Query 025380
Match_columns 253
No_of_seqs 215 out of 1296
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:13:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0325 Predicted enzyme with 100.0 8.7E-61 1.9E-65 415.9 23.4 210 35-252 2-215 (228)
2 cd06822 PLPDE_III_YBL036c_euk 100.0 4.1E-56 8.9E-61 391.6 25.8 212 36-252 1-218 (227)
3 KOG3157 Proline synthetase co- 100.0 3.1E-53 6.7E-58 361.3 20.2 212 39-251 10-225 (244)
4 TIGR00044 pyridoxal phosphate 100.0 4.9E-46 1.1E-50 327.9 25.7 213 34-252 2-218 (229)
5 cd06824 PLPDE_III_Yggs_like Py 100.0 1.7E-40 3.6E-45 291.4 24.6 209 36-252 2-214 (224)
6 cd00635 PLPDE_III_YBL036c_like 100.0 4.7E-39 1E-43 281.4 25.4 209 37-252 2-213 (222)
7 PF01168 Ala_racemase_N: Alani 100.0 1.2E-32 2.6E-37 238.5 20.2 197 32-252 2-206 (218)
8 cd06815 PLPDE_III_AR_like_1 Ty 100.0 1.7E-31 3.7E-36 248.7 22.8 196 32-247 7-206 (353)
9 TIGR00492 alr alanine racemase 100.0 1E-28 2.3E-33 230.6 21.3 199 32-252 8-216 (367)
10 cd06821 PLPDE_III_D-TA Type II 100.0 5.8E-29 1.3E-33 231.4 16.9 203 32-252 15-229 (361)
11 cd06820 PLPDE_III_LS_D-TA_like 100.0 4.2E-28 9E-33 225.1 18.2 201 32-251 9-220 (353)
12 cd00430 PLPDE_III_AR Type III 100.0 2.8E-27 6E-32 220.6 21.5 193 32-246 7-208 (367)
13 cd07376 PLPDE_III_DSD_D-TA_lik 99.9 5.3E-27 1.2E-31 217.0 18.2 200 35-251 1-213 (345)
14 cd06817 PLPDE_III_DSD Type III 99.9 1.9E-26 4E-31 217.8 21.3 199 32-245 12-229 (389)
15 cd06818 PLPDE_III_cryptic_DSD 99.9 3.6E-26 7.7E-31 215.0 21.3 205 32-249 9-225 (382)
16 PRK13340 alanine racemase; Rev 99.9 7.1E-26 1.5E-30 214.7 22.5 199 32-251 46-255 (406)
17 cd06825 PLPDE_III_VanT Type II 99.9 2.1E-25 4.5E-30 209.1 20.9 183 32-242 7-202 (368)
18 cd06819 PLPDE_III_LS_D-TA Type 99.9 3.9E-25 8.4E-30 205.4 19.0 199 32-249 13-224 (358)
19 cd06826 PLPDE_III_AR2 Type III 99.9 1.4E-24 2.9E-29 203.3 22.2 190 32-241 7-206 (365)
20 COG0787 Alr Alanine racemase [ 99.9 1.1E-24 2.4E-29 202.9 20.9 150 32-202 10-166 (360)
21 cd06808 PLPDE_III Type III Pyr 99.9 7.3E-25 1.6E-29 187.8 18.0 196 36-251 1-205 (211)
22 cd06814 PLPDE_III_DSD_D-TA_lik 99.9 1.2E-24 2.6E-29 204.9 20.4 196 32-247 15-233 (379)
23 PRK00053 alr alanine racemase; 99.9 2.5E-24 5.5E-29 200.9 21.6 185 32-243 9-204 (363)
24 PRK03646 dadX alanine racemase 99.9 4.8E-24 1E-28 199.2 19.8 149 32-203 9-162 (355)
25 PRK11930 putative bifunctional 99.9 1E-23 2.2E-28 215.3 22.4 186 32-241 465-662 (822)
26 cd06811 PLPDE_III_yhfX_like Ty 99.9 2E-22 4.3E-27 190.0 22.5 200 32-252 34-252 (382)
27 cd06827 PLPDE_III_AR_proteobac 99.9 1.1E-22 2.5E-27 189.8 20.5 148 32-202 7-159 (354)
28 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 6.3E-22 1.4E-26 185.0 20.3 197 32-247 12-221 (374)
29 cd06810 PLPDE_III_ODC_DapDC_li 99.9 1.8E-21 4E-26 181.0 20.2 189 32-243 7-216 (368)
30 cd06813 PLPDE_III_DSD_D-TA_lik 99.9 1.5E-20 3.2E-25 177.5 20.7 194 32-245 17-245 (388)
31 cd06839 PLPDE_III_Btrk_like Ty 99.8 5.3E-19 1.2E-23 165.3 21.1 188 32-240 13-219 (382)
32 cd06828 PLPDE_III_DapDC Type I 99.8 9.2E-19 2E-23 163.1 22.4 186 32-239 9-215 (373)
33 TIGR01048 lysA diaminopimelate 99.8 1.4E-18 3E-23 164.7 21.6 186 32-239 31-237 (417)
34 cd06843 PLPDE_III_PvsE_like Ty 99.8 1.6E-18 3.4E-23 162.5 21.7 187 32-238 8-212 (377)
35 cd06842 PLPDE_III_Y4yA_like Ty 99.8 3.2E-18 6.9E-23 163.2 23.7 190 32-240 16-214 (423)
36 PLN02537 diaminopimelate decar 99.8 5.4E-18 1.2E-22 160.7 21.3 187 32-237 24-228 (410)
37 COG3616 Predicted amino acid a 99.8 7.3E-18 1.6E-22 157.5 19.2 201 32-250 24-229 (368)
38 cd06841 PLPDE_III_MccE_like Ty 99.8 8.4E-17 1.8E-21 151.0 20.7 186 32-237 13-210 (379)
39 TIGR03099 dCO2ase_PEP1 pyridox 99.8 1.3E-16 2.7E-21 150.6 20.9 188 32-240 31-235 (398)
40 cd00622 PLPDE_III_ODC Type III 99.7 2.4E-16 5.1E-21 146.8 20.2 180 32-238 8-200 (362)
41 COG3457 Predicted amino acid r 99.6 2.2E-14 4.7E-19 130.3 19.4 191 32-243 9-207 (353)
42 COG0019 LysA Diaminopimelate d 99.5 2.9E-12 6.3E-17 121.5 20.3 186 32-238 33-237 (394)
43 cd06830 PLPDE_III_ADC Type III 99.5 1.8E-11 3.9E-16 116.5 24.2 199 32-237 11-231 (409)
44 PRK11165 diaminopimelate decar 99.5 5.8E-12 1.3E-16 120.3 20.0 177 32-240 32-228 (420)
45 PF02784 Orn_Arg_deC_N: Pyrido 99.4 6E-12 1.3E-16 111.8 16.0 182 32-237 1-203 (251)
46 cd06836 PLPDE_III_ODC_DapDC_li 99.4 3.3E-11 7.1E-16 113.6 20.5 184 32-238 9-215 (379)
47 TIGR01047 nspC carboxynorsperm 99.3 3.3E-10 7.2E-15 106.9 21.1 178 32-238 9-200 (380)
48 TIGR01273 speA arginine decarb 99.3 6.9E-10 1.5E-14 110.8 24.3 200 32-237 63-283 (624)
49 cd06831 PLPDE_III_ODC_like_AZI 99.3 2E-10 4.3E-15 109.0 19.5 179 32-238 19-211 (394)
50 PRK05354 arginine decarboxylas 99.3 6E-10 1.3E-14 111.3 23.6 199 32-237 70-290 (634)
51 cd06840 PLPDE_III_Bif_AspK_Dap 99.2 4.8E-09 1E-13 98.6 21.2 166 32-223 18-201 (368)
52 PLN02439 arginine decarboxylas 99.2 8.4E-09 1.8E-13 101.9 23.6 195 33-236 6-226 (559)
53 PRK08961 bifunctional aspartat 99.1 1.3E-08 2.7E-13 105.4 20.9 177 32-237 509-703 (861)
54 cd06829 PLPDE_III_CANSDC Type 99.0 3.7E-08 7.9E-13 91.8 19.4 144 32-202 7-164 (346)
55 KOG0622 Ornithine decarboxylas 98.8 6E-07 1.3E-11 84.7 17.3 186 32-244 62-262 (448)
56 COG1166 SpeA Arginine decarbox 95.0 2.7 5.9E-05 42.0 17.9 196 34-237 88-306 (652)
57 PRK00694 4-hydroxy-3-methylbut 87.1 4.2 9.1E-05 40.8 9.3 184 61-252 33-261 (606)
58 COG0821 gcpE 1-hydroxy-2-methy 86.8 7.3 0.00016 36.7 10.2 182 58-252 21-222 (361)
59 TIGR00612 ispG_gcpE 1-hydroxy- 86.4 9.9 0.00021 35.8 10.9 182 58-252 19-220 (346)
60 PRK02048 4-hydroxy-3-methylbut 82.1 5.1 0.00011 40.4 7.5 184 58-252 26-257 (611)
61 COG0386 BtuE Glutathione perox 81.2 3 6.4E-05 35.1 4.7 38 156-198 26-65 (162)
62 PRK00366 ispG 4-hydroxy-3-meth 78.0 9.7 0.00021 36.1 7.5 182 58-252 27-229 (360)
63 PLN02925 4-hydroxy-3-methylbut 76.1 10 0.00022 39.0 7.6 167 75-252 116-326 (733)
64 cd06533 Glyco_transf_WecG_TagA 69.0 43 0.00093 27.9 8.8 55 129-196 24-78 (171)
65 TIGR03693 ocin_ThiF_like putat 65.0 84 0.0018 32.1 11.2 117 32-152 102-232 (637)
66 TIGR02356 adenyl_thiF thiazole 57.2 62 0.0013 27.7 7.8 64 86-152 72-137 (202)
67 TIGR00696 wecB_tagA_cpsF bacte 56.7 25 0.00054 29.9 5.1 58 130-202 27-84 (177)
68 TIGR02066 dsrB sulfite reducta 53.8 91 0.002 29.3 8.9 48 134-185 40-87 (341)
69 TIGR03217 4OH_2_O_val_ald 4-hy 52.1 1.8E+02 0.004 27.1 10.6 126 111-251 86-215 (333)
70 PRK07428 nicotinate-nucleotide 45.6 1.7E+02 0.0037 26.9 9.1 59 65-123 199-262 (288)
71 PRK05690 molybdopterin biosynt 43.5 1.1E+02 0.0024 27.0 7.4 65 85-152 82-148 (245)
72 COG4130 Predicted sugar epimer 42.3 61 0.0013 29.0 5.3 69 111-185 47-128 (272)
73 PF01729 QRPTase_C: Quinolinat 40.2 1.1E+02 0.0024 25.7 6.6 68 66-137 84-157 (169)
74 PRK14989 nitrite reductase sub 39.3 62 0.0013 34.2 5.8 68 108-185 554-621 (847)
75 COG2100 Predicted Fe-S oxidore 39.1 1.3E+02 0.0028 28.7 7.2 63 132-202 139-201 (414)
76 PRK08195 4-hyroxy-2-oxovalerat 38.4 3.4E+02 0.0073 25.4 11.0 126 111-251 87-216 (337)
77 COG3412 Uncharacterized protei 38.4 2.1E+02 0.0046 23.3 7.4 69 128-202 3-71 (129)
78 cd01483 E1_enzyme_family Super 38.3 2E+02 0.0043 22.7 7.8 66 84-152 48-115 (143)
79 PF04551 GcpE: GcpE protein; 38.0 61 0.0013 30.8 5.0 182 58-252 16-229 (359)
80 COG3454 Metal-dependent hydrol 36.0 73 0.0016 30.2 5.1 37 156-202 132-168 (377)
81 TIGR02374 nitri_red_nirB nitri 35.4 1.4E+02 0.003 31.2 7.6 49 133-185 563-611 (785)
82 PF03460 NIR_SIR_ferr: Nitrite 34.8 57 0.0012 22.6 3.4 46 136-185 22-67 (69)
83 PF00682 HMGL-like: HMGL-like 32.5 21 0.00044 31.0 0.9 113 125-251 81-208 (237)
84 TIGR03619 F420_Rv2161c probabl 32.3 93 0.002 27.5 5.1 46 41-86 191-242 (246)
85 TIGR02355 moeB molybdopterin s 31.7 1.5E+02 0.0034 26.1 6.4 66 84-152 73-140 (240)
86 PRK11377 dihydroxyacetone kina 31.5 2.6E+02 0.0056 27.6 8.4 70 128-201 2-73 (473)
87 cd01572 QPRTase Quinolinate ph 31.2 4E+02 0.0086 24.1 9.3 55 69-123 189-245 (268)
88 PF03808 Glyco_tran_WecB: Glyc 30.4 1.2E+02 0.0026 25.2 5.2 58 128-198 25-82 (172)
89 cd07938 DRE_TIM_HMGL 3-hydroxy 29.9 4.1E+02 0.009 23.9 9.5 43 140-185 116-159 (274)
90 PF03514 GRAS: GRAS domain fam 29.7 1.5E+02 0.0033 28.0 6.4 78 128-220 91-171 (374)
91 PLN02489 homocysteine S-methyl 28.2 2.8E+02 0.0061 25.8 7.8 64 131-199 186-250 (335)
92 cd00755 YgdL_like Family of ac 27.6 3.4E+02 0.0074 23.9 7.8 67 84-152 60-128 (231)
93 KOG1936 Histidyl-tRNA syntheta 27.5 67 0.0015 31.6 3.4 103 130-239 186-327 (518)
94 cd00757 ThiF_MoeB_HesA_family 27.3 2E+02 0.0043 24.9 6.3 65 85-152 71-137 (228)
95 cd02429 PTH2_like Peptidyl-tRN 26.5 2.1E+02 0.0045 22.7 5.6 46 128-175 56-101 (116)
96 PRK09567 nirA ferredoxin-nitri 26.0 5.8E+02 0.013 25.8 10.0 96 136-240 387-490 (593)
97 PLN02460 indole-3-glycerol-pho 25.4 1.9E+02 0.0042 27.3 6.1 99 61-164 119-240 (338)
98 PRK07877 hypothetical protein; 25.4 6.3E+02 0.014 26.4 10.3 89 59-152 108-222 (722)
99 cd01573 modD_like ModD; Quinol 24.9 1.5E+02 0.0033 26.8 5.2 72 63-138 185-261 (272)
100 PRK05742 nicotinate-nucleotide 24.6 4.6E+02 0.01 23.9 8.3 59 64-123 192-252 (277)
101 PRK08644 thiamine biosynthesis 23.8 2.5E+02 0.0054 24.2 6.2 64 86-152 78-144 (212)
102 PRK07534 methionine synthase I 23.6 3.7E+02 0.008 25.1 7.6 63 130-198 149-212 (336)
103 COG4573 GatZ Predicted tagatos 23.4 3.2E+02 0.007 26.1 7.0 86 154-241 41-135 (426)
104 cd01485 E1-1_like Ubiquitin ac 22.7 3.2E+02 0.0069 23.2 6.6 64 86-152 72-139 (198)
105 PRK08072 nicotinate-nucleotide 22.7 5.9E+02 0.013 23.2 9.7 70 63-137 190-262 (277)
106 cd01487 E1_ThiF_like E1_ThiF_l 22.6 3.2E+02 0.007 22.7 6.5 66 84-152 47-115 (174)
107 KOG0187 40S ribosomal protein 21.2 38 0.00082 27.4 0.4 14 6-19 74-87 (134)
108 COG0134 TrpC Indole-3-glycerol 20.9 3.8E+02 0.0082 24.3 6.8 100 59-164 44-166 (254)
