Query 025378
Match_columns 253
No_of_seqs 19 out of 21
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 09:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 72.2 29 0.00098 31.2 10.2 61 147-207 461-521 (597)
2 3ghg_A Fibrinogen alpha chain; 66.0 19 0.00065 35.6 8.1 105 147-251 51-159 (562)
3 2dnx_A Syntaxin-12; snare, HAB 64.3 48 0.0016 25.7 9.3 95 143-237 8-116 (130)
4 2jwa_A Receptor tyrosine-prote 59.1 6.2 0.00021 27.1 2.5 17 112-128 23-39 (44)
5 1r8d_A Transcription activator 56.6 17 0.00058 26.6 4.7 42 189-230 61-103 (109)
6 4fm3_A Uncharacterized hypothe 56.0 11 0.00039 29.4 3.8 32 190-221 66-97 (98)
7 2vz4_A Tipal, HTH-type transcr 54.2 11 0.00039 27.6 3.5 29 202-230 74-102 (108)
8 3g67_A Methyl-accepting chemot 52.6 81 0.0028 26.6 8.9 95 147-242 5-99 (213)
9 1i84_S Smooth muscle myosin he 51.9 87 0.003 31.9 10.4 33 145-177 860-892 (1184)
10 1q08_A Zn(II)-responsive regul 44.7 60 0.002 22.8 5.9 30 201-230 38-67 (99)
11 3gpv_A Transcriptional regulat 43.3 54 0.0018 25.5 5.9 30 201-230 94-123 (148)
12 3gp4_A Transcriptional regulat 41.7 84 0.0029 24.4 6.8 45 201-245 80-124 (142)
13 2akf_A Coronin-1A; coiled coil 40.5 33 0.0011 22.4 3.5 23 153-175 3-25 (32)
14 3p7i_A PHND, subunit of alkylp 40.5 1E+02 0.0035 26.2 7.7 63 169-231 244-313 (321)
15 1r8e_A Multidrug-efflux transp 37.6 52 0.0018 26.6 5.2 29 202-230 79-107 (278)
16 2xu6_A MDV1 coiled coil; prote 37.6 31 0.0011 25.9 3.5 66 166-231 3-71 (72)
17 1q06_A Transcriptional regulat 36.3 81 0.0028 24.0 5.9 30 201-230 78-107 (135)
18 3n5l_A Binding protein compone 35.4 1.4E+02 0.0049 24.8 7.7 62 169-230 235-303 (310)
19 2zqm_A Prefoldin beta subunit 34.8 90 0.0031 22.6 5.7 81 147-231 25-113 (117)
20 1m1j_C Fibrinogen gamma chain; 34.2 2.4E+02 0.0083 26.2 9.7 84 146-229 35-118 (409)
21 2qdq_A Talin-1; dimerisation d 32.5 49 0.0017 23.4 3.7 30 206-235 10-41 (50)
22 1deq_A Fibrinogen (alpha chain 32.4 1.6E+02 0.0056 27.9 8.3 100 147-246 54-157 (390)
23 3m91_A Proteasome-associated A 32.2 75 0.0026 22.1 4.6 32 145-176 19-50 (51)
24 3zrx_A AF1503 protein, osmolar 31.6 92 0.0032 20.2 4.8 20 183-202 68-87 (115)
25 4fla_A Regulation of nuclear P 30.7 97 0.0033 25.2 5.7 91 143-238 23-115 (152)
26 3uux_B Mitochondrial division 30.6 77 0.0026 28.3 5.5 70 164-233 157-229 (242)
27 2ovc_A Potassium voltage-gated 30.3 31 0.001 22.5 2.2 20 143-162 4-23 (33)
28 4h22_A Leucine-rich repeat fli 30.0 1.5E+02 0.0053 23.4 6.6 60 146-219 34-93 (103)
29 1fxk_A Prefoldin; archaeal pro 27.9 1.1E+02 0.0038 21.8 5.1 78 147-228 20-105 (107)
30 3efd_K KCSA; helix bundle, C-t 27.2 59 0.002 21.0 3.0 21 199-219 8-28 (30)
31 3na7_A HP0958; flagellar bioge 27.1 1.2E+02 0.0041 25.4 5.9 28 147-174 102-129 (256)
32 3qao_A LMO0526 protein, MERR-l 27.1 77 0.0026 26.8 4.7 28 202-229 76-103 (249)
33 2zhg_A Redox-sensitive transcr 26.9 1.1E+02 0.0037 24.1 5.2 30 202-231 90-119 (154)
34 1t2k_D Cyclic-AMP-dependent tr 26.3 97 0.0033 21.1 4.3 38 190-227 24-61 (61)
35 3hh0_A Transcriptional regulat 25.6 1.3E+02 0.0044 23.4 5.5 46 203-248 81-134 (146)
36 1iij_A ERBB-2 receptor protein 25.6 12 0.0004 24.7 -0.5 19 110-128 17-35 (35)
