Query 025375
Match_columns 253
No_of_seqs 264 out of 1083
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 09:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025375.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025375hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 60.2 9.4 0.00068 27.9 6.2 32 219-250 75-106 (265)
2 d1q90n_ f.23.27.1 (N:) PetN su 49.5 4.3 0.00031 23.0 1.8 22 17-38 7-28 (31)
3 d1xhba2 c.68.1.17 (A:95-422) P 34.6 99 0.0072 24.2 12.4 74 168-248 56-130 (328)
4 d1qg8a_ c.68.1.1 (A:) Spore co 23.4 32 0.0024 26.0 3.8 30 218-247 81-110 (255)
5 d1uklc_ a.38.1.1 (C:) SREBP-2 21.8 42 0.003 21.1 3.5 28 76-103 28-55 (61)
6 d1owxa_ d.58.7.1 (A:) Lupus LA 15.8 89 0.0065 21.3 4.5 40 162-204 6-45 (113)
7 d1s4na_ c.68.1.16 (A:) Glycoli 15.2 30 0.0022 29.6 1.9 16 224-239 135-150 (339)
8 d1uuja_ a.221.1.1 (A:) Lissenc 12.1 46 0.0034 22.4 1.7 25 77-101 51-75 (76)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 11.6 76 0.0055 16.9 2.2 20 19-38 5-24 (27)
10 d1fo8a_ c.68.1.10 (A:) N-acety 11.6 74 0.0054 26.9 3.4 58 186-243 45-117 (343)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.22 E-value=9.4 Score=27.85 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=24.9
Q ss_pred HHhhCCCccEEEEeCCCeEEehHHHHHHHhhc
Q 025375 219 TAVSMWDAEFYIKVDDDVHVNLGKETFYLVLH 250 (253)
Q Consensus 219 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 250 (253)
.+....+.+|++.+|||..+..+.|...++..
T Consensus 75 ~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~ 106 (265)
T d1omza_ 75 QVFPEVETNAVLMVDDDTLISAQDLVFAFSIW 106 (265)
T ss_dssp SCCTTCCSSEEEEECTTEEECHHHHHHHHHHH
T ss_pred hhHHhCCcCEEEEeCcccCCCHHHHHHHHHHH
Confidence 34444578999999999999998888776543
No 2
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=49.53 E-value=4.3 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHhHHhhccc
Q 025375 17 PRKWALFLCACSFCAGMSFTNR 38 (253)
Q Consensus 17 ~~~~~~~l~~~~~~~~~~~~~r 38 (253)
.--|..++++|||-+.+.+-||
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3468999999999999998777
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.55 E-value=99 Score=24.17 Aligned_cols=74 Identities=12% Similarity=0.005 Sum_probs=41.8
Q ss_pred EEEEEeecCCCCCcchHHHHHHHhhhCCC-eEEeeccccCCChhHHHHHHHHHHhhCCCccEEEEeCCCeEEehHHHHHH
Q 025375 168 IIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLGKETFY 246 (253)
Q Consensus 168 ~v~FVvG~s~~~~~~~~~~I~~E~~~ygD-IL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 246 (253)
.++.|=..|. ++.....+++-.+.+.+ |.++...++. ..+. +...+......+|++.+|+|+.+.++.|...
T Consensus 56 EIIvVDdgS~--d~~~~~~l~~~~~~~~~~i~vi~~~~n~-G~~~----a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l 128 (328)
T d1xhba2 56 EIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLIR----ARLKGAAVSRGQVITFLDAHCECTAGWLEPL 128 (328)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEEEESSEEECTTCHHHH
T ss_pred EEEEEECCCC--hhhHHHHHHHHHHhcCCCeEEEEecccc-cchH----HHHHHHHhhhcceeeecCcccccChhHHHHH
Confidence 4544443332 33444445554556655 3334333322 2222 3344455557899999999999998877655
Q ss_pred Hh
Q 025375 247 LV 248 (253)
Q Consensus 247 L~ 248 (253)
+.
