BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025380
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94903|PROSC_HUMAN Proline synthase co-transcribed bacterial homolog protein OS=Homo
sapiens GN=PROSC PE=1 SV=1
Length = 275
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 151/231 (65%), Gaps = 12/231 (5%)
Query: 27 AASAATDGVAATALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHR 84
A S + + ALR+V +RV QA R R P + R+VAVSKTKP ++ + Y G R
Sbjct: 4 AGSMSAELGVGCALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQR 63
Query: 85 CFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKI 139
FGENYVQE++EKA+ L +++WHFIG+LQ V L+A VPNL M+E+VD+ K+
Sbjct: 64 TFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKL 122
Query: 140 AGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMT 198
A ++N + G + LKV+VQ+NTSGEESK G+ PS + +V+H++ CPNLEF GLMT
Sbjct: 123 ADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMT 182
Query: 199 IGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
IG D + P +F+ L R E+CK L IP +Q +LSMGMS DF+ AV
Sbjct: 183 IGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAV 233
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthase co-transcribed bacterial homolog protein OS=Mus
musculus GN=Prosc PE=1 SV=1
Length = 274
Score = 194 bits (492), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 150/220 (68%), Gaps = 14/220 (6%)
Query: 39 ALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVE 96
ALR+V +RV Q+ R R P + R+VAVSKTKP ++ + Y G R FGENYVQE++E
Sbjct: 16 ALRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLE 75
Query: 97 KAAQLPD------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETM 150
KA+ P +++WHFIG+LQ V L+A VPNL+M+E+VD+ K+A ++N +
Sbjct: 76 KASN-PKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKK 133
Query: 151 G-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTST 207
G +PLKV+VQ+NTSGE+SK G+ PS + +V+H+ +CP+LEF GLMTIG D +
Sbjct: 134 GPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQG 193
Query: 208 PE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
P +F+ L R E+C+ LGIP EQ +LSMGMS DF+ A+
Sbjct: 194 PNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAI 233
>sp|Q5R4Z1|PROSC_PONAB Proline synthase co-transcribed bacterial homolog protein OS=Pongo
abelii GN=PROSC PE=2 SV=1
Length = 275
Score = 193 bits (491), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 151/231 (65%), Gaps = 12/231 (5%)
Query: 27 AASAATDGVAATALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHR 84
A S + + ALR+V +RV QA R P + R+VAVSKTKP ++ + Y G R
Sbjct: 4 AGSMSAELGVGCALRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQR 63
Query: 85 CFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKI 139
FGENYVQE++EKA+ L +++WHFIG+LQ V L+A VPNL ++E+VD+ K+
Sbjct: 64 TFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKL 122
Query: 140 AGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMT 198
AG++N + G + LKV+VQ+NTSGEESK G+ PS + +V+H++ CPNLEF GLMT
Sbjct: 123 AGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMT 182
Query: 199 IGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
IG D + P +F+ L R E+CK L IP +Q +LSMGMS DF+ A+
Sbjct: 183 IGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAI 233
>sp|Q3T0G5|PROSC_BOVIN Proline synthase co-transcribed bacterial homolog protein OS=Bos
taurus GN=PROSC PE=2 SV=1
Length = 273
Score = 190 bits (483), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 146/220 (66%), Gaps = 14/220 (6%)
Query: 39 ALRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVE 96
ALR+V +RV QA R R P + R+VAVSKTKP ++ + Y G R FGENYVQE++E
Sbjct: 16 ALRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLE 75
Query: 97 KAAQLPD------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETM 150
KA+ P +++WHFIG+LQ V L+A VPNL+M+E+VD+ K+A ++N +
Sbjct: 76 KASN-PQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKK 133
Query: 151 GR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTST 207
G + LKV+VQ+NTSGE SK G+ P+ LV+H++ CP+LEF GLMTIG D +
Sbjct: 134 GSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQG 193