37 4gif_A Polycystic kidney disea 24.6 87 0.003 21.6 3.8 27 146-172 11-37 (45)
38 3nmd_A CGMP dependent protein 23.8 1.7E+02 0.0058 21.8 5.5 40 190-229 21-60 (72)
39 1zxa_A CGMP-dependent protein 22.7 1.1E+02 0.0037 22.4 4.2 28 149-176 25-52 (67)
40 3ibp_A Chromosome partition pr 22.5 85 0.0029 28.8 4.4 82 149-242 3-84 (302)
41 1fxk_C Protein (prefoldin); ar 22.0 2E+02 0.0068 21.5 5.7 43 190-232 3-45 (133)
42 1kmi_Z CHEZ, chemotaxis protei 21.4 3.7E+02 0.013 22.6 8.0 81 143-224 13-93 (214)
43 1zme_C Proline utilization tra 21.2 73 0.0025 21.0 2.8 21 204-224 46-66 (70)
44 3hh0_A Transcriptional regulat 21.0 1.4E+02 0.0046 23.3 4.8 6 127-132 22-27 (146)
45 1sig_A Sigma70, RNA polymerase 20.9 3.4E+02 0.011 23.1 7.6 39 149-187 155-194 (339)
46 3hrn_A Transient receptor pote 20.6 1.1E+02 0.0038 22.5 3.9 23 146-168 10-32 (64)
47 4dnd_A Syntaxin-10, SYN10; str 20.3 93 0.0032 24.6 3.7 51 127-177 48-102 (130)
48 3kqg_A Langerin, C-type lectin 20.2 1.1E+02 0.0039 22.9 4.1 33 194-227 9-41 (182)
49 2f95_B Sensory rhodopsin II tr 20.2 69 0.0023 22.9 2.7 11 115-125 70-80 (163)
50 3oja_A Leucine-rich immune mol 20.1 4.5E+02 0.015 23.1 8.8 28 198-225 438-465 (487)
51 2dfs_A Myosin-5A; myosin-V, in 20.0 2.8E+02 0.0097 28.5 8.0 6 57-62 669-674 (1080)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.16 E-value=29 Score=31.17 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRAL 207 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraL 207 (253)
+..-+.+||+.....-+.+..+...+++..-+.++...++..+..+....-++..+-...+
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 521 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFK 521 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhh
Confidence 4456777777777777888888888888888888888777777666555555544444433
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.00 E-value=19 Score=35.56 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhc----ceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLG----VRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQ 222 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLG----vRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ 222 (253)
|.+=|.|-|+||...+.=+|..=-+++|.= .-++.+...||.=+.+....-....|++.-|-.|...|+.||.+-=
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444433322222211 1145556666766666666666667778888899999999999888
Q ss_pred HHHHHhhcccchhhhhhhhHHHhhhhhcc
Q 025378 223 KVLLAMQVSPITWFYHLSVLTVSIWNQYR 251 (253)
Q Consensus 223 ~vL~AMQeqq~KQf~~LS~l~~~~~~~~~ 251 (253)
+-+-++|..-++|..-|.+|-|.|=-|.|
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998866644
No 3
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.29 E-value=48 Score=25.68 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=65.6
Q ss_pred ccchHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcce--eeeehhhccchHHHHHHHHhhhhHHHHHHHh-----------
Q 025378 143 ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVR--FRVTRKALKDPITQAAALAQKNSEATRALAM----------- 209 (253)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvR--fRvtrRtLrdPI~etaAlAqknSeatraLA~----------- 209 (253)
.+.++-.=...+-..+-..-+-+.-+.|.+..||.. ..-.|.-|.+=+.+|-.++++.++.++-|..
