Query 025379
Match_columns 253
No_of_seqs 239 out of 1651
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:08:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 87.9 0.24 8.1E-06 31.3 1.8 31 68-98 15-45 (56)
2 3j21_g 50S ribosomal protein L 85.7 0.21 7.1E-06 31.2 0.6 30 69-98 11-40 (51)
3 2dkt_A Ring finger and CHY zin 74.8 0.72 2.5E-05 35.1 0.4 45 67-111 78-126 (143)
4 1x4u_A Zinc finger, FYVE domai 68.6 1.9 6.5E-05 29.5 1.4 24 72-95 14-39 (84)
5 1wfk_A Zinc finger, FYVE domai 68.0 1.9 6.4E-05 29.9 1.3 25 71-95 8-34 (88)
6 1joc_A EEA1, early endosomal a 66.3 2.1 7.2E-05 31.7 1.3 24 72-95 69-94 (125)
7 1z2q_A LM5-1; membrane protein 65.9 2.3 7.9E-05 29.1 1.4 25 71-95 20-46 (84)
8 3arc_T Photosystem II reaction 65.2 12 0.0004 20.7 3.8 28 3-30 3-31 (32)
9 2yw8_A RUN and FYVE domain-con 63.8 2.5 8.5E-05 28.8 1.2 24 72-95 19-44 (82)
10 1dvp_A HRS, hepatocyte growth 60.8 2.4 8.3E-05 34.4 0.8 24 73-96 162-187 (220)
11 2cr8_A MDM4 protein; ZF-ranbp 60.3 3.1 0.00011 25.6 1.0 21 73-93 12-32 (53)
12 1vfy_A Phosphatidylinositol-3- 60.3 1.8 6.3E-05 28.7 0.0 23 73-95 12-36 (73)
13 2c6a_A Ubiquitin-protein ligas 57.1 3.9 0.00014 24.6 1.1 22 72-93 13-34 (46)
14 3zyq_A Hepatocyte growth facto 56.9 6.6 0.00023 32.0 2.8 24 73-96 165-190 (226)
15 3t7l_A Zinc finger FYVE domain 52.5 5.3 0.00018 27.6 1.4 24 72-95 20-45 (90)
16 3j20_Y 30S ribosomal protein S 47.7 5.1 0.00017 24.6 0.5 24 70-93 17-44 (50)
17 3u5e_m 60S ribosomal protein L 46.0 6.9 0.00024 28.7 1.2 26 70-95 91-118 (128)
18 1y02_A CARP2, FYVE-ring finger 42.4 5.1 0.00018 29.4 -0.1 23 73-95 20-44 (120)
19 2apo_B Ribosome biogenesis pro 37.7 12 0.00039 24.0 1.1 22 71-94 5-26 (60)
20 2dkt_A Ring finger and CHY zin 36.9 6.1 0.00021 30.0 -0.4 31 74-104 103-136 (143)
21 2pg3_A Queuosine biosynthesis 34.6 12 0.00041 30.1 1.0 18 82-99 191-208 (232)
22 2zjr_Z 50S ribosomal protein L 34.2 16 0.00055 23.2 1.4 23 69-93 27-50 (60)
23 2knc_A Integrin alpha-IIB; tra 30.1 63 0.0021 20.0 3.5 22 7-33 23-44 (54)
24 3bl5_A Queuosine biosynthesis 28.8 18 0.00062 28.4 1.1 18 82-99 188-205 (219)
25 1wil_A KIAA1045 protein; ring 26.9 40 0.0014 23.0 2.4 25 71-95 14-38 (89)
26 2aus_D NOP10, ribosome biogene 26.4 23 0.00079 22.6 1.0 22 71-94 4-25 (60)
27 2k1p_A Zinc finger RAN-binding 26.4 48 0.0017 18.1 2.3 20 74-93 8-27 (33)
28 2vrw_B P95VAV, VAV1, proto-onc 26.2 25 0.00087 30.8 1.7 31 70-100 355-393 (406)
29 3qt1_I DNA-directed RNA polyme 25.9 30 0.001 25.7 1.8 26 69-94 21-54 (133)
30 1tac_A TAT protein; transcript 24.4 24 0.00082 24.0 0.9 14 72-92 24-37 (86)
31 3mpx_A FYVE, rhogef and PH dom 24.4 16 0.00054 32.3 0.0 25 72-96 375-401 (434)
32 3gox_A Restriction endonucleas 23.6 17 0.00059 28.8 0.1 18 67-84 70-87 (200)
33 3v2d_5 50S ribosomal protein L 23.2 28 0.00095 22.1 1.0 22 70-93 28-50 (60)
34 3gj3_B Nuclear pore complex pr 22.5 34 0.0012 18.9 1.1 19 75-93 10-28 (33)
35 1twf_L ABC10-alpha, DNA-direct 22.2 34 0.0011 22.4 1.3 26 72-97 28-56 (70)
36 3mi9_C Protein TAT; P-TEFB, HI 20.9 22 0.00074 24.3 0.1 14 72-92 24-37 (86)
37 1wfl_A Zinc finger protein 216 20.8 90 0.0031 20.6 3.1 38 72-110 25-67 (74)
38 2elu_A Zinc finger protein 406 20.0 17 0.00057 20.1 -0.5 8 87-94 10-17 (37)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=87.92 E-value=0.24 Score=31.35 Aligned_cols=31 Identities=26% Similarity=0.652 Sum_probs=25.3
Q ss_pred ccccccccccccccCCCCCcCCcccchhhcc
Q 025379 68 KHQGVRFCQKCNQFKPPRCHHCSVCRRCILK 98 (253)
Q Consensus 68 ~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 98 (253)