Query: 208 PE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
P +F+ L R E+C+ LG P EQ +LSMGMS DF+ A+
Sbjct: 194 PNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAI 233
>sp|Q1ZXI6|PROSC_DICDI Proline synthase co-transcribed bacterial homolog protein
OS=Dictyostelium discoideum GN=prosc PE=3 SV=2
Length = 255
Score = 181 bits (458), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 143/224 (63%), Gaps = 18/224 (8%)
Query: 38 TALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK 97
++ +++ RV + + R +++VAVSKTKP +IR +Y+ GHR FGENY+QE+V K
Sbjct: 12 SSYKNIKDRVEIISNKFDR--HNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSK 69
Query: 98 AAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR---------- 145
+ +L ++++WHFIG++QSNK K +L V NL +VE+V+N+KI +L +
Sbjct: 70 SEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNN 128
Query: 146 MVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV--SQNCPN-LEFCGLMTIGMP 202
K L +++QVNTSGEESKSG +P CL+LVKH NC N L F GLMTIG P
Sbjct: 129 NNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNP 188
Query: 203 DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
+ T +FK L C++ + K L IP + +LSMGMS DFE A+
Sbjct: 189 NATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAI 232
>sp|Q9P6Q1|YKC9_SCHPO UPF0001 protein C644.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC644.09 PE=3 SV=1
Length = 237
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 119/190 (62%), Gaps = 9/190 (4%)
Query: 61 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKP 120
+ +VAVSK PV + + Y AG R FGENY+QE ++K +PDD++WHFIG+LQS+K K
Sbjct: 24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK 83
Query: 121 LLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLEL 180
+A V NL +E++D EK A +N E + + PL V +QVNTSGEE+K GV PS LEL
Sbjct: 84 -IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLEL 141
Query: 181 VKHVSQNCPNLEFCGLMTIGMPDYTSTPE---NFKTLAKCRSEVCKALGIPEEQCDLSMG 237
K V Q+ L GLMTIG + + +F+ L+ R + LGIP LSMG
Sbjct: 142 CKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIP---LQLSMG 197
Query: 238 MSGDFELAVR 247
MS D+ LA++
Sbjct: 198 MSSDYLLAIK 207
>sp|Q9CPD5|Y112_PASMU UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70)
GN=PM0112 PE=3 SV=1
Length = 233
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 130/214 (60%), Gaps = 13/214 (6%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA- 98
L + Q + A +++ RP ++++AVSKTKPV I Q Y+AG FGENYVQE VEK
Sbjct: 7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQ 66
Query: 99 --AQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLK 156
AQ LEWHFIG LQSNK K L+A + ++++D +KIA RLN +KPL
Sbjct: 67 YFAQKNIPLEWHFIGPLQSNKTK-LVA--EHFDWMQTLDRKKIADRLNEQ-RPHYKKPLN 122
Query: 157 VLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP--DYTSTPENFKTL 214
VL+Q+N S E+SKSG++P+ L+L K + QN P+L GLM I P D + + F +
Sbjct: 123 VLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPHLCLRGLMAIPAPTDDLATQEQAFTQM 181
Query: 215 AKCRSEVCKALGIPEEQCD-LSMGMSGDFELAVR 247
++ +AL P+ Q D LSMGM+ D A++
Sbjct: 182 HSLFEQLKQAL--PDAQIDTLSMGMTDDMASAIQ 213
>sp|P44506|Y090_HAEIN UPF0001 protein HI_0090 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0090 PE=1 SV=1
Length = 237
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 129/214 (60%), Gaps = 13/214 (6%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L + Q++ A + +R + ++++AVSKTKP+S I Y+AG FGENYVQE VEK
Sbjct: 7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQ 66
Query: 100 QLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLK 156
+LEWHFIG LQSNK + L+A + ++++D KIA RLN T + PL
Sbjct: 67 YFESQGINLEWHFIGPLQSNKTR-LVA--EHFDWMQTLDRAKIADRLNEQRPT-NKAPLN 122
Query: 157 VLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FKTL 214
VL+Q+N S EESKSG++P L L KH+ +N P+L GLM I P D + EN F+ +
Sbjct: 123 VLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKM 181
Query: 215 AKCRSEVCKALGIPEEQCD-LSMGMSGDFELAVR 247
+ ++ + L P +Q D LSMGM+ D A++
Sbjct: 182 LELFEQLKQVL--PNQQIDTLSMGMTDDMPSAIK 213
>sp|Q9KUQ4|Y461_VIBCH UPF0001 protein VC_0461 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_0461 PE=3 SV=1
Length = 236
