BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025376
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XI00|SKI32_ARATH F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1
Length = 328
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 203/255 (79%), Positives = 235/255 (92%), Gaps = 2/255 (0%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
M PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKILQS+Y+GSWRKMWLL
Sbjct: 74 MMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKILQSKYDGSWRKMWLL 133
Query: 61 RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
R R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGRF+YKNSSQK+KDVA
Sbjct: 134 RSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGRFLYKNSSQKLKDVA 193
Query: 121 KIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDL 178
K MNF+A+K++ ++ G YTL S++K+EAAVLYPG RPTVLRIRLRLRGT GANNRMDL
Sbjct: 194 KYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLRLRGTAIGANNRMDL 253
Query: 179 LSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETS 238
LSLVTSG+ND E++ +EDILG+VEGW+DDETHNPD+PAVSHKRG+T FVFVPFEEV+ S
Sbjct: 254 LSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGMTAFVFVPFEEVDES 313
Query: 239 VLNLPVEKMDYYVPG 253
VLNLP EKMDYYV G
Sbjct: 314 VLNLPPEKMDYYVTG 328
>sp|Q8BK06|FBX9_MOUSE F-box only protein 9 OS=Mus musculus GN=Fbxo9 PE=2 SV=1
Length = 437
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
L + S VCR + R+P WR ACLK W S + K++ SWR+M+L RPR+R
Sbjct: 203 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCM----KLVPY---ASWREMFLERPRVR 255
Query: 66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
DG+Y+S+ TYIR G H V YYRYMRFFP G + + ++ + +
Sbjct: 256 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYMRFFPDGHVMMLTTPEEPPSIVPRLR 315
Query: 125 FRAAKADCVFTGHYTLSEE 143
R + D + GHY LS++
Sbjct: 316 TRNTRTDAILLGHYRLSQD 334
>sp|Q9UK97|FBX9_HUMAN F-box only protein 9 OS=Homo sapiens GN=FBXO9 PE=1 SV=1
Length = 447
Score = 97.8 bits (242), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
L + S VCR + R+P WR ACLK W S + K++ SWR+M+L RPR+R
Sbjct: 213 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCI----KLVPY---TSWREMFLERPRVR 265
Query: 66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
DG+Y+S+ TYIR G H V YYRY+RFFP G + + ++ + + +
Sbjct: 266 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPQSIVPRLR 325
Query: 125 FRAAKADCVFTGHYTLSEE 143
R + D + GHY LS++
Sbjct: 326 TRNTRTDAILLGHYRLSQD 344
>sp|Q3ZBT2|FBX9_BOVIN F-box only protein 9 OS=Bos taurus GN=FBXO9 PE=2 SV=2
Length = 437
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
L + S VCR + R+P WR ACLK W S + K++ SWR+M+L RPR+R
Sbjct: 203 LEQLSQVCRGFYICARDPEIWRLACLKVWGRSCI----KLVPY---TSWREMFLERPRVR 255
Query: 66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
DG+Y+S+ TYIR G H V YYRY+RFFP G + + ++ + + +
Sbjct: 256 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYVRFFPDGHVMMLTTPEEPQSIVPRLR 315
Query: 125 FRAAKADCVFTGHYTLSEE 143
R + D + GHY LS++
Sbjct: 316 TRNTRTDAILLGHYRLSQD 334
>sp|Q5U2X1|FBX9_RAT F-box only protein 9 OS=Rattus norvegicus GN=Fbxo9 PE=2 SV=1
Length = 435
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
L + S VCR + R+P WR ACLK W S + K++ SWR+M+L RPR+R
Sbjct: 201 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCM----KLVPF---SSWREMFLERPRVR 253
Query: 66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
DG+Y+S+ TYIR G H V YYRY+RFFP G + + ++ + +
Sbjct: 254 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPPSIVPRLR 313
Query: 125 FRAAKADCVFTGHYTLSEE 143
R + D + GHY LS++
Sbjct: 314 TRNTRTDAILLGHYRLSQD 332
>sp|F6Y9J3|FBX9_XENTR F-box only protein 9 OS=Xenopus tropicalis GN=fbxo9 PE=3 SV=1
Length = 431
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
