Query 025375
Match_columns 253
No_of_seqs 264 out of 1083
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:03:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.3 7.8E-12 2.7E-16 112.9 8.8 106 126-251 11-119 (280)
2 3bcv_A Putative glycosyltransf 81.9 19 0.00064 29.1 12.1 75 166-249 34-108 (240)
3 1xhb_A Polypeptide N-acetylgal 71.7 57 0.002 29.7 12.7 76 167-249 62-138 (472)
4 1qg8_A Protein (spore coat pol 70.5 41 0.0014 27.3 12.5 77 166-248 30-111 (255)
5 4fix_A UDP-galactofuranosyl tr 65.2 46 0.0016 32.8 11.1 34 215-248 258-291 (657)
6 2d7i_A Polypeptide N-acetylgal 61.7 71 0.0024 30.4 11.5 75 167-248 145-219 (570)
7 2z86_A Chondroitin synthase; G 58.6 1.2E+02 0.0042 28.5 13.0 74 166-248 404-477 (625)
8 2ffu_A Ppgalnact-2, polypeptid 53.6 1E+02 0.0036 28.3 10.9 72 167-249 99-170 (501)
9 4dzn_A Coiled-coil peptide CC- 53.4 11 0.00038 22.7 2.6 28 75-102 3-30 (33)
10 2lnd_A De novo designed protei 46.4 19 0.00065 27.0 3.6 70 134-221 31-103 (112)
11 2pnv_A Small conductance calci 39.4 23 0.0008 23.1 2.8 30 70-102 8-37 (43)
12 2z86_A Chondroitin synthase; G 31.8 3.3E+02 0.011 25.5 13.5 76 166-249 123-198 (625)
13 1vf5_H Protein PET N; photosyn 30.5 33 0.0011 20.6 2.1 23 16-38 4-26 (29)
14 4hg6_A Cellulose synthase subu 30.2 2.3E+02 0.0079 28.2 9.8 33 217-249 230-262 (802)
15 1q90_N Cytochrome B6F complex 26.0 33 0.0011 20.9 1.6 23 16-38 6-28 (31)
16 2z5i_A TM, general control pro 24.4 35 0.0012 22.9 1.7 22 81-102 12-33 (52)
17 2er8_A Regulatory protein Leu3 22.7 33 0.0011 23.3 1.4 22 81-102 49-70 (72)
18 2zvf_A Alanyl-tRNA synthetase; 22.2 1.6E+02 0.0054 23.2 5.7 34 69-102 27-60 (171)
19 1pyi_A Protein (pyrimidine pat 20.2 1E+02 0.0035 21.9 3.7 28 82-109 49-76 (96)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.28 E-value=7.8e-12 Score=112.91 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=73.4
Q ss_pred CceeEEEEEeCCCCC-hHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeecc-
Q 025375 126 RKYFMVIGINTAFSS-RKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI- 203 (253)
Q Consensus 126 ~k~~lvI~V~Sa~~n-~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~- 203 (253)
..-.|+|+|+|++.+ ..|+.+||+||++... .. .||.+... +. .+... ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~---------~~--~fifsd~~--d~----~l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR---------QQ--TFIFTDSP--DE----RLQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSG---------GG--EEEEESSC--CH----HHHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCC---------Cc--eEEEcCCC--cc----ccccc--ccccceeccccc
Confidence 446788999999984 5688999999997421 11 23333322 11 22222 34578887764
Q ss_pred -ccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHhhcc
Q 025375 204 -EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLVLHC 251 (253)
Q Consensus 204 -DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 251 (253)
+++.+++.|+...+.+.. +.+++|++|+|||+|||+++|..+|..+.
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d 119 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFP 119 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSC
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCC
Confidence 467889999999888654 24899999999999999999999998764
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=81.93 E-value=19 Score=29.06 Aligned_cols=75 Identities=13% Similarity=0.036 Sum_probs=45.4
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
.+.++.|-..+. +.....+++-.+++..+..+. .++ ..... +...+......+|++.+|||.++.++.|..