Score = 144 bits (363), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 125/212 (58%), Gaps = 17/212 (8%)
Query: 43 VIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP 102
+ ++ A ++ R ++++AVSKTKPV I + +AG R FGENYVQE V+K
Sbjct: 11 ITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFA 70
Query: 103 DD-----LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKV 157
+ LEWHFIG LQSNK + L+A + V ++D EKIA RL+ + PL+V
Sbjct: 71 EHHPQLALEWHFIGPLQSNKTR-LVA--EHFDWVHTIDREKIALRLSEQ-RPVNMPPLQV 126
Query: 158 LVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLA 215
L+QVNTSGE SKSG+EP L + +S+ PNL GLM+I +PDY + F LA
Sbjct: 127 LIQVNTSGEASKSGIEPQQLFTLAELISR-LPNLTLRGLMSIPENVPDYPAQLAAFTQLA 185
Query: 216 KCRSEVCKALGIPEEQCD-LSMGMSGDFELAV 246
+ + ++ + Q D LSMGMSGD + A+
Sbjct: 186 ELQQQLAQKY----PQIDTLSMGMSGDMQAAI 213
>sp|P52055|YPI1_VIBAL UPF0001 protein in pilT-proC intergenic region OS=Vibrio
alginolyticus PE=3 SV=1
Length = 233
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 125/214 (58%), Gaps = 15/214 (7%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK-- 97
+ + ++ ++ R P+ ++++AVSKTKPV I + Y+AG FGENYVQE V K
Sbjct: 8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQ 67
Query: 98 --AAQLPDD-LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKP 154
A PD+ +EWHFIG +QSNK + L+A + V ++D KIA RLN + KP
Sbjct: 68 HFAEHYPDNRIEWHFIGPIQSNKSR-LVA--EHFDWVHTIDRTKIAQRLNDQRPS-ELKP 123
Query: 155 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFK 212
L+VL+QVNTSGE SKSGV + EL + +S+ PNL GLM+I + DY S F+
Sbjct: 124 LQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQ 182
Query: 213 TLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
LA + + PE LSMGMSGD A+
Sbjct: 183 KLATLKQTLEAQF--PEIDT-LSMGMSGDMTAAI 213
>sp|P52057|PROSC_CAEEL Proline synthase co-transcribed bacterial homolog protein
OS=Caenorhabditis elegans GN=F09E5.8 PE=3 SV=1
Length = 244
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 10/220 (4%)
Query: 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEI 94
+ +L ++I+ V A +S+ R R+VAVSKTK +I Y R FGENYVQE+
Sbjct: 5 IVQKSLFNIIEAVADAV-TASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQEL 63
Query: 95 VEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG 151
EK+ L D+ WHFIG +QSNK+ + P L VE+V+ EK A ++ G
Sbjct: 64 EEKSDVLASKCLDIRWHFIGQVQSNKIGKI-CNSPGLWCVETVETEKHARIFDKEWSKHG 122
Query: 152 R--KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT-STP 208
PL+VLVQVNTSGE++K G+E +L + + + C NL+F G MTIG D + ++
Sbjct: 123 ANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASG 182
Query: 209 EN--FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
EN F+ L K R + G + +LSMGMS DF A+
Sbjct: 183 ENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAI 222
>sp|O66631|Y274_AQUAE UPF0001 protein aq_274 OS=Aquifex aeolicus (strain VF5) GN=aq_274
PE=3 SV=1
Length = 228
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 26/222 (11%)
Query: 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIV 95
A L V++R+ +A ER+ R + +++ SKT P VIR+ Y G + +GEN VQE +
Sbjct: 3 ACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFL 62
Query: 96 EKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL------NRMVE 148
+K L D DLEWHFIG LQ+NKVK L+ V ++ S+D + +A + N +V+
Sbjct: 63 KKYEALKDLDLEWHFIGRLQTNKVKYLMGKV---VLIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 149 TMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTP 208
VL++VN GEE+K GVEP EL ++ + PN++ GLMTI P Y P
Sbjct: 120 D-------VLIEVNVGGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTI--PPYLENP 169
Query: 209 EN----FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
E+ F+ L + R E+ + + LSMGMS DFE+A+
Sbjct: 170 EDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHDFEVAI 209
>sp|P38197|YBD6_YEAST UPF0001 protein YBL036C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YBL036C PE=1 SV=1
Length = 257
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 120/199 (60%), Gaps = 18/199 (9%)
Query: 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVK 119
+I ++ VSK KP S I+ +Y+ G R FGENYVQE++EKA LPDD++WHFIG LQ+NK K