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r 87 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQR 87 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 344454444455555555666677888889999985 2334556666667777888889988888776
Q ss_pred -hhhhHHHHHHHHHHHHHHhhcccchhhh
Q 025378 210 -QGDVLEKELGEIQKVLLAMQVSPITWFY 237 (253)
Q Consensus 210 -redlLEkEL~eiQ~vL~AMQeqq~KQf~ 237 (253)
+.-..||=..+.+.+|...|..|.+--+
T Consensus 88 ~~k~q~~KL~~dF~~~L~~FQ~~Qr~~ae 116 (130)
T 2dnx_A 88 QQRLQKERLMNDFSAALNNFQAVQRRVSE 116 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224666678888899999988876544
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=59.10 E-value=6.2 Score=27.06 Aligned_cols=17 Identities=47% Similarity=0.790 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025378 112 VSLVCGVWIGAIIRRRQ 128 (253)
Q Consensus 112 V~LV~aV~iGaiIRrRQ 128 (253)
+.++.|++++.|+|||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 55667888899999986
No 5
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=56.58 E-value=17 Score=26.62 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 189 PITQAAALAQKN-SEATRALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 189 PI~etaAlAqkn-SeatraLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
|+.+........ .+....|..|.+.|++++.++|..+..++.
T Consensus 61 ~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp CHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433222 345678899999999999999998877764
No 6
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=56.04 E-value=11 Score=29.36 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q 025378 190 ITQAAALAQKNSEATRALAMQGDVLEKELGEI 221 (253)
Q Consensus 190 I~etaAlAqknSeatraLA~redlLEkEL~ei 221 (253)
+.++-+++.|.-+++..|-.+++.|++||||.
T Consensus 66 LAeAka~~~Ka~~~~~el~~~I~~LrqEl~~~ 97 (98)
T 4fm3_A 66 LAESKVLTQKSKDQLGELDKSLKRLRKQLGET 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57888999999999999999999999999985
No 7
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=54.23 E-value=11 Score=27.60 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 202 EATRALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
+....|..+.+.|++++.++|+.+..++.
T Consensus 74 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 74 DPRAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999998877764
No 8
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=52.64 E-value=81 Score=26.57 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 226 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~ 226 (253)
+...++.|...+...+.-+...+.++...--...-.-..+.+-+.++.....+..+.+..+..+..-+.+.+++|.+++.
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 84 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQ 84 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444433333322222222223344445555555566666666666677777777788887777
Q ss_pred HhhcccchhhhhhhhH
Q 025378 227 AMQVSPITWFYHLSVL 242 (253)
Q Consensus 227 AMQeqq~KQf~~LS~l 242 (253)
-+.+. ++|-.+|++=
T Consensus 85 ~I~~I-a~qtnlLALN 99 (213)
T 3g67_A 85 NIMRI-ARETNILALN 99 (213)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHh
Confidence 66653 5677777653
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=51.94 E-value=87 Score=31.90 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc
Q 025378 145 VNLVGRIEKLEEDMKSSATILRVLSRQLEKLGV 177 (253)
Q Consensus 145 ~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGv 177 (253)
..+..+++++++.+...-..+..+..++++|--
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~ 892 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766666666666666666633
No 10
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=44.65 E-value=60 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=24.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 201 SEATRALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
.+....|..+.+.+|+++.+++..+..++.
T Consensus 38 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~ 67 (99)
T 1q08_A 38 QESKGIVQERLQEVEARIAELQSMQRSLQR 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999888777654
No 11
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=43.32 E-value=54 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=23.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 201 SEATRALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
.+....|..+.+.||+++.++|+.+..++.
T Consensus 94 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 94 LHRLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888899999998888877764
No 12
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.69 E-value=84 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=28.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccchhhhhhhhHHHh
Q 025378 201 SEATRALAMQGDVLEKELGEIQKVLLAMQVSPITWFYHLSVLTVS 245 (253)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vL~AMQeqq~KQf~~LS~l~~~ 245 (253)
.+....|..+.+.||+++.++|+.+..++..-...=+.+....-.
