Query 025378
Match_columns 253
No_of_seqs 19 out of 21
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 09:07:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ykhb1 a.252.1.1 (B:2-130) RN 36.6 71 0.0052 23.4 7.6 69 153-226 53-126 (129)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 29.4 61 0.0044 22.2 5.9 42 191-232 4-45 (107)
3 d1rzua_ c.87.1.8 (A:) Glycogen 28.2 18 0.0013 29.1 3.0 23 160-182 18-40 (477)
4 d1r8da_ a.6.1.3 (A:) Multidrug 24.1 56 0.0041 21.9 4.7 41 189-229 61-102 (109)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 20.4 1.2E+02 0.0089 20.5 9.0 81 147-228 20-105 (107)
6 d1lvfa_ a.47.2.1 (A:) Syntaxin 20.3 43 0.0031 23.4 3.5 51 126-176 22-76 (106)
7 d1ykhb1 a.252.1.1 (B:2-130) RN 20.2 1.5E+02 0.011 21.5 7.5 58 118-176 61-118 (129)
8 g1avo.1 a.24.8.1 (A:,B:) Prote 17.2 38 0.0027 27.1 2.8 25 226-250 157-181 (200)
9 d2bcgg1 c.3.1.3 (G:5-301) Guan 15.9 33 0.0024 22.4 1.8 23 160-182 234-256 (297)
10 d1vc1a_ c.13.2.1 (A:) Anti-sig 15.7 1.1E+02 0.008 19.7 4.6 35 162-198 62-96 (110)
No 1
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.56 E-value=71 Score=23.37 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHhh-----cceeeeehhhccchHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 025378 153 KLEEDMKSSATILRVLSRQLEKL-----GVRFRVTRKALKDPITQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLL 226 (253)
Q Consensus 153 kLEe~vrs~~t~irvLSRqlEKL-----GvRfRvtrRtLrdPI~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~ 226 (253)
..|...+.+++-+-.-+||.+.| |+.. .=.+=....+.|-++|-++-.-+.....--|+.|+.+|+++.
T Consensus 53 ~f~~~~~elA~dii~kakqId~LI~sLP~~~~-----see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~ 126 (129)
T d1ykhb1 53 EFSNTIDELSTDIILKTRQINKLIDSLPGVDV-----SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888889999887 3211 001112333455566666666555555556666666666553
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.42 E-value=61 Score=22.20 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=32.7
Q ss_pred HHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhccc
Q 025378 191 TQAAALAQKNSEATRALAMQGDVLEKELGEIQKVLLAMQVSP 232 (253)
Q Consensus 191 ~etaAlAqknSeatraLA~redlLEkEL~eiQ~vL~AMQeqq 232 (253)
++..+-.++.-+-...+..+..-||.++.|.+.|+..|....
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~ 45 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA 45 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555566677888899999999999999999998654
No 3
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=28.24 E-value=18 Score=29.14 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHhhcceeeee
Q 025378 160 SSATILRVLSRQLEKLGVRFRVT 182 (253)
Q Consensus 160 s~~t~irvLSRqlEKLGvRfRvt 182 (253)
|..++++.|||+|.++|..++|.
T Consensus 18 Gl~~vv~~La~~L~~~Gh~V~Vi 40 (477)
T d1rzua_ 18 GLADVVGALPIALEAHGVRTRTL 40 (477)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCeEEEE
Confidence 55667788999999999999985
No 4
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=24.15 E-value=56 Score=21.92 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=21.1
Q ss_pred hHHHHHHHHh-hhhHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 025378 189 PITQAAALAQ-KNSEATRALAMQGDVLEKELGEIQKVLLAMQ 229 (253)
Q Consensus 189 PI~etaAlAq-knSeatraLA~redlLEkEL~eiQ~vL~AMQ 229 (253)
||.+...+-. .+.+-..++..+.+.|++++.+++..+..+|
T Consensus 61 sl~eI~~~l~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 102 (109)
T d1r8da_ 61 RLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp CHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 2333445566666666666666665554443
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.36 E-value=1.2e+02 Score=20.52 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHhhcceeeeehhhc-cchHHHH----HHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q 025378 147 LVGRIEKLEEDMKSSATILRVLSRQLEKLGVRFRVTRKAL-KDPITQA----AALAQKNSEATRALAMQGDVLEKELGEI 221 (253)
Q Consensus 147 l~~RiekLEe~vrs~~t~irvLSRqlEKLGvRfRvtrRtL-rdPI~et----aAlAqknSeatraLA~redlLEkEL~ei 221 (253)
+...+..||.+....-.++..|... +.=..=||..+..| +.|..++ ..-.......+..|-.+++.+|+++.+.