T Consensus 34 ~~eiIvvDd~S~---d~t~~~~~~~~~~~~~i~~i~-~~n-~G~~~----a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP---DNCPKICDDYAAQYPNIKVIH-KKN-AGLGM----ACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS---SSHHHHHHHHHHHCSSEEEEE-CCC-CCHHH----HHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC---cCHHHHHHHHHhhCCCEEEEE-CCC-CChHH----HHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 467776665443 233444555455676776664 322 12222 233444444779999999999999888777
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
.+..
T Consensus 105 l~~~ 108 (240)
T 3bcv_A 105 MYNV 108 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=71.73 E-value=57 Score=29.71 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=45.3
Q ss_pred eEEEEEeecCCCCCcchHHHHHHHhhhCC-CeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 167 IIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 167 i~v~FVvG~s~~~~~~~~~~I~~E~~~yg-DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
..++.|-..|. ++.....+++-.+.+. .+..+...++. .++. +...+......+|++..|+|+.++++-|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~~~----a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLIR----ARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-ChHH----HHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 45555554443 2234455555556676 56666554433 2222 233333344689999999999999887777
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
++..
T Consensus 135 ll~~ 138 (472)
T 1xhb_A 135 LLAR 138 (472)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=70.54 E-value=41 Score=27.27 Aligned_cols=77 Identities=8% Similarity=-0.107 Sum_probs=43.9
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccC-----CChhHHHHHHHHHHhhCCCccEEEEeCCCeEEeh
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-----LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNL 240 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY-----~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl 240 (253)
.+.+++|-..+. +.. ..+-++...+..+..+.....- .|.. .-.++..+......+|++.+|||.++.+
T Consensus 30 ~~eiivvDd~S~---d~t-~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EET-LNVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---chH-HHHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 467766665443 222 2344444345566555433110 2322 2233445555558899999999999998
Q ss_pred HHHHHHHh
Q 025375 241 GKETFYLV 248 (253)
Q Consensus 241 ~~L~~~L~ 248 (253)
+.|...+.
T Consensus 104 ~~l~~~~~ 111 (255)
T 1qg8_A 104 DRLLKMVR 111 (255)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=65.16 E-value=46 Score=32.77 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHhhCCCccEEEEeCCCeEEehHHHHHHHh
Q 025375 215 TYFATAVSMWDAEFYIKVDDDVHVNLGKETFYLV 248 (253)
Q Consensus 215 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~ 248 (253)
.+++.|....+++|++.+|||+.+.++.|..++.
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~ 291 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLA 291 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHH
Confidence 4666666544789999999999999988877665
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=61.70 E-value=71 Score=30.42 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=45.0
Q ss_pred eEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHH
Q 025375 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFY 246 (253)
Q Consensus 167 i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (253)
+.++.|-..|. ++.+...+++-.+.+..|.++...+.. .+..-.-.+++. ...+|++.+|+|+.++++-|..+
T Consensus 145 ~EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~A~N~G~~~----A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 145 AEIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIRTRMLGASV----ATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHHHHHHHHHH----CCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHHHHHHHHHh----cCCCEEEEEcCCccccccHHHHH
Confidence 35665554443 233355566656667667666554332 333333333433 36799999999999988766655
Q ss_pred Hh
Q 025375 247 LV 248 (253)
Q Consensus 247 L~ 248 (253)
+.
T Consensus 218 l~ 219 (570)
T 2d7i_A 218 LD 219 (570)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=58.57 E-value=1.2e+02 Score=28.53 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=44.4
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
.+.++.|-..|. +.....+.+-.+.+..+..+. .++ .... .++..+......+|++.+|+|.++.++.|..
T Consensus 404 ~~eiivvdd~S~---d~t~~~~~~~~~~~~~i~~~~-~~n-~G~~----~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST---DDTLRILQEHYANHPRVRFIS-QKN-KGIG----SASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS---SSHHHHHHHHHTTCTTEEEEE-ECC-CCHH----HHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC---hhHHHHHHHHHhhCCcEEEEe-CCC-CCHH----HHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 467776666554 233344444445566666654 222 1222 2334444445789999999999999888876
Q ss_pred HHh
Q 025375 246 YLV 248 (253)
Q Consensus 246 ~L~ 248 (253)
.+.