T Consensus 80 ~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~ 124 (142)
T 3gp4_A 80 EARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEE 124 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888777765444333333333333
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.50 E-value=33 Score=22.39 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=18.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhh
Q 025378 153 KLEEDMKSSATILRVLSRQLEKL 175 (253)
Q Consensus 153 kLEe~vrs~~t~irvLSRqlEKL 175 (253)
+|||++|..-+++.-|-..+++|
T Consensus 3 rlee~~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998888888877777665
No 14
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=40.47 E-value=1e+02 Score=26.15 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=45.4
Q ss_pred HHHHHhhcce-eeeehhhccchHHHHHHHHhhhhHHH------HHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 025378 169 SRQLEKLGVR-FRVTRKALKDPITQAAALAQKNSEAT------RALAMQGDVLEKELGEIQKVLLAMQVS 231 (253)
Q Consensus 169 SRqlEKLGvR-fRvtrRtLrdPI~etaAlAqknSeat------raLA~redlLEkEL~eiQ~vL~AMQeq 231 (253)
...++++|.. |...-..--+||++.+..-+++.-.. ..=..|..-+|++|.+++.-+-+|+..
T Consensus 244 ~~~l~~~g~~gf~~~~~~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (321)
T 3p7i_A 244 KAVLERLGWAPFRASSDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSAM 313 (321)
T ss_dssp HHHHHHHTEEEEEECCGGGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCcCCeeeCCHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457889987 88888888899999877666543222 233457777888999998887777643
No 15
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=37.64 E-value=52 Score=26.65 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=22.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 202 EATRALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
+....|..+.+.|++++.++|+.+..++.
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888887776664
No 16
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=37.60 E-value=31 Score=25.87 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHH---HHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 025378 166 RVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEA---TRALAMQGDVLEKELGEIQKVLLAMQVS 231 (253)
Q Consensus 166 rvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSea---traLA~redlLEkEL~eiQ~vL~AMQeq 231 (253)
..+++.||=||||=-++--+.++==.+.+.|-+.---+ ++.|-+.|-.||++|.++..-+.-|||-
T Consensus 3 ~~~~~~Leml~IrKnma~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qey 71 (72)
T 2xu6_A 3 QTLVNSLEFLNIQKNSTMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEEY 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888887777766666656666665544444 4566688899999999998888888763
No 17
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=36.31 E-value=81 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=23.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 201 SEATRALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 201 SeatraLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
.+....|..+.+.+|+++.++|+.+..++.
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 78 ADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999988888777654
No 18
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=35.36 E-value=1.4e+02 Score=24.79 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHHHHhhcce-eeeehhhccchHHHHHHHHhhhhHHH------HHHHhhhhhHHHHHHHHHHHHHHhhc
Q 025378 169 SRQLEKLGVR-FRVTRKALKDPITQAAALAQKNSEAT------RALAMQGDVLEKELGEIQKVLLAMQV 230 (253)
Q Consensus 169 SRqlEKLGvR-fRvtrRtLrdPI~etaAlAqknSeat------raLA~redlLEkEL~eiQ~vL~AMQe 230 (253)
...++++|+. |.-.--.--+||++....=+++.-.. ..=..|..-+|++|.++++.+-+|+.
T Consensus 235 ~~~l~~~g~~gf~~~~~~~y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (310)
T 3n5l_A 235 KKVLADLQWSKFQASDDDQLLPIRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQ 303 (310)
T ss_dssp HHHHHHTTEEEEEECCGGGGHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCceeCCHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557889986 88887888899999754433322111 23345667788899998888777764
No 19
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.78 E-value=90 Score=22.58 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc---eeeeehhh-ccchHHHH----HHHHhhhhHHHHHHHhhhhhHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGV---RFRVTRKA-LKDPITQA----AALAQKNSEATRALAMQGDVLEKEL 218 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGv---RfRvtrRt-LrdPI~et----aAlAqknSeatraLA~redlLEkEL 218 (253)
+...+..+|.+.+..-.++ -.|+.|.- =++..+.. +.-|..++ ..-.....+.+..|..+.+-+++++
T Consensus 25 l~~q~~~l~~~~~e~~~~~----~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 25 VVQQKQKVQLELTEAKKAL----DEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556665555554433 34445432 23433332 23344443 3344445566777888889999999
Q ss_pred HHHHHHHHHhhcc
Q 025378 219 GEIQKVLLAMQVS 231 (253)
Q Consensus 219 ~eiQ~vL~AMQeq 231 (253)
.+++.-|++|+.+
T Consensus 101 ~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 101 KELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcc
Confidence 9999999988754
No 20
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.18 E-value=2.4e+02 Score=26.22 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 025378 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVL 225 (253)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL 225 (253)
++...|..||+.+..+...-...-.-+.++=.-..-.-+--.+=+..+..-++|+-|-...|-....--|.+|.++|..+
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35566677777666665444443333333322222111111111322222333333333333332233344566666555
Q ss_pred HHhh
Q 025378 226 LAMQ 229 (253)
Q Consensus 226 ~AMQ 229 (253)
..+|
T Consensus 115 ~~~~ 118 (409)
T 1m1j_C 115 IMNS 118 (409)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5433
No 21
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=32.46 E-value=49 Score=23.37 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=21.5
Q ss_pred HHHhhhhhH--HHHHHHHHHHHHHhhcccchh
Q 025378 206 ALAMQGDVL--EKELGEIQKVLLAMQVSPITW 235 (253)
Q Consensus 206 aLA~redlL--EkEL~eiQ~vL~AMQeqq~KQ 235 (253)
.+.+||++| |+||.+-++-|.++-.++-+.