109 PRK03692 putative UDP-N-acetyl 20.7 2E+02 0.0043 25.7 5.0 24 173-197 114-137 (243)
110 PF00899 ThiF: ThiF family; I 20.6 2.9E+02 0.0064 21.5 5.6 65 85-152 52-118 (135)
No 1
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=100.00 E-value=8.7e-61 Score=415.92 Aligned_cols=210 Identities=46% Similarity=0.646 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC--CceEEeeCC
Q 025380 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGN 112 (253)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~--~i~~h~IG~ 112 (253)
.|.+|+..|+++|.++|.++||++.+|+|+||||+++++.|+.++++|++.|||||+||+..|.+.+++ +|.|||||+
T Consensus 2 ~i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~ 81 (228)
T COG0325 2 DIKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGP 81 (228)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCHHHHHHHHHcCChhhcchHHHHHHHHHHhcCcCCCeEEEEech
Confidence 378999999999999999999999999999999999999999999999999999999999999999876 399999999
Q ss_pred CCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCee
Q 025380 113 LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLE 192 (253)
Q Consensus 113 lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~ 192 (253)
||+||+++++ ++++++||||+++.|.+|++++...++ +++|+||||+++|.+|+|++|+++..+++.+. .+|+|+
T Consensus 82 LQsNK~k~v~---~~~~~ihSlDr~klA~~l~kra~~~~~-~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~-~~~~L~ 156 (228)
T COG0325 82 LQSNKVKLVA---ENFDWIHSLDRLKLAKELNKRALELPK-PLNVLIQVNISGEESKSGVPPEELDELAQEVQ-ELPNLE 156 (228)
T ss_pred hhhhHHHHHH---hhcceeeecCHHHHHHHHHHHHHhCCC-CceEEEEEecCCccccCCCCHHHHHHHHHHHH-hCCCCe
Confidence 9999999999 579999999999999999999988886 99999999999999999999999999999998 999999
Q ss_pred EeEEeeecCCC--CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 193 FCGLMTIGMPD--YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 193 l~GLmth~a~~--~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
++|||||+|.+ ++..+..|+.|+++++.+...+. + .++||||||+||++||++|||+
T Consensus 157 l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~-~--~~~LSMGMS~D~e~AI~~GaT~ 215 (228)
T COG0325 157 LRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYP-P--IDELSMGMSNDYEIAIAEGATM 215 (228)
T ss_pred EeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-C--CCeecCcCcccHHHHHHcCCCE
Confidence 99999999984 44678999999999999998754 3 4899999999999999999997
No 2
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=100.00 E-value=4.1e-56 Score=391.62 Aligned_cols=212 Identities=56% Similarity=0.900 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCCceEEeeCCCCc
Q 025380 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQS 115 (253)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~IG~lq~ 115 (253)
+++|+..|+++|.++|.+ |.|.+|+|+||||+|+.+.|+.++++|++.|||||+||+..|...++.+|.|||||+||+
T Consensus 1 ~~~~l~~i~~~i~~a~~~--r~~~~v~LvaVsK~~~~~~i~~~~~~G~~~fGENrvQe~~~K~~~l~~~i~wHfIG~LQ~ 78 (227)
T cd06822 1 LIANLKRIRQAVKRASKK--LPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGHLQS 78 (227)
T ss_pred ChHHHHHHHHHHHHHHHh--CCCCCcEEEEEECCCCHHHHHHHHHcCCccccCcHHHHHHHHHHhccCCceEEEECCCch
Confidence 358999999999999887 778889999999999999999999999999999999999999998876799999999999
Q ss_pred ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEEEeCCCCCCccCCChhhHHHHHHHH-HhcCCCee
Q 025380 116 NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETM--GRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV-SQNCPNLE 192 (253)
Q Consensus 116 nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~--~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i-~~~~~~L~ 192 (253)
||+++++ .+++++++|||||+++++.|++++.+. ++ +++|+||||+|+|.+|+||+|+++.++++.| . .+|||+
T Consensus 79 NK~k~i~-~~~~~~~ihsvDs~~la~~L~~~a~~~~~~~-~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~-~~~~L~ 155 (227)
T cd06822 79 NKVKKLL-KVPNLYMVETVDSEKLADKLNKAWEKLGERE-PLKVMVQVNTSGEESKSGLEPSEAVELVKHIIE-ECPNLK 155 (227)
T ss_pred hhHHHHh-ccccccEEEecCCHHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHh-hCCCce
Confidence 9999996 114799999999999999999999988 87 9999999999999999999999999999999 4 799999
Q ss_pred EeEEeeecCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 193 FCGLMTIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 193 l~GLmth~a~~~~---~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
|+|||||+|++++ ..+++|+.|+++++.|++.+|++....+||||||+||+.||++|||+
T Consensus 156 l~GLMt~~~~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D~~~Ai~~GsT~ 218 (227)
T cd06822 156 FSGLMTIGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSADFEHAIEMGSTN 218 (227)
T ss_pred EEEEEeeCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHhHHHHHHcCCCE
Confidence 9999999999544 36799999999999999865554223799999999999999999986
No 3
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=100.00 E-value=3.1e-53 Score=361.31 Aligned_cols=212 Identities=57% Similarity=0.900 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCCceEEeeCCCCcccH
Q 025380 39 ALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKV 118 (253)
Q Consensus 39 Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~IG~lq~nk~ 118 (253)
-|+.+..++++++.+.+|....++|+||||++|++.|.++|++|+++|||||+||.++|...++++|.|||||++|+||+
T Consensus 10 ~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~i~~~Y~~GqR~FGENYVQEl~eKap~lp~DI~WHFIG~lQsnK~ 89 (244)
T KOG3157|consen 10 ALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPASLIIEAYDAGQRHFGENYVQELIEKAPLLPDDIKWHFIGHLQSNKC 89 (244)
T ss_pred HHHHHHHHHHHHHHhccccccceEEEEeecCCcHHHHHHHHHcCcChhhHHHHHHHHHhcccCcccceeeeechhhhccc
Confidence 35566777777888888888889999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEe
Q 025380 119 KPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLM 197 (253)
Q Consensus 119 ~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~-~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLm 197 (253)
++++ .++++..+++||+.+.|..|++...+.+. .|+.|+|||||++|++|+|+.|.++.++++++...||+|+|.|||
T Consensus 90 kkl~-svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTSGEd~K~Giepse~~~l~~~i~~~c~nL~f~GlM 168 (244)
T KOG3157|consen 90 KKLL-SVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTSGEDSKSGIEPSEAPELAEHIKSECKNLKFSGLM 168 (244)
T ss_pred chhc-cCCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecCCccccCCCChhhhHHHHHHHHHhCCcceeeeeE
Confidence 9999 58888999999999999999999988773 399999999999999999999999999999997459999999999
Q ss_pred eecCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCC
Q 025380 198 TIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLL 251 (253)
Q Consensus 198 th~a~~~~---~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~ 251 (253)
||++.+.+ .-.+.|..|.++++.+.+.+|++.+..+||||||+||+.||+.||+
T Consensus 169 TIGs~~~s~ss~eNpDF~~L~~~r~~ic~~lg~~~dq~eLSMGMS~DF~~AIe~Gst 225 (244)
T KOG3157|consen 169 TIGSFDNSHSSGENPDFQVLVKLRESICKKLGIPADQVELSMGMSADFLLAIEQGST 225 (244)
T ss_pred EeccccccccCCCCccHHHHHHHHHHHHHHhCCChHHhhhhcccchhHHHHHHhCCc
Confidence 99998654 3357899999999999999999876679999999999999999997
No 4
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=100.00 E-value=4.9e-46 Score=327.86 Aligned_cols=213 Identities=42% Similarity=0.624 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC--CceEEeeC
Q 025380 34 GVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIG 111 (253)
Q Consensus 34 ~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~--~i~~h~IG 111 (253)
..+.+|+..|+++|.++|++++|+|.+++|+||||+.+.+.|..++++|+++||||++|||+.|...++. .+.|||||
T Consensus 2 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~~~~i~~l~~~G~~~fg~~~~~Ea~~k~~~lr~~~~~~~~~ig 81 (229)
T TIGR00044 2 SDIIHYLEDIKTKIEAANTHVNRNPSKVKLLAVSKTKPASAIQIAYDAGQRAFGENYVQELVEKIKLLEDLGKLEWHFIG 81 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCccccEEcHHHHHHHHHHhcccCCceEEEEC
Confidence 3578999999999999999999999999999999999988888888999999999999999997766543 47999999
Q ss_pred CCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCe
Q 025380 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNL 191 (253)
Q Consensus 112 ~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L 191 (253)
++|+|+...++ ..++++++|||.++++.|++.+.+.++ +++||||||||++|+|+||.|+++.+++..+. .+|+|
T Consensus 82 ~~q~~~~~~~~---~~~~l~~~vds~~~~~~l~~~a~~~~~-~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~-~~~~l 156 (229)
T TIGR00044 82 PLQSNKDRLVV---ENFDWVHTIDSLKIAKKLNEQREKLQP-PLNVLLQINISDEESKSGIQPEELLELAIQIE-ELKHL 156 (229)
T ss_pred CCcchHHHHHh---hhcCEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCCCHHHHHHHHHHHh-cCCCC
Confidence 99999998777 468999999999999999999998887 99999999998779999999999999999998 89999
Q ss_pred eEeEEeeecCCCC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 192 EFCGLMTIGMPDY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 192 ~l~GLmth~a~~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
++.|||||+++.. +..++.|..+.++++.|+.. ++.....+||||||+||+.|+++|+|+
T Consensus 157 ~l~Gl~th~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~lS~G~t~~~~~a~~~g~te 218 (229)
T TIGR00044 157 KLRGLMTIGAPTDSHEDQEENFRFMKLLFWQIKQD-SPFGTIDTLSMGMSDDFEEAIAAGATM 218 (229)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhh-cCCCCCCEEeeeCcHhHHHHHHCCCCE
Confidence 9999999999833 45678999999999999875 331123799999999999999999985
No 5
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=100.00 E-value=1.7e-40 Score=291.39 Aligned_cols=209 Identities=47% Similarity=0.653 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC--CceEEeeCCC
Q 025380 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNL 113 (253)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~--~i~~h~IG~l 113 (253)