.......|.+|...-|+|+.-|+.||.--+|
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HHhchhhhccccCcCCcccccccCCCCCCCC
Confidence 3456789999999999999999998854443
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.72 E-value=0.21 Score=31.17 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=24.8
Q ss_pred cccccccccccccCCCCCcCCcccchhhcc
Q 025379 69 HQGVRFCQKCNQFKPPRCHHCSVCRRCILK 98 (253)
Q Consensus 69 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 98 (253)
......|+.|...-|+++..|+.||.--+|
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 345688999999999999999999865443
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=74.85 E-value=0.72 Score=35.11 Aligned_cols=45 Identities=24% Similarity=0.593 Sum_probs=31.9
Q ss_pred cccccccccccccccCCCCC-cCCcccchhhcc---ccccCcccccccc
Q 025379 67 PKHQGVRFCQKCNQFKPPRC-HHCSVCRRCILK---MDHHCVWVVNCVG 111 (253)
Q Consensus 67 ~~~~~~~~C~~C~~~kP~Rs-~HC~~C~~CV~~---~DHHC~w~~nCIG 111 (253)
+.....-||.+|+.+.+++. +||..||-|..+ -=-||.--|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 44556779999999976654 888888888875 2245666666653
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.63 E-value=1.9 Score=29.49 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=16.3
Q ss_pred cccccccccc--CCCCCcCCcccchh
Q 025379 72 VRFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
...|..|... --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 3467777643 34588999999863
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=68.05 E-value=1.9 Score=29.93 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=17.7
Q ss_pred ccccccccccc--CCCCCcCCcccchh
Q 025379 71 GVRFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 71 ~~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
....|..|... --.|-|||+.||+-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCE
Confidence 44568888753 24588999999873
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.30 E-value=2.1 Score=31.72 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=17.2
Q ss_pred cccccccccc--CCCCCcCCcccchh
Q 025379 72 VRFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
...|..|... --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4568888753 24588999999863
No 7
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.94 E-value=2.3 Score=29.07 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=17.4
Q ss_pred ccccccccccc--CCCCCcCCcccchh
Q 025379 71 GVRFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 71 ~~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
....|..|+.. --.|-|||+.||+-
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcE
Confidence 34568888743 23588999999864
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=65.22 E-value=12 Score=20.69 Aligned_cols=28 Identities=11% Similarity=0.473 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHH-HHHHHhhcCCCCCCC
Q 025379 3 VLNFVMQLVMLVW-SYFSVVITDPGGVPP 30 (253)
Q Consensus 3 li~~~~l~~~~~~-sy~~~~~tdPG~vp~ 30 (253)
.++|.+++++.+- .++...+.||-.+++
T Consensus 3 a~vYt~ll~~tlgiiFFAI~FRePPri~~ 31 (32)
T 3arc_T 3 TITYVFIFACIIALFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCCCC-
T ss_pred hHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Confidence 3677777777754 577788999988774
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=63.84 E-value=2.5 Score=28.77 Aligned_cols=24 Identities=29% Similarity=0.760 Sum_probs=16.7
Q ss_pred cccccccccc--CCCCCcCCcccchh
Q 025379 72 VRFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
