Query 025376
Match_columns 253
No_of_seqs 156 out of 246
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e31_A FBS1, F-box only protei 98.2 1.2E-06 4E-11 80.4 4.3 59 1-65 66-125 (297)
2 1fs1_A SKP2 F-BOX, cyclin A/CD 97.8 7.6E-06 2.6E-10 55.4 2.2 29 1-29 24-52 (53)
3 1p22_A F-BOX/WD-repeat protein 97.5 4E-05 1.4E-09 69.3 3.0 34 1-34 30-63 (435)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.5 6.4E-05 2.2E-09 67.9 3.9 64 1-64 34-99 (445)
5 3l2o_B F-box only protein 4; s 97.4 8.5E-05 2.9E-09 68.5 3.5 32 1-32 20-51 (312)
6 3v7d_B Cell division control p 97.2 0.00021 7.1E-09 64.4 3.7 34 1-34 30-64 (464)
7 4hfx_A Transcription elongatio 90.1 0.26 9E-06 38.0 3.8 47 3-60 27-73 (97)
8 2ast_B S-phase kinase-associat 86.2 0.19 6.4E-06 43.6 0.8 31 1-31 24-54 (336)
9 4gzv_A Hypothetical protein; A 46.6 32 0.0011 28.1 5.3 88 101-211 41-133 (142)
10 2p1m_B Transport inhibitor res 43.5 11 0.00038 34.8 2.4 19 1-19 21-40 (594)
11 3ogk_B Coronatine-insensitive 36.1 15 0.00053 33.9 2.1 18 2-19 30-47 (592)
12 3ol0_A De novo designed monome 26.0 28 0.00097 23.3 1.5 21 98-118 18-38 (48)
13 2k3u_B C5AR(P7-28S) peptide, c 24.0 28 0.00095 20.1 1.0 16 232-247 9-24 (26)
14 4i95_A Putative uncharacterize 20.6 2.1E+02 0.0071 23.2 5.9 88 101-211 41-133 (142)
15 3e0r_A C3-degrading proteinase 20.4 71 0.0024 28.1 3.4 40 203-250 128-167 (244)
No 1
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.15 E-value=1.2e-06 Score=80.36 Aligned_cols=59 Identities=19% Similarity=0.457 Sum_probs=46.2
Q ss_pred CCHHHHH-HHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHhcccCc
Q 025376 1 MSPYDLG-KASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65 (253)
Q Consensus 1 LDp~sL~-rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~RPRIR 65 (253)
|++.+|. |+++|||.|+.|+.++.+||+.|.+.+-..... ......+||++|+.+|+-|
T Consensus 66 Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~------~~~~~~~Wk~~y~~~~~gR 125 (297)
T 2e31_A 66 LPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS------ADEERDHWQQFYFLSKRRR 125 (297)
T ss_dssp SCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----------CCSCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc------cCCCCCChhhhheheeccc
Confidence 7899999 999999999999999999999999874322111 1123578999999998665
No 2
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.80 E-value=7.6e-06 Score=55.40 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhChHHHHhccCchHHHHH
Q 025376 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNA 29 (253)
Q Consensus 1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~l 29 (253)
|++.++.++|+|||.|+.++.++.+||.+
T Consensus 24 L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 24 LCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp SCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 68899999999999999999999999975
No 3
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.50 E-value=4e-05 Score=69.31 Aligned_cols=34 Identities=18% Similarity=0.483 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhc
Q 025376 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAW 34 (253)
Q Consensus 1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w 34 (253)
||+.+|.++|+|||+|+.++.++.+||++|.+.+
T Consensus 30 l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~ 63 (435)
T 1p22_A 30 LDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (435)
T ss_dssp CCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence 7999999999999999999999999999999864
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.47 E-value=6.4e-05 Score=67.87 Aligned_cols=64 Identities=22% Similarity=0.517 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCch-hhhhh-hccCCCCcHHHHHHhcccC
Q 025376 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVV-ENYKI-LQSRYEGSWRKMWLLRPRI 64 (253)
Q Consensus 1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~-~~~~~-~~~~y~~sWr~Mf~~RPRI 64 (253)
||+.+|.++++|||.|+.++.++.+||++|.+........ ...+. -......+||..|.+|.++
T Consensus 34 l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~~~ 99 (445)
T 2ovr_B 34 LEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 99 (445)
T ss_dssp SCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhhhh
Confidence 7999999999999999999999999999998643221110 00000 0111236799998876543
No 5
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.38 E-value=8.5e-05 Score=68.47 Aligned_cols=32 Identities=34% Similarity=0.755 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhChHHHHhccCchHHHHHHHh
Q 025376 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLK 32 (253)
Q Consensus 1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~ 32 (253)
|+|.+|+++++|||.|+.++.++.|||.+|.+
T Consensus 20 L~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~r 51 (312)
T 3l2o_B 20 LSPHDLCQLGSTNHYWNETVRDPILWRYFLLR 51 (312)
T ss_dssp SCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHhc
Confidence 79999999999999999999999999999996
No 6
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.17 E-value=0.00021 Score=64.40 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHhChHHHHhccC-chHHHHHHHhhc
Q 025376 1 MSPYDLGKASCVCRKWKYTIRN-PVFWRNACLKAW 34 (253)
Q Consensus 1 LDp~sL~rlS~VCk~f~~l~~~-~~lWR~lC~~~w 34 (253)
||+.+|.++++|||.|+.++.+ +.+||++|++..