+.+|++.|+++|..+|...+|+|.+++|+||||+||+..|..++++|+++||||+++||++|...+.. .+.|||||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~~~G~~~fgva~~~Ea~~k~~~Lr~~g~~~~~~lg~~ 81 (224)
T cd06824 2 IAENLAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPI 81 (224)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCcChHHHHHHHHHHhccCCCeeEEEEcCc
Confidence 56899999999999999999999889999999999999997778999999999999999986655543 4899999999
Q ss_pred CcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeE
Q 025380 114 QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEF 193 (253)
Q Consensus 114 q~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l 193 (253)
|+++....+ ..++++++|||.++++.|++.+.+.++ +++|||+||||+.|+|+||+|+++.++++.+. .+|+|++
T Consensus 82 ~~~~~~~~~---~~~~~~~~I~s~~~~~~l~~~a~~~g~-~~~v~l~id~~~Gm~R~Gi~~~~~~~~~~~i~-~~~~l~l 156 (224)
T cd06824 82 QSNKTKLIA---ENFDWVHSVDRLKIAKRLNDQRPAGLP-PLNVCIQVNISGEDSKSGVAPEDAAELAEAIS-QLPNLRL 156 (224)
T ss_pred hhhhHHHHH---hhCCEEEecCCHHHHHHHHHHHHhcCC-CCcEEEEEEcCCCCCCCCCCHHHHHHHHHHHh-cCCCCcE
Confidence 998866665 248999999999999999999988887 99999999996669999999998999999997 8999999
Q ss_pred eEEeeecCCCC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 194 CGLMTIGMPDY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 194 ~GLmth~a~~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.|||||+++.. ....+.|..+.++.+.++.. ++.+ ..+|||||+||..+.+.|++|
T Consensus 157 ~Gl~tH~a~~~~~~~q~~~f~~~~~~~~~l~~~-~~~~--~~is~gnS~~~~~~~~~~~~~ 214 (224)
T cd06824 157 RGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQ-YPDL--DTLSMGMSGDLEAAIAAGSTM 214 (224)
T ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHHHHHhh-CCCC--CEEeCcCcHhHHHHHHcCCCE
Confidence 99999999733 23457899998888888753 5543 689999999999999988765
No 6
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=100.00 E-value=4.7e-39 Score=281.39 Aligned_cols=209 Identities=48% Similarity=0.699 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCC-ceEEeeCCCCc
Q 025380 37 ATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDD-LEWHFIGNLQS 115 (253)
Q Consensus 37 ~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~~-i~~h~IG~lq~ 115 (253)
++|+..++.+|+.+++.++|.+.+++++||+|+||+..+..++++|+++|||++++||+.+|+.+..+ +.|+++|++++
T Consensus 2 ~~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~~~ 81 (222)
T cd00635 2 AENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHLQT 81 (222)
T ss_pred hHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHHHcCCcccCCCcHHHHHHHHHHccCCCceEEEECcccc
Confidence 45556666666655566665567789999999999998877788999999999999999999986553 78999999999
Q ss_pred ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeE
Q 025380 116 NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCG 195 (253)
Q Consensus 116 nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~G 195 (253)
+++..++ +.++++++|||.++++.|++.+.+.++ +++|||+||||++|+|+||+|+++.++++.+. .+|+|++.|
T Consensus 82 ~~~~~~~---~~~~~~~~v~s~~~l~~l~~~a~~~~~-~~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~-~~~~l~~~G 156 (222)
T cd00635 82 NKVKYAV---RLFDLIHSVDSLKLAEELNKRAEKEGR-VLDVLVQVNIGGEESKSGVAPEELEELLEEIA-ALPNLRIRG 156 (222)
T ss_pred ccHHHHH---hhCCEEEEcCCHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCCCCCCHHHHHHHHHHHH-cCCCCcEEE
Confidence 9999998 346899999999999999999988887 99999999999666999999999999999998 899999999
Q ss_pred EeeecCCC--CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 196 LMTIGMPD--YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 196 Lmth~a~~--~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
+|||+++. ++...+.|..+.++.+.+++..|+.+ .++|+|||+||+.|++.|+|.
T Consensus 157 i~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~is~G~t~~~~~~~~~~~~~ 213 (222)
T cd00635 157 LMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL--KELSMGMSGDFEIAIEEGATL 213 (222)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC--CEEECcccHhHHHHHHcCCCE
Confidence 99999873 34567889999999999998766765 899999999999999999874
No 7
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=100.00 E-value=1.2e-32 Score=238.50 Aligned_cols=197 Identities=25% Similarity=0.341 Sum_probs=165.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCCceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~ 107 (253)
|+++|++|++.+++.+ ++..+|+||+|+ |+...+......|++.|||++++||+.++..+ .+|
T Consensus 2 dl~al~~Ni~~~~~~~----------~~~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g-~~i-- 68 (218)
T PF01168_consen 2 DLDALRHNIRKIRQRA----------GPGTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG-API-- 68 (218)
T ss_dssp EHHHHHHHHHHHHHHH----------CTTSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT-SEE--
T ss_pred CHHHHHHHHHHHHHHc----------CCCCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC-Cce--
Confidence 6899999999999988 345679999998 44444444333379999999999999999988 443
Q ss_pred EeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhc
Q 025380 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQN 187 (253)
Q Consensus 108 h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~ 187 (253)
+++|+++++++..+++ .+++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.|+++.++++.+. .
T Consensus 69 l~l~~~~~~~~~~~~~----~~~~~~v~s~~~~~~l~~~~~~~~~-~~~v~l~vdtG--~~R~G~~~~~~~~l~~~i~-~ 140 (218)
T PF01168_consen 69 LVLGPIPPEELEELVE----YNIIPTVDSLEQLEALSKAAKKQGK-PLKVHLKVDTG--MGRLGVRPEELEELAEAIK-A 140 (218)
T ss_dssp EEESESTGGGHHHHHH----TTEEEEE-SHHHHHHHHHHHHHHTS-TEEEEEEBESS--SSSSSBECHHHHHHHHHHH-H
T ss_pred EEEcCCChhhHHHHhh----CcEEEEEchhhHHHHHHHHHHHcCC-ceEEEEeeccc--ccccCCCHHHHHHHHHHHh-c
Confidence 5667789999999994 4999999999999999999999897 99999999999 9999999999999999998 8
Q ss_pred CCCeeEeEEeeecCCCC--CCcH-HHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHH-HcCCCC
Q 025380 188 CPNLEFCGLMTIGMPDY--TSTP-ENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV-RNTLLL 252 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~--~~~~-~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai-~~Gs~~ 252 (253)
+|+|++.|||||+++.. +... +.|..+.++.+.+++. +++. ..+|||||++|..+. ..|.++
T Consensus 141 ~~~l~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~-~~~~--~~~s~g~S~~~~~~~~~~~~~~ 206 (218)
T PF01168_consen 141 LPNLRLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKA-GIPP--PIVSMGNSAAFLLAPAHEGITM 206 (218)
T ss_dssp TTTEEEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHT-TTTC--SEEEEEBHHHHHHHGGTTTTSE
T ss_pred CCCceEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhc-cCCC--ceecCCCCcchhhcccccCCcE
Confidence 99999999999999843 3233 4899999999999874 5554 799999999999998 766664
No 8
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=100.00 E-value=1.7e-31 Score=248.72 Aligned_cols=196 Identities=17% Similarity=0.191 Sum_probs=166.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc-CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT-KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~-h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~ 109 (253)
|+++|++|++.+++.+. +++++|+||+|+ ||+.++ +.++++|+++|||++++||+.+|+.+.. ..|++
T Consensus 7 dl~al~~Ni~~i~~~~~---------~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~-~~ill 76 (353)
T cd06815 7 NLSKIRHNAKVLVELCK---------SRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGIS-GPKML 76 (353)
T ss_pred eHHHHHHHHHHHHHHHh---------hcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCC-CCEEE
Confidence 89999999999999872 256899999999 598776 5577899999999999999999986532 25688
Q ss_pred eCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC
Q 025380 110 IGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCP 189 (253)
Q Consensus 110 IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~ 189 (253)
+|..++++++.+++ ++++.+|+|.++++.|++.+.+.++ +++|||+|||| |+|+||.|+++.++++.+. .+|
T Consensus 77 lg~~~~~~~~~~~~----~~~~~~i~s~~~~~~l~~~a~~~~~-~~~vhlkvDtG--m~R~G~~~~e~~~~~~~i~-~~~ 148 (353)
T cd06815 77 LRIPMLSEVEDVVK----YADISLNSELETIKALSEEAKKQGK-IHKIILMVDLG--DLREGVLPEDLLDFVEEIL-KLP 148 (353)
T ss_pred ECCCCHHHHHHHHh----hcceeccChHHHHHHHHHHHHHcCC-ccceEEEEecC--CCccccCHHHHHHHHHHHh-CCC
Confidence 89999999999983 6778889999999999999988887 99999999999 9999999999999999997 899
Q ss_pred CeeEeEEeeecCCCC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHH
Q 025380 190 NLEFCGLMTIGMPDY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVR 247 (253)
Q Consensus 190 ~L~l~GLmth~a~~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~ 247 (253)
+|+++||||||+... ......|..+.++.+.+++..|+.. ..+|||||+++..+.+
T Consensus 149 ~l~~~Gi~tH~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~S~~~~~~~~ 206 (353)
T cd06815 149 GIELVGIGTNLGCYGGVLPTEENMGKLVELKEEIEKEFGIKL--PIISGGNSASLPLLLK 206 (353)
T ss_pred CcEEEecccCccccCCCCCCHHHHHHHHHHHHHHHHhhCCCC--CEEeccchHHHHHHHh
Confidence 999999999998722 2344668888888888876335543 6899999999998854
No 9
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.96 E-value=1e-28 Score=230.63 Aligned_cols=199 Identities=14% Similarity=0.171 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~ 106 (253)
|+++|++|++.+++.+ +.++++++|+|+ ||...+ +.+.++|+++|+|++++||..++..+.+. .
T Consensus 8 dl~~l~~N~~~i~~~~----------~~~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~-~ 76 (367)
T TIGR00492 8 DLAALKHNLSAIRNHI----------GPKSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITA-P 76 (367)
T ss_pred EHHHHHHHHHHHHHhc----------CCCCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCC-C
Confidence 8999999999999987 345689999997 999887 55678999999999999999999976442 3
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~ 186 (253)
|+++|+.++.++..+++ ++++++|||+++++.|++.+.+.++ +++|||+|||| |+|+||.|+++.++++.+.