Sbjct: 41 KILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCK 100
Query: 120 PLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-----KPLKVLVQVNTSGEESKSGVEP 174
LA VPNL VE++D+ K A +LN E+ + P+ VQ+NTS E+ KSG+
Sbjct: 101 D-LAKVPNLYSVETIDSLKKAKKLN---ESRAKFQPDCNPILCNVQINTSHEDQKSGLNN 156
Query: 175 SG-CLELVK-HVSQNCPNLEFCGLMTIGMPD--YTSTPEN--FKTLAKCRSEVCKALGIP 228
E++ +S+ C ++ GLMTIG + + + EN F TL + + ++ G
Sbjct: 157 EAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTS 216
Query: 229 EEQCDLSMGMSGDFELAVR 247
LSMGMS DF A+R
Sbjct: 217 ---LKLSMGMSADFREAIR 232
>sp|O25156|Y395_HELPY UPF0001 protein HP_0395 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0395 PE=3 SV=1
Length = 222
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 14/210 (6%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
+ ++I ++ +A SR ++IVAVSK I+ Y R FGEN VQ++ K
Sbjct: 8 IDALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMH 66
Query: 100 QLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVL 158
L LEWH IG+LQ NK+ LL+ P A++ S+D+ K+A ++ + E +G L L
Sbjct: 67 SLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNAL 123
Query: 159 VQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAK 216
+QVN++ EESKSGV P LE+ +S+ C +L+ GLM IG D ++F T K
Sbjct: 124 LQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKK 183
Query: 217 CRSEVCKALGIPEEQCDLSMGMSGDFELAV 246
++ A LSMGMS DFELA+
Sbjct: 184 LFDQIKNA-------SVLSMGMSDDFELAI 206
>sp|Q9ZKF2|Y395_HELPJ UPF0001 protein jhp_0986 OS=Helicobacter pylori (strain J99)
GN=jhp_0986 PE=3 SV=1
Length = 222
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 114/208 (54%), Gaps = 14/208 (6%)
Query: 42 SVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQL 101
++I ++ +A SR ++IVAVSK I+ Y R FGEN VQ++ K L
Sbjct: 10 TLITKIEKARIAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSL 68
Query: 102 PD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQ 160
LEWH IG+LQ NK+ LL+ P A++ S+D+ K+A ++ + E +G L L+Q
Sbjct: 69 EHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQ 125
Query: 161 VNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKCR 218
VN++ EESKSGV P LE +S+ C L+ GLM IG D T ++F T K
Sbjct: 126 VNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLF 185
Query: 219 SEVCKALGIPEEQCDLSMGMSGDFELAV 246
++ A LSMGMS DFELA+
Sbjct: 186 DQIKNA-------SVLSMGMSDDFELAI 206
>sp|P24562|Y394_PSEAE UPF0001 protein PA0394 OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0394 PE=3 SV=1
Length = 230
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 43 VIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP 102
V R+ +AA+ + R P + ++AVSKTKP + +R+ + AG R FGENY+QE + K A+L
Sbjct: 11 VAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELA 70
Query: 103 D-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQV 161
D L WHFIG +QSNK +P+ + V SVD KIA RL+ G PL V +QV
Sbjct: 71 DLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQ-RPAGLPPLNVCLQV 126
Query: 162 NTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEV 221
N SGE SKSG P L + V Q PNL GLM I P T E A
Sbjct: 127 NVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEP----TAERAAQHAAFARLR 181
Query: 222 CKALGIPEEQCDLSMGMSGDFELAV 246
L + LSMGMS D E A+
Sbjct: 182 ELLLDLNLGLDTLSMGMSDDLEAAI 206
>sp|P67080|YGGS_ECOLI UPF0001 protein YggS OS=Escherichia coli (strain K12) GN=yggS PE=1
SV=1
Length = 234
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 113/216 (52%), Gaps = 20/216 (9%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L V ++ AA R R P+ I ++AVSKTKP S I + +AG R FGENYVQE V+K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 100 QLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRK 153
+ LEWHFIG LQSNK + L+A + ++D +IA RLN R E
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSR-LVA--EHFDWCHTIDRLRIATRLNDQRPAEL---P 121
Query: 154 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKT 213
PL VL+Q+N S E SKSG++ + EL V++ P L GLM I P+ E +
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 214 LAKCRSEVCKALGIPEE--QCD-LSMGMSGDFELAV 246
R G+ D LS+GMS D E A+
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAI 212