T Consensus 30 l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~ 64 (464)
T 3v7d_B 30 LQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 64 (464)
T ss_dssp SCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence 7999999999999999999998 799999998654
No 7
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=90.13 E-value=0.26 Score=38.02 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=24.0
Q ss_pred HHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHh
Q 025376 3 PYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60 (253)
Q Consensus 3 p~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~ 60 (253)
|.-|.++=.-|- ..+-.++.||+.+|.+-|+.... .-..|||+||..
T Consensus 27 p~QL~~IE~~nP--~L~~dTdeLWk~~c~rdF~~~~p---------~e~esWRelY~r 73 (97)
T 4hfx_A 27 PDQLYRIEEYNH--VLIEETDQLWKVHCHRDFKEERP---------EEYESWREMYLR 73 (97)
T ss_dssp HHHHHHHHTC--------CCHHHHHHHC----CCSCC---------CSSSCHHHHHHH
T ss_pred HHHHHHHHHhCc--ccchhhHHHHHHHHHhHCcccCC---------CCCCCHHHHHHH
Confidence 444444444443 22345669999999999975321 234799999874
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=86.20 E-value=0.19 Score=43.57 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhChHHHHhccCchHHHHHHH
Q 025376 1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACL 31 (253)
Q Consensus 1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~ 31 (253)
|+..++.++|+|||+|+.++.++.+|+.+-.
T Consensus 24 L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l 54 (336)
T 2ast_B 24 LCLPELLKVSGVCKRWYRLASDESLWQTLDL 54 (336)
T ss_dssp SCHHHHHHTTSSCHHHHHHHTCSTTSSEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCchhheeecc
Confidence 6788999999999999999988988886544
No 9
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=46.62 E-value=32 Score=28.09 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=53.3
Q ss_pred EecCCcEEEeeccccHHHHhhhhcccccCCCceEEEEEEEeCCEEEEEEe-----cCCCcceEEEEEEEEecCCCCccce
Q 025376 101 FFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNR 175 (253)
Q Consensus 101 FfpDGtvl~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~v~-----~~g~~~~~f~~~L~lrs~~~g~nnk 175 (253)
..+|||+..++....... -=...|.|.+..|....+-+ .|-...+...+++++... |.
T Consensus 41 lS~DgtF~N~~m~~~~~a------------iIt~yGtY~l~SD~~Y~E~i~kni~~p~~~g~~n~L~fe~~~d-----n~ 103 (142)
T 4gzv_A 41 LSDDGRIVNFTIIPGADA------------IITGYGTYKQLTDDSYKESIEKNIHLPMLDNQDNILEFEIKDN-----DY 103 (142)
T ss_dssp ECTTSEEEEEECCTTSCC------------EEEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEEETT-----TE
T ss_pred ECCCCcEEEEEEeCCCCc------------EEEEeEEEEecCCCeeeeeecccccCccccCCccEEEEEEccC-----CE
Confidence 689999877764221111 12457999998883333322 232334455677777663 77
Q ss_pred eEEeEeEEecCCCCCCCCCCCcccccccccccCCCC
Q 025376 176 MDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETH 211 (253)
Q Consensus 176 L~w~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (253)
|...-+..-+.+++|++.|- -|-|.-.+.+
T Consensus 104 l~lsy~~~~~~~G~e~~~w~------~E~W~RV~~P 133 (142)
T 4gzv_A 104 LHLKYFIKSDLNGNELNTWY------YETWKRVEMP 133 (142)
T ss_dssp EEEEEEEEECTTCCEEEEEE------EEEEEECBCC
T ss_pred EEEEEEccCCCCCcccCCce------EEEEEecCCC
Confidence 87777888888888765541 2556665444
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=43.48 E-value=11 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=17.2
Q ss_pred CC-HHHHHHHHHhChHHHHh
Q 025376 1 MS-PYDLGKASCVCRKWKYT 19 (253)
Q Consensus 1 LD-p~sL~rlS~VCk~f~~l 19 (253)
|+ +.++.++|+|||+|+.+
T Consensus 21 L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 21 IQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp CCCHHHHHHHHTSCHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHh
Confidence 45 88999999999999988
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=36.09 E-value=15 Score=33.92 Aligned_cols=18 Identities=44% Similarity=0.783 Sum_probs=16.7
Q ss_pred CHHHHHHHHHhChHHHHh
Q 025376 2 SPYDLGKASCVCRKWKYT 19 (253)
Q Consensus 2 Dp~sL~rlS~VCk~f~~l 19 (253)
++.++.++|+|||+|+.+
T Consensus 30 ~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 30 DPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHhHHHHHh
Confidence 688999999999999988
No 12
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=26.02 E-value=28 Score=23.26 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=15.0
Q ss_pred eEEEecCCcEEEeeccccHHH
Q 025376 98 YMRFFPSGRFIYKNSSQKIKD 118 (253)
Q Consensus 98 YLRFfpDGtvl~llS~~~P~~ 118 (253)
|||.+|||++----....|..
