0.01 23.4 9.7 26 224-249 94-119 (254)
62 cd06532 Glyco_transf_25 Glycos 26.0 3.3E+02 0.0072 21.5 7.2 90 132-241 2-98 (128)
63 PF13712 Glyco_tranf_2_5: Glyc 25.9 84 0.0018 27.6 3.6 32 216-247 45-76 (217)
64 PRK10018 putative glycosyl tra 24.9 5.3E+02 0.011 23.5 12.5 31 218-248 78-108 (279)
65 PF01755 Glyco_transf_25: Glyc 24.0 4.2E+02 0.0092 22.0 8.9 93 132-241 4-101 (200)
66 PF04846 Herpes_pp38: Herpesvi 24.0 57 0.0012 24.0 1.8 21 16-36 15-35 (63)
67 PF13704 Glyco_tranf_2_4: Glyc 23.8 2.9E+02 0.0064 20.1 7.6 48 194-242 40-88 (97)
68 PLN03181 glycosyltransferase; 22.6 4.1E+02 0.009 26.6 7.9 92 144-238 108-211 (453)
69 PRK05454 glucosyltransferase M 22.0 9.4E+02 0.02 25.3 12.0 116 125-248 121-243 (691)
70 cd02522 GT_2_like_a GT_2_like_ 21.8 1.2E+02 0.0027 25.0 3.7 30 219-248 66-95 (221)
71 cd06438 EpsO_like EpsO protein 21.7 4.4E+02 0.0094 21.3 9.0 36 214-249 69-105 (183)
72 TIGR02148 Fibro_Slime fibro-sl 21.6 50 0.0011 25.9 1.2 17 226-242 20-36 (90)
73 PF13758 Prefoldin_3: Prefoldi 21.4 98 0.0021 24.7 2.8 28 71-98 68-99 (99)
74 PF03490 Varsurf_PPLC: Variant 21.2 59 0.0013 22.9 1.3 26 149-177 9-34 (51)
75 PRK14747 cytochrome b6-f compl 20.2 42 0.0009 21.0 0.4 23 16-38 4-26 (29)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=6e-71 Score=522.41 Aligned_cols=252 Identities=60% Similarity=0.959 Sum_probs=228.5
Q ss_pred CCccccCCCcccCCCcchhHHHHHHHHHHHhHHhhcccCCCCCcccchhccccc--------ccCcchhh---hhhcccc
Q 025375 1 MSFKSTGGEFASRNLIPRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISKT--------EEIENPEL---KAVKHES 69 (253)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~w~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~ 69 (253)
||.|+||+++++++.||+||+++||++|||+|++||||||..||+++..+++.+ .+||++|+ |..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 80 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDS 80 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccch
Confidence 899999999999999999999999999999999999999999998887765432 27899876 5556799
Q ss_pred chhhHHHHhHHHHHHHHhhhhhhhhhhhhhhhhccccccCCCCCCCCCCCCCCCCCCceeEEEEEeCCCCChHHHHHHHH
Q 025375 70 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAERDSVSLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRA 149 (253)
Q Consensus 70 ~~~~~~v~~t~~~~~~~~k~i~~lemela~a~~~~~~~~~~~~~~~~~~~~~~~~~~k~~lvI~V~Sa~~n~~rR~aIR~ 149 (253)
+|||+||++||+|||+|||+|++||||||+||+.|..+.++.|.+++....+...++++++||+|+|+|+|++||++||+
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 81 KDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred hHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999977777777776544444455668889999999999999999999999
Q ss_pred hhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEE
Q 025375 150 TWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFY 229 (253)
Q Consensus 150 TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~ 229 (253)
|||++++.+.+++.+.+|+++||||++.++++.++++|++|+++|||||++||+|+|.|||.||+++|+||..+|+|+||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99998877777777889999999999987678899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEehHHHHHHHhhccC
Q 025375 230 IKVDDDVHVNLGKETFYLVLHCI 252 (253)
Q Consensus 230 lKvDDDvfVnl~~L~~~L~~~~~ 252 (253)
+|+|||+|||+++|+.+|++++.
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~ 263 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRK 263 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCC
Confidence 99999999999999999987753
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-35 Score=264.05 Aligned_cols=127 Identities=63% Similarity=0.954 Sum_probs=123.1
Q ss_pred CCceeEEEEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEee-cc
Q 025375 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 203 (253)
Q Consensus 125 ~~k~~lvI~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld-~~ 203 (253)
++++++||+|+|+|++.+||+++|+||||+++.+++++++++|.++|+||+ ++.+++.+++|++|+++|+|+|++| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 788999999999999999999999999999999999999999999999999 4468999999999999999999999 99
Q ss_pred ccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhhccC
Q 025375 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVLHCI 252 (253)
Q Consensus 204 DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 252 (253)
|+|++||.||+.+|.||..+|+++||+|+|||+|||++.|...|++|++
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~ 135 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERS 135 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999986
No 3
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.97 E-value=5.7e-32 Score=211.72 Aligned_cols=85 Identities=42% Similarity=0.735 Sum_probs=74.8
Q ss_pred chhHHHHHHHHHHHhHHhhcccCCCCCcccchhcccc-----c----ccCcchhhhhhccccchhhHHHHhHHHHHHHHh
Q 025375 17 PRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISK-----T----EEIENPELKAVKHESNNNTEKLAMVEQAIQSQD 87 (253)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~r~w~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~ 87 (253)
|+||+++||+||||+|+|||||||..||+++...... + .+||++|+ ..+.+++++|+||+|||+|||+||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~Ld 79 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLD 79 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999888774321 1 27999865 235689999999999999999999
Q ss_pred hhhhhhhhhhhhhhh
Q 025375 88 KRLDGLKTKITAVRA 102 (253)
Q Consensus 88 k~i~~lemela~a~~ 102 (253)
|+||+|||||||||+
T Consensus 80 KtIS~LEMELAaARa 94 (95)
T PF13334_consen 80 KTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999998
No 4
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.97 E-value=2e-30 Score=258.07 Aligned_cols=120 Identities=23% Similarity=0.339 Sum_probs=109.3
Q ss_pred CCCceeEEEEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeecc
Q 025375 124 LKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI 203 (253)
Q Consensus 124 ~~~k~~lvI~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~ 203 (253)
++++++|+|+|+|+|+|++||++||+|||+... .....+.++|+||.+. ++.++..|++|+++|||||++||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999998531 1245699999999986 467899999999999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 204 DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
|+|+|||+||++++.|+..|++++||+|+|||+|||+++|+.+|..+
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~ 500 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRT 500 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999754
No 5
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.6e-29 Score=235.05 Aligned_cols=118 Identities=26% Similarity=0.410 Sum_probs=108.8
Q ss_pred ceeEEEEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccC
Q 025375 127 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (253)
Q Consensus 127 k~~lvI~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY 206 (253)
.++++++|.|++++++||++||+|||+... ..+..++++|++|.+++.+ .+++.+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999752 3467799999999998543 6689999999999999999999999
Q ss_pred CChhHHHHHHHHHHhh-CCCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 207 ~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
.|||+|+++++.|+.. |++++|++|+|||||||+++|+.+|..+
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~ 212 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKL 212 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhcc
Confidence 9999999999999875 8899999999999999999999999987
No 6
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.95 E-value=2.2e-28 Score=210.31 Aligned_cols=104 Identities=31% Similarity=0.440 Sum_probs=94.1
Q ss_pred HHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHh
Q 025375 142 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 221 (253)
Q Consensus 142 ~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~ 221 (253)
+||++||+||++... ....++.++||+|.+++.+..++..|.+|+++|||||++||.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999752 235789999999999865678889999999999999999999999999999999999997
Q ss_pred hC-CCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 222 SM-WDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 222 ~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
++ ++++||+|+|||+|||+++|.++|.++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~ 105 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSL 105 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhc
Confidence 64 459999999999999999999999876
No 7
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.89 E-value=5.2e-23 Score=193.86 Aligned_cols=128 Identities=19% Similarity=0.282 Sum_probs=110.8
Q ss_pred CCCCceeEEEEEeCCCCC--hHHHHHHHHhhcCCcchh-hhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEE
Q 025375 123 MLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGEKR-KMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLR 199 (253)
Q Consensus 123 ~~~~k~~lvI~V~Sa~~n--~~rR~aIR~TW~~~~~~l-~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ 199 (253)
...++.++++||.|..++ +.||++.|+||+...... +...-...+.++|++|.+++.+-+.+.++.+|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 447789999999999998 999999999999875432 22212345888999999998778999999999999999999
Q ss_pred eec------------------cccCCChhHHHHHHHHHHhh-CCCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 200 LEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 200 ld~------------------~DsY~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
+|| .|+|.++|.||+++|+||.. |++++|++|+|||+|||+|.++++|+..