...|..|+.. --.|-|||+.||+-
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 44 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHI 44 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CCcccCcCCcccCccccccCCCCCCE
Confidence 4567778643 23588999999874
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=60.81 E-value=2.4 Score=34.41 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=17.8
Q ss_pred ccccccccc--CCCCCcCCcccchhh
Q 025379 73 RFCQKCNQF--KPPRCHHCSVCRRCI 96 (253)
Q Consensus 73 ~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (253)
+.|..|+.. --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 679999743 235889999998743
No 11
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=60.27 E-value=3.1 Score=25.60 Aligned_cols=21 Identities=29% Similarity=0.795 Sum_probs=15.4
Q ss_pred cccccccccCCCCCcCCcccc
Q 025379 73 RFCQKCNQFKPPRCHHCSVCR 93 (253)
Q Consensus 73 ~~C~~C~~~kP~Rs~HC~~C~ 93 (253)
-.|..|+..-||-..||..|-
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTC
T ss_pred eecccccccCCCccchhHHHH
Confidence 348888888788777777663
No 12
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=60.26 E-value=1.8 Score=28.73 Aligned_cols=23 Identities=30% Similarity=0.649 Sum_probs=16.3
Q ss_pred ccccccccc--CCCCCcCCcccchh
Q 025379 73 RFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 73 ~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
..|..|+.. --.|-|||+.||+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCCCCccCCccccccCCCCCEE
Confidence 357778643 23588999999874
No 13
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=57.15 E-value=3.9 Score=24.60 Aligned_cols=22 Identities=36% Similarity=0.924 Sum_probs=17.5
Q ss_pred ccccccccccCCCCCcCCcccc
Q 025379 72 VRFCQKCNQFKPPRCHHCSVCR 93 (253)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~ 93 (253)
.-.|..|+..-||-..||..|-
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTC
T ss_pred eEecccccccCCCccchhhHHH
Confidence 3459999988888888888774
No 14
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.92 E-value=6.6 Score=32.01 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=16.9
Q ss_pred ccccccccc--CCCCCcCCcccchhh
Q 025379 73 RFCQKCNQF--KPPRCHHCSVCRRCI 96 (253)
Q Consensus 73 ~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (253)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 478888732 234789999998743
No 15
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.48 E-value=5.3 Score=27.62 Aligned_cols=24 Identities=29% Similarity=0.696 Sum_probs=16.4
Q ss_pred cccccccccc--CCCCCcCCcccchh
Q 025379 72 VRFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
...|..|... --.|-|||+.||+-
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCE
Confidence 4568888642 23478999999764
No 16
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.65 E-value=5.1 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=14.5
Q ss_pred ccccccccccccC---C-CCCcCCcccc
Q 025379 70 QGVRFCQKCNQFK---P-PRCHHCSVCR 93 (253)
Q Consensus 70 ~~~~~C~~C~~~k---P-~Rs~HC~~C~ 93 (253)
...++|+.|..-. + ...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 3578999997521 1 1235677665
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=46.01 E-value=6.9 Score=28.70 Aligned_cols=26 Identities=31% Similarity=0.746 Sum_probs=22.1
Q ss_pred ccccccccccccCCCCCcCCcc--cchh
Q 025379 70 QGVRFCQKCNQFKPPRCHHCSV--CRRC 95 (253)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs~HC~~--C~~C 95 (253)
-....|.+|...-|+|+..|+. ||..