L + S VC+ + R+P WR ACLK W + V KI+ +WR+M+L RPR+R
Sbjct: 196 LEQLSLVCKGFYICARDPEIWRLACLKVWGRNCV----KIVPY---TTWRQMFLERPRVR 248
Query: 66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
DG+Y+S+ TYIR G H V YYRY+RFFP G + + + + + +
Sbjct: 249 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYLRFFPDGHVMMLTTPEDPQTIVPRLR 308
Query: 125 FRAAKADCVFTGHYTLSEE 143
+ A+ D + GHY LS++
Sbjct: 309 TKNARTDAMLLGHYRLSQD 327
>sp|Q6P3K3|FBX9_DANRE F-box only protein 9 OS=Danio rerio GN=fbxo9 PE=2 SV=1
Length = 421
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 8/147 (5%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
L + S VCR + R+P WR+ACL+ W S K+L SWR+M+L RPR+R
Sbjct: 186 LEQLSLVCRGFYICARDPEIWRSACLRVWGRSCT----KMLPY---SSWREMFLERPRVR 238
Query: 66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
DG+Y+S+ +YIR G H V YYRY+RFFP G+ + + + +
Sbjct: 239 FDGVYISKTSYIRQGEESLDGFYRAWHQVEYYRYLRFFPDGQVMMLTTPEDPLVTVPRLR 298
Query: 125 FRAAKADCVFTGHYTLSEEKVEAAVLY 151
+ ++ D + GHY LS++ +Y
Sbjct: 299 SKNSRMDSIMFGHYRLSQDTDNQTKVY 325
>sp|O74531|POF7_SCHPO F-box protein pof7 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=pof7 PE=1 SV=2
Length = 361
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 6 LGKASCVCRKWKYTIRNPVFWRNACL-----KAWQLSGVVENYKILQSRYEGSWRKMWLL 60
L + C+ + +R +R+ C K WQ S + + L +Y+ SW+ ++L
Sbjct: 137 LSSIALTCKHFAKALRADSLYRSFCYCSCEQKEWQQS-IKSIEEELVEKYQQSWKTLFLK 195
Query: 61 RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
+PR R DG Y+S Y R G ++ P+H++ YYRY+R +P+ I SS + DV
Sbjct: 196 KPRSRFDGCYISVCRYFRPGTSDTSWNQPIHLITYYRYLRLYPNSTCIVYQSSNEPNDVV 255
Query: 121 KIMNFR-------------AAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 167
+ + + + + TG ++++ E ++YP + +L++RG
Sbjct: 256 RNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSG-EMLIVYPASQTYTYVQKLQVRG 314
>sp|Q12347|HRT3_YEAST F-box protein HRT3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=HRT3 PE=1 SV=1
Length = 344
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 33 AWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGV---AEWKITNP 89
A L+G+ + + + G +M RP I+ +G+Y+S Y+R G + + P
Sbjct: 161 AMDLNGITDINTFEKEIWRGDDYRMLRERPYIKFEGVYISVVNYVRYGSNAESSLSLLKP 220
Query: 90 VHIVCYYRYMRFFPSGR 106
VH++ YYRY RF+ +G+
Sbjct: 221 VHMITYYRYFRFYENGQ 237
>sp|Q9P7W4|POF10_SCHPO F-box/WD repeat-containing protein pof10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pof10 PE=1 SV=1
Length = 662
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
+ P L A C C+ WK + + + WR A + + +I G+WR+ +LL
Sbjct: 46 LDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHF----AGDQSQIFSPLGNGTWRQEYLL 101
Query: 61 RPRI 64
R I
Sbjct: 102 RSTI 105
>sp|Q4KLI9|FBXW5_RAT F-box/WD repeat-containing protein 5 OS=Rattus norvegicus
GN=Fbxw5 PE=2 SV=1
Length = 569
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
+ P D+ A VCR+W+ R+ WR + +Q++ V + S YE +R+++ +
Sbjct: 21 LGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDVPRHPAATSWYE-EFRRLYDM 79
Query: 61 RPRIRIDGL 69
P + + L
Sbjct: 80 VPCVEVQTL 88
>sp|Q9QXW2|FBXW5_MOUSE F-box/WD repeat-containing protein 5 OS=Mus musculus GN=Fbxw5
PE=1 SV=1
Length = 573
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
+ P D+ A VCR+W+ R+ W+ + +Q++ V + S YE +R+++ +
Sbjct: 21 LGPADVLAAGLVCRQWQAVSRDEFLWKEQFYRYYQVARDVPRHPAATSWYE-EFRRLYDM 79
Query: 61 RPRIRIDGL 69
P + + L
Sbjct: 80 VPCVEVQTL 88
>sp|Q8W420|ADO2_ARATH Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1
Length = 611
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWL 59
++P D+ CVCR+ +N WR C W E ++L+S G+ R W+
Sbjct: 214 LTPGDIASVGCVCRRLNELTKNDDVWRMVCQNTWG----TEATRVLES-VPGAKRIGWV 267
>sp|Q5Z8K3|ADO1_ORYSJ Adagio-like protein 1 OS=Oryza sativa subsp. japonica
GN=Os06g0694000 PE=2 SV=1