T Consensus 475 ~~~ 477 (625)
T 2z86_A 475 CLD 477 (625)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=53.57 E-value=1e+02 Score=28.35 Aligned_cols=72 Identities=14% Similarity=-0.148 Sum_probs=42.7
Q ss_pred eEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHH
Q 025375 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFY 246 (253)
Q Consensus 167 i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (253)
+.+++|-..|. ++++ .+..+.+..+..+...+.. .+. .+...+......+|++.+|+|+.+.++-|..+
T Consensus 99 ~EIIvVDDgS~--D~t~----~~~~~~~~~v~vi~~~~n~-G~~----~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPED----GALLGKIEKVRVLRNDRRE-GLM----RSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTHH----HHGGGGBTTEEEEECSSCC-HHH----HHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chHH----HHHHhcCCCEEEEECCCCc-CHH----HHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 46666665443 2222 2333456666666554332 222 23334444447899999999999998877776
Q ss_pred Hhh
Q 025375 247 LVL 249 (253)
Q Consensus 247 L~~ 249 (253)
+..
T Consensus 168 l~~ 170 (501)
T 2ffu_A 168 LER 170 (501)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 9
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.38 E-value=11 Score=22.73 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhh
Q 025375 75 KLAMVEQAIQSQDKRLDGLKTKITAVRA 102 (253)
Q Consensus 75 ~v~~t~~~~~~~~k~i~~lemela~a~~ 102 (253)
|+.--.+-|-.|.|.|+.|.-|+|+-++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334445677899999999999998876
No 10
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=46.41 E-value=19 Score=27.04 Aligned_cols=70 Identities=29% Similarity=0.369 Sum_probs=45.9
Q ss_pred EeCCCCChHHHHHHHHhhcCCcchhhhhhccCceEEEEEeecCCCCCcchHHHHHHHhhhCC---CeEEeeccccCCChh
Q 025375 134 INTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELS 210 (253)
Q Consensus 134 V~Sa~~n~~rR~aIR~TW~~~~~~l~kL~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~yg---DIL~ld~~DsY~nLt 210 (253)
|.|+.++.+-|+.|...= .+..-.++||-|.+.|. -...+.|+++-| |++-. -..++|+
T Consensus 31 irtatssqdirdiiksmk-----------dngkplvvfvngasqnd----vnefqneakkegvsydvlks---tdpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMK-----------DNGKPLVVFVNGASQND----VNEFQNEAKKEGVSYDVLKS---TDPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHT-----------TCCSCEEEEECSCCHHH----HHHHHHHHHHHTCEEEEEEC---CCHHHHH
T ss_pred eeeccchhhHHHHHHHHH-----------hcCCeEEEEecCccccc----HHHHHHHHHhcCcchhhhcc---CCHHHHH
Confidence 567777788888885432 23446789999988642 234556666655 33332 2346899
Q ss_pred HHHHHHHHHHh
Q 025375 211 AKTKTYFATAV 221 (253)
Q Consensus 211 ~Ktl~~f~wa~ 221 (253)
..+..|++.|-
T Consensus 93 qrvreflktag 103 (112)
T 2lnd_A 93 QRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcc
Confidence 99999999874
No 11
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.35 E-value=23 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=21.0
Q ss_pred chhhHHHHhHHHHHHHHhhhhhhhhhhhhhhhh
Q 025375 70 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRA 102 (253)
Q Consensus 70 ~~~~~~v~~t~~~~~~~~k~i~~lemela~a~~ 102 (253)
.|++.++...|+ +|+|+|.+||-+|.+-..
T Consensus 8 ydlvsel~~r~e---~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 8 YDMISDLNERSE---DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 455555544443 689999999999987654
No 12
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=31.78 E-value=3.3e+02 Score=25.54 Aligned_cols=76 Identities=12% Similarity=-0.031 Sum_probs=41.0
Q ss_pred ceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHH
Q 025375 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETF 245 (253)
Q Consensus 166 ~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 245 (253)
.+.+++|-..+. +... .+-++......+..+...+.-.... .+...+......+|++.+|||+.+..+.|..