T Consensus 18 ~LqI~PdG~V~GTr~~~s~~S 38 (48)
T 3ol0_A 18 YLRINPDGTVDGTRDRSDPHI 38 (48)
T ss_dssp EEEECTTSBEEEESCTTCGGG
T ss_pred EeEECCCCCCccccCCCCCcc
Confidence 899999999876554444433
No 13
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=24.01 E-value=28 Score=20.07 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.1
Q ss_pred cccccccccCCCcccc
Q 025376 232 FEEVETSVLNLPVEKM 247 (253)
Q Consensus 232 ~e~~~~~~ln~~~~~m 247 (253)
+++-+|-.||-||+|.
T Consensus 9 yddkdtldlntpvdk~ 24 (26)
T 2k3u_B 9 YDDKDTLDLNTPVDKX 24 (26)
T ss_dssp ECSSSCCBTTCCCCC-
T ss_pred cCCccccccCCccccc
Confidence 5778889999999985
No 14
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=20.61 E-value=2.1e+02 Score=23.21 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=51.9
Q ss_pred EecCCcEEEeeccccHHHHhhhhcccccCCCceEEEEEEEeCCEEEEEEe-----cCCCcceEEEEEEEEecCCCCccce
Q 025376 101 FFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVL-----YPGLRPTVLRIRLRLRGTTAGANNR 175 (253)
Q Consensus 101 FfpDGtvl~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~v~-----~~g~~~~~f~~~L~lrs~~~g~nnk 175 (253)
...||++.-.+.. | . +..--...|.|++..|....+-+ .|-...+...|++.+... |.
T Consensus 41 lSdDgtF~Ni~m~--~-------~---~~aiIt~~GtY~~~SD~~Y~E~IeKni~lp~l~g~~N~l~fE~~~d-----nl 103 (142)
T 4i95_A 41 LSDDGRIVNFTIR--P-------G---TDAIITGYGTYRQISAAAYKESIEKNIHLPMLDNKDNILEFEMGAG-----GV 103 (142)
T ss_dssp ECTTSEEEEEECC--T-------T---SCCEEEEEEEEEEEETTEEEEEEEEESSSGGGTTEEEEEEEEECST-----TE
T ss_pred EcCCCcEEEEEEe--c-------C---CCcEEEEeEEEEecCCcceeeeecccccCcccCCCccEEEEEEccC-----CE
Confidence 4678887666554 1 0 11123567999998884333333 222233445677776553 66
Q ss_pred eEEeEeEEecCCCCCCCCCCCcccccccccccCCCC
Q 025376 176 MDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETH 211 (253)
Q Consensus 176 L~w~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (253)
+.+.-|..-+++++|++.| ..|-|--.+.+
T Consensus 104 m~lky~~~~dl~G~e~~~w------~~E~W~RV~mP 133 (142)
T 4i95_A 104 MYLKYFIEKDLNGNELNTW------FHETWKRVTMP 133 (142)
T ss_dssp EEEEEEEEECTTSCEEEEE------EEEEEEECCCC
T ss_pred EEEEEEeeccCCCCccCCc------eEEEEEeccCC
Confidence 6666678888998876553 23667766554
No 15
>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural GE protein structure initiative; 2.30A {Streptococcus pneumoniae}
Probab=20.41 E-value=71 Score=28.10 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=27.5
Q ss_pred cccccCCCCCCCCCcccccCCCcceeeeecccccccccCCCcccccee
Q 025376 203 EGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYY 250 (253)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~rg~~~~~fvp~e~~~~~~ln~~~~~md~~ 250 (253)
+.|++.++. ++..+..+-.||+.|.| .|+-+|.|+-.+ ||
T Consensus 128 ~~l~~v~~~-~~l~~~~~~~gLs~fti----~I~LnV~d~~~s---Fy 167 (244)
T 3e0r_A 128 ASLVEVGEK-PEFQTDLASISLSKFEI----SMELHLPTDIES---FL 167 (244)
T ss_dssp GGCEECSSC-CCCCCCCSCCCCSSEEE----EEEEEECTTCCC---SC
T ss_pred HHhhcccch-hhccccccccCCCCcEE----EEEEEcCchHHH---Hh
Confidence 447655333 33444555779999996 999999998554 66
Done!