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~ 224 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM 224 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC
Confidence 999 67778899999999999975 6699999999999999999999999643
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=98.63 E-value=5.4e-08 Score=88.00 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=56.4
Q ss_pred eeEEEEEeCCCCChHHH-HHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccC
Q 025375 128 YFMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (253)
Q Consensus 128 ~~lvI~V~Sa~~n~~rR-~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY 206 (253)
-.++|+|+|++.+.+.| .+|++||++.- ....++|.- . .+..+..+ .-.+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~---------~~~~~ifsd--~------~d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRC---------NKQTFIFSD--A------EDPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGS---------GGGEEEEES--S--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhc---------CCceEEecC--c------cccccccc--cccccccCCCcchh
Confidence 46889999999876655 89999999853 122222321 1 12333333 22345444455444
Q ss_pred CChhHHHHHHHHHHh-hCCCccEEEEeCCCeEEehHHHHHHHhhccC
Q 025375 207 LELSAKTKTYFATAV-SMWDAEFYIKVDDDVHVNLGKETFYLVLHCI 252 (253)
Q Consensus 207 ~nLt~Ktl~~f~wa~-~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 252 (253)
....++.++.+.+.. ...+++|++++|||+||++++|..+|..+.+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~ 113 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDP 113 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-T
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCC
Confidence 444444444444422 2357899999999999999999999998654
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.45 E-value=4.3e-07 Score=86.57 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=79.7
Q ss_pred CCceeEEEEEeCCCCChHHH-HHHHHhhcCCcchhhhhhccCceEEEEEe---ecCCCCCcchHHHHHHHhhhCCCeEEe
Q 025375 125 KRKYFMVIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGDFLRL 200 (253)
Q Consensus 125 ~~k~~lvI~V~Sa~~n~~rR-~aIR~TW~~~~~~l~kL~~~~~i~v~FVv---G~s~~~~~~~~~~I~~E~~~ygDIL~l 200 (253)
.++..+++.|.|++.+..-| +.+-+||++.-+ +..|+- .... ..+ ..|..
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-----------~~~f~s~~~s~~~--------------~~f-~~v~~ 141 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-----------KGIFFSPTLSKDD--------------SRF-PTVYY 141 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC-----------cceecCccCCCCC--------------CcC-ceeec
Confidence 66789999999999888766 699999997421 223332 2221 112 24478
Q ss_pred eccccCCChhHHHHHHHHHHhh--CCCccEEEEeCCCeEEehHHHHHHHhhccC
Q 025375 201 EHIEGYLELSAKTKTYFATAVS--MWDAEFYIKVDDDVHVNLGKETFYLVLHCI 252 (253)
Q Consensus 201 d~~DsY~nLt~Ktl~~f~wa~~--~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 252 (253)
+..|+|+++..||..+|++... -.+++|++|.|||+|+.++||..+|..+.+
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp 195 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDP 195 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCC
Confidence 8999999999999999999863 358999999999999999999999998764
No 10
>PLN03153 hypothetical protein; Provisional
Probab=96.39 E-value=0.021 Score=57.01 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCCccEEEEeCCCeEEehHHHHHHHhhcc
Q 025375 223 MWDAEFYIKVDDDVHVNLGKETFYLVLHC 251 (253)
Q Consensus 223 ~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (253)
.++++||+++|||+|+.+++|+..|..+.
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YD 236 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYD 236 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcC
Confidence 57999999999999999999999998865
No 11
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=88.45 E-value=2.8 Score=35.42 Aligned_cols=104 Identities=11% Similarity=0.034 Sum_probs=49.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCe--EEeeccccCC
Q 025375 130 MVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF--LRLEHIEGYL 207 (253)
Q Consensus 130 lvI~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDI--L~ld~~DsY~ 207 (253)
+.|+|.+......-++.++.--.. . ...+.++++...+. +.....+++-...|... -.+... .
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~--------~-~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQ--------D-YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTS--------H-HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcC--------C-CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---C
Confidence 445555544434444555444422 1 12366666664443 23334455555566542 223222 2
Q ss_pred Chh--HHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 208 ELS--AKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 208 nLt--~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
|.. .|.- .+.++....+.+|++.+|||+.+.++.|..++..
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~ 110 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAA 110 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHH
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHH
Confidence 332 2333 3455555557999999999999999888877664
No 12
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.84 E-value=18 Score=30.10 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=44.9
Q ss_pred eEEEEEeecCCCCCcchHHHHH-HHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 167 IIIRFVIGHSATSGGILDKAID-AEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 167 i~v~FVvG~s~~~~~~~~~~I~-~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
+.++.|-..+. +.....+. .....+..+..++..+. .+. .|. .++.++......+|++.+|+|..+.++.|..
T Consensus 29 ~eiivvdd~s~---d~t~~~~~~~~~~~~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST---DGTVQILEFAAAKPNFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC---cChHHHHHHHHhCCCcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 66666665543 22333444 22222334555655442 222 222 2345555556789999999999999888877
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
++..