T Consensus 20 ~~~q~~~le~q~~E~~~vl~eL~~l-~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 20 ISVQKQTVEMQINETQKALEELSRA-ADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-CcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555422 22223345444332 2223322 2223333445566666777777777777
Q ss_pred HHHHHHh
Q 025378 222 QKVLLAM 228 (253)
Q Consensus 222 Q~vL~AM 228 (253)
++-+.-|
T Consensus 99 ~~~l~~~ 105 (107)
T d1fxka_ 99 QVNIQEA 105 (107)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 6665544
No 6
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.34 E-value=43 Score=23.38 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcccccCc----ccchHHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 025378 126 RRQWRRVCGEKARAEGR----ESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (253)
Q Consensus 126 rRQW~Ri~~~~gr~~gr----~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (253)
-++|.++...+...++. ....|..-++.+|.++...-.+|++..+.-+|-|
T Consensus 22 ~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~ 76 (106)
T d1lvfa_ 22 FQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFN 76 (106)
T ss_dssp HHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGT
T ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcC
Confidence 36798888765422211 2345666677777777777777776554444443
No 7
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.24 E-value=1.5e+02 Score=21.47 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCcccchHHHHHHHHHHHhHhHHHHHHHHHHHHHhhc
Q 025378 118 VWIGAIIRRRQWRRVCGEKARAEGRESVNLVGRIEKLEEDMKSSATILRVLSRQLEKLG 176 (253)
Q Consensus 118 V~iGaiIRrRQW~Ri~~~~gr~~gr~~~~l~~RiekLEe~vrs~~t~irvLSRqlEKLG 176 (253)
++...+...+|+.-+-..=-+. +.++..=..||.+||+.++....-....-+..|+|.
T Consensus 61 lA~dii~kakqId~LI~sLP~~-~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll 118 (129)
T d1ykhb1 61 LSTDIILKTRQINKLIDSLPGV-DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLM 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778888655542111 235677889999999999988655544445555543
No 8
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.19 E-value=38 Score=27.12 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=13.0
Q ss_pred HHhhcccchhhhhhhhHHHhhhhhc
Q 025378 226 LAMQVSPITWFYHLSVLTVSIWNQY 250 (253)
Q Consensus 226 ~AMQeqq~KQf~~LS~l~~~~~~~~ 250 (253)
.|.++--.|||.-|...-..|-|.|
T Consensus 157 ~~v~e~Dek~y~~lr~~v~eiRn~Y 181 (200)
T g1avo.1 157 QLVHELDEAEYRDIRLMVMEIRNAY 181 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555
No 9
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.90 E-value=33 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHhhcceeeee
Q 025378 160 SSATILRVLSRQLEKLGVRFRVT 182 (253)
Q Consensus 160 s~~t~irvLSRqlEKLGvRfRvt 182 (253)
+.-+++..|.+.++++|+.|+.-
T Consensus 234 G~~~l~~~l~~~~~~~G~~i~~~ 256 (297)
T d2bcgg1 234 GLGELPQGFARLSAIYGGTYMLD 256 (297)
T ss_dssp CTTHHHHHHHHHHHHTTCEEECS
T ss_pred cHHHHHHHHHHHHHhcCCEEEeC
Confidence 34567889999999999998753
No 10
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=15.72 E-value=1.1e+02 Score=19.65 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcceeeeehhhccchHHHHHHHHh
Q 025378 162 ATILRVLSRQLEKLGVRFRVTRKALKDPITQAAALAQ 198 (253)
Q Consensus 162 ~t~irvLSRqlEKLGvRfRvtrRtLrdPI~etaAlAq 198 (253)
+.++..+.+.+.+.|+++.+.+ +++++.++...++
T Consensus 62 ~~~l~~~~~~~~~~~~~l~l~~--~~~~v~~~l~~~g 96 (110)
T d1vc1a_ 62 LGTLVVILKDAKINGKEFILSS--LKESISRILKLTH 96 (110)
T ss_dssp HHHHHHHHHHHHHTTCEEEEES--CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEEEe--CCHHHHHHHHHcC
Confidence 6667777889999999999987 6888888877654
Done!