Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>025378
MSQSSQHVFTNSPPSCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDYTPFK
FIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLWSRVLACGVVSLVCGVWI
GAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFR
VTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQVSPITWFYHLS
VLTVSIWNQYRHI

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025378
        (253 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171865 - symbol:AT5G65250 "AT5G65250" species...   388  2.2e-42   2


>TAIR|locus:2171865 [details] [associations]
            symbol:AT5G65250 "AT5G65250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009941 "chloroplast envelope" evidence=IDA]
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009941 EMBL:AB013395
            UniGene:At.9297 EMBL:AY045959 EMBL:AY079347 IPI:IPI00541339
            RefSeq:NP_569009.1 UniGene:At.74060 STRING:Q9FJP0 PaxDb:Q9FJP0
            PRIDE:Q9FJP0 EnsemblPlants:AT5G65250.1 GeneID:836650
            KEGG:ath:AT5G65250 TAIR:At5g65250 eggNOG:NOG310958
            HOGENOM:HOG000152506 InParanoid:Q9FJP0 OMA:ICKGARE PhylomeDB:Q9FJP0
            ProtClustDB:CLSN2917793 ArrayExpress:Q9FJP0 Genevestigator:Q9FJP0
            Uniprot:Q9FJP0
        Length = 300

 Score = 388 (141.6 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 81/125 (64%), Positives = 99/125 (79%)

Query:   105 RVLACGVVSLVCGVWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATI 164
             +VL+ G V LV  V  G+ +RRRQW R+C     +EG    NL+ R+EKLE+D+KSS +I
Sbjct:   129 KVLSLGFVGLVGSVATGSWLRRRQWMRICKGARESEG---TNLIRRLEKLEKDLKSSTSI 185

Query:   165 LRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKV 224
             +RVLSR LEKLG+RFRVTRKALK+PI++ AALAQKNSEATR L  Q ++LEKELGEIQKV
Sbjct:   186 VRVLSRHLEKLGIRFRVTRKALKEPISETAALAQKNSEATRVLVAQQEILEKELGEIQKV 245

Query:   225 LLAMQ 229
             LLAMQ
Sbjct:   246 LLAMQ 250

 Score = 77 (32.2 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 32/122 (26%), Positives = 60/122 (49%)

Query:     1 MSQSSQH-VFTNSPP---SCSSRFTFYHSATNLIKNPNNLALPPPITSRHLLIHISHNDY 56
             +S  S++ +F+ S P   S  S   F  SA    +  ++++ P PI  RH+ I    N  
Sbjct:     3 LSLPSRYALFSGSTPVRISRRSNLCFAVSAARASRR-DSISFPQPIFLRHV-ISTQSNFE 60

Query:    57 TPFKFIPNSKFYHSLKPNNCSNTSVVTTQTNDNFNLDSLLSISEVLWSRVLACGVVSLVC 116
                 +  ++    S + ++ SN  ++   ++D F+L S +S +E L   +L+  V+S+V 
Sbjct:    61 IDRNYRAHASSIGSFEDSSSSN--LLEDASSDGFDLGSFVSFAEALC--ILSSAVISVVL 116

Query:   117 GV 118
              V
Sbjct:   117 AV 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       253   0.00083  114 3  11 22  0.42    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  197 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.53u 0.13s 24.66t   Elapsed:  00:00:02
  Total cpu time:  24.53u 0.13s 24.66t   Elapsed:  00:00:02
  Start:  Fri May 10 06:46:50 2013   End:  Fri May 10 06:46:52 2013

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