>sp|P67081|YGGS_ECOL6 UPF0001 protein YggS OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=yggS PE=3 SV=1
Length = 234
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 113/216 (52%), Gaps = 20/216 (9%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L V ++ AA R R P+ I ++AVSKTKP S I + +AG R FGENYVQE V+K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 100 QLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRK 153
+ LEWHFIG LQSNK + L+A + ++D +IA RLN R E
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSR-LVA--EHFDWCHTIDRLRIATRLNDQRPAEL---P 121
Query: 154 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKT 213
PL VL+Q+N S E SKSG++ + EL V++ P L GLM I P+ E +
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 214 LAKCRSEVCKALGIPEE--QCD-LSMGMSGDFELAV 246
R G+ D LS+GMS D E A+
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAI 212
>sp|P67082|YGGS_ECO57 UPF0001 protein YggS OS=Escherichia coli O157:H7 GN=yggS PE=3 SV=1
Length = 234
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 113/216 (52%), Gaps = 20/216 (9%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
L V ++ AA R R P+ I ++AVSKTKP S I + +AG R FGENYVQE V+K
Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67
Query: 100 QLPD----DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLN--RMVETMGRK 153
+ LEWHFIG LQSNK + L+A + ++D +IA RLN R E
Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSR-LVA--EHFDWCHTIDRLRIATRLNDQRPAEL---P 121
Query: 154 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKT 213
PL VL+Q+N S E SKSG++ + EL V++ P L GLM I P+ E +
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAE-LPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 214 LAKCRSEVCKALGIPEE--QCD-LSMGMSGDFELAV 246
R G+ D LS+GMS D E A+
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAI 212
>sp|O31727|YLME_BACSU UPF0001 protein YlmE OS=Bacillus subtilis (strain 168) GN=ylmE PE=3
SV=1
Length = 230
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 113/210 (53%), Gaps = 12/210 (5%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
LR + +R+++A RS R D + ++AV+K ++ +AG C GEN E++ K
Sbjct: 7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQE 66
Query: 100 QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLV 159
+ + EWHFIG+LQS K K + V +++ + S+D +A + +E ++ V
Sbjct: 67 LMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFV 119
Query: 160 QVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIG--MPDYTSTPENFKTLAKC 217
QVNTS E SK G++ + ++ +S ++ GLMT+ D F++L +
Sbjct: 120 QVNTSLEPSKHGMKKEEVIPFIQELS-GFEHILVAGLMTMAPLTDDQDQIRSCFRSLREL 178
Query: 218 RSEVCKALGIPEEQC-DLSMGMSGDFELAV 246
R +V K L P C +LSMGMS DFE+A+
Sbjct: 179 RDQVQK-LNQPNAPCTELSMGMSNDFEIAI 207
>sp|P52056|Y556_SYNY3 UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr0556 PE=3 SV=1
Length = 218
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 109/203 (53%), Gaps = 31/203 (15%)
Query: 58 PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQS 115
P +R+VAV+KTK ++ I Y AG R F E+ +QE + K L + D+ WHFIG LQS
Sbjct: 15 PPSVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQS 74
Query: 116 NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS 175
NK + + V N + SVDN IA +L+R+ E + + P + L+Q+ +E+KSG
Sbjct: 75 NKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSGWTRE 130
Query: 176 GC------LELVKHVSQNCPNLEFCGLMTIGMP------DYTSTPENFKTLAKCRSEVCK 223
LEL+K NL+ CGLMTI +P D T K LA ++
Sbjct: 131 ELKLDLPQLELLK-------NLKICGLMTI-LPLGLSPGDRQLTFGELKNLATAINQ-QS 181
Query: 224 ALGIPEEQCDLSMGMSGDFELAV 246
+L + E LSMGMSGD+ A+
Sbjct: 182 SLSLTE----LSMGMSGDYPEAI 200
>sp|Q8K929|Y531_BUCAP UPF0001 protein BUsg_531 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=BUsg_531 PE=3 SV=1
Length = 229
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 18/202 (8%)
Query: 52 ERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHF 109
++++ P +I+I+AVSK + + I+ +G FGENYVQE ++K +L ++ WHF
Sbjct: 20 KKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHF 79
Query: 110 IGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESK 169
IG +QSNK K + N +++D EKIA LN+ E P+ VL+Q+N S E +K