T Consensus 10 Ei~Aqe~iLr~ErELEeAr~~La~iR~~kY~~ 41 (50)
T 2qdq_A 10 IIAAQEEMLRKERELEEARKKLAQIRQQQYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677765 899999999999987766553
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.44 E-value=1.6e+02 Score=27.85 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHH----HHhhhhhHHHHHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRA----LAMQGDVLEKELGEIQ 222 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatra----LA~redlLEkEL~eiQ 222 (253)
|.+=|.|-|+++...+.-++..=-.+.|.-.-.-..=+.+.+=+.+.++.+++|..+.-. |-.|...|.+-+.+-=
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555444444444433333333333333333456677778888888888655544 4444444444433322
Q ss_pred HHHHHhhcccchhhhhhhhHHHhh
Q 025378 223 KVLLAMQVSPITWFYHLSVLTVSI 246 (253)
Q Consensus 223 ~vL~AMQeqq~KQf~~LS~l~~~~ 246 (253)
.-|-+||..-++|.--+.+|-+.|
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255666666666666666666665
No 23
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.16 E-value=75 Score=22.06 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 025378 145 VNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (253)
Q Consensus 145 ~~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (253)
..|.+|=++|.+.++..-.=|..|.-+||||+
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35778888888888888888888888888886
No 24
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=31.57 E-value=92 Score=20.20 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=12.4
Q ss_pred hhhccchHHHHHHHHhhhhH
Q 025378 183 RKALKDPITQAAALAQKNSE 202 (253)
Q Consensus 183 rRtLrdPI~etaAlAqknSe 202 (253)
-.+|+.|+......++..++
T Consensus 68 shel~~~l~~i~~~~~~l~~ 87 (115)
T 3zrx_A 68 SHDLRTPLTRIRLATEMMSE 87 (115)
T ss_dssp HHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHhhHHHHHHHHHHHHh
Confidence 45567777777666665443
No 25
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.69 E-value=97 Score=25.18 Aligned_cols=91 Identities=18% Similarity=0.129 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeee--ehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q 025378 143 ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRV--TRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGE 220 (253)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRv--trRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~e 220 (253)
...+|+.-+..||..-.+=+++=.. +.+|=.-|-= .-..++| =.+...++++..||...|+.--.+||.|+.+
T Consensus 23 ~~~elik~L~~le~sassDa~vrq~----Ia~LP~eVsd~s~l~klkD-k~~~e~l~~~veeA~~~L~eYn~rL~~E~~d 97 (152)
T 4fla_A 23 LTEELIKALQDLENAASGDATVRQK----IASLPQEVQDVSLLEKITD-KEAAERLSKTVDEACLLLAEYNGRLAAELED 97 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH----HHTSCGGGTCGGGGGGCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccccchHHHHHH----HHcCCccccCHHHHHHccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777778887776555444333 3333222110 1122333 2567889999999999999999999999999
Q ss_pred HHHHHHHhhcccchhhhh
Q 025378 221 IQKVLLAMQVSPITWFYH 238 (253)
Q Consensus 221 iQ~vL~AMQeqq~KQf~~ 238 (253)
-..++..+.+-.+-|=+.