T Consensus 91 ~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 91 CDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp TSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred cceEeeccccccCCchhhccchhhCCCc
Confidence 3568999999999999999994 8753
No 18
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.38 E-value=5.1 Score=29.44 Aligned_cols=23 Identities=22% Similarity=0.676 Sum_probs=16.2
Q ss_pred ccccccccc--CCCCCcCCcccchh
Q 025379 73 RFCQKCNQF--KPPRCHHCSVCRRC 95 (253)
Q Consensus 73 ~~C~~C~~~--kP~Rs~HC~~C~~C 95 (253)
..|..|+.. -..|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 457777642 24588999999873
No 19
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=37.74 E-value=12 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=16.8
Q ss_pred cccccccccccCCCCCcCCcccch
Q 025379 71 GVRFCQKCNQFKPPRCHHCSVCRR 94 (253)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~ 94 (253)
..+.|+.|+.+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4678999988777 667888775
No 20
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=36.86 E-value=6.1 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=22.2
Q ss_pred ccccccccCCCCCcCCcccchhhc--ccc-ccCc
Q 025379 74 FCQKCNQFKPPRCHHCSVCRRCIL--KMD-HHCV 104 (253)
Q Consensus 74 ~C~~C~~~kP~Rs~HC~~C~~CV~--~~D-HHC~ 104 (253)
.|..|++-+..--.||..||.|+. ..| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 456666666677899999999954 344 7774
No 21
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=34.56 E-value=12 Score=30.07 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=14.3
Q ss_pred CCCCCcCCcccchhhccc
Q 025379 82 KPPRCHHCSVCRRCILKM 99 (253)
Q Consensus 82 kP~Rs~HC~~C~~CV~~~ 99 (253)
++.|..||..|..|+.|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455568999999999873
No 22
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.22 E-value=16 Score=23.24 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=15.7
Q ss_pred cccccccccccccCCCCCcC-Ccccc
Q 025379 69 HQGVRFCQKCNQFKPPRCHH-CSVCR 93 (253)
Q Consensus 69 ~~~~~~C~~C~~~kP~Rs~H-C~~C~ 93 (253)
......|++|+..+ +.|| |..||
T Consensus 27 ~p~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 27 APNLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCCCEECTTTCCEE--CTTBCCTTTC
T ss_pred CCCceECCCCCCEe--CCceEcCCCC
Confidence 34567799998775 4555 77776
No 23
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.14 E-value=63 Score=20.03 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 025379 7 VMQLVMLVWSYFSVVITDPGGVPPNWI 33 (253)
Q Consensus 7 ~~l~~~~~~sy~~~~~tdPG~vp~~~~ 33 (253)
.++++++.+..+|+ |...|+..
T Consensus 23 LllL~li~~~LwK~-----GFFkR~~~ 44 (54)
T 2knc_A 23 LLLLTILVLAMWKV-----GFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHH-----HHTTTTCC
T ss_pred HHHHHHHHHHHHHc-----CcccCCCC
Confidence 34445555566677 45555543
No 24
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=28.80 E-value=18 Score=28.41 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=14.1
Q ss_pred CCCCCcCCcccchhhccc
Q 025379 82 KPPRCHHCSVCRRCILKM 99 (253)
Q Consensus 82 kP~Rs~HC~~C~~CV~~~ 99 (253)
.+.|..||..|..|+.|.