Sbjct: 80 IGKVQSNKTKII---AENFDWCQTIDREKIAILLNKYREKKSF-PMNVLMQINISNEVTK 135
Query: 170 SGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPD----YTSTPENFKTLAKCRSEVCKAL 225
+G+ +L K +S PNL F G+M MP+ +N+K +E+ K
Sbjct: 136 NGICIKNYKKLAKTISL-MPNLNFRGIMM--MPEVEKKMIKQNDNYKNGNFIFNELKKEY 192
Query: 226 GIPEEQCD-LSMGMSGDFELAV 246
+ D LS+G S D E A+
Sbjct: 193 ----QSIDTLSLGTSFDIENAL 210
>sp|Q9RUL6|Y1368_DEIRA UPF0001 protein DR_1368 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1368 PE=3 SV=1
Length = 209
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 42 SVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQ 100
+V+ + +A ++ R +R+VAV+K + IR QV G EN QE+ +K A
Sbjct: 5 AVLAGIREAEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQELRDKVAG 64
Query: 101 LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQ 160
LP EWHFIG LQ NK+K L + +V S++ A + G+ P +L +
Sbjct: 65 LPG-AEWHFIGPLQRNKIKYLR----GVTLVHSIEEPWQAQAIADAAAEWGQAPAVLLQR 119
Query: 161 VNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSE 220
N GE K GV P +++ V LE GLM M Y + A +
Sbjct: 120 HN--GEGQKHGVLPDDLPAVLREV--RATGLEVRGLMA--MAPYDDEARAAQVFADTARQ 173
Query: 221 VCKALGIPEEQCDLSMGMSGDFELAV 246
+ LG+ +LSMGMSGD+ LAV
Sbjct: 174 -AQDLGL----VELSMGMSGDYPLAV 194
>sp|O24748|Y2153_CORGL UPF0001 protein Cgl2153/cg2364 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl2153 PE=3 SV=2
Length = 221
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 46 RVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDL 105
R+ +RP +R++ V+K PV I+ + E G GEN QE KA +LP D+
Sbjct: 4 RIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP-DM 62
Query: 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVE-TMGR-----KPLKVLV 159
++H IG +QS K + A V SVD+EKIA L R V + R L +
Sbjct: 63 DFHMIGQIQSKKANSIARWA---AAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFI 119
Query: 160 QVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRS 219
Q++ G+ S+ G S +L +S + +L F GLM + P PE K ++ R
Sbjct: 120 QLSLDGDPSRGGTPLSQVTQLADCIS-DTTHLRFEGLMCV--PPLGWGPE--KAFSQAR- 173
Query: 220 EVCKALGIPEEQCD----LSMGMSGDFELAVRN 248
+V L EE D S GMSGD A+++
Sbjct: 174 DVLSGL---EEHFDRSLEFSAGMSGDLVAAIKH 203
>sp|Q9CCE2|Y919_MYCLE UPF0001 protein ML0919 OS=Mycobacterium leprae (strain TN)
GN=ML0919 PE=3 SV=2
Length = 257
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 18/224 (8%)
Query: 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA 98
AL +V R+ A++ + R I ++ +SK P + + + G R GE+ QE KA
Sbjct: 18 ALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKA 77
Query: 99 AQLPD----------DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVE 148
A+ + + WH +G +Q NKV+ L ++S+ R
Sbjct: 78 AEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAAL 137
Query: 149 TMGRK--PLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIGMPDY 204
GR+ PL+V VQ++ G+ S+ GV + G ++ V + +LE GLM G+P
Sbjct: 138 AGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLM--GIPPL 195
Query: 205 TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRN 248
P+ + + R E + L + LS GMS DFE+AV++
Sbjct: 196 GWNPD--QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKH 237
>sp|P57614|Y549_BUCAI UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=BU549 PE=3 SV=1
Length = 200
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 14/145 (9%)
Query: 60 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNK 117
+I I+AVSK + ++ I + +G FGENY+QE + K L ++ WHFIG +QSNK
Sbjct: 3 KITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNK 62
Query: 118 VKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGC 177
K + N + ++VD EKIA LN+ P+ VL+Q+N E ++ +
Sbjct: 63 TKKI---AQNFSWCQTVDREKIAVLLNKF-RPKNLPPINVLIQINNLKE-----LQNNRY 113
Query: 178 LELVKHVSQ---NCPNLEFCGLMTI 199
++ + ++Q + PNL G+M +
Sbjct: 114 IDQYQELAQLILSMPNLNLRGIMAV 138
>sp|Q89A48|Y497_BUCBP UPF0001 protein bbp_497 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=bbp_497 PE=3 SV=1
Length = 223
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 40 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAA 99
++ + Q++ +++ +I+++AVSK + V+ I++ G FGENYVQE +
Sbjct: 8 IKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQE-SQPKI 66