T Consensus 77 ilvl~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~l~VdtG--m~R~Gi~~~e~~~~~~~i~- 148 (367)
T TIGR00492 77 ILLLGGFFAEDLKILAA----WDLTTTVHSVEQLQALEEALLKEPK-RLKVHLKIDTG--MNRLGVKPDEAALFVQKLR- 148 (367)
T ss_pred EEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHHH-
Confidence 46678877777777773 7899999999999999999988887 89999999999 9999999999988888887
Q ss_pred cCCCee-EeEEeeecCCCC--C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 187 NCPNLE-FCGLMTIGMPDY--T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 187 ~~~~L~-l~GLmth~a~~~--~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+|+|+ +.|||||+++.. + ..++.|+.+.++.+.+++. |++. ..+|+|+|+++..+.+.+.+|
T Consensus 149 ~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~-g~~~--~~~~~~nS~~~~~~~~~~~d~ 216 (367)
T TIGR00492 149 QLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQ-NIEP--PFRHIANSAAILNWPESHFDM 216 (367)
T ss_pred hCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhc-CCCC--CcEEccCCHHHhCCccccCCe
Confidence 899999 999999998732 2 3467788888888888763 6554 689999999998776665543
No 10
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.96 E-value=5.8e-29 Score=231.43 Aligned_cols=203 Identities=23% Similarity=0.276 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCC--ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDD--LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~--i~~h 108 (253)
|+++|++|++.+++.+. ...++++|+|+|++..+ +.++++|+.+|+|++++||..++..+..+ +.|+
T Consensus 15 d~~~l~~Ni~~~~~~~~----------~~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ill~~~ 84 (361)
T cd06821 15 YPDRIEENIRRMIRMAG----------DPQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAPDVLLAYP 84 (361)
T ss_pred eHHHHHHHHHHHHHHHh----------cCCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCCeEEEeCC
Confidence 99999999999999882 34579999999999887 55678999999999999999999875444 4576
Q ss_pred eeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChh-hHHHHHHHHHhc
Q 025380 109 FIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS-GCLELVKHVSQN 187 (253)
Q Consensus 109 ~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~-e~~~l~~~i~~~ 187 (253)
++|+.+.+.+..+. ..+..+++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.++ ++.++++.+. +
T Consensus 85 ~~~~~~~~~~~l~~-~~~~~~~~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~Vd~G--~~R~Gv~~~~~~~~l~~~i~-~ 159 (361)
T cd06821 85 LVGPNIERFLELAK-KYPGTRFSALVDDLEAAEALSAAAGSAGL-TLSVLLDVNTG--MNRTGIAPGEDAEELYRAIA-T 159 (361)
T ss_pred CCHHHHHHHHHHHh-hCCCCeEEEEECCHHHHHHHHHHHHHcCC-eEEEEEEeCCC--CCcCCCCChHHHHHHHHHHh-h
Confidence 66654333333333 11124689999999999999999998887 99999999999 999999987 7999999997 8
Q ss_pred CCCeeEeEEeeecCCCC--C------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 188 CPNLEFCGLMTIGMPDY--T------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~--~------~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
+|+|++.|||+|.++.+ + ..++.|+.+.++.+.+++. |+++ ..+|+|||++|..+.+.|.++
T Consensus 160 ~~~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~v~~GgS~~~~~~~~~~~~~ 229 (361)
T cd06821 160 LPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAA-GLPV--PELVAGGTPSFPFHAAYTDVE 229 (361)
T ss_pred CCCceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC--CEEEECCCcchhhhccCCCcE
Confidence 99999999999887632 1 2357788888888888863 6554 789999999999998877664
No 11
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.96 E-value=4.2e-28 Score=225.06 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=169.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCC--ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDD--LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~--i~~h 108 (253)
|+++|++|++.+++.+. +.++++++|+|+|+...+ +.+.++|++.|++++++||..++..+..+ +.|+
T Consensus 9 d~~~l~~Ni~~~~~~~~---------~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~i~i~~~ 79 (353)
T cd06820 9 DLDRLERNIARMQAYAD---------AHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLSDIFIAYP 79 (353)
T ss_pred eHHHHHHHHHHHHHHHH---------HcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCCeEEEECC
Confidence 89999999999999873 245789999999999887 55678999999999999999998875444 5667
Q ss_pred eeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHhc
Q 025380 109 FIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQN 187 (253)
Q Consensus 109 ~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~i~~~ 187 (253)
++|+.+.+++..++ +..+++.+|||+++++.|++.+.+.++ +++|+|+||+| ++|+|+.| +++.++++.+. +
T Consensus 80 ~~~~~~~~~l~~l~---~~~~~~~~vds~~~l~~L~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~ 152 (353)
T cd06820 80 IVGRQKLERLRALA---ERVTLSVGVDSAEVARGLAEVAEGAGR-PLEVLVEVDSG--MNRCGVQTPEDAVALARAIA-S 152 (353)
T ss_pred cCCHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEECCC--CCcCCCCChHHHHHHHHHHH-h
Confidence 66766666666666 457899999999999999999998887 99999999999 99999998 88999999998 8
Q ss_pred CCCeeEeEEeeecCCCCC------CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHH-HcCCC
Q 025380 188 CPNLEFCGLMTIGMPDYT------STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV-RNTLL 251 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~~------~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai-~~Gs~ 251 (253)
+|+|++.|||||+++.++ ..++.+..+.++.+.+++ .|+.. ..+|+|+|+++..+- ..|.+
T Consensus 153 ~~~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vs~Ggs~t~~~~~~~~~~~ 220 (353)
T cd06820 153 APGLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEE-AGLEP--PVVSGGSTPTLWRSHEVPGIT 220 (353)
T ss_pred CCCcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCcChhhhhhhccCCce
Confidence 999999999999998432 245678888999998887 46654 899999999999984 46654
No 12
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.96 E-value=2.8e-27 Score=220.60 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~ 106 (253)
|+++|++|++.+++.+ ++++++++|+|+ ||...| +.+.++|++.|+|++++||..++..+.+. .
T Consensus 7 d~~~i~~N~~~l~~~~----------~~~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~-~ 75 (367)
T cd00430 7 DLDALRHNLRVIRRLL----------GPGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITA-P 75 (367)
T ss_pred EHHHHHHHHHHHHHhC----------CCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCC-C
Confidence 8999999999999987 346899999998 889887 55678999999999999999999886543 4
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~ 186 (253)
|+++|+.++++++.+++ .+++++|||+++++.|++.+.+.++ +++|||+|||| |+|+||+++++.++++.+.
T Consensus 76 i~~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~v~l~vdtG--~~R~G~~~~e~~~~~~~i~- 147 (367)
T cd00430 76 ILVLGGTPPEEAEEAIE----YDLTPTVSSLEQAEALSAAAARLGK-TLKVHLKIDTG--MGRLGFRPEEAEELLEALK- 147 (367)
T ss_pred EEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEcCC--CCCCCCCHHHHHHHHHHHH-
Confidence 57788888999999984 6889999999999999999988887 99999999999 8999999999999999998
Q ss_pred cCCCeeEeEEeeecCCCCC----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHH
Q 025380 187 NCPNLEFCGLMTIGMPDYT----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAV 246 (253)
Q Consensus 187 ~~~~L~l~GLmth~a~~~~----~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai 246 (253)
.+++|++.|||||++.... .....++.+.++.+.+++ .|++. ..+|+|.|+.+...-
T Consensus 148 ~~~~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~~--~~v~~g~s~~~~~~~ 208 (367)
T cd00430 148 ALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEE-AGIPP--PLKHLANSAAILRFP 208 (367)
T ss_pred hCCCceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CcEEccCCHHHhCCc
Confidence 8999999999999987321 234667777788888876 36554 689999999886543
No 13
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.95 E-value=5.3e-27 Score=217.04 Aligned_cols=200 Identities=19% Similarity=0.235 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEeeCCC
Q 025380 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNL 113 (253)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~IG~l 113 (253)
+|++|++.+++.+. +.+++++||+|+|++..+ +.+.++|++.|+|++++||+.++..+..+| .+.|++
T Consensus 1 ~l~~Ni~~~~~~~~---------~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~~~I--li~~~~ 69 (345)
T cd07376 1 ALEANISRMAARAR---------ASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVKDI--LMAYPL 69 (345)
T ss_pred ChHHHHHHHHHHHH---------HcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCCCeE--EEECCc
Confidence 47899999998873 246789999999999887 556789999999999999999998765555 344677
Q ss_pred C-cccHHHHhhCCC-CccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHH--HHHhcCC
Q 025380 114 Q-SNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVK--HVSQNCP 189 (253)
Q Consensus 114 q-~nk~~~~~~~~~-~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~--~i~~~~~ 189 (253)
+ +++++.+++... ..++..+|||.++++.|++.+.+.++ +++|||+|||| |+|+||+|++...+.. .+. ++|
T Consensus 70 ~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~ID~G--~~R~Gv~~~~~~~l~~~~~i~-~~~ 145 (345)
T cd07376 70 VGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGV-RLRVMLEVDVG--GHRSGVRPEEAAALALADAVQ-ASP 145 (345)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-eeEEEEEeCCC--CCcCCCCCcHHHHHHHHHHhc-cCC
Confidence 6 677777753112 25789999999999999999988887 99999999999 9999999865444333 334 689
Q ss_pred CeeEeEEeeecCCCCCC------cHHHHHHHHHHHHHHHHH-hCCCCCCCeeeccCcchHHHHH-HcCCC
Q 025380 190 NLEFCGLMTIGMPDYTS------TPENFKTLAKCRSEVCKA-LGIPEEQCDLSMGMSGDFELAV-RNTLL 251 (253)
Q Consensus 190 ~L~l~GLmth~a~~~~~------~~~~F~~l~~~~~~l~~~-~~~~~~~~~LSmGMS~D~~~Ai-~~Gs~ 251 (253)
+|++.|||||+++.++. ....+..+..+.+.++.. .|++. ..+|+|+|++|..+. +.|.+
T Consensus 146 ~l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~vs~G~S~~~~~~~~~~~~~ 213 (345)
T cd07376 146 GLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAERGLAC--PTVSGGGTPTYQLTAGDRAVT 213 (345)
T ss_pred CeEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CEEEeCCCcChhhcccCCCCE
Confidence 99999999999973221 123334444443333221 25543 689999999999876 45554
No 14
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.95 E-value=1.9e-26 Score=217.77 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCC--cccccccHHHHHHHHhcCC-CCceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH--RCFGENYVQEIVEKAAQLP-DDLEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~--~~fGen~vqEa~~~~~~~~-~~i~~ 107 (253)
|+++|++|++.+++++. +.+++|+||+|+||+..+ +.++++|+ ++|++++++||+.++..+. .+|.-
T Consensus 12 dl~al~~Ni~~m~~~~~---------~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~d 82 (389)
T cd06817 12 DRAKFKRNCERMLQRAK---------ALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDD 82 (389)
T ss_pred EHHHHHHHHHHHHHHHH---------HcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhcccccccc
Confidence 99999999999999883 235789999999999888 55678999 9999999999999999754 23311
Q ss_pred EeeC-CCCcccHHHHhhCCCCcc-EEEEeCCHHHHHHHHHH-HHhcCCCcceEEEEEeCCCCCCccCCCh--hhHHHHHH
Q 025380 108 HFIG-NLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRM-VETMGRKPLKVLVQVNTSGEESKSGVEP--SGCLELVK 182 (253)
Q Consensus 108 h~IG-~lq~nk~~~~~~~~~~~~-li~sVds~~~a~~L~~~-a~~~~~~~~~V~lqVnTG~e~~R~Gv~p--~e~~~l~~ 182 (253)
.++| ++.+.++..+++..+.++ +..+|||.++++.|++. +...++ +++|||+|||| |+|+||.| +++.++++
T Consensus 83 illa~~~~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~-~~~V~lkvDtG--m~R~Gv~~~~~~~~~l~~ 159 (389)
T cd06817 83 ILYGLPVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGK-KWSVFIKVDCG--THRAGVPPESEDAKELIQ 159 (389)
T ss_pred EEEECCCCHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCC-ceEEEEEEcCC--CCcCCCCCChHHHHHHHH
Confidence 2335 456688888874001124 99999999999999998 777787 99999999999 99999986 35888999
Q ss_pred HHHhc-CCCeeEeEEeeecCCCCC-----C----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHH
Q 025380 183 HVSQN-CPNLEFCGLMTIGMPDYT-----S----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA 245 (253)
Q Consensus 183 ~i~~~-~~~L~l~GLmth~a~~~~-----~----~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~A 245 (253)
.+. . +|+|++.|+|||+++.+. + .+..+..+..+.+.|++..|+++ .++|.|.|+.|..+
T Consensus 160 ~i~-~~~~~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~vs~GgTpt~~~~ 229 (389)
T cd06817 160 KLE-KASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRK--LTLSVGATPTAHAA 229 (389)
T ss_pred HHH-hhCCCcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CEEEeCCCcchhhh
Confidence 997 7 999999999999998542 1 23567788888888775247765 89999999999874
No 15
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.95 E-value=3.6e-26 Score=215.03 Aligned_cols=205 Identities=18% Similarity=0.219 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEE--
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWH-- 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h-- 108 (253)
|+++|++|++.+++.+. +.++++++++|+|....+ +.+.++|+++|+++++.||..++..+..++.+.
T Consensus 9 dl~~l~~N~~~m~~~~~---------~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~~il~~~~ 79 (382)
T cd06818 9 DASALAHNLAWMQAFAA---------AHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVRRVLLANQ 79 (382)
T ss_pred EHHHHHHHHHHHHHHHh---------hcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCCeEEEecC
Confidence 99999999999999883 346899999999999887 556789999999999999999998754444332
Q ss_pred eeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHhc
Q 025380 109 FIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE-PSGCLELVKHVSQN 187 (253)
Q Consensus 109 ~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~-p~e~~~l~~~i~~~ 187 (253)
.+|.-..+.+..+++.+...++...|||+++++.|++.+.+.++ +++|+|+||+| |+|.|+. ++++.++++.+. .
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~-~~~v~i~vn~g--~~R~G~~~~~~~~~l~~~i~-~ 155 (382)
T cd06818 80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALER-PLNVLIELGVP--GGRTGVRTEAEALALADAIA-A 155 (382)
T ss_pred cCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCHHHHHHHHHHHH-c
Confidence 23544444455565211246688999999999999999998887 99999999998 9999996 577899999998 8
Q ss_pred CCCeeEeEEeeecCCCC--------CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcC
Q 025380 188 CPNLEFCGLMTIGMPDY--------TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNT 249 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~--------~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~G 249 (253)
+|+|++.|||+|.++.+ +..++.|+.+.++++.+++....+....++|||||+||+.++++.
T Consensus 156 ~~~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ilSgGgT~~~~~~~~~~ 225 (382)
T cd06818 156 SPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSAWFDLVAEAL 225 (382)
T ss_pred CCCceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCCHhHHHHHHhh
Confidence 99999999999986631 124578999999999998753222223699999999999988763
No 16
>PRK13340 alanine racemase; Reviewed
Probab=99.95 E-value=7.1e-26 Score=214.70 Aligned_cols=199 Identities=13% Similarity=0.214 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~ 106 (253)
|+++|++|++.+++.+ ++..++++|+|+ ||+..+ +.+.+.|+++|+|+++.||..++..+.++..