T Consensus 123 ~~eiivvDd~s~---d~t~-~~~~~~~~~~~i~~i~~~~~~~g~~----~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~ 194 (625)
T 2z86_A 123 DYEVIVADDGSK---ENIE-EIVREFESLLNIKYVRQKDYGYQLC----AVRNLGLRAAKYNYVAILDCDMAPNPLWVQS 194 (625)
T ss_dssp CEEEEEEEESCS---SCHH-HHHHTTTTTSCEEEEEECCCSCCHH----HHHHHHHHHCCSSEEEEECTTEEECTTHHHH
T ss_pred CeEEEEEeCCCc---hhHH-HHHHHhhhcCCeEEEEeCCCCcchh----HHHHHHHHhCCcCEEEEECCCCCCCHHHHHH
Confidence 566766665543 2222 3333333323454444322111122 2233344444789999999999999887776
Q ss_pred HHhh
Q 025375 246 YLVL 249 (253)
Q Consensus 246 ~L~~ 249 (253)
.+..
T Consensus 195 ~~~~ 198 (625)
T 2z86_A 195 YMEL 198 (625)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 13
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=30.48 E-value=33 Score=20.59 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHhHHhhccc
Q 025375 16 IPRKWALFLCACSFCAGMSFTNR 38 (253)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~r 38 (253)
++--|+.++.+|+|-..+.|=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 56679999999999999988776
No 14
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=30.16 E-value=2.3e+02 Score=28.21 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=25.9
Q ss_pred HHHHhhCCCccEEEEeCCCeEEehHHHHHHHhh
Q 025375 217 FATAVSMWDAEFYIKVDDDVHVNLGKETFYLVL 249 (253)
Q Consensus 217 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 249 (253)
+..+....+.+|++.+|+|+.+..+.|...+..
T Consensus 230 lN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~ 262 (802)
T 4hg6_A 230 MSAALERLKGELVVVFDADHVPSRDFLARTVGY 262 (802)
T ss_dssp HHHHHHHCCCSEEEECCTTEEECTTHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCCcChHHHHHHHHH
Confidence 455555568899999999999999887776653
No 15
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=25.98 E-value=33 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHhHHhhccc
Q 025375 16 IPRKWALFLCACSFCAGMSFTNR 38 (253)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~~~r 38 (253)
++--|+.++.+|+|-..+.|=||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 56679999999999999988777
No 16
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.44 E-value=35 Score=22.88 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhh
Q 025375 81 QAIQSQDKRLDGLKTKITAVRA 102 (253)
Q Consensus 81 ~~~~~~~k~i~~lemela~a~~ 102 (253)
..++.|+|+|..||.+|.+++.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3677899999999999998864
No 17
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.66 E-value=33 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhh
Q 025375 81 QAIQSQDKRLDGLKTKITAVRA 102 (253)
Q Consensus 81 ~~~~~~~k~i~~lemela~a~~ 102 (253)
.-+++|+.+|..||..|+..++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566788899999988887665
No 18
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.22 E-value=1.6e+02 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=28.6
Q ss_pred cchhhHHHHhHHHHHHHHhhhhhhhhhhhhhhhh
Q 025375 69 SNNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRA 102 (253)
Q Consensus 69 ~~~~~~~v~~t~~~~~~~~k~i~~lemela~a~~ 102 (253)
+.++...|.+..+-+++++|+|..|..+++....
T Consensus 27 ~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~ 60 (171)
T 2zvf_A 27 PAKLPKTVERFFEEWKDQRKEIERLKSVIADLWA 60 (171)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777888888899999999999999998765
No 19
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.24 E-value=1e+02 Score=21.89 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=20.0
Q ss_pred HHHHHhhhhhhhhhhhhhhhhccccccC
Q 025375 82 AIQSQDKRLDGLKTKITAVRAERDSVSL 109 (253)
Q Consensus 82 ~~~~~~k~i~~lemela~a~~~~~~~~~ 109 (253)
.++.|+.+|..||..|.......+...+
T Consensus 49 ~~~~Le~rl~~le~~l~~~~~~~~~~~~ 76 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEYGVDPTKIRG 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 5678889999999999887654333333
Done!