T Consensus 98 R~~L~~~L~~~~~~~~~~ 115 (152)
T 4fla_A 98 RRQLARMLVEYTQNQKDV 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888776665544333333
No 26
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.62 E-value=77 Score=28.28 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhh---hhHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccc
Q 025378 164 ILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQK---NSEATRALAMQGDVLEKELGEIQKVLLAMQVSPI 233 (253)
Q Consensus 164 ~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqk---nSeatraLA~redlLEkEL~eiQ~vL~AMQeqq~ 233 (253)
....+.+.||=||||=.++..++++==.+.+.|-.. .=+=++.|-+.|-.||.||.+++.-+.-+||..-
T Consensus 157 ~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 157 FSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 445678899999999888888777755555555443 3444566667888999999999999999998654
No 27
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=30.27 E-value=31 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=16.4
Q ss_pred ccchHHHHHHHHHHHhHhHH
Q 025378 143 ESVNLVGRIEKLEEDMKSSA 162 (253)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~ 162 (253)
...++.+|+.|+|+.|..+-
T Consensus 4 ~~~Sm~~Rl~kVE~qv~~md 23 (33)
T 2ovc_A 4 DEISMMGRVVKVEKQVQSIE 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 46679999999999987654
No 28
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.99 E-value=1.5e+02 Score=23.37 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q 025378 146 NLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELG 219 (253)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~ 219 (253)
-|+-.++.+||.+-..-.=.+--+|.+|++- .....+-.+..+.-..|.+|.+++|+.++
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK~re~e~~K--------------r~~~~L~~~~~~lk~~L~qRD~LI~E~~~ 93 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEKNKEFEREK--------------HAHSILQFQFAEVKEALKQREEMLEPKLA 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTTTSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899888777777777777777652 22334445555666688999999998765
No 29
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.87 E-value=1.1e+02 Score=21.81 Aligned_cols=78 Identities=10% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc---eeeeehhh-ccchHHHHHHHH----hhhhHHHHHHHhhhhhHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGV---RFRVTRKA-LKDPITQAAALA----QKNSEATRALAMQGDVLEKEL 218 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGv---RfRvtrRt-LrdPI~etaAlA----qknSeatraLA~redlLEkEL 218 (253)
+...+..+|.+....-.++. .|+.|-= =++..+.. +.-|..++...- ....+.+..|-.+.+-+++++
T Consensus 20 l~~q~~~l~~~~~e~~~~~~----EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 20 ISVQKQTVEMQINETQKALE----ELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655555544433 3444421 24544443 234444443333 333344555666666666666
Q ss_pred HHHHHHHHHh
Q 025378 219 GEIQKVLLAM 228 (253)
Q Consensus 219 ~eiQ~vL~AM 228 (253)
.+.+.-|++|
T Consensus 96 ~~lk~~l~~~ 105 (107)
T 1fxk_A 96 QEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 30
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=27.22 E-value=59 Score=20.97 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=17.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHH
Q 025378 199 KNSEATRALAMQGDVLEKELG 219 (253)
Q Consensus 199 knSeatraLA~redlLEkEL~ 219 (253)
-..+++|||-.|-|+||.-|+
T Consensus 8 ay~~atRALHeRFDRLEr~ld 28 (30)
T 3efd_K 8 AYTRTTRALHERFDRLERMLD 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999998775
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.09 E-value=1.2e+02 Score=25.42 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEK 174 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEK 174 (253)
+..|+..+|+.+...+.-+..+...++.
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l~~ 129 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQED 129 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444433
No 32
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=27.06 E-value=77 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 025378 202 EATRALAMQGDVLEKELGEIQKVLLAMQ 229 (253)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vL~AMQ 229 (253)
+....|..|.+.|++++.+++..+..++
T Consensus 76 ~~~~~L~~~~~~L~~~~~~L~~~~~~l~ 103 (249)
T 3qao_A 76 DKNVALDMQRHLLIEKKQRIETMLATLD 103 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777776666655544
No 33
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=26.89 E-value=1.1e+02 Score=24.09 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHhhcc
Q 025378 202 EATRALAMQGDVLEKELGEIQKVLLAMQVS 231 (253)
Q Consensus 202 eatraLA~redlLEkEL~eiQ~vL~AMQeq 231 (253)
+....|..+.+.||+++.++|..+..++..