Query: 100 QLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLV 159
+L +++EWH+IG +QSNK + N + ++ N+K A LN+ L L+
Sbjct: 67 KLFNNIEWHYIGQIQSNKAHII---AKNFSWCHTITNKKTAVLLNKY-RPYSLPKLNTLI 122
Query: 160 QVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTST 207
Q+N + +L K ++ + NL G+M MP + +T
Sbjct: 123 QINIRDNTINIDDDIETIKQLAKTIN-SLDNLNLRGIM--AMPYFKNT 167
>sp|P67084|Y2172_MYCBO UPF0001 protein Mb2172c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2172c PE=3 SV=1
Length = 258
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 25/228 (10%)
Query: 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA 98
AL ++ R+ AAE + R I ++ ++K P + + ++ G R GE+ QE K
Sbjct: 18 ALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEASAKM 77
Query: 99 AQL-----------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV 147
A+L + WH +G +Q NK L SVD+ ++ L+R V
Sbjct: 78 AELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAV 134
Query: 148 -----ETMGRKPLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIG 200
E + L+V VQV+ G+ S+ GV+ + G ++ + Q LE GLM G
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLM--G 192
Query: 201 MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRN 248
+P P+ + + +SE + + LS GMS D E+AV++
Sbjct: 193 IPPLDWDPD--EAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKH 238
>sp|P67083|Y2148_MYCTU UPF0001 protein Rv2148c/MT2207 OS=Mycobacterium tuberculosis
GN=Rv2148c PE=3 SV=1
Length = 258
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 25/228 (10%)
Query: 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA 98
AL ++ R+ AAE + R I ++ ++K P + + ++ G R GE+ QE K
Sbjct: 18 ALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEASAKM 77
Query: 99 AQL-----------PDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMV 147
A+L + WH +G +Q NK L SVD+ ++ L+R V
Sbjct: 78 AELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHT---AHSVDSSRLVTALDRAV 134
Query: 148 -----ETMGRKPLKVLVQVNTSGEESKSGVEPS--GCLELVKHVSQNCPNLEFCGLMTIG 200
E + L+V VQV+ G+ S+ GV+ + G ++ + Q LE GLM G
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLM--G 192
Query: 201 MPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRN 248
+P P+ + + +SE + + LS GMS D E+AV++
Sbjct: 193 IPPLDWDPD--EAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKH 238
>sp|A5CRU0|Y1747_CLAM3 UPF0042 nucleotide-binding protein CMM_1747 OS=Clavibacter
michiganensis subsp. michiganensis (strain NCPPB 382)
GN=CMM_1747 PE=3 SV=1
Length = 291
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 103 DDLEWHFIGNLQSNKVKPL--LAG-----VPNLAMVESVDNEKIAGRLNRMVETMGRKP- 154
+DL W+ + NL +KPL LAG +P +A V V L +++T G P
Sbjct: 29 EDLGWYVVDNLPPQMLKPLVELAGRAGTSLPKIAAVVDVRGGDFFSELRDILQTFGTGPR 88
Query: 155 LKVL 158
L+VL
Sbjct: 89 LRVL 92
>sp|Q6AF48|Y1149_LEIXX UPF0042 nucleotide-binding protein Lxx11490 OS=Leifsonia xyli
subsp. xyli (strain CTCB07) GN=Lxx11490 PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 103 DDLEWHFIGNLQSNKVKPLL-------AGVPNLAMVESVDNEKIAGRLNRMVETMGRKPL 155
+DL+W+ + NL ++PL+ +G+P +A V V L M++++ R+
Sbjct: 33 EDLDWYVVDNLPPQMLRPLIELANRAESGLPRIAAVVDVRGRNFFADLQEMIQSL-REGT 91
Query: 156 KVLV 159
KV V
Sbjct: 92 KVRV 95
>sp|Q5FTZ5|RL5_GLUOX 50S ribosomal protein L5 OS=Gluconobacter oxydans (strain 621H)
GN=rplE PE=3 SV=1
Length = 187
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESV-DNEKIAGRLNRMVETMGRKPLKVLVQVNTS 164
++ + LQ K++ + V N+ + E+ D +K+ + M G+KP+K L + +
Sbjct: 26 QFGYANELQVPKLEKI---VLNMGVGEAAGDQKKLDAAVAEMTVISGQKPVKTLARKAIA 82
Query: 165 GEESKSGVEPSGCLELVKHVSQNCPNLEFCG-LMTIGMP---DYTSTPEN 210
G + + G+ P GC K + EF L+TI MP D+ P N
Sbjct: 83 GFKIREGL-PIGC----KVTLRRARMYEFLDRLVTIAMPRIRDFRGLPAN 127
>sp|A4QDQ6|SYE_CORGB Glutamate--tRNA ligase OS=Corynebacterium glutamicum (strain R)
GN=gltX PE=3 SV=1
Length = 496
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR-MVETMGRKPLKVL--VQVNTSGE 166
NL+ V+PL AG+ L VE I LN+ ++E +G KP +++ SGE
Sbjct: 404 NLKETAVEPLNAGIAALEAVEEWTTPNIEAALNKALIEDLGLKPRVAFGALRIGISGE 461
>sp|Q8NQX9|SYE_CORGL Glutamate--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=gltX PE=3 SV=2