T Consensus 46 dl~ai~~N~~~i~~~~----------~~~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~i 115 (406)
T PRK13340 46 SPGAFRHNIKTLRSLL----------ANKSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQL 115 (406)
T ss_pred cHHHHHHHHHHHHHhC----------CCCCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCE
Confidence 9999999999999877 334689999997 788777 5566899999999999999999997544322
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeC-CCCCCccCCChhhHHHH--HHH
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-SGEESKSGVEPSGCLEL--VKH 183 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnT-G~e~~R~Gv~p~e~~~l--~~~ 183 (253)
+.| +.....++..+++ .+++++|||.++++.|++.+.+.++ +++|||+||| | |+|+||.|++...+ +..
T Consensus 116 lvl-~~~~~~el~~~~~----~~l~~~v~s~~~l~~l~~~a~~~~~-~~~V~LkVDt~G--m~R~G~~~~e~~~~~~~~~ 187 (406)
T PRK13340 116 LRV-RSASPAEIEQALR----YDLEELIGDDEQAKLLAAIAKKNGK-PIDIHLALNSGG--MSRNGLDMSTARGKWEALR 187 (406)
T ss_pred EEE-CCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCcCCChhhhhHHHHHHH
Confidence 233 4446677888873 7889999999999999999988887 9999999999 7 99999998754333 336
Q ss_pred HHhcCCCeeEeEEeeecCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHH--HHcCCC
Q 025380 184 VSQNCPNLEFCGLMTIGMP-DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA--VRNTLL 251 (253)
Q Consensus 184 i~~~~~~L~l~GLmth~a~-~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~A--i~~Gs~ 251 (253)
+. .+++|++.|||||+++ |.+.....|.++.++.+.+.+..|+.. ..+|||||+|+... -+.|.+
T Consensus 188 l~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~l~~~~g~~~--~~~~~h~anSa~~~~~~~~~~d 255 (406)
T PRK13340 188 IA-TLPSLGIVGIMTHFPNEDEDEVRWKLAQFKEQTAWLIGEAGLKR--EKITLHVANSYATLNVPEAHLD 255 (406)
T ss_pred HH-hCCCccEEEEEEECCCCCcHHHHHHHHHHHHHHHHHHHhcCCCC--CcCeEEecCCHHHHcCchhcCC
Confidence 76 7899999999999997 333345667777777777654445543 56899999999873 244544
No 17
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.94 E-value=2.1e-25 Score=209.13 Aligned_cols=183 Identities=14% Similarity=0.204 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ ++.++++||+|+ ||+..+.. +.++|+++|||++++||+.+|+.+.. ||
T Consensus 7 dl~al~~N~~~i~~~~----------~~~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~I 76 (368)
T cd06825 7 DLSALEHNVKEIKRLL----------PSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEI 76 (368)
T ss_pred EHHHHHHHHHHHHHhC----------CCCCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCCE
Confidence 8999999999999987 345789999998 99988844 56889999999999999999997543 64
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
.++|...++.+..+++ .+++++|+|.++++.|++.+ + +++|||+|||| |+|+||.|+++ +++..+.
T Consensus 77 --lvl~~~~~~~~~~~~~----~~l~~~i~~~~~l~~l~~~~----~-~~~vhlkvDtG--m~R~G~~~~~~-~~~~~~~ 142 (368)
T cd06825 77 --LILGYTPPVRAKELKK----YSLTQTLISEAYAEELSKYA----V-NIKVHLKVDTG--MHRLGESPEDI-DSILAIY 142 (368)
T ss_pred --EEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHhcC----C-CceEEEEeeCC--CCCCCCCHHHH-HHHHHHH
Confidence 2337666677888773 88999999999999998865 5 78999999999 99999999654 6667776
Q ss_pred hcCCCeeEeEEeeecCCCC--CC-----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchH
Q 025380 186 QNCPNLEFCGLMTIGMPDY--TS-----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDF 242 (253)
Q Consensus 186 ~~~~~L~l~GLmth~a~~~--~~-----~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~ 242 (253)
++|+|++.|+||||++.. +. .+..++...++.+.+++. |+++ ..+|+|-|+.+
T Consensus 143 -~~~~l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~-g~~~--~~~h~~nSa~~ 202 (368)
T cd06825 143 -RLKNLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKAR-GIEV--GKIHIQSSYGI 202 (368)
T ss_pred -hCCCCcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhc-CCCC--CcEEeeCCHHH
Confidence 789999999999999722 21 234455566666667653 6654 57899988543
No 18
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.93 E-value=3.9e-25 Score=205.39 Aligned_cols=199 Identities=20% Similarity=0.251 Sum_probs=160.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCc--eEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDL--EWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i--~~h 108 (253)
|+++|++|++.+++.+. +.++++++++|+|+...+ +.+.++|++.|++++++|+..++..+.+++ .+.
T Consensus 13 d~~~l~~N~~~l~~~~~---------~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~~ili~~~ 83 (358)
T cd06819 13 DLDALERNIKRMAAFAK---------AHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIRDILITNE 83 (358)
T ss_pred EHHHHHHHHHHHHHHHH---------HcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCCeEEEECC
Confidence 99999999999999883 235789999999999887 556788999999999999999988754553 222
Q ss_pred eeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHhc
Q 025380 109 FIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE-PSGCLELVKHVSQN 187 (253)
Q Consensus 109 ~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~-p~e~~~l~~~i~~~ 187 (253)
++|+ .+...+++.....++..+|||+++++.|++.+.+.++ +++|+|+||+| |+|+|+. ++++.++++.+. +
T Consensus 84 ~~~~---~~~~~~~~~~~~~~i~~~vDs~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~l~~~i~-~ 156 (358)
T cd06819 84 VVGP---AKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGV-RLDVLVEIDVG--QGRCGVPPGEAALALARTIA-A 156 (358)
T ss_pred cCCH---HHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCcCCCCChHHHHHHHHHHH-h
Confidence 3344 4444433211347899999999999999999998887 99999999999 9999998 577999999998 8
Q ss_pred CCCeeEeEEeeecCCCC-----C----CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcC
Q 025380 188 CPNLEFCGLMTIGMPDY-----T----STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNT 249 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~-----~----~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~G 249 (253)
+|+|++.|||+|.++.. + ..+..+..+.++.+.+++ .|+.. ..+|+|+|++|..+.+.+
T Consensus 157 ~~~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vsgGgs~~~~~~~~~~ 224 (358)
T cd06819 157 LPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEA-AGLPC--EIVTGGGTGTYEFEAASG 224 (358)
T ss_pred CCCceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--CEEecCCCcChhhhccCC
Confidence 99999999999877522 1 235678888888888875 47654 789999999999987744
No 19
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.93 E-value=1.4e-24 Score=203.27 Aligned_cols=190 Identities=16% Similarity=0.208 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHH-HHHHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~-~~~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ +++.++++|+|+ ||+..+. .+++.|+++|+|++++||..+|..+.+ ++
T Consensus 7 dl~al~~N~~~i~~~~----------~~~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~i 76 (365)
T cd06826 7 STGAFENNIKLLKKLL----------GGNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKI 76 (365)
T ss_pred EHHHHHHHHHHHHHhC----------CCCCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCE
Confidence 8999999999999987 446789999998 9998874 567899999999999999999998544 53
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeC-CCCCCccCCChhh--HHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-SGEESKSGVEPSG--CLELVK 182 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnT-G~e~~R~Gv~p~e--~~~l~~ 182 (253)
+. +|...+.++..+++ +++.++|+|+++++.|++.+.+.++ +++|||+||| | |+|+||.|++ +.+++.
T Consensus 77 -lv-l~~~~~~e~~~~i~----~~i~~~v~s~~~l~~l~~~a~~~~~-~~~v~LkvDt~G--m~R~Gi~~~~~~~~~~~~ 147 (365)
T cd06826 77 -LR-VRTATPSEIEDALA----YNIEELIGSLDQAEQIDSLAKRHGK-TLPVHLALNSGG--MSRNGLELSTAQGKEDAV 147 (365)
T ss_pred -EE-EeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEECCCC--CCCCCCCcchhhHHHHHH
Confidence 22 26667788888884 7899999999999999999988887 9999999999 8 9999999853 566777
Q ss_pred HHHhcCCCeeEeEEeeecCC-CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcch
Q 025380 183 HVSQNCPNLEFCGLMTIGMP-DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGD 241 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~-~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D 241 (253)
.+. ++|+|++.||||||++ |.......+....++.+.+.+..|+.......|.+-|.-
T Consensus 148 ~~~-~~~~l~l~Gi~tH~a~ad~~~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~ 206 (365)
T cd06826 148 AIA-TLPNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFA 206 (365)
T ss_pred HHH-HCCCCcEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHH
Confidence 787 8999999999999987 332223344444444444422234432112455555543
No 20
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.1e-24 Score=202.90 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC--C
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD--D 104 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~--~ 104 (253)
|+.+|++|++.+++.. ++ .+++||+|+ ||+..+ +.++++|+++|||++++||+++|+.+.. +
T Consensus 10 dl~Al~~N~~~i~~~~----------~~-~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~ 78 (360)
T COG0787 10 DLGALRHNLRALRELA----------GP-AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAP 78 (360)
T ss_pred eHHHHHHHHHHHHHhC----------CC-cEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCC
Confidence 9999999999999987 33 799999996 999887 5577899999999999999999999755 5
Q ss_pred ceEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 025380 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (253)
Q Consensus 105 i~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i 184 (253)
| +.+-|.+..+....++ .++++++|+|.++++.+.+.+... + +++|||||||| |+|+||.|++...++..+
T Consensus 79 I-lvL~g~~~~~~~~~~~----~~~l~~~v~s~~ql~~l~~~~~~~-~-~l~vhLkiDTG--M~RlG~~~~e~~~~~~~~ 149 (360)
T COG0787 79 I-LVLEGFFPAEELELAA----AYNLTPVVNSLEQLEALKNAALKN-K-PLKVHLKIDTG--MNRLGLRPEEAVALAIDL 149 (360)
T ss_pred E-EEEcCcCChhhHHHHH----HcCCeEEECCHHHHHHHHHhhhhc-C-ceEEEEEECCC--CCcCCCChHHHHHHHHHH
Confidence 4 2332445555554555 389999999999999999988876 6 99999999999 999999999988888888
Q ss_pred HhcCCCeeEeEEeeecCC
Q 025380 185 SQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 185 ~~~~~~L~l~GLmth~a~ 202 (253)
. .++++.+.|+||||+.
T Consensus 150 ~-~~~~~~~~gi~SHfa~ 166 (360)
T COG0787 150 I-ALKNLDLEGIFSHFAC 166 (360)
T ss_pred h-hccCCceEEEEcccCC
Confidence 7 7888899999999998
No 21
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.93 E-value=7.3e-25 Score=187.77 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCCCceEEeeCCCC
Q 025380 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQ 114 (253)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~IG~lq 114 (253)
|++|++.+++.+ +.++++++|+|+.+...+.+ +.++ ...|++++++|+..++..+..+-.|++.|+.+
T Consensus 1 l~~N~~~i~~~~----------~~~~~i~~~vKan~~~~i~~~~~~~-~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~ 69 (211)
T cd06808 1 IRHNYRRLREAA----------PAGITLFAVVKANANPEVARTLAAL-GTGFDVASLGEALLLRAAGIPPEPILFLGPCK 69 (211)
T ss_pred ChHHHHHHHHhC----------CCCCEEEEEEecCCCHHHHHHHHHc-CCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCC
Confidence 578999999987 34689999999999877744 4566 78999999999999988754333558889987
Q ss_pred -cccHHHHhhCCCCc-cEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCee
Q 025380 115 -SNKVKPLLAGVPNL-AMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLE 192 (253)
Q Consensus 115 -~nk~~~~~~~~~~~-~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~ 192 (253)
++++..+++ . .++.+|||.++++.|.+.+++.++ +++|+|+||+|..|+|+|++++++.++++.+. ..|+++
T Consensus 70 ~~~~l~~~~~----~~~~~~~ids~~~l~~l~~~~~~~~~-~~~v~lrv~~g~~~~R~G~~~~e~~~~~~~i~-~~~~l~ 143 (211)
T cd06808 70 QVSELEDAAE----QGVIVVTVDSLEELEKLEEAALKAGP-PARVLLRIDTGDENGKFGVRPEELKALLERAK-ELPHLR 143 (211)
T ss_pred CHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHHhCC-CceEEEEEcCCCCCCCCCCCHHHHHHHHHHHH-hCCCCc
Confidence 688888883 4 678999999999999999988887 99999999999778999999999999999998 899999
Q ss_pred EeEEeeecCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHH---HHcCCC
Q 025380 193 FCGLMTIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELA---VRNTLL 251 (253)
Q Consensus 193 l~GLmth~a~~~~---~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~A---i~~Gs~ 251 (253)
+.|||||++.... ...+.+..+.++.+.+++ .|.+. ..+|+|+|.++... .+.|.+
T Consensus 144 l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~i~~Ggg~~~~~~~~~~~~~~~ 205 (211)
T cd06808 144 LVGLHTHFGSADEDYSPFVEALSRFVAALDQLGE-LGIDL--EQLSIGGSFAILYLQELPLGTFI 205 (211)
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEECCCCCcCcCCCCCCCceE
Confidence 9999999987332 345677888888888876 46553 78999999998876 444443
No 22
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.93 E-value=1.2e-24 Score=204.87 Aligned_cols=196 Identities=13% Similarity=0.187 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHH-HcCCcccccccHHHHHHHHhcCC-CCceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVY-EAGHRCFGENYVQEIVEKAAQLP-DDLEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~-~~G~~~fGen~vqEa~~~~~~~~-~~i~~h 108 (253)
|+++|.+|++.+++++ +.+++++||+|+|+...+ +.++ ++|+++|+|+++.||+.++.++. .||.