T Consensus 90 ~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~ 119 (154)
T 2zhg_A 90 EWKQLSSQWREELDRRIHTLVALRDELDGC 119 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777888999999998888777643
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.33 E-value=97 Score=21.06 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 025378 190 ITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLA 227 (253)
Q Consensus 190 I~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~A 227 (253)
+.+...-+....+.-..|..+.+.|+.|+..+...|+|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444444445555666666666666655543
No 35
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.62 E-value=1.3e+02 Score=23.41 Aligned_cols=46 Identities=30% Similarity=0.300 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH-------Hhhcccchhhh-hhhhHHHhhhh
Q 025378 203 ATRALAMQGDVLEKELGEIQKVLL-------AMQVSPITWFY-HLSVLTVSIWN 248 (253)
Q Consensus 203 atraLA~redlLEkEL~eiQ~vL~-------AMQeqq~KQf~-~LS~l~~~~~~ 248 (253)
....|..+.+.|++++.+++..+. .+++...-.++ +.+++---+|.
T Consensus 81 ~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~~ 134 (146)
T 3hh0_A 81 FLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWE 134 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHc
Confidence 344455555556666655555544 44444444454 34555555664
No 36
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.59 E-value=12 Score=24.75 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 025378 110 GVVSLVCGVWIGAIIRRRQ 128 (253)
Q Consensus 110 g~V~LV~aV~iGaiIRrRQ 128 (253)
..+.++.|+.+|.+||||.
T Consensus 17 lll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 17 VLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHHhheEEeecC
Confidence 4445667888899999973
No 37
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=24.63 E-value=87 Score=21.60 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 025378 146 NLVGRIEKLEEDMKSSATILRVLSRQL 172 (253)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvLSRql 172 (253)
-|+.|+-.||..+.+++.-|..+.-.|
T Consensus 11 ~L~rRVlqlE~~l~gI~S~idav~~Kl 37 (45)
T 4gif_A 11 MLTRRVLQLETVLEGVVSQIDAVGSKL 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999988877765444
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.79 E-value=1.7e+02 Score=21.77 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 025378 190 ITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQ 229 (253)
Q Consensus 190 I~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~AMQ 229 (253)
|.+.+.+-++--|-.+..-.+.+.||++|.|-...+.-+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444444445555555566666665555544443
No 39
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.69 E-value=1.1e+02 Score=22.42 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 025378 149 GRIEKLEEDMKSSATILRVLSRQLEKLG 176 (253)
Q Consensus 149 ~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (253)
.||..||..++.--+.|+-|.+++.|.=
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999974
No 40
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=22.54 E-value=85 Score=28.84 Aligned_cols=82 Identities=18% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 025378 149 GRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAM 228 (253)
Q Consensus 149 ~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~AM 228 (253)
++|+.||+.+...+.--..+-++.|.|..+ |++..+.|..=-.|.-+|..=.|-.-.++...|.++..|
T Consensus 3 ~~~~~l~~~~~~~~e~r~~lr~~~eql~~~-----------i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~m 71 (302)
T 3ibp_A 3 HMIASLSDSVSNAREERMALRQEQEQLQSR-----------IQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYL 71 (302)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHH
Q ss_pred hcccchhhhhhhhH
Q 025378 229 QVSPITWFYHLSVL 242 (253)
Q Consensus 229 Qeqq~KQf~~LS~l 242 (253)
|.+=.|. ..++..
T Consensus 72 q~~Le~E-re~~~~ 84 (302)
T 3ibp_A 72 QQLLERE-REAIVE 84 (302)
T ss_dssp HHHHHHH-HHHHHH
T ss_pred HHHHHHH-HHHHHH
No 41
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.99 E-value=2e+02 Score=21.52 Aligned_cols=43 Identities=7% Similarity=0.085 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc
Q 025378 190 ITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQVSP 232 (253)
Q Consensus 190 I~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~AMQeqq 232 (253)
+.+..+.-++--+-...|.++.+.|+..+.++++++.++..-+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677788888888899999999999999999999999887654
No 42
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=21.38 E-value=3.7e+02 Score=22.64 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHH
Q 025378 143 ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQ 222 (253)
Q Consensus 143 ~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ 222 (253)
...++.+||.+|-..++..+.-++ +...++.-.-++--++..|..=+..|...|.+.=+++-+..--.+-|++++.++.
T Consensus 13 ~~~~~~~~iG~ltR~Lh~sl~~l~-~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~ 91 (214)
T 1kmi_Z 13 SAGDIIARIGSLTRMLRDSLRELG-LDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALT 91 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcC-CChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355799999999988888877776 4555665555677788899999999999999988888888777777888777765
Q ss_pred HH
Q 025378 223 KV 224 (253)
Q Consensus 223 ~v 224 (253)
..