Length = 630
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAW 34
+SP D+ S VCR+ RN WR C AW
Sbjct: 234 LSPRDIASVSSVCRRLYLLTRNEDLWRMVCQNAW 267
>sp|Q9VZF4|FBXW7_DROME F-box/WD repeat-containing protein 7 OS=Drosophila melanogaster
GN=ago PE=1 SV=1
Length = 1326
Score = 34.3 bits (77), Expect = 0.97, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLS 37
+ P DL +A+ CR W++ + + W+ C KA L+
Sbjct: 907 LEPKDLLRAAQTCRSWRFLCDDNLLWKEKCRKAQILA 943
>sp|Q969U6|FBXW5_HUMAN F-box/WD repeat-containing protein 5 OS=Homo sapiens GN=FBXW5
PE=1 SV=1
Length = 566
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
+ P D+ A VCR+W+ R+ WR + +Q++ V + S YE +++++
Sbjct: 21 LGPADVLAAGLVCRQWQAVSRDEFLWREQFYRYYQVARDVPRHPAAMSWYE-EFQRLYDT 79
Query: 61 RPRIRIDGL 69
P + + L
Sbjct: 80 VPCVEVQTL 88
>sp|Q3T0J1|FBX4_BOVIN F-box only protein 4 OS=Bos taurus GN=FBXO4 PE=2 SV=1
Length = 387
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 32
+SP+DL + R W T+R+P+ WR L+
Sbjct: 74 LSPHDLCQLGSTSRYWNETVRDPILWRYFLLR 105
>sp|A5VCW6|TYSY_SPHWW Thymidylate synthase OS=Sphingomonas wittichii (strain RW1 / DSM
6014 / JCM 10273) GN=thyA PE=3 SV=1
Length = 308
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 24 VFWRNACLK-AWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIR---- 78
+FW++A + W LSG N + L + W W L + G + R+ + R
Sbjct: 56 IFWKSAIKELIWFLSGDT-NIRPLVMQNVHIWTD-WPLDKYRKATGEAIDRDAFERRIVD 113
Query: 79 --AGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADC---V 133
A AEW PV+ + + R+ P+G +++ + + +A+++ A +
Sbjct: 114 DPAFAAEWGDLGPVYGKQWVDWPRYTPAGDGLFRREEKGVNQIAELVGMLRANPSSRRLI 173
Query: 134 FTG 136
FTG
Sbjct: 174 FTG 176
>sp|Q67UX0|ADO2_ORYSJ Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica
GN=Os02g0150800 PE=3 SV=1
Length = 635
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAW 34
+SP D+ + VC++ + RN WR C AW
Sbjct: 227 LSPRDIASVNSVCKRLYHLTRNDDLWRMVCQNAW 260
>sp|Q94BT6|ADO1_ARATH Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2
Length = 609
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMW 58
++P D+ S VCR+ +N WR C AW E ++L++ G+ R W
Sbjct: 213 LTPRDVASVSSVCRRLYVLTKNEDLWRRVCQNAWG----SETTRVLET-VPGAKRLGW 265
>sp|Q43845|SPSA_SOLTU Probable sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS
PE=2 SV=1
Length = 1053
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 110 KNSSQKIKDVAKIMNFRAAKADCVFTGHYTLS---EEKVEAAVLYPGLRPTVLR-IRLRL 165
+ S +I KIM A+ + ++ +E E LY G P + R +R R+
Sbjct: 351 RKSKDEINSTYKIMRRIEAEELTLDASEIVITSTRQEIDEQWRLYDGFDPILERKLRARI 410
Query: 166 RGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDV 215
+ + M ++++ GM + + H+ D+ G EG +D +T +P +
Sbjct: 411 KRNVSCYGRFMPRMAVIPPGMEFHHIVPHEGDMDGETEGSEDGKTPDPPI 460
>sp|Q87NE7|RIBA_VIBPA GTP cyclohydrolase-2 OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ribA PE=3 SV=1
Length = 198
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 125 FRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTS 184
F +++ DC E++E + G V+ + LR G G N++D L +
Sbjct: 63 FHSSRCDC---------GEQLEETIQRMGESGGVI-LYLRQEGRGIGLYNKIDAYRLQSQ 112
Query: 185 GMNDNEVNGH---DEDILGVVEGWQ 206
GMN E N H D+D+ E Q
Sbjct: 113 GMNTYEANNHLGFDDDLRDFTEAAQ 137
>sp|Q9FL82|FB270_ARATH F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2
SV=1
Length = 252
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 5 DLGKASCVCRKWKYTIRNPVFWRNACLKAW 34
DL VC++W+ R+ +W+ C K W
Sbjct: 18 DLASCMGVCKQWRDIARDDFYWKCQCAKKW 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,848,418
Number of Sequences: 539616
Number of extensions: 4136522
Number of successful extensions: 7810
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7776
Number of HSP's gapped (non-prelim): 33
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)