T Consensus 15 Dl~al~~Ni~~m~~~~----------~~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~~dIL-- 82 (379)
T cd06814 15 DKDRLDHNIDLLREHL----------AGSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADIL-- 82 (379)
T ss_pred EHHHHHHHHHHHHHhh----------CCCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCCcCeE--
Confidence 9999999999999988 346899999999999665 5556 68999999999999999998754 2652
Q ss_pred eeC-CCCcccHHHHhh-CC-----CCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChh-hHHHH
Q 025380 109 FIG-NLQSNKVKPLLA-GV-----PNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS-GCLEL 180 (253)
Q Consensus 109 ~IG-~lq~nk~~~~~~-~~-----~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~-e~~~l 180 (253)
+| ++...++..+++ .. ...++.++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.|+ ++.++
T Consensus 83 -l~~p~~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~-~l~V~lkVDtG--m~R~Gv~~~~~~~~l 158 (379)
T cd06814 83 -LGKPMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGL-TLRINLELDVG--LHRGGFADPQTLPKA 158 (379)
T ss_pred -EeCCCCcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCCCCCCCHHHHHHH
Confidence 34 445566644432 00 136799999999999999999988887 99999999999 999999875 68999
Q ss_pred HHHHHhcCCCeeEeEEeeecCCC---C-----CC----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHH
Q 025380 181 VKHVSQNCPNLEFCGLMTIGMPD---Y-----TS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVR 247 (253)
Q Consensus 181 ~~~i~~~~~~L~l~GLmth~a~~---~-----~~----~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~ 247 (253)
++.+. .+++|++.|||||.++. + ++ ..+.++.+.+..+.++. .|+++ ..+|.|.||+|+.+-.
T Consensus 159 ~~~i~-~~~~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~vs~GgTpT~~~~~~ 233 (379)
T cd06814 159 LTAID-APPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLG-AHTQK--LTLNTGGSPTYRLYEG 233 (379)
T ss_pred HHHHH-hCCCceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhc-cCCCc--cEEecCCCcceEEEcC
Confidence 99998 89999999999999872 1 11 12445555666555543 36765 8999999999986543
No 23
>PRK00053 alr alanine racemase; Reviewed
Probab=99.93 E-value=2.5e-24 Score=200.95 Aligned_cols=185 Identities=18% Similarity=0.288 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHHH-HcCCcccccccHHHHHHHHhcCC-CCc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLP-DDL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~~-~~G~~~fGen~vqEa~~~~~~~~-~~i 105 (253)
|+++|++|++.|++.+ +.++++++|+|+ ||...+..++ ++|++.|||++++||..++..+. .+|
T Consensus 9 dl~~l~~N~~~i~~~~----------~~~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~~i 78 (363)
T PRK00053 9 DLDALRHNLRQIRKHA----------PPKSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPI 78 (363)
T ss_pred eHHHHHHHHHHHHHhC----------CCCCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCE
Confidence 8999999999999987 445799999996 9998886654 79999999999999999998743 354
Q ss_pred eEEeeCC-CCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 025380 106 EWHFIGN-LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (253)
Q Consensus 106 ~~h~IG~-lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i 184 (253)
.++|+ ....++..+++ ++++++|||.++++.|++. +.++ +++|||+|||| |+|+||.|+++.++++.+
T Consensus 79 --l~l~~~~~~~e~~~~~~----~~i~~~v~s~~~l~~l~~~--~~~~-~~~V~l~vdtG--~~R~Gi~~~e~~~~~~~i 147 (363)
T PRK00053 79 --LILGGFFPAEDLPLIIA----YNLTTAVHSLEQLEALEKA--ELGK-PLKVHLKIDTG--MHRLGVRPEEAEAALERL 147 (363)
T ss_pred --EEEeCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh--ccCC-CeEEEEEecCC--CCcCCCCHHHHHHHHHHH
Confidence 33454 45677888873 7889999999999999985 5676 89999999999 999999999999999999
Q ss_pred HhcCCCeeEeEEeeecCCCC--C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHH
Q 025380 185 SQNCPNLEFCGLMTIGMPDY--T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFE 243 (253)
Q Consensus 185 ~~~~~~L~l~GLmth~a~~~--~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~ 243 (253)
. .+|+|++.|||||+++.. + ...+.++.+.++.+.+++ .|+ ...|+|-|+-+.
T Consensus 148 ~-~~~~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~----~~~h~~nS~~~~ 204 (363)
T PRK00053 148 L-ACPNVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPG-KGK----PLRHLANSAAIL 204 (363)
T ss_pred H-hCCCCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhh-cCC----ceEeccCCHHHh
Confidence 7 899999999999999732 2 234556666677666754 244 357888887654
No 24
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.92 E-value=4.8e-24 Score=199.17 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHHHHcCCcccccccHHHHHHHHhcCC-CCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-DDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~-~~i~ 106 (253)
|+++|++|++.+++.+ + +++++||+|+ ||+..+..++.. +++|||++++||+.+|+.+. .||
T Consensus 9 dl~al~~N~~~i~~~~----------~-~~~i~aVVKanAYGhG~~~va~~l~~-~~~faVa~l~Ea~~LR~~Gi~~~I- 75 (355)
T PRK03646 9 DLQALKQNLSIVREAA----------P-GARVWSVVKANAYGHGIERIWSALGA-TDGFAVLNLEEAITLRERGWKGPI- 75 (355)
T ss_pred EHHHHHHHHHHHHHhC----------C-CCeEEEEEeeccccCCHHHHHHHHhc-CCEEEEeeHHHHHHHHhcCCCCCE-
Confidence 8999999999999876 3 4789999998 999998776644 99999999999999999754 464
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~ 186 (253)
+.+-|...++++..+++ .+++++|+|.+++++|++.+ .++ +++|||+|||| |+|.||.|+++.++++.+.
T Consensus 76 lvl~~~~~~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~--~~~-~~~vhLkvDTG--M~R~G~~~~e~~~~~~~i~- 145 (355)
T PRK03646 76 LMLEGFFHAQDLELYDQ----HRLTTCVHSNWQLKALQNAR--LKA-PLDIYLKVNSG--MNRLGFQPERVQTVWQQLR- 145 (355)
T ss_pred EEEeCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhc--cCC-CeEEEEEeeCC--CCCCCCCHHHHHHHHHHHH-
Confidence 12225556677887773 89999999999999999875 466 89999999999 9999999999999999997
Q ss_pred cCCCeeEeEEeeecCCC
Q 025380 187 NCPNLEFCGLMTIGMPD 203 (253)
Q Consensus 187 ~~~~L~l~GLmth~a~~ 203 (253)
.+|+|++.|+||||++.
T Consensus 146 ~~~~l~~~Gi~sH~a~a 162 (355)
T PRK03646 146 AMGNVGEMTLMSHFARA 162 (355)
T ss_pred hCCCCEEEEEEcCCCCC
Confidence 89999999999999983
No 25
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.92 E-value=1e-23 Score=215.26 Aligned_cols=186 Identities=12% Similarity=0.143 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ ++.++++||+|+ ||+..+.+ +.++|+++|||++++||+.+|+.+.. ||
T Consensus 465 dl~al~~N~~~i~~~~----------~~~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~Ea~~lr~~g~~~~I 534 (822)
T PRK11930 465 NLNAIVHNLNYYRSKL----------KPETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADEGVSLRKAGITLPI 534 (822)
T ss_pred hHHHHHHHHHHHHhhC----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 9999999999999877 346789999996 99988755 56899999999999999999997544 64
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV 184 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~-~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i 184 (253)
.++|+. +..+..+++ ++++++|+|.++++.|++.+.+.+ + +++|||+|||| |+|.||.|+++.+++..+
T Consensus 535 --lvl~~~-~~~~~~~~~----~~l~~~i~s~~~l~~l~~~~~~~~~~-~~~v~l~vDtG--m~R~G~~~~~~~~~~~~i 604 (822)
T PRK11930 535 --MVMNPE-PTSFDTIID----YKLEPEIYSFRLLDAFIKAAQKKGIT-GYPIHIKIDTG--MHRLGFEPEDIPELARRL 604 (822)
T ss_pred --EEEeCC-HHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcCCC-ceEEEEEeeCC--CCCCCCChHHHHHHHHHH
Confidence 233665 567777773 899999999999999999998777 7 89999999999 999999999999999999
Q ss_pred HhcCCCeeEeEEeeecCCC-C-CC---cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcch
Q 025380 185 SQNCPNLEFCGLMTIGMPD-Y-TS---TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGD 241 (253)
Q Consensus 185 ~~~~~~L~l~GLmth~a~~-~-~~---~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D 241 (253)
. .+|+|++.|+||||++. . +. .+..++...++.+.+++..+.. ...|++-|.-
T Consensus 605 ~-~~~~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~---~~~h~~nS~~ 662 (822)
T PRK11930 605 K-KQPALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYK---PIRHILNSAG 662 (822)
T ss_pred H-hCCCCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC---CcEEccCCHH
Confidence 7 89999999999999972 2 21 3345555566666666432332 2467776654
No 26
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.91 E-value=2e-22 Score=189.96 Aligned_cols=200 Identities=18% Similarity=0.115 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCC-HHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKP-VSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~-~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~ 109 (253)
|+++|++|++.+++.+. +.+++|++|+|+++ ...+ +.+.++|+++|+++++.||..++..+........
T Consensus 34 Dl~~I~~N~~~l~~~~~---------~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~lr~aGi~~~~I~~ 104 (382)
T cd06811 34 DLDQIEENARLLAETAE---------KYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGH 104 (382)
T ss_pred cHHHHHHHHHHHHHHHh---------hCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHHHHHcCCCHHhEEE
Confidence 99999999999998772 23678999999973 4555 5567899999999999999999987533201111
Q ss_pred eCCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCcc------CCChhhHHHHHH
Q 025380 110 IGNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKS------GVEPSGCLELVK 182 (253)
Q Consensus 110 IG~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~------Gv~p~e~~~l~~ 182 (253)
.+...++++..+++ .++ +++|||++++++|++.+.+.++ +++|||+|||| |+|. ||+++++.++++
T Consensus 105 l~~~~~~el~~~v~----~~~~~i~V~s~~~l~~L~~~A~~~g~-~~~V~LrVdtg--~~ri~~g~~~G~~~~e~~~~~~ 177 (382)
T cd06811 105 LVQIPRHQVPAVLA----MRPEVITVYSLEKAREISDAAVELGR-VQDVLLRVYGD--EDTLYPGQEGGFPLEELPAVLA 177 (382)
T ss_pred ccCCCHHHHHHHHH----cCCCEEEECCHHHHHHHHHHHHHcCC-ceEEEEEEECC--CCccccCccceecHHHHHHHHH
Confidence 23344688888884 554 7999999999999999998897 99999999999 8876 999999999999
Q ss_pred HHHhcCCCeeEeEEeeecCC---CCCC----cHHHHHHHHHHHHHHHHHhCCCCCCCeeecc---CcchHHHHHHcCCCC
Q 025380 183 HVSQNCPNLEFCGLMTIGMP---DYTS----TPENFKTLAKCRSEVCKALGIPEEQCDLSMG---MSGDFELAVRNTLLL 252 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~---~~~~----~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG---MS~D~~~Ai~~Gs~~ 252 (253)
.+. ++|+|++.|| ||++. +... ..+.++.+.++++.+++. |+.. ..+|+| +|++++.+.+.|.++
T Consensus 178 ~i~-~l~~l~l~Gi-thf~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~-g~~~--~~is~Gga~ss~~l~~~~~~~~t~ 252 (382)
T cd06811 178 AIK-ALPGIRIAGL-TSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKR-GIEI--LQLNAPSATSCATLPLLAEYGVTH 252 (382)
T ss_pred HHH-cCCCcEEEeE-cccchhhcccCcccccHHHHHHHHHHHHHHHHHC-CCCC--eEEccCCCcchhhHHHHHhCCCcE
Confidence 998 8999999999 55443 3221 245688888888888764 6543 789986 556668888888775
No 27
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.90 E-value=1.1e-22 Score=189.82 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC-Cce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~-~i~ 106 (253)
|+++|++|++.+++.+ + +++++||+|+ ||...+..++.. +++|||++++||..+|+.+.+ +|
T Consensus 7 dl~~l~~N~~~l~~~~----------~-~~~l~~vvKanaYGhG~~~ia~~l~~-~~~f~Vas~~Ea~~lr~~G~~~~i- 73 (354)
T cd06827 7 DLAALRHNLRLVRELA----------P-NSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPI- 73 (354)
T ss_pred EHHHHHHHHHHHHhhC----------C-CCeEEEEEeeccccCCHHHHHHHHHc-CCEEEEccHHHHHHHHhCCCCCCE-
Confidence 8999999999999987 3 3789999997 999988776555 999999999999999997544 53
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~ 186 (253)
+.+-|+..++++..+++ .+++++|+|.++++.|++.+ .++ +++|||+|||| |+|+||.|+++.++++.+.