T Consensus 129 ~~ 130 (328)
T d1xhba2 129 LA 130 (328)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=23.42 E-value=32 Score=26.01 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=22.2
Q ss_pred HHHhhCCCccEEEEeCCCeEEehHHHHHHH
Q 025375 218 ATAVSMWDAEFYIKVDDDVHVNLGKETFYL 247 (253)
Q Consensus 218 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 247 (253)
..+....+.+|++.+|+|.++.++.|...+
T Consensus 81 N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~ 110 (255)
T d1qg8a_ 81 NQAIEMAEGEYITYATDDNIYMPDRLLKMV 110 (255)
T ss_dssp HHHHHHCCCSEEEEEETTEEECTTHHHHHH
T ss_pred cccccccccccccccccccccccchHHHHH
Confidence 344444578999999999999987666443
No 5
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.76 E-value=42 Score=21.08 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHhhhhhhhhhhhhhhhhc
Q 025375 76 LAMVEQAIQSQDKRLDGLKTKITAVRAE 103 (253)
Q Consensus 76 v~~t~~~~~~~~k~i~~lemela~a~~~ 103 (253)
+.++-+=|+.|++.+..|++|...-++.
T Consensus 28 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 55 (61)
T d1uklc_ 28 LRKAIDYIKYLQQVNHKLRQENMVLKLA 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999888764
No 6
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.77 E-value=89 Score=21.27 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=30.6
Q ss_pred hccCceEEEEEeecCCCCCcchHHHHHHHhhhCCCeEEeeccc
Q 025375 162 EEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE 204 (253)
Q Consensus 162 ~~~~~i~v~FVvG~s~~~~~~~~~~I~~E~~~ygDIL~ld~~D 204 (253)
+...|..++||=+.+. ......|.+--.+||+|..+++..
T Consensus 6 ~~~~g~~~~fvgnL~~---~~tee~Lk~~F~~fG~V~~v~i~~ 45 (113)
T d1owxa_ 6 EEKIGCLLKFSGDLDD---QTCREDLHILFSNHGEIKWIDFVR 45 (113)
T ss_dssp SCCCCCEEEEEESCCS---SCCHHHHHHHTCSSCCEEEEECCT
T ss_pred CCCCCCeEEEECCCCC---CCCHHHHHHHHHhcCChheEEEec
Confidence 3467888888866664 355678888899999999999764
No 7
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.15 E-value=30 Score=29.57 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=14.1
Q ss_pred CCccEEEEeCCCeEEe
Q 025375 224 WDAEFYIKVDDDVHVN 239 (253)
Q Consensus 224 ~~a~F~lKvDDDvfVn 239 (253)
-+++||+++|||+++.
T Consensus 135 ~~YdYywRvdpD~~f~ 150 (339)
T d1s4na_ 135 EEYDWYWRVEPDIKLY 150 (339)
T ss_dssp TTCSEEEECCTTCEEC
T ss_pred hccceEEEeCCCcEEe
Confidence 3799999999999874
No 8
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.07 E-value=46 Score=22.42 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.9
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhh
Q 025375 77 AMVEQAIQSQDKRLDGLKTKITAVR 101 (253)
Q Consensus 77 ~~t~~~~~~~~k~i~~lemela~a~ 101 (253)
.+.--+|-.|+|+|-.||.++++++
T Consensus 51 EKKWtSViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 51 EKKWTSVIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444488899999999999998764
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.61 E-value=76 Score=16.91 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhHHhhccc
Q 025375 19 KWALFLCACSFCAGMSFTNR 38 (253)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~r 38 (253)
-|+.+|.+|..-..|.+-||
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 48889999998888888776
No 10
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.59 E-value=74 Score=26.94 Aligned_cols=58 Identities=12% Similarity=-0.063 Sum_probs=34.2
Q ss_pred HHHHHhhhCCCeEEe-ecc---cc---CC----ChhHHHHHHHHHH----hhCCCccEEEEeCCCeEEehHHH
Q 025375 186 AIDAEEKMHGDFLRL-EHI---EG---YL----ELSAKTKTYFATA----VSMWDAEFYIKVDDDVHVNLGKE 243 (253)
Q Consensus 186 ~I~~E~~~ygDIL~l-d~~---Ds---Y~----nLt~Ktl~~f~wa----~~~~~a~F~lKvDDDvfVnl~~L 243 (253)
...+|.+.|++.+.. ... +. +. +-.++....+.|| -+...++.++.+.||+.+.++-+
T Consensus 45 ~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf 117 (343)
T d1fo8a_ 45 ETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFF 117 (343)
T ss_dssp HHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHH
T ss_pred hHHHHHHHHHHHHHHhcCCccccceecchhhcccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHH
Confidence 456777788764432 111 11 00 1123444445554 34456799999999999998765
Done!