BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025378
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=sudA PE=2 SV=3
Length = 1215
Score = 36.2 bits (82), Expect = 0.23, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 126 RRQWRRVCGEKARAEGRESV-------NLVGRIEKL--------EED----MKSSATILR 166
RR+++ + G+++ E R+SV NL R+++L +ED +K + +
Sbjct: 814 RREYQELSGKRSELETRKSVLEVELRENLNPRLDQLLAQDADIADEDGQGNIKETQREQK 873
Query: 167 VLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225
L++ L+KL R ++++ ++ L Q+N+E+ R L +EK ++K +
Sbjct: 874 RLTKVLDKLAQRLAQVDESMEQANSRVTELTQRNAESRRELEELAKSIEKHQRRMEKSM 932
>sp|Q6URW6|MYH14_MOUSE Myosin-14 OS=Mus musculus GN=Myh14 PE=1 SV=1
Length = 2000
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 126 RRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRV---LSRQLEKLGVRFRVT 182
R Q + E + RE L GR+ +LEE+ A LR L + E+ R
Sbjct: 878 RAQELQKVQELQQQSAREVGELQGRVAQLEEERTRLAEQLRAEAELCSEAEETRARLAAR 937
Query: 183 RKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLA 227
++ L+ +T+ A + E +R L + L++ + E++ L A
Sbjct: 938 KQELELVVTELEARVGEEEECSRQLQSEKKRLQQHIQELESHLEA 982
>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2
Length = 1976
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 135 EKARAEGRESVNLVGRIEKLEEDMKS-------SATILRVLSRQLEKLGVRFRVTRKALK 187
E + E R+ +NL RI +LEE+ S R L +QL+ L + T+K +
Sbjct: 1322 ELLQEETRQKLNLSSRIRQLEEERSSLQEQQEEEEEARRSLEKQLQALQAQLTDTKKKVD 1381
Query: 188 DPITQAAALAQKNSEATRALAMQGDVLEKELGE 220
D + L EA + L +VL + L E
Sbjct: 1382 DDLGTIENL----EEAKKKLLKDVEVLSQRLEE 1410
>sp|Q6F3J0|NFKB1_CANFA Nuclear factor NF-kappa-B p105 subunit OS=Canis familiaris GN=NFKB1
PE=2 SV=2
Length = 972
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 133 CGEKARAEGRESVNLVGRI-EKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPIT 191
CG+ RE+VNL G++ E E+D +SS + V +G++ +R +
Sbjct: 446 CGKNVD---REAVNLSGKVTEPTEQDKESSMGVDEVTLTY--TVGIKEENSRFQDNLFLE 500
Query: 192 QAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQVSPITWFYHLSVL 242
+A LA++++ A A+ GDV K L +Q+ L A+Q HL+++
Sbjct: 501 KAMQLAKRHANALFDYAVTGDV--KMLLAVQRHLTAVQDENGDSVLHLAII 549
>sp|A9KMW7|SYA1_CLOPH Alanine--tRNA ligase 1 OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=alaS1 PE=3 SV=1
Length = 879
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 135 EKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAA 194
E A+ E +LV RIE L+E++K++ + + EKL + ++ +L D + Q
Sbjct: 718 EAAKVAKTEPASLVKRIESLQEELKTALS-------ENEKL--KAKLANNSLGDVMNQVV 768
Query: 195 A------LAQKNSEA-TRALAMQGDVLEKELGE 220
LA K ++A L GD L+++LGE
Sbjct: 769 EVKGVKLLASKVTDADMNGLRNLGDQLKEKLGE 801
>sp|Q8CJ40|CROCC_MOUSE Rootletin OS=Mus musculus GN=Crocc PE=1 SV=2
Length = 2009
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 128 QWRRVCGEKARAEGR-ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKAL 186
Q R GE+ E R E++ L R+ K E +++ L+ R+L++ FR + L
Sbjct: 1308 QGRLALGERTEKESRREALGLRQRLLKGESSLEALKQELQGSQRKLQEQEAEFRARERGL 1367
Query: 187 KDPITQAAALAQKNSEATRALAMQGDVLEKELGEI 221
+ +A ++ ++ R+L ++ + + E E+
Sbjct: 1368 LGSLEEARGAEKRLLDSARSLELRLEAVRAETSEL 1402
>sp|O95153|RIMB1_HUMAN Peripheral-type benzodiazepine receptor-associated protein 1
OS=Homo sapiens GN=BZRAP1 PE=1 SV=2
Length = 1857
Score = 31.2 bits (69), Expect = 6.6, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 135 EKARAEGRESVNLVGRIEKLEEDM-KSSATILRVLSRQLEKLGVRFRVTRKALKDPITQA 193
EK R R++ L ++LEE K T LRV+S L + G + RKAL Q
Sbjct: 157 EKVRRLKRKNAELAVIAKRLEERARKLQETNLRVVSAPLPRPGTSLELCRKALA---RQR 213
Query: 194 AALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQVSPITWFY 237
A + + A A Q L++E E+Q L + W +
Sbjct: 214 ARDLSETASALLAKDKQIAALQRECRELQARLTLVGKEGPQWLH 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,138,774
Number of Sequences: 539616
Number of extensions: 3091158
Number of successful extensions: 11129
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 11107
Number of HSP's gapped (non-prelim): 64
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)