T Consensus 92 ~~ 93 (214)
T 1kmi_Z 92 QR 93 (214)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.21 E-value=73 Score=20.98 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=14.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHH
Q 025378 204 TRALAMQGDVLEKELGEIQKV 224 (253)
Q Consensus 204 traLA~redlLEkEL~eiQ~v 224 (253)
+..|..|.+.||++|..++..
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556777777788877777653
No 44
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=20.95 E-value=1.4e+02 Score=23.28 Aligned_cols=6 Identities=17% Similarity=0.700 Sum_probs=3.1
Q ss_pred HHHHHH
Q 025378 127 RQWRRV 132 (253)
Q Consensus 127 RQW~Ri 132 (253)
|-|.+.
T Consensus 22 R~ye~~ 27 (146)
T 3hh0_A 22 RYYDKI 27 (146)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 456553
No 45
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=20.89 E-value=3.4e+02 Score=23.11 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHhhcce-eeeehhhcc
Q 025378 149 GRIEKLEEDMKSSATILRVLSRQLEKLGVR-FRVTRKALK 187 (253)
Q Consensus 149 ~RiekLEe~vrs~~t~irvLSRqlEKLGvR-fRvtrRtLr 187 (253)
.+|++|=+.+++.+.-||..-|++-++-|+ .++.|+++.
T Consensus 155 k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~fi 194 (339)
T 1sig_A 155 KQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFI 194 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 578888999999999999999999999977 677776544
No 46
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=20.59 E-value=1.1e+02 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhHhHHHHHHHH
Q 025378 146 NLVGRIEKLEEDMKSSATILRVL 168 (253)
Q Consensus 146 ~l~~RiekLEe~vrs~~t~irvL 168 (253)
.|+.||-.||..+.+++.-|...
T Consensus 10 ~L~rRVlqLE~sl~gI~SqIDaV 32 (64)
T 3hrn_A 10 VLVRRVDRMEHSIGSIVSKIDAV 32 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999988877764
No 47
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.27 E-value=93 Score=24.58 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccccC----cccchHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc
Q 025378 127 RQWRRVCGEKARAEG----RESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLGV 177 (253)
Q Consensus 127 RQW~Ri~~~~gr~~g----r~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLGv 177 (253)
++|.++...++.+.. .....|..-++.+|+++.....+|++..+.-+|-|+
T Consensus 48 ~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l 102 (130)
T 4dnd_A 48 QRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKL 102 (130)
T ss_dssp HHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCC
No 48
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.24 E-value=1.1e+02 Score=22.95 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 025378 194 AALAQKNSEATRALAMQGDVLEKELGEIQKVLLA 227 (253)
Q Consensus 194 aAlAqknSeatraLA~redlLEkEL~eiQ~vL~A 227 (253)
.++.++ -++++.|..+.+-|+++|..+++++..
T Consensus 9 ~~l~~~-~~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 9 PELKSD-LEKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333 346778888888888888888886643
No 49
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=20.20 E-value=69 Score=22.89 Aligned_cols=11 Identities=9% Similarity=0.006 Sum_probs=2.8
Q ss_pred HHHHHHHHHHH
Q 025378 115 VCGVWIGAIIR 125 (253)
Q Consensus 115 V~aV~iGaiIR 125 (253)
+++++++.++.
T Consensus 70 ~~~~~~~~~~~ 80 (163)
T 2f95_B 70 INLGLVAATLG 80 (163)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.11 E-value=4.5e+02 Score=23.10 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHH
Q 025378 198 QKNSEATRALAMQGDVLEKELGEIQKVL 225 (253)
Q Consensus 198 qknSeatraLA~redlLEkEL~eiQ~vL 225 (253)
++.++-+..+..+.+.++||+.|..+.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3444444455555555666665554433
No 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.00 E-value=2.8e+02 Score=28.46 Aligned_cols=6 Identities=50% Similarity=0.872 Sum_probs=3.2
Q ss_pred CceeEe
Q 025378 57 TPFKFI 62 (253)
Q Consensus 57 ~~f~f~ 62 (253)
.|..|+
T Consensus 669 ~p~~fd 674 (1080)
T 2dfs_A 669 FPFTFD 674 (1080)
T ss_dssp CTTCCC
T ss_pred CchhcC
Confidence 455554
Done!