T Consensus 103 l~~~ 106 (229)
T cd04192 103 FVAF 106 (229)
T ss_pred HHHH
Confidence 7763
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=82.01 E-value=39 Score=31.78 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCC--eEEeeccccC
Q 025375 129 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGY 206 (253)
Q Consensus 129 ~lvI~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygD--IL~ld~~DsY 206 (253)
.+-|+|.+.-....-.+.++ +...+. -..+.++|+...+. +.....+++=.+.|.+ +..+.-.+ -
T Consensus 42 ~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~~~~-~ 108 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVIDAR-R 108 (373)
T ss_pred CeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEECCC-C
Confidence 35555555444333444553 333321 12477777766553 2222333333455666 32232111 1
Q ss_pred CChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 207 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 207 ~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
.....|.-.... +....+.+|++.+|+|+.+.++.|...+..
T Consensus 109 ~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 109 HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHH
Confidence 223356544333 344457899999999999999888776654
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=79.13 E-value=46 Score=31.51 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=44.7
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCC---CeEEeeccccCCChhHHHH---HHHHHHhh-CCCccEEEEeCCCeEE
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELSAKTK---TYFATAVS-MWDAEFYIKVDDDVHV 238 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~yg---DIL~ld~~DsY~nLt~Ktl---~~f~wa~~-~~~a~F~lKvDDDvfV 238 (253)
.+.+++|-..|.+ .....+++=.++|. .+..+...+.-.+-..|.. .+++.+.. +.+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD---~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD---GTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC---cHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 4677777766642 22222332223343 3444443222222234432 34555442 2348999999999999
Q ss_pred ehHHHHHHHhh
Q 025375 239 NLGKETFYLVL 249 (253)
Q Consensus 239 nl~~L~~~L~~ 249 (253)
.++.|...++.
T Consensus 147 ~p~~l~~lv~~ 157 (384)
T TIGR03469 147 GPDNLARLVAR 157 (384)
T ss_pred ChhHHHHHHHH
Confidence 98887777653
No 15
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=78.04 E-value=29 Score=26.63 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=41.2
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
.+.+++|-..+. +.....+++-.+....+..+...+.. .+..-.-.+++. ...+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKH----AKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH------SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-cccccccccccc----cceeEEEEeCCCceEcHHHHHH
Confidence 456666554442 34444444444435566666665544 333333334444 3456999999999999886655
Q ss_pred HHh
Q 025375 246 YLV 248 (253)
Q Consensus 246 ~L~ 248 (253)
++.
T Consensus 99 l~~ 101 (169)
T PF00535_consen 99 LVE 101 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 16
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=77.88 E-value=23 Score=29.84 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=43.1
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
...+++|...+. +.....+ ++...+..+.+.. .+. ..|.. ++..+....+.+|++.+|||+.+..+.|..
T Consensus 28 ~~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 28 PLEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CCEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 456666665443 2233333 3445566665554 222 12332 223333344789999999999999998877
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
.+..
T Consensus 98 l~~~ 101 (235)
T cd06434 98 MLKP 101 (235)
T ss_pred HHHh
Confidence 7654
No 17
>PRK11204 N-glycosyltransferase; Provisional
Probab=77.81 E-value=56 Score=30.87 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=41.3
Q ss_pred chHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 182 ILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 182 ~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
.....+++-.++|..+..++..+ |.. |. .++..+.+..+.+|++..|+|..+..+.|...+..
T Consensus 96 ~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~ 158 (420)
T PRK11204 96 NTGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEH 158 (420)
T ss_pred cHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHH
Confidence 34455555566666666665433 322 32 23455555568899999999999999988776653
No 18
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=77.50 E-value=21 Score=27.25 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=41.5
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhC-CCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMH-GDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~y-gDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (253)
.+.++++-..+. +.....+.+....+ ..++........ .+ ...+.++.+..+.+|++.+|||..+..+.|.
T Consensus 26 ~~~iivvdd~s~---d~t~~~~~~~~~~~~~~~~~~~~~~~~-g~----~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~ 97 (180)
T cd06423 26 KLEVIVVDDGST---DDTLEILEELAALYIRRVLVVRDKENG-GK----AGALNAGLRHAKGDIVVVLDADTILEPDALK 97 (180)
T ss_pred ceEEEEEeCCCc---cchHHHHHHHhccccceEEEEEecccC-Cc----hHHHHHHHHhcCCCEEEEECCCCCcChHHHH
Confidence 456666554443 23344455444443 223333322221 11 2334455555589999999999999887777
Q ss_pred HHHh
Q 025375 245 FYLV 248 (253)
Q Consensus 245 ~~L~ 248 (253)
.++.
T Consensus 98 ~~~~ 101 (180)
T cd06423 98 RLVV 101 (180)
T ss_pred HHHH
Confidence 6633
No 19
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.95 E-value=43 Score=27.57 Aligned_cols=76 Identities=13% Similarity=-0.023 Sum_probs=42.9
Q ss_pred eEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHH
Q 025375 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFY 246 (253)
Q Consensus 167 i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (253)
..++.+-+.+. +.....+.+....++ +..+...+ ......-.-.++.++. ..+.+|++..|||+.+..+.|...
T Consensus 27 ~eiiivD~~s~---d~t~~~~~~~~~~~~-i~~~~~~~-n~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l 100 (202)
T cd04185 27 DHIIVIDNAST---DGTAEWLTSLGDLDN-IVYLRLPE-NLGGAGGFYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKL 100 (202)
T ss_pred ceEEEEECCCC---cchHHHHHHhcCCCc-eEEEECcc-ccchhhHHHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHH
Confidence 45555544433 234445555444444 33333322 2233333344566666 557899999999999998776655
Q ss_pred Hh
Q 025375 247 LV 248 (253)
Q Consensus 247 L~ 248 (253)
+.
T Consensus 101 ~~ 102 (202)
T cd04185 101 LA 102 (202)
T ss_pred HH
Confidence 54
No 20
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=71.36 E-value=61 Score=27.22 Aligned_cols=76 Identities=12% Similarity=-0.022 Sum_probs=44.3
Q ss_pred CceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHH
Q 025375 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 165 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (253)
..+.++++-+.+. +.....++...+++..+......+. ... .++..+.+....+|++.+|||..+.++.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3466776665553 2334444444444433444432211 121 234555554578999999999999988787
Q ss_pred HHHhh
Q 025375 245 FYLVL 249 (253)
Q Consensus 245 ~~L~~ 249 (253)
..+..
T Consensus 101 ~~~~~ 105 (249)
T cd02525 101 ELVEA 105 (249)
T ss_pred HHHHH
Confidence 77753
No 21
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.05 E-value=52 Score=25.49 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.8
Q ss_pred CCccEEEEeCCCeEEehHHHHHHHh
Q 025375 224 WDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
.+.+|++.+|||.++..+.+...+.
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHH
Confidence 3789999999999999888877765
No 22
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.52 E-value=28 Score=32.92 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=57.5
Q ss_pred ccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccc--cCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEeh
Q 025375 163 EAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE--GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 240 (253)
Q Consensus 163 ~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~D--sY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl 240 (253)
...++.++|+=|.+ ..++.|..=.....-++.+++-+ .+..-+.-...+..|+.+.+...+++..|=|+|...