T Consensus 74 lvl~~~~~~~~~~~~~~----~~l~~~v~s~~~l~~l~~~~--~~~-~~~v~l~vDtG--m~R~Gi~~~e~~~~~~~i~- 143 (354)
T cd06827 74 LLLEGFFSADELPLAAE----YNLWTVVHSEEQLEWLEQAA--LSK-PLNVWLKLDSG--MHRLGFSPEEYAAAYQRLK- 143 (354)
T ss_pred EEEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhc--CCC-CeEEEEEeeCC--cCCCCCCHHHHHHHHHHHH-
Confidence 23336666677887773 78999999999999999877 466 89999999999 9999999998999999887
Q ss_pred cCCCeeEeEEeeecCC
Q 025380 187 NCPNLEFCGLMTIGMP 202 (253)
Q Consensus 187 ~~~~L~l~GLmth~a~ 202 (253)
.+++|++.|+|||++.
T Consensus 144 ~~~~l~l~Gi~tH~a~ 159 (354)
T cd06827 144 ASPNVASIVLMTHFAC 159 (354)
T ss_pred hCCCceEEEEEeeccC
Confidence 8899999999999987
No 28
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.89 E-value=6.3e-22 Score=185.03 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+. +.++++++|+|+|+...+ +.+.++|+..|++++++||..++.++.+++.+ ..
T Consensus 12 d~~~l~~Ni~~~~~~~~---------~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~~il~-~~ 81 (374)
T cd06812 12 DEARMDRNIARLRQRLS---------RLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYRDILY-AV 81 (374)
T ss_pred eHHHHHHHHHHHHHHHH---------HcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCeeEE-eC
Confidence 99999999999999883 236789999999999887 55678999999999999999998876544322 22
Q ss_pred CCCCcccHHHHhhCCC-CccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhh--HHHHHHHHHhc
Q 025380 111 GNLQSNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG--CLELVKHVSQN 187 (253)
Q Consensus 111 G~lq~nk~~~~~~~~~-~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e--~~~l~~~i~~~ 187 (253)
+ ..+.++..+++..+ ..++..+|||.++++.|++.+.+.++ +++|+|+|||| |+|+|+.|++ +..++..+. .
T Consensus 82 ~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~G--~~R~Gv~~~~~~~~~l~~~i~-~ 156 (374)
T cd06812 82 G-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGV-RFPVLIEIDCD--GHRGGIAPDSDALLEIARILH-D 156 (374)
T ss_pred C-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCC-ceEEEEEeCCC--CCcCCCCCCcHHHHHHHHHHh-c
Confidence 3 34566665553111 24688999999999999999998887 99999999999 9999998853 667777775 4
Q ss_pred CCCeeEeEEeeecCCCCC-----Cc----HHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHH
Q 025380 188 CPNLEFCGLMTIGMPDYT-----ST----PENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVR 247 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~~-----~~----~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~ 247 (253)
++|++.|||+|+++.+. .. +..++.+.++.+.+++. |++. ..+|+|.|+.+..+-.
T Consensus 157 -~~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~v~~Ggt~~~~~~~~ 221 (374)
T cd06812 157 -GGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAA-GLPC--PVVSVGSTPTAHFAED 221 (374)
T ss_pred -CCceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC--CEEeecCChhhhhhcc
Confidence 89999999999976321 11 22334477777777763 7654 8999999999987643
No 29
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=99.88 E-value=1.8e-21 Score=180.95 Aligned_cols=189 Identities=19% Similarity=0.262 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-C-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-D-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~h 108 (253)
|+++|++|++.+++.+ +.++++++++|+++...+ +.+.+.|+ +|.++++.|+...+..+.. + | .
T Consensus 7 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~i~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~i--v 73 (368)
T cd06810 7 DLDIIRAHYAALKEAL----------PSGVKLFYAVKANPNPHVLRTLAEAGT-GFDVASKGELALALAAGVPPERI--I 73 (368)
T ss_pred eHHHHHHHHHHHHHhC----------CCCCeEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCHHHE--E
Confidence 8999999999999987 346899999999999877 44567898 9999999999998887543 3 4 4
Q ss_pred eeCCCCc-ccHHHHhhCCCCcc-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCC-----------CCCccCCChh
Q 025380 109 FIGNLQS-NKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG-----------EESKSGVEPS 175 (253)
Q Consensus 109 ~IG~lq~-nk~~~~~~~~~~~~-li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~-----------e~~R~Gv~p~ 175 (253)
|-|+..+ ..+..+++ .+ .+.+|||+++++.|++.+.+.++ +++|+|+||+|. +.+|+|++++
T Consensus 74 ~~gp~~~~~~l~~~~~----~~~~~~~vds~~el~~l~~~~~~~~~-~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~ 148 (368)
T cd06810 74 FTGPAKSVSEIEAALA----SGVDHIVVDSLDELERLNELAKKLGP-KARILLRVNPDVSAGTHKISTGGLKSKFGLSLS 148 (368)
T ss_pred EcCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHHhCC-CCeEEEEECCCCCCCcccCccCCCCCCcCCCHH
Confidence 5577643 66777773 67 79999999999999999988887 899999999982 2389999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeec--cCcchHH
Q 025380 176 GCLELVKHVSQNCPNLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSM--GMSGDFE 243 (253)
Q Consensus 176 e~~~l~~~i~~~~~~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSm--GMS~D~~ 243 (253)
++.++++.+. .++ +++.|||+|.+.. .+...+.|+.+.++++.+++ .|.+. ..||| ||+.||.
T Consensus 149 e~~~~~~~~~-~~~-l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~-~g~~~--~~id~GGG~~~~y~ 216 (368)
T cd06810 149 EARAALERAK-ELD-LRLVGLHFHVGSQILDLETIVQALSDARELIEELVE-MGFPL--EMLDLGGGLGIPYD 216 (368)
T ss_pred HHHHHHHHHH-hCC-CcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCCCcccccC
Confidence 9999999997 788 9999999999862 34566889999999999987 46654 89999 6888875
No 30
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.87 E-value=1.5e-20 Score=177.47 Aligned_cols=194 Identities=19% Similarity=0.180 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHH-cCCcccccccHHHHHHHHhcCCCCceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYE-AGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~-~G~~~fGen~vqEa~~~~~~~~~~i~~h~ 109 (253)
|+++|++|++.+++.. .+.+|++|+|+|++..+ +.+++ .|+++|+++++.||+.++..+..+|. +
T Consensus 17 Dldal~~N~~~l~~~~-----------~~~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~~~IL--l 83 (388)
T cd06813 17 DLDALDANAADLVRRA-----------GGKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFDDIL--V 83 (388)
T ss_pred EHHHHHHHHHHHHHHc-----------CCCcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCCCeEE--E
Confidence 9999999999999875 24579999999999876 45666 69999999999999999997655653 3
Q ss_pred eCCC-CcccHHHHhhC-CCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCC----------ChhhH
Q 025380 110 IGNL-QSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGV----------EPSGC 177 (253)
Q Consensus 110 IG~l-q~nk~~~~~~~-~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv----------~p~e~ 177 (253)
.++. .+.++..+++. -...+++.+|||.++++.|++.+.+.++ +++|||+|||| |+|.|| +++++
T Consensus 84 ~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~IDtG--m~R~G~~~G~~Rs~~~~~~~~ 160 (388)
T cd06813 84 AYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRV-EVRVCIDIDAS--LRFGGLHFGVRRSPLHTPAQA 160 (388)
T ss_pred eCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCC-ceEEEEEECCC--ccccccccCcCCCCCCCHHHH
Confidence 3343 45667777730 0013789999999999999999988887 99999999999 898887 37889
Q ss_pred HHHHHHHHhcCCCeeEeEEeeecCC---CCC--Cc------------HHHHHHHH----HHHHHHHHHhCCCCCCCeeec
Q 025380 178 LELVKHVSQNCPNLEFCGLMTIGMP---DYT--ST------------PENFKTLA----KCRSEVCKALGIPEEQCDLSM 236 (253)
Q Consensus 178 ~~l~~~i~~~~~~L~l~GLmth~a~---~~~--~~------------~~~F~~l~----~~~~~l~~~~~~~~~~~~LSm 236 (253)
.++++.+. .+|+|++.|||||+++ ..+ .. +..|..+. ++.+.|+. .|++. ..++.
T Consensus 161 ~~l~~~i~-~~~~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~-~g~~~--~~vNs 236 (388)
T cd06813 161 LALAKAIA-ARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRA-EGEDL--EFVNG 236 (388)
T ss_pred HHHHHHHh-cCCCcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC--CEEeC
Confidence 99999997 8999999999999665 111 11 12333332 44445554 35543 68999
Q ss_pred cCcchHHHH
Q 025380 237 GMSGDFELA 245 (253)
Q Consensus 237 GMS~D~~~A 245 (253)
|.|++|+..
T Consensus 237 gGt~s~~~~ 245 (388)
T cd06813 237 GGTGSLEST 245 (388)
T ss_pred CCchhheee
Confidence 999998743
No 31
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=99.83 E-value=5.3e-19 Score=165.34 Aligned_cols=188 Identities=17% Similarity=0.209 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCC--CceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPD--DLEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~--~i~~h 108 (253)
|+++|++|++.+++.+ |.++++++++|+++...+..+ .+.| .+|.+++..|+...+..+.+ +| .
T Consensus 13 d~~~l~~n~~~l~~~~----------~~~~~~~yavKan~~~~v~~~l~~~g-~g~~vaS~~E~~~~~~~G~~~~~I--~ 79 (382)
T cd06839 13 DRDRVRERYAALRAAL----------PPAIEIYYSLKANPNPALVAHLRQLG-DGAEVASAGELALALEAGVPPEKI--L 79 (382)
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcC-CCEEEeCHHHHHHHHHcCCCHHHE--E
Confidence 8999999999999876 445789999999999887555 4555 89999999999988877533 45 4
Q ss_pred eeCCC-CcccHHHHhhCCCCcc-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeC-------C----CCCCccCCChh
Q 025380 109 FIGNL-QSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT-------S----GEESKSGVEPS 175 (253)
Q Consensus 109 ~IG~l-q~nk~~~~~~~~~~~~-li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnT-------G----~e~~R~Gv~p~ 175 (253)
+.|+. +.+.+..+++ .+ .+.+|||.++++.|.+.+.+.+. +++|+|+||+ | ++.+|+|++++
T Consensus 80 ~~~~~k~~~~l~~a~~----~g~~~i~vds~~el~~l~~~a~~~~~-~~~v~lRin~~~~~~~~g~~~~~~~sKfG~~~~ 154 (382)
T cd06839 80 FAGPGKSDAELRRAIE----AGIGTINVESLEELERIDALAEEHGV-VARVALRINPDFELKGSGMKMGGGPSQFGIDVE 154 (382)
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCccccCCCCCCcCCCHH
Confidence 55775 5566777773 67 69999999999999999988776 8999999995 2 23499999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 176 GCLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 176 e~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
++.++++.+. .+++|++.|||+|.+. +.+.....|+.+.++++++.+.+|.+. ..|++|.+-
T Consensus 155 ~~~~~~~~~~-~~~~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~idiGGG~ 219 (382)
T cd06839 155 ELPAVLARIA-ALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPL--EFLDLGGGF 219 (382)
T ss_pred HHHHHHHHHH-hCCCCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCC--CEEEecCcc
Confidence 9999999997 8899999999998654 223345788889999988887667654 889999764
No 32
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.83 E-value=9.2e-19 Score=163.11 Aligned_cols=186 Identities=21% Similarity=0.228 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC--CceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPP-DRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p-~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~--~i~~ 107 (253)
|++.|++|++.+++.+ | .++++++++|+.+...+ +.+.+.| .+|.+++..|+...+..+.. +|
T Consensus 9 d~~~l~~n~~~l~~~~----------~~~~~~~~yavKaN~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~~G~~~~~I-- 75 (373)
T cd06828 9 DEATIRENYRRLKEAF----------SGPGFKICYAVKANSNLAILKLLAEEG-LGADVVSGGELYRALKAGFPPERI-- 75 (373)
T ss_pred cHHHHHHHHHHHHHhh----------CCCCcEEEEEehhCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCCcccE--
Confidence 8999999999999987 3 46899999999998877 4456789 89999999999988876533 35
Q ss_pred EeeCCC-CcccHHHHhhCCCCcc-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe------------CCCCCCccCCC
Q 025380 108 HFIGNL-QSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVE 173 (253)
Q Consensus 108 h~IG~l-q~nk~~~~~~~~~~~~-li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn------------TG~e~~R~Gv~ 173 (253)
.+.|+. ..+.+..+++ .+ .+.+|||.++++.|.+.+.+.++ +++|+|+|| ||+..+|+|++
T Consensus 76 ~~~~p~k~~~~l~~a~~----~g~~~~~ids~~el~~l~~~a~~~~~-~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~ 150 (373)
T cd06828 76 VFTGNGKSDEELELALE----LGILRINVDSLSELERLGEIAPELGK-GAPVALRVNPGVDAGTHPYISTGGKDSKFGIP 150 (373)
T ss_pred EEeCCCCCHHHHHHHHH----cCCeEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCCCeecCCCCCCCCCC
Confidence 555776 5567777773 67 89999999999999999998887 899999886 56556999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
++++.++++.+. .+++|++.|||+|.+.. .+...+.+..+.++.+.+++ .|+.. ..|++|..