T Consensus 188 ~~~~~~~CG~C~~C~~r~ 205 (219)
T 3bl5_A 188 NGIIADGCGECPACHLRS 205 (219)
T ss_dssp TSCCSSCCSCSHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHH
Confidence 445569999999998863
No 25
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=26.91 E-value=40 Score=23.03 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=20.7
Q ss_pred cccccccccccCCCCCcCCcccchh
Q 025379 71 GVRFCQKCNQFKPPRCHHCSVCRRC 95 (253)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~C 95 (253)
....|..|+.+--.--.-|++|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 3467999999987777889999885
No 26
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=26.38 E-value=23 Score=22.55 Aligned_cols=22 Identities=32% Similarity=0.875 Sum_probs=15.5
Q ss_pred cccccccccccCCCCCcCCcccch
Q 025379 71 GVRFCQKCNQFKPPRCHHCSVCRR 94 (253)
Q Consensus 71 ~~~~C~~C~~~kP~Rs~HC~~C~~ 94 (253)
..+.|+.|..+-- ...|..||.
T Consensus 4 ~mr~C~~Cg~YTL--k~~CP~CG~ 25 (60)
T 2aus_D 4 RIRKCPKCGRYTL--KETCPVCGE 25 (60)
T ss_dssp CCEECTTTCCEES--SSBCTTTCS
T ss_pred cceECCCCCCEEc--cccCcCCCC
Confidence 4678888887766 556777764
No 27
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=26.36 E-value=48 Score=18.09 Aligned_cols=20 Identities=25% Similarity=0.805 Sum_probs=10.6
Q ss_pred ccccccccCCCCCcCCcccc
Q 025379 74 FCQKCNQFKPPRCHHCSVCR 93 (253)
Q Consensus 74 ~C~~C~~~kP~Rs~HC~~C~ 93 (253)
.|+.|...--+|-..|..|+
T Consensus 8 ~C~~C~~~Nfa~R~~C~~C~ 27 (33)
T 2k1p_A 8 QCKTCSNVNWARRSECNMCN 27 (33)
T ss_dssp BCSSSCCBCCTTCSBCSSSC
T ss_pred ccCCCCCccccccccccccC
Confidence 45555555555555555544
No 28
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=26.22 E-value=25 Score=30.75 Aligned_cols=31 Identities=19% Similarity=0.541 Sum_probs=21.4
Q ss_pred ccccccccccccC---CCCCcCCcccc-----hhhcccc
Q 025379 70 QGVRFCQKCNQFK---PPRCHHCSVCR-----RCILKMD 100 (253)
Q Consensus 70 ~~~~~C~~C~~~k---P~Rs~HC~~C~-----~CV~~~D 100 (253)
....+|..|+..- -.|-|||+.|+ +|..+..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 4568999998543 35789998885 4655544
No 29
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=25.91 E-value=30 Score=25.68 Aligned_cols=26 Identities=35% Similarity=0.861 Sum_probs=16.9
Q ss_pred cccccccccccccCCCC--------CcCCcccch
Q 025379 69 HQGVRFCQKCNQFKPPR--------CHHCSVCRR 94 (253)
Q Consensus 69 ~~~~~~C~~C~~~kP~R--------s~HC~~C~~ 94 (253)
....+||+.|+..-.|+ -.-|+.|+-
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 45689999998654333 266777764
No 30
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=24.43 E-value=24 Score=24.04 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=9.4
Q ss_pred ccccccccccCCCCCcCCccc
Q 025379 72 VRFCQKCNQFKPPRCHHCSVC 92 (253)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C 92 (253)
.-||.+| ++||..|
T Consensus 24 ~CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 24 RAHAKKS-------AYHSQVA 37 (86)
T ss_dssp CSSTTTT-------TTTCCCS
T ss_pred Cceecch-------hhhhhHH
Confidence 4566666 4788776
No 31
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.40 E-value=16 Score=32.32 Aligned_cols=25 Identities=32% Similarity=0.752 Sum_probs=0.0
Q ss_pred cccccccccc--CCCCCcCCcccchhh
Q 025379 72 VRFCQKCNQF--KPPRCHHCSVCRRCI 96 (253)
Q Consensus 72 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 96 (253)
..-|..|... --.|-|||+.||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 4568888742 234789999999743
No 32
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=23.65 E-value=17 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=14.1
Q ss_pred cccccccccccccccCCC
Q 025379 67 PKHQGVRFCQKCNQFKPP 84 (253)
Q Consensus 67 ~~~~~~~~C~~C~~~kP~ 84 (253)
+.....+.|.+|+.+||.