T Consensus 35 s~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 35 SSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred ccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 34567777777665 35566665555555677777543 343334444456778888899999999999999999
Q ss_pred HHHHHHHh
Q 025375 241 GKETFYLV 248 (253)
Q Consensus 241 ~~L~~~L~ 248 (253)
++..++|.
T Consensus 110 dnF~k~l~ 117 (346)
T COG4092 110 DNFAKMLS 117 (346)
T ss_pred HHHHHHHH
Confidence 99999883
No 23
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.28 E-value=11 Score=38.37 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=42.5
Q ss_pred EEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHH-HHHHHhh--CCCccEEEEeCCCeEEehHHHH
Q 025375 168 IIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKT-YFATAVS--MWDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 168 ~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~-~f~wa~~--~~~a~F~lKvDDDvfVnl~~L~ 244 (253)
++-|+++.+.-. +|.-++..+-.|..-..|+.. -+.+... +-++||++-+-|++|||...|+
T Consensus 52 rv~~F~~~~~i~---------------~~~a~~~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~ 116 (681)
T KOG3708|consen 52 RVHLFADSSRID---------------NDLAQLTNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLL 116 (681)
T ss_pred eeEEeecccccc---------------ccHhhccccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHH
Confidence 566777766421 233344444445544555543 3344433 3479999999999999999999
Q ss_pred HHHh
Q 025375 245 FYLV 248 (253)
Q Consensus 245 ~~L~ 248 (253)
.++.
T Consensus 117 ~l~~ 120 (681)
T KOG3708|consen 117 RLID 120 (681)
T ss_pred HHHh
Confidence 8775
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=64.94 E-value=39 Score=28.28 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=24.7
Q ss_pred HHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 218 ATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
..+.+..+.+|++.+|+|+++.++.|..++..
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGY 108 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHH
Confidence 44444457899999999999998887776653
No 25
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=62.33 E-value=56 Score=26.18 Aligned_cols=76 Identities=8% Similarity=-0.081 Sum_probs=46.0
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
.+.++.+-..+. +.....++.-..++..+..+...+... . -.++..+......+|++..|+|..+.++.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G-~----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG-K----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC-c----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 355555554443 234445555556666665565554432 1 12334444444559999999999999888887
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
++..
T Consensus 100 l~~~ 103 (185)
T cd04179 100 LLEK 103 (185)
T ss_pred HHHH
Confidence 7764
No 26
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=62.14 E-value=74 Score=25.69 Aligned_cols=76 Identities=11% Similarity=-0.026 Sum_probs=45.0
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
.+.++.|-+.+. +.....++...+++..+..+.+..++. . -.++..+......+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~---d~t~~~~~~~~~~~~~i~~i~~~~n~G-~----~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST---DRTLEILRELAARDPRVKVIRLSRNFG-Q----QAALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC---ccHHHHHHHHHhhCCCEEEEEecCCCC-c----HHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 466666665554 223334444455566666666544332 1 12334444444569999999999998877766
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
.+..
T Consensus 101 l~~~ 104 (181)
T cd04187 101 MLAK 104 (181)
T ss_pred HHHH
Confidence 6653
No 27
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=61.92 E-value=57 Score=28.82 Aligned_cols=55 Identities=4% Similarity=-0.095 Sum_probs=34.8
Q ss_pred hhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHh
Q 025375 192 KMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 192 ~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
+.+..+..+...++. ....=.-.++++|.+. .++|++..|||+.+..+.|...+.
T Consensus 42 ~~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~~-~~d~i~~lD~D~~~~~~~l~~l~~ 96 (281)
T TIGR01556 42 LRGQKIALIHLGDNQ-GIAGAQNQGLDASFRR-GVQGVLLLDQDSRPGNAFLAAQWK 96 (281)
T ss_pred ccCCCeEEEECCCCc-chHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHH
Confidence 344556555544332 2222222366777653 789999999999999877776654
No 28
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=57.55 E-value=1.2e+02 Score=25.93 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=26.5
Q ss_pred HHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 216 YFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
++.++......+|++.+|+|+.+.++.|...+..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~ 108 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAA 108 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHH
Confidence 3445555557799999999999999998877754
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=55.27 E-value=1.3e+02 Score=25.56 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 217 FATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
+..+......+|++.+|+|+++..+.|...+..
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHH
Confidence 344444446699999999999997777666654
No 30
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=55.22 E-value=28 Score=29.51 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 210 SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 210 t~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
..|+-............+|++..|+|+.|+.+.|...+..
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~ 55 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAP 55 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHH
Confidence 4555444443222357899999999999999998887654
No 31
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=54.90 E-value=72 Score=26.79 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=34.1
Q ss_pred CCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHH
Q 025375 194 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYL 247 (253)
Q Consensus 194 ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 247 (253)
...+..+...++. ....=.-.+++++... +++|++..|||+.+.++.|..++
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 3455555544332 2333344466665543 78999999999999988888874
No 32
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=53.52 E-value=1.2e+02 Score=24.65 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=37.2
Q ss_pred cchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 181 GILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 181 ~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
+.+...+++-.+.++ +..+...++. .. -.++..+....+.+|++.+|+|.++.++.|...+..
T Consensus 42 d~t~~~~~~~~~~~~-i~~i~~~~n~-G~----~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~ 104 (201)
T cd04195 42 QSLNEVLEEFKRKLP-LKVVPLEKNR-GL----GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDF 104 (201)
T ss_pred hhHHHHHHHHHhcCC-eEEEEcCccc-cH----HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHH
Confidence 344444444445555 5555443332 11 112344444457899999999999998888776653
No 33
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=50.94 E-value=1.5e+02 Score=24.94 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHhhCC--CccEEEEeCCCeEEehHHHHHHHhh
Q 025375 216 YFATAVSMW--DAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 216 ~f~wa~~~~--~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
++.++.... +.+|++..|+|+.+.++.|...+..
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~ 108 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHH
Confidence 345554432 4799999999999999988877654
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=50.81 E-value=1.3e+02 Score=24.35 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHhhCCCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 217 FATAVSMWDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
+.++......+|++..|+|..+..+.|...++..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 3444444567999999999999998887777643
No 35
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=49.48 E-value=1.1e+02 Score=28.57 Aligned_cols=86 Identities=13% Similarity=-0.013 Sum_probs=52.9
Q ss_pred CceEEEEEeecCCCCCcchHHHHHHHh----------hhCCCeEEe--eccccC------------CChhHHHHHHHH-H
Q 025375 165 KGIIIRFVIGHSATSGGILDKAIDAEE----------KMHGDFLRL--EHIEGY------------LELSAKTKTYFA-T 219 (253)
Q Consensus 165 ~~i~v~FVvG~s~~~~~~~~~~I~~E~----------~~ygDIL~l--d~~DsY------------~nLt~Ktl~~f~-w 219 (253)
..|.+-|+++.+.. ++...+.++++. ..|+-|.++ ||.+.- ...-.+.++-.+ |
T Consensus 55 ~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 55 ELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred hheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 45889999999862 334444455333 345555554 454321 111233333222 3
Q ss_pred Hh---hCCCccEEEEeCCCeEEehHHHHHHHhhcc
Q 025375 220 AV---SMWDAEFYIKVDDDVHVNLGKETFYLVLHC 251 (253)
Q Consensus 220 a~---~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (253)
+. =.+..+|++-.|-|+.-.++.|++.|..|.