Length = 493
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNR-MVETMGRKPLKVL--VQVNTSGE 166
NL+ V+PL AG+ L VE I LN+ ++E +G KP +++ SGE
Sbjct: 401 NLKETAVEPLNAGIAALEAVEEWTTPNIEAALNKALIEDLGLKPRVAFGALRIGISGE 458
>sp|Q8D8J6|PYRF_VIBVU Orotidine 5'-phosphate decarboxylase OS=Vibrio vulnificus (strain
CMCP6) GN=pyrF PE=3 SV=1
Length = 232
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V + P S +V + FG ++V+E+ ++ + DL++H I N S V+
Sbjct: 22 VDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E+S
Sbjct: 82 VWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQS 125
>sp|Q7MLX2|PYRF_VIBVY Orotidine 5'-phosphate decarboxylase OS=Vibrio vulnificus (strain
YJ016) GN=pyrF PE=3 SV=1
Length = 232
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V + P S +V + FG ++V+E+ ++ + DL++H I N S V+
Sbjct: 22 VDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E+S
Sbjct: 82 VWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQS 125
>sp|A7MUN7|PYRF_VIBHB Orotidine 5'-phosphate decarboxylase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=pyrF PE=3 SV=1
Length = 233
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V + P S +V + FG ++V+E+ ++ + DL++H I N S V+
Sbjct: 22 VDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E+S
Sbjct: 82 VWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQS 125
>sp|Q87N49|PYRF_VIBPA Orotidine 5'-phosphate decarboxylase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=pyrF PE=3 SV=1
Length = 233
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V + P S +V + FG ++V+E+ ++ + DL++H I N S V+
Sbjct: 22 VDRIDPASCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVRAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E+S
Sbjct: 82 VWMVNVHASGGERMMTASREILEPYGKDRPLLIGVTVLTSMEQS 125
>sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo
sapiens GN=ABTB2 PE=2 SV=1
Length = 839
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAG 124
+ +K SVI+Q+ C+G + + I E LP L+ HF+ N + + V L+ G
Sbjct: 609 LKTSKNDSVIQQLATIFTHCYGSSPIPSIPEIRKTLPARLDPHFLNNKEMSDVTFLVEG 667
>sp|Q9K6I0|MURA1_BACHD UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 OS=Bacillus
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) GN=murA1 PE=3 SV=1
Length = 440
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 17 INEQVEAETMAASAAT-------DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT 69
I++++EA T +AA +G A LR +I ++H+ ++ + IR++ +
Sbjct: 231 ISDRIEAGTFMVAAAITGGDVFIEGAVAEHLRPLIAKMHEMGVKTIEEDNGIRVIGPDEL 290
Query: 70 KPVSV 74
KPV +
Sbjct: 291 KPVDI 295
>sp|A5F6Y1|PYRF_VIBC3 Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=pyrF PE=3 SV=1
Length = 231
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V K P + +V + FG ++V+E+ ++ + DL++H I N S VK
Sbjct: 22 VDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E +
Sbjct: 82 VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESA 125
>sp|C3LNL5|PYRF_VIBCM Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1
(strain M66-2) GN=pyrF PE=3 SV=1
Length = 231
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V K P + +V + FG ++V+E+ ++ + DL++H I N S VK
Sbjct: 22 VDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E +
Sbjct: 82 VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESA 125
>sp|Q9KQT7|PYRF_VIBCH Orotidine 5'-phosphate decarboxylase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=pyrF PE=1
SV=1
Length = 231
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 66 VSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGV 125
V K P + +V + FG ++V+E+ ++ + DL++H I N S VK
Sbjct: 22 VDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELG 81
Query: 126 PNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEES 168
+ V + E++ ++E G+ +PL + V V TS E +
Sbjct: 82 VWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESA 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,663,964
Number of Sequences: 539616
Number of extensions: 3356540
Number of successful extensions: 11539
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 11424
Number of HSP's gapped (non-prelim): 58
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)