T Consensus 70 ~~~~G~K~C~~Cg~~Kp~ 87 (200)
T 3gox_A 70 GKGYDKKICNICHILKNT 87 (200)
T ss_dssp STTSSEEECTTTCBEEEG
T ss_pred cccCCCeECCCCCCCcch
Confidence 455678999999988764
No 33
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.23 E-value=28 Score=22.12 Aligned_cols=22 Identities=27% Similarity=0.702 Sum_probs=15.0
Q ss_pred ccccccccccccCCCCCcC-Ccccc
Q 025379 70 QGVRFCQKCNQFKPPRCHH-CSVCR 93 (253)
Q Consensus 70 ~~~~~C~~C~~~kP~Rs~H-C~~C~ 93 (253)
.....|++|+..+ ++|| |..||
T Consensus 28 p~l~~c~~cGe~~--~~H~vc~~CG 50 (60)
T 3v2d_5 28 PTLVPCPECKAMK--PPHTVCPECG 50 (60)
T ss_dssp CCCEECTTTCCEE--CTTSCCTTTC
T ss_pred CceeECCCCCCee--cceEEcCCCC
Confidence 4567899998754 4455 77776
No 34
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.47 E-value=34 Score=18.90 Aligned_cols=19 Identities=26% Similarity=0.819 Sum_probs=11.2
Q ss_pred cccccccCCCCCcCCcccc
Q 025379 75 CQKCNQFKPPRCHHCSVCR 93 (253)
Q Consensus 75 C~~C~~~kP~Rs~HC~~C~ 93 (253)
|+.|-..-++.+.+|..|.
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 6666666555566665553
No 35
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.19 E-value=34 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=17.4
Q ss_pred cccccccccc---CCCCCcCCcccchhhc
Q 025379 72 VRFCQKCNQF---KPPRCHHCSVCRRCIL 97 (253)
Q Consensus 72 ~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 97 (253)
.-.|..|+.. ++.-+-||+.|+.-|+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 3468889754 4455678888886443
No 36
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=20.91 E-value=22 Score=24.25 Aligned_cols=14 Identities=57% Similarity=1.720 Sum_probs=8.8
Q ss_pred ccccccccccCCCCCcCCccc
Q 025379 72 VRFCQKCNQFKPPRCHHCSVC 92 (253)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C 92 (253)
.-||.+| ++||..|
T Consensus 24 ~CYCKkC-------cyHCq~C 37 (86)
T 3mi9_C 24 NCYCKKC-------CFHCQVC 37 (86)
T ss_dssp SCCSTTG-------GGSSHHH
T ss_pred Cccccch-------hhhhhhh
Confidence 4577776 4677655
No 37
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.75 E-value=90 Score=20.65 Aligned_cols=38 Identities=18% Similarity=0.426 Sum_probs=21.8
Q ss_pred ccccccccccCCCCCcCCcccch--hh---ccccccCccccccc
Q 025379 72 VRFCQKCNQFKPPRCHHCSVCRR--CI---LKMDHHCVWVVNCV 110 (253)
Q Consensus 72 ~~~C~~C~~~kP~Rs~HC~~C~~--CV---~~~DHHC~w~~nCI 110 (253)
.+.|..|+..--.=...|+ |+. |- +-=||.|++--.-.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAE 67 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGT
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhh
Confidence 4578888764222247777 654 22 22388888754433
No 38
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=20.02 E-value=17 Score=20.07 Aligned_cols=8 Identities=38% Similarity=1.477 Sum_probs=5.6
Q ss_pred cCCcccch
Q 025379 87 HHCSVCRR 94 (253)
Q Consensus 87 ~HC~~C~~ 94 (253)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 37888765
Done!