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~ 168 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHD 168 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCC
Confidence 22 235789999999999999999999988774
No 36
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=47.74 E-value=1.6e+02 Score=24.42 Aligned_cols=77 Identities=8% Similarity=-0.075 Sum_probs=45.4
Q ss_pred CceEEEEEeecCCCCCcchHHHHHHHhhhCCCe-EEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHH
Q 025375 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKE 243 (253)
Q Consensus 165 ~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDI-L~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L 243 (253)
..+.++.|-+.|. +.....+++..+.++.. ..+....+. .... ++..+......+|++.+|+|..+.++.+
T Consensus 29 ~~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~~----a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNR-GKGG----AVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCC-CcHH----HHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 3567777766654 23444555555666664 333333222 1222 2233333345699999999999998888
Q ss_pred HHHHhh
Q 025375 244 TFYLVL 249 (253)
Q Consensus 244 ~~~L~~ 249 (253)
..++..
T Consensus 101 ~~l~~~ 106 (211)
T cd04188 101 EKLEEA 106 (211)
T ss_pred HHHHHH
Confidence 877764
No 37
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.70 E-value=1.5e+02 Score=24.07 Aligned_cols=76 Identities=11% Similarity=-0.039 Sum_probs=43.3
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCC-CeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~yg-DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (253)
.+.+++|-..+. +.....+++-...|+ .+.......+. .... .+..+......+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~---d~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST---DGTVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC---CCcHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 567777765553 223334444444454 33333333322 2222 22333445578999999999999888887
Q ss_pred HHHhh
Q 025375 245 FYLVL 249 (253)
Q Consensus 245 ~~L~~ 249 (253)
..+..
T Consensus 99 ~~~~~ 103 (214)
T cd04196 99 RLLKA 103 (214)
T ss_pred HHHHH
Confidence 77664
No 38
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=47.56 E-value=1.6e+02 Score=24.31 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=45.9
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCC--CeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKE 243 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~yg--DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L 243 (253)
.+.+++|...+. +.....+++-.+.|. ++......... ....|.- .+..+......+|++..|+|+.+.++.|
T Consensus 30 ~~eiivVdd~s~---d~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDED---DPAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCc---chHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 377888876664 223344444445554 33333222111 1223433 2344555567899999999999988888
Q ss_pred HHHHhh
Q 025375 244 TFYLVL 249 (253)
Q Consensus 244 ~~~L~~ 249 (253)
...+..
T Consensus 105 ~~l~~~ 110 (196)
T cd02520 105 RRMVAP 110 (196)
T ss_pred HHHHHH
Confidence 776653
No 39
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=46.80 E-value=2.8e+02 Score=26.78 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=46.3
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
++.+++|-..+. +...+.+++..++|..+....... |.. |. .+++.+....+.+|++..|+|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 466655554442 334445555556676655444322 222 32 3455665556889999999999999998877
Q ss_pred HHh
Q 025375 246 YLV 248 (253)
Q Consensus 246 ~L~ 248 (253)
.+.
T Consensus 176 lv~ 178 (444)
T PRK14583 176 LVA 178 (444)
T ss_pred HHH
Confidence 665
No 40
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=46.41 E-value=1.2e+02 Score=22.37 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=22.5
Q ss_pred HHHhhCCCccEEEEeCCCeEEehHHHHHH
Q 025375 218 ATAVSMWDAEFYIKVDDDVHVNLGKETFY 246 (253)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (253)
..+....+.+|++-+|+|..+.++.+...
T Consensus 70 ~~~~~~~~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 70 NAGLKAARGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHhcCCEEEEECCCCccCccHHHHH
Confidence 33433347899999999999998888775
No 41
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=43.49 E-value=1e+02 Score=28.91 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=54.7
Q ss_pred CCceeEEEEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCC-CCCcchHHHHHHHhhhC---CCeEEe
Q 025375 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSA-TSGGILDKAIDAEEKMH---GDFLRL 200 (253)
Q Consensus 125 ~~k~~lvI~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~-~~~~~~~~~I~~E~~~y---gDIL~l 200 (253)
++...++|||.|-... +-.-+-.|-++--+.+.. ++...+.|+-.++.+. +....+...|..+-..| |=+.++
T Consensus 49 ~~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~-~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSP-EERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEecccccC--CCchHHHHHHHHHHhCCH-HHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 4445599999997643 224455554442111111 1233455555555543 22233334444433333 333333
Q ss_pred ecccc-CCCh--------------hHHHHHHHHHH--h-hC-CCccEEEEeCCCeEEehHHHH
Q 025375 201 EHIEG-YLEL--------------SAKTKTYFATA--V-SM-WDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 201 d~~Ds-Y~nL--------------t~Ktl~~f~wa--~-~~-~~a~F~lKvDDDvfVnl~~L~ 244 (253)
.-..+ |-.+ ...++.-+.|+ . .| ..++||+-+.|||....+-+.
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~ 188 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLS 188 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHH
Confidence 32222 2111 11222222222 1 12 257899999999988776443
No 42
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.28 E-value=22 Score=21.12 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=15.2
Q ss_pred HHHHhhhhhhhhhhhhhhhh
Q 025375 83 IQSQDKRLDGLKTKITAVRA 102 (253)
Q Consensus 83 ~~~~~k~i~~lemela~a~~ 102 (253)
+..+..+|+.||-+|+..+.
T Consensus 3 ~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34677889999999987653
No 43
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=40.31 E-value=2e+02 Score=23.71 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=21.1
Q ss_pred CCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 224 WDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
...+|++.+|+|..+.++.|..++..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~ 102 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEA 102 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999998877777664
No 44
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=38.95 E-value=2.8e+02 Score=24.69 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 219 TAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 219 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
.+......+|++..|+|+.+..+-|..++..
T Consensus 77 ~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~ 107 (299)
T cd02510 77 AGARAATGDVLVFLDSHCEVNVGWLEPLLAR 107 (299)
T ss_pred HHHHHccCCEEEEEeCCcccCccHHHHHHHH
Confidence 3333346799999999999988777666643
No 45
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=38.67 E-value=2.4e+02 Score=26.23 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=44.8
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCC-eEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygD-IL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 244 (253)
.+.+++|-..|.+ .....+++-.+.+++ ++...+..++. ...=...+++ +.+.+|++-+|+|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~D---~T~~il~~~~~~~~~~v~~i~~~~n~G-~~~A~~~G~~----~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSSD---NSAEMLVEAAQAPDSHIVAILLNRNYG-QHSAIMAGFS----HVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCCC---cHHHHHHHHHhhcCCcEEEEEeCCCCC-HHHHHHHHHH----hCCCCEEEEECCCCCCCHHHHH
Confidence 5788888776652 223333333344454 44444444432 1122223333 3478999999999999998888
Q ss_pred HHHhh
Q 025375 245 FYLVL 249 (253)
Q Consensus 245 ~~L~~ 249 (253)
.+++.
T Consensus 110 ~l~~~ 114 (325)
T PRK10714 110 RLVAK 114 (325)
T ss_pred HHHHH
Confidence 77764
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=38.43 E-value=2.9e+02 Score=24.73 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=48.0
Q ss_pred cCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeecc--ccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehH
Q 025375 164 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI--EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLG 241 (253)
Q Consensus 164 ~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~--DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~ 241 (253)
...+.+++|=+.+. ...+..|.+-.+.++-+..+... ..+.+.+. +...+......+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 35677777766553 33446666666666655232222 11223222 22233444588999999999999999
Q ss_pred HHHHHHh
Q 025375 242 KETFYLV 248 (253)
Q Consensus 242 ~L~~~L~ 248 (253)
.+...+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9888877
No 47
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=37.31 E-value=32 Score=25.04 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHHhhcc
Q 025375 21 ALFLCACSFCAGMSFTN 37 (253)
Q Consensus 21 ~~~l~~~~~~~~~~~~~ 37 (253)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 46889999999998763
No 48
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=37.06 E-value=3.9e+02 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHhhCCCccEEEEeCCCeEEehHHHHHHHh
Q 025375 216 YFATAVSMWDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
++.++.+..+.+|++.+|+|..+..+.|...+.
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~ 154 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVT 154 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHH
Confidence 445666666789999999999999988877664
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=35.00 E-value=2.9e+02 Score=23.70 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=43.4
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCC--eEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKE 243 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygD--IL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L 243 (253)
.+.+++|-..|.+ .....+.+-.++|++ +.......+. .... ++..+......+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~D---~t~~i~~~~~~~~~~~~v~~~~~~~n~-G~~~----a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSPD---GTQDVVKQLQKVYGEDRILLRPRPGKL-GLGT----AYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCCC---CHHHHHHHHHHhcCCCcEEEEecCCCC-CHHH----HHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 5677777665542 233344443445653 3333333222 2222 3334433446799999999999998888
Q ss_pred HHHHhh
Q 025375 244 TFYLVL 249 (253)
Q Consensus 244 ~~~L~~ 249 (253)
..++..
T Consensus 112 ~~l~~~ 117 (243)
T PLN02726 112 PSFIKK 117 (243)
T ss_pred HHHHHH
Confidence 776653
No 50
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.28 E-value=56 Score=26.16 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=24.6
Q ss_pred HHHHhhCCCccEEEEeCCCeEEehHHHHHHH
Q 025375 217 FATAVSMWDAEFYIKVDDDVHVNLGKETFYL 247 (253)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 247 (253)
+..+......+|++.+|||..+..+.+...+
T Consensus 67 ~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~ 97 (202)
T cd06433 67 MNKGIALATGDIIGFLNSDDTLLPGALLAVV 97 (202)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCchHHHHHH
Confidence 3444555578999999999999988888876
No 51
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=33.50 E-value=26 Score=31.18 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHhHHhhcc------cCCCCCcc
Q 025375 17 PRKWALFLCACSFCAGMSFTN------RMWMMPES 45 (253)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~------r~w~~~~~ 45 (253)
+-...+++|-.||+.|++|++ =||+.+.+
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 344578999999999999998 35877654
No 52
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=33.03 E-value=18 Score=32.12 Aligned_cols=31 Identities=29% Similarity=0.644 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHHHHhHHhhcc------cCCCCCccc
Q 025375 16 IPRKWALFLCACSFCAGMSFTN------RMWMMPESK 46 (253)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~------r~w~~~~~~ 46 (253)
+|-...+++|-.||+.|++|++ =||+.+.+.
T Consensus 5 ~~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t~ 41 (196)
T PF08229_consen 5 CSFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPTD 41 (196)
T ss_pred cceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCCH
Confidence 3444568999999999999998 468876653
No 53
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=32.45 E-value=64 Score=25.83 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=24.9
Q ss_pred HHHhhCCCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 218 ATAVSMWDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
..+.+....+|++..|+|..+..+-|...+...
T Consensus 72 n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 72 NKAIAAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 444455578999999999999888777766543
No 54
>PHA03289 envelope glycoprotein I; Provisional
Probab=31.15 E-value=96 Score=29.80 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhHHhhcccCCCCCcccchh----------cccc-cc-cCcchhhhhhccccchhhHHHHhHHHHHHHHhh
Q 025375 21 ALFLCACSFCAGMSFTNRMWMMPESKGVA----------RISK-TE-EIENPELKAVKHESNNNTEKLAMVEQAIQSQDK 88 (253)
Q Consensus 21 ~~~l~~~~~~~~~~~~~r~w~~~~~~~~~----------~~~~-~~-~~~~~~~~~~~~~~~~~~~~v~~t~~~~~~~~k 88 (253)
.++||+.+.+.+....- - -.|..|.+. +... .+ -||++..| ..|+||. | -+-...|+|
T Consensus 275 ~~~~~~~~l~i~~~~~~-~-~s~~~~iy~g~~~s~~~~~~~~~~~~~f~~~~~~~---~~ps~i~-~----~e~~e~~~k 344 (352)
T PHA03289 275 YLVLCIIALLIVTVCSA-C-KSPRRRIYIGNEPSDLTSLINSAVNEKFGCNPETK---NVPSDIS-E----AELLERLEK 344 (352)
T ss_pred HHHHHHHHHHHHHHHHH-c-CCCCCceecCCCCcccchhhhhhhhhhhcCCcccc---cCccccc-H----HHHHHHHHH
Confidence 46778777776654432 1 123333332 2111 11 48987653 4678885 2 234567899
Q ss_pred hhhhhhhh
Q 025375 89 RLDGLKTK 96 (253)
Q Consensus 89 ~i~~leme 96 (253)
+|..||.|
T Consensus 345 ~~~~~~~~ 352 (352)
T PHA03289 345 KIEMLETE 352 (352)
T ss_pred HhhhhhcC
Confidence 99999976
No 55
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=30.91 E-value=2.8e+02 Score=27.62 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHhhhCCCeEE-eecc---ccCCC-------hhHHHHHHHHHHh----hCCCccEEEEeCCCeEEehHHHH
Q 025375 186 AIDAEEKMHGDFLR-LEHI---EGYLE-------LSAKTKTYFATAV----SMWDAEFYIKVDDDVHVNLGKET 244 (253)
Q Consensus 186 ~I~~E~~~ygDIL~-ld~~---DsY~n-------Lt~Ktl~~f~wa~----~~~~a~F~lKvDDDvfVnl~~L~ 244 (253)
...++.+.|+|-+. +.+. +.... -.+|.-.-++||. ....+++++-+.||.-|-+|=+-
T Consensus 137 ~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~ 210 (434)
T PF03071_consen 137 EVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFE 210 (434)
T ss_dssp HHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHH
T ss_pred HHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHH
Confidence 45667778865432 3322 11100 0133444556664 34578999999999999887554
No 56
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=30.67 E-value=32 Score=26.05 Aligned_cols=22 Identities=32% Similarity=0.715 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhHHhhcccC
Q 025375 18 RKWALFLCACSFCAGMSFTNRM 39 (253)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~r~ 39 (253)
.-|++++-++|..||.+++.+|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999886
No 57
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=29.94 E-value=54 Score=20.51 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.9
Q ss_pred cchhHHHHHHHHHHHhHHhhccc
Q 025375 16 IPRKWALFLCACSFCAGMSFTNR 38 (253)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~r 38 (253)
++--|+.++.+|+|-..+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45569999999999999998887
No 58
>PF04786 Baculo_DNA_bind: ssDNA binding protein ; InterPro: IPR006871 This is a family of Baculovirus ssDNA-binding proteins.
Probab=28.80 E-value=52 Score=30.07 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=30.4
Q ss_pred hCCCeEEee--ccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHH
Q 025375 193 MHGDFLRLE--HIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKE 243 (253)
Q Consensus 193 ~ygDIL~ld--~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L 243 (253)
.|||++.+- ....|.+.-.+.+..+. .|..+..++++|+++||+|.=
T Consensus 94 ~fG~Fl~i~w~~~~~~n~v~~~im~~y~----~~~~~~~i~lq~~~~vnlP~d 142 (248)
T PF04786_consen 94 TFGEFLSISWSNMPVHNNVFGNIMGKYF----KWEEDEPIKLQNSVCVNLPKD 142 (248)
T ss_pred CCCCeEEEecCChHHHHHHHHHHHHHHh----cccCCCcEEeccceEEEcCCc
Confidence 489998875 33334333333333221 456778999999999999864
No 59
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.57 E-value=28 Score=31.98 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=15.0
Q ss_pred HHhhhhhhhhhhhhhhhhc
Q 025375 85 SQDKRLDGLKTKITAVRAE 103 (253)
Q Consensus 85 ~~~k~i~~lemela~a~~~ 103 (253)
+--++|++||-||+.-|++
T Consensus 119 ~AlqKIsALEdELs~LRaQ 137 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQ 137 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3356799999999988774
No 60
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=27.47 E-value=53 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhHHhhc
Q 025375 21 ALFLCACSFCAGMSFT 36 (253)
Q Consensus 21 ~~~l~~~~~~~~~~~~ 36 (253)
+++||+++|.+|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6789999999998764
No 61
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=26.82 E-value=4.6e+02 Score=23.44 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=22.4
Q ss_pred CCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 224 WDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 224 ~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
.+.+|++-.|-|..+.++.|...+..
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v~~ 119 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLVRR 119 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999998887753
No 62
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=26.01 E-value=3.3e+02 Score=21.48 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=47.7
Q ss_pred EEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhH
Q 025375 132 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSA 211 (253)
Q Consensus 132 I~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~ 211 (253)
|.|.+-+.+.+||+.+++.... .++.+.|+-|-.+.. .....+.... +- .........++.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~-----------~~~~~~~~~Avd~~~--~~~~~~~~~~----~~--~~~~~~~~~l~~ 62 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAA-----------LGLDFEFFDAVDGKD--LSEEELAALY----DA--LFLPRYGRPLTP 62 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHH-----------cCCCeEEEecccccc--CCHHHHHHHh----HH--HhhhhcCCCCCh
Confidence 4577888899999999985543 346677777665421 1111121111 10 000001122222
Q ss_pred -------HHHHHHHHHhhCCCccEEEEeCCCeEEehH
Q 025375 212 -------KTKTYFATAVSMWDAEFYIKVDDDVHVNLG 241 (253)
Q Consensus 212 -------Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~ 241 (253)
-.+..++.+++ -+.++.+-..||+.+..+
T Consensus 63 gEiGC~lSH~~~w~~~~~-~~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 63 GEIGCFLSHYKLWQKIVE-SNLEYALILEDDAILDPD 98 (128)
T ss_pred hhHHHHHHHHHHHHHHHH-cCCCeEEEEccCcEECCC
Confidence 22223333333 256899999999988764
No 63
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=25.91 E-value=84 Score=27.64 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHhhCCCccEEEEeCCCeEEehHHHHHHH
Q 025375 216 YFATAVSMWDAEFYIKVDDDVHVNLGKETFYL 247 (253)
Q Consensus 216 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 247 (253)
++.-+.+..+++|++.+.|||++.-+..+..|
T Consensus 45 ~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~i 76 (217)
T PF13712_consen 45 AYNEAMEKAKAKYLVFLHQDVFIINENWLEDI 76 (217)
T ss_dssp HHHHHGGG--SSEEEEEETTEE-SSHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEeCCeEEcchhHHHHH
Confidence 55667777789999999999999755544433
No 64
>PRK10018 putative glycosyl transferase; Provisional
Probab=24.89 E-value=5.3e+02 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred HHHhhCCCccEEEEeCCCeEEehHHHHHHHh
Q 025375 218 ATAVSMWDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
..+......+|++.+|+|.++.++.|...+.
T Consensus 78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~ 108 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLA 108 (279)
T ss_pred HHHHHHcCCCEEEEECCCCCCCccHHHHHHH
Confidence 3344445789999999999999988876665
No 65
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=23.99 E-value=4.2e+02 Score=22.02 Aligned_cols=93 Identities=17% Similarity=0.142 Sum_probs=50.7
Q ss_pred EEEeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccc---cCCC
Q 025375 132 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE---GYLE 208 (253)
Q Consensus 132 I~V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~D---sY~n 208 (253)
|.|.|-+.+.+||+.+.+.... .++.+.|+-|-.+.. +.. .+....|+.-....... +..+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~-----------~~~~~e~~~Avdg~~---l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAK-----------LGINFEFFDAVDGRD---LSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHH-----------cCCceEEEEeecccc---cch--HHHHHHhhhhhhhccccccCCcce
Confidence 5677889999999999777654 256677777665421 111 11112222111111000 0111
Q ss_pred h--hHHHHHHHHHHhhCCCccEEEEeCCCeEEehH
Q 025375 209 L--SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLG 241 (253)
Q Consensus 209 L--t~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~ 241 (253)
+ ..-.+..++.+++. +.+|.+-.-||++++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 1 23333444444442 57899999999999865
No 66
>PF04846 Herpes_pp38: Herpesvirus pp38 phosphoprotein; InterPro: IPR006930 Members of this family contain a conserved region found in most herpesvirus pp38 phosphoproteins.
Probab=23.95 E-value=57 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.8
Q ss_pred cchhHHHHHHHHHHHhHHhhc
Q 025375 16 IPRKWALFLCACSFCAGMSFT 36 (253)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~ 36 (253)
+|.|..++=.-.||+||+++-
T Consensus 15 ~S~k~lv~Gscm~f~aG~LiG 35 (63)
T PF04846_consen 15 FSAKSLVLGSCMSFFAGTLIG 35 (63)
T ss_pred eecchhhHHHHHHHHHHHhcc
Confidence 477787777778999999873
No 67
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=23.85 E-value=2.9e+02 Score=20.13 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCCeEEeeccccCCChhHHHHHHHHHH-hhCCCccEEEEeCCCeEEehHH
Q 025375 194 HGDFLRLEHIEGYLELSAKTKTYFATA-VSMWDAEFYIKVDDDVHVNLGK 242 (253)
Q Consensus 194 ygDIL~ld~~DsY~nLt~Ktl~~f~wa-~~~~~a~F~lKvDDDvfVnl~~ 242 (253)
+.++-...+...|..-... ....... .....++|++.+|=|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4556666666667543333 2233333 3335899999999998887765
No 68
>PLN03181 glycosyltransferase; Provisional
Probab=22.58 E-value=4.1e+02 Score=26.59 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCcchhhhhhccCceEEEEEeecCCC-----CCcc-hHHHHH---HHhhhCC-CeEEee-ccc-cCCChhH
Q 025375 144 RDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSAT-----SGGI-LDKAID---AEEKMHG-DFLRLE-HIE-GYLELSA 211 (253)
Q Consensus 144 R~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~-----~~~~-~~~~I~---~E~~~yg-DIL~ld-~~D-sY~nLt~ 211 (253)
=|.-|+.|...-. ....+.+-+|+.|.|..+. .++. +.+.++ +=+++|| ++...+ ..+ .|..-..
T Consensus 108 wD~kR~~Wl~~~p---~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~Wa 184 (453)
T PLN03181 108 WDEKRAEWLKLHP---SFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWA 184 (453)
T ss_pred HHHHHHHHHHhCC---CCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhh
Confidence 3556677775321 1112334556666665521 1222 222222 2246677 555444 223 4544555
Q ss_pred HHHHHHHHHhhCCCccEEEEeCCCeEE
Q 025375 212 KTKTYFATAVSMWDAEFYIKVDDDVHV 238 (253)
Q Consensus 212 Ktl~~f~wa~~~~~a~F~lKvDDDvfV 238 (253)
|+...-.....+++++|+.-+|-|+++
T Consensus 185 KipalRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 185 KLPVVRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 665544445678999999999999766
No 69
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=22.00 E-value=9.4e+02 Score=25.29 Aligned_cols=116 Identities=8% Similarity=-0.031 Sum_probs=60.0
Q ss_pred CCceeEEEEEeCCCCChH-HHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcch--HHHHHHHhhhCC---CeE
Q 025375 125 KRKYFMVIGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGIL--DKAIDAEEKMHG---DFL 198 (253)
Q Consensus 125 ~~k~~lvI~V~Sa~~n~~-rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~--~~~I~~E~~~yg---DIL 198 (253)
.....+.|+|.+.-...+ -+..++.++.+-. +......+.+ ||+..+.+++-.. ...+.+=.++|+ .|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~----~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLA----ATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHH----hcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 344556666666654433 3456777775311 1111224555 8887665321110 111222234443 343
Q ss_pred EeeccccCCChhHHHHHHHHHHhh-CCCccEEEEeCCCeEEehHHHHHHHh
Q 025375 199 RLEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 199 ~ld~~DsY~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
...- -.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+++.
T Consensus 196 yr~R---~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~ 243 (691)
T PRK05454 196 YRRR---RRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVR 243 (691)
T ss_pred EEEC---CcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHH
Confidence 3322 23334455533333222 13679999999999999999888775
No 70
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.79 E-value=1.2e+02 Score=24.99 Aligned_cols=30 Identities=3% Similarity=0.087 Sum_probs=22.7
Q ss_pred HHhhCCCccEEEEeCCCeEEehHHHHHHHh
Q 025375 219 TAVSMWDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 219 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
.+......+|++.+|+|+.+..+.+...+.
T Consensus 66 ~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~ 95 (221)
T cd02522 66 AGAAAARGDWLLFLHADTRLPPDWDAAIIE 95 (221)
T ss_pred HHHHhccCCEEEEEcCCCCCChhHHHHHHH
Confidence 344444579999999999998887777544
No 71
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=21.75 E-value=4.4e+02 Score=21.33 Aligned_cols=36 Identities=14% Similarity=-0.014 Sum_probs=25.7
Q ss_pred HHHHHHHhh-CCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 214 KTYFATAVS-MWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 214 l~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
-.++.++.. ..+.+|++.+|.|+.+.++.|..++..
T Consensus 69 n~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~ 105 (183)
T cd06438 69 DFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNAR 105 (183)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHH
Confidence 345555431 246899999999999998877766654
No 72
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=21.59 E-value=50 Score=25.88 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.2
Q ss_pred ccEEEEeCCCeEEehHH
Q 025375 226 AEFYIKVDDDVHVNLGK 242 (253)
Q Consensus 226 a~F~lKvDDDvfVnl~~ 242 (253)
-.|-...|||++|-+++
T Consensus 20 e~F~F~GDDDvWVFIn~ 36 (90)
T TIGR02148 20 QYFEFRGDDDVWVFINN 36 (90)
T ss_pred cEEEEEcCCeEEEEECC
Confidence 46788999999998865
No 73
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=21.39 E-value=98 Score=24.68 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=19.7
Q ss_pred hhhHHHHhHH----HHHHHHhhhhhhhhhhhh
Q 025375 71 NNTEKLAMVE----QAIQSQDKRLDGLKTKIT 98 (253)
Q Consensus 71 ~~~~~v~~t~----~~~~~~~k~i~~lemela 98 (253)
-|++-+++.. +.|.+++|+|.+.|.+||
T Consensus 68 Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kla 99 (99)
T PF13758_consen 68 QVVDVLSRRIDYVQQNIETLEKQLEAAENKLA 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444 388889999999998886
No 74
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=21.16 E-value=59 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=19.3
Q ss_pred HhhcCCcchhhhhhccCceEEEEEeecCC
Q 025375 149 ATWMPQGEKRKMLEEAKGIIIRFVIGHSA 177 (253)
Q Consensus 149 ~TW~~~~~~l~kL~~~~~i~v~FVvG~s~ 177 (253)
++||+. ++....+..|.-+|++|...
T Consensus 9 qSWM~D---LrS~I~~~~I~ql~ipGsHn 34 (51)
T PF03490_consen 9 QSWMSD---LRSSIGEMAITQLFIPGSHN 34 (51)
T ss_pred HHHHHH---HHHHHhcceeeeEEeccccc
Confidence 688875 33444577899999999875
No 75
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=20.20 E-value=42 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.4
Q ss_pred cchhHHHHHHHHHHHhHHhhccc
Q 025375 16 IPRKWALFLCACSFCAGMSFTNR 38 (253)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~r 38 (253)
++--|+.++.+|+|-+.+.|=||
T Consensus 4 vsl~Waalm~~FtfSlslVVWGR 26 (29)
T PRK14747 4 LTLGWVSVLVLFTWSIAMVVWGR 26 (29)
T ss_pred ehhHHHHHHHHHhheeeEEEEec
Confidence 45669999999999988888776
Done!