T Consensus 151 ~~e~~~~~~~~~-~~~~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~idiGGG 215 (373)
T cd06828 151 LEQALEAYRRAK-ELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRE-LGIDL--EFLDLGGG 215 (373)
T ss_pred HHHHHHHHHHHH-hCCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCCC
Confidence 999999999997 88999999999998752 23456788888999888884 46654 78888763
No 33
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=99.82 E-value=1.4e-18 Score=164.71 Aligned_cols=186 Identities=22% Similarity=0.225 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcC-CC-CceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-PD-DLEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~-~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~-~~-~i~~ 107 (253)
|++.|++|++.+++.+ |. ++++++++|+++...+ +.+.+.|. +|.++++.|+...+..+ +. +|
T Consensus 31 d~~~l~~n~~~l~~~~----------~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I-- 97 (417)
T TIGR01048 31 DEETIRERFRAYKEAF----------GGAYSLVCYAVKANSNLALLRLLAELGS-GFDVVSGGELYRALAAGFPPEKI-- 97 (417)
T ss_pred eHHHHHHHHHHHHHhh----------CCCCceEEEEehhCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCcceE--
Confidence 9999999999999987 33 5789999999999877 55668895 99999999999888764 33 35
Q ss_pred EeeCCC-CcccHHHHhhCCCCccEE-EEeCCHHHHHHHHHHHHhcCCCcceEEEEEe------------CCCCCCccCCC
Q 025380 108 HFIGNL-QSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVE 173 (253)
Q Consensus 108 h~IG~l-q~nk~~~~~~~~~~~~li-~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn------------TG~e~~R~Gv~ 173 (253)
.|.|+. ..+.++.+++ .++. .+|||.+++++|.+.+.+.++ +++|+|+|| ||++.+|+|++
T Consensus 98 ~~~gp~k~~~~l~~a~~----~gi~~i~iDs~~el~~l~~~a~~~~~-~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~ 172 (417)
T TIGR01048 98 VFNGNGKSRAELERALE----LGIRCINVDSESELELLNEIAPELGK-KARVSLRVNPGVDAKTHPYISTGLEDSKFGID 172 (417)
T ss_pred EEeCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCCeecCCCCCCCCCC
Confidence 455774 5567777773 6885 999999999999999988886 899999998 45455999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
++++.+++..+. .++++++.|||+|.+. +.+...+.|..+.++++.+++ .+... ..||||.-
T Consensus 173 ~~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~-~g~~l--~~idiGGG 237 (417)
T TIGR01048 173 VEEALEAYLYAL-QLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKA-EGIDL--EFLDLGGG 237 (417)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHh-cCCCc--cEEEeCCc
Confidence 999999999997 8899999999999876 233456889999999999985 46554 79999873
No 34
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=99.82 E-value=1.6e-18 Score=162.53 Aligned_cols=187 Identities=18% Similarity=0.192 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC-CceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~-~i~~h~I 110 (253)
|+++|++|++.+++.+ |+++++++++|+.+...+.+.+..+..+|.+++..|+...+..++. +| .|.
T Consensus 8 d~~~l~~N~~~l~~~~----------~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~~~~~~I--~~~ 75 (377)
T cd06843 8 DLAALRAHARALRASL----------PPGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAVPDAPL--IFG 75 (377)
T ss_pred cHHHHHHHHHHHHHhc----------CCCCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHhcCCCCeE--EEe
Confidence 8999999999999876 4467899999999998886666666789999999999998886643 35 455
Q ss_pred CCCCc-ccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCC------------CCCccCCChhh
Q 025380 111 GNLQS-NKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EESKSGVEPSG 176 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~------------e~~R~Gv~p~e 176 (253)
|+..+ ..+..+++ .++ ..+|||.++++.|.+.+.+.++ +++|+|+||++. ..+|+|+++++
T Consensus 76 gp~k~~~~l~~a~~----~gi~~i~vds~~el~~l~~~a~~~~~-~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~ 150 (377)
T cd06843 76 GPGKTDSELAQALA----QGVERIHVESELELRRLNAVARRAGR-TAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEAD 150 (377)
T ss_pred CCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHHcCC-CceEEEEECCCCCCCCCcceecCCCCCCCCcCHHH
Confidence 77544 34565663 566 4579999999999999988887 899999999962 22499999999
Q ss_pred HHHHHHHHHhcCCCeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 177 CLELVKHVSQNCPNLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 177 ~~~l~~~i~~~~~~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
+.++++.+. .+++|++.|||+|.+.. .+...+.++.+.++..++.+.+|++. ..|.+|.
T Consensus 151 ~~~~~~~~~-~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~idiGG 212 (377)
T cd06843 151 LPDALELLR-DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDL--DVVNVGG 212 (377)
T ss_pred HHHHHHHHH-hCCCccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCCC--cEEEecC
Confidence 999999997 88999999999999862 22334555555555556655556654 5566553
No 35
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=99.82 E-value=3.2e-18 Score=163.24 Aligned_cols=190 Identities=12% Similarity=0.068 Sum_probs=153.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-C-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-D-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~h 108 (253)
|++.|++|++.+++.+... +.++++.+++|+++...| +.+.+.|+ +|.++++.|+...+..+.+ + | +
T Consensus 16 d~~~l~~N~~~l~~~~~~~-------~~~~~~~yavKaN~~~~il~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~ 85 (423)
T cd06842 16 FPQTFRENIAALRAVLDRH-------GVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVRGDRI--V 85 (423)
T ss_pred cHHHHHHHHHHHHHHHHHh-------CCCeEEEEEeccCCCHHHHHHHHHcCC-CEEECCHHHHHHHHHCCCCCCeE--E
Confidence 9999999999999877421 235789999999999887 55668998 9999999999988776433 3 5 5
Q ss_pred eeCCCCccc-HHHHhhCCCCccEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEEEeCCC--CCCccCCChhhHHHHHHHH
Q 025380 109 FIGNLQSNK-VKPLLAGVPNLAMVESVDNEKIAGRLNRMVET-MGRKPLKVLVQVNTSG--EESKSGVEPSGCLELVKHV 184 (253)
Q Consensus 109 ~IG~lq~nk-~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~-~~~~~~~V~lqVnTG~--e~~R~Gv~p~e~~~l~~~i 184 (253)
+.|+..+.+ +..+++ .++..+|||.++++.|.+.++. .+. +++|+|+||+|. .++|+|++++++.++++.+
T Consensus 86 ~~g~~k~~~~i~~a~~----~gi~i~vDs~~el~~l~~~a~~~~~~-~~~v~lRIn~~~~~~~sRfGi~~~e~~~~~~~i 160 (423)
T cd06842 86 ATGPAKTDEFLWLAVR----HGATIAVDSLDELDRLLALARGYTTG-PARVLLRLSPFPASLPSRFGMPAAEVRTALERL 160 (423)
T ss_pred EECCCCCHHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCCC-CCEEEEEEeCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 668877655 555552 6788999999999999999987 676 899999999973 3799999999999999999
Q ss_pred HhcC-CCeeEeEEeeecCCC-CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 185 SQNC-PNLEFCGLMTIGMPD-YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 185 ~~~~-~~L~l~GLmth~a~~-~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
. .+ ++|++.|||+|.+.. .+...+.++.+.++.+.+++ .|++. ..|++|..=
T Consensus 161 ~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~idiGGG~ 214 (423)
T cd06842 161 A-QLRERVRLVGFHFHLDGYSAAQRVAALQECLPLIDRARA-LGLAP--RFIDIGGGF 214 (423)
T ss_pred H-hcCCCCeEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCCCc
Confidence 7 77 899999999999873 33445778888888888875 46654 788877653
No 36
>PLN02537 diaminopimelate decarboxylase
Probab=99.80 E-value=5.4e-18 Score=160.75 Aligned_cols=187 Identities=16% Similarity=0.104 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+. +.++++++++|+++...+ +.+.+.|+..+.++..++...+..+++.+ ...|.
T Consensus 24 d~~~l~~N~~~~~~~~~---------~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~al~~G~~~~-~ii~~ 93 (410)
T PLN02537 24 SKPQITRNYEAYKEALE---------GLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPT-RCIFN 93 (410)
T ss_pred eHHHHHHHHHHHHHHhc---------cCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCcc-eEEEE
Confidence 99999999999998772 125679999999999887 44568899889998876666665445555 22455
Q ss_pred CCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe------------CCCCCCccCCChhhH
Q 025380 111 GNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVEPSGC 177 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn------------TG~e~~R~Gv~p~e~ 177 (253)
|+..+ +.++.+++ .++..+|||.++++.|.+.+++.++ +++|+|+|| ||+..+|+|++++++
T Consensus 94 g~~k~~~~l~~a~~----~gv~i~ids~~el~~l~~~a~~~~~-~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~~~~~ 168 (410)
T PLN02537 94 GNGKLLEDLVLAAQ----EGVFVNVDSEFDLENIVEAARIAGK-KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 168 (410)
T ss_pred CCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCCccccCCCCCCCCCCHHHH
Confidence 66544 44555552 6788999999999999999988887 899999999 563339999999999
Q ss_pred HHHHHHHHhcCC-CeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 178 LELVKHVSQNCP-NLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 178 ~~l~~~i~~~~~-~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
.++++.+. ++| +|++.|||+|.+.. .+...+.++.+.++.+.+++ .|+.. ..|++|
T Consensus 169 ~~~~~~~~-~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~--~~idiG 228 (410)
T PLN02537 169 QWFLDAVK-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRA-QGFEL--SYLNIG 228 (410)
T ss_pred HHHHHHHH-hCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHH-cCCCc--cEEEcC
Confidence 99999997 888 89999999999873 23345667778888888876 36654 666665
No 37
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.79 E-value=7.3e-18 Score=157.52 Aligned_cols=201 Identities=17% Similarity=0.191 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|++.+.+|+..+++++. ..++++.+|+|||+++.+ +..+++|+.+.-+.++.|++.+...+-.+|-|-+
T Consensus 24 D~dr~~~Ni~r~qa~~~---------~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi~dIl~a~- 93 (368)
T COG3616 24 DLDRLDGNIDRMQARAD---------DHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGIDDILLAY- 93 (368)
T ss_pred hHHHHhhhHHHHHHhcc---------ccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCccceEEec-
Confidence 89999999999988873 256899999999999887 6678999999999999999999988766654433
Q ss_pred CCCCcccHHHHhhCCCCcc-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHhcC
Q 025380 111 GNLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQNC 188 (253)
Q Consensus 111 G~lq~nk~~~~~~~~~~~~-li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~i~~~~ 188 (253)
+.....+...+.+.....+ +...|||.+.++.|...+...++ +++|+|+||+| ++|+|+.. +....|+..+. ..
T Consensus 94 p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~-pl~v~iE~D~G--~~R~Gv~t~~~~~~La~~~~-~~ 169 (368)
T COG3616 94 PLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGK-PLRVLIEIDSG--LHRSGVRTPEVAEALAAEIA-AA 169 (368)
T ss_pred CCCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCC-CeeEEEEeCCC--CCccCcCChHHHHHHHHhhh-hc
Confidence 1122223332332113355 88999999999999999999998 99999999999 89999965 45566777787 89
Q ss_pred CCeeEeEEeeecCCCCCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCC
Q 025380 189 PNLEFCGLMTIGMPDYTS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTL 250 (253)
Q Consensus 189 ~~L~l~GLmth~a~~~~~--~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs 250 (253)
++|++.|+|||++|.+.. ....+.. ...+..++ ..|+++ ..+|-|.|++|+.+....+
T Consensus 170 ~~l~~~Gv~~y~gh~~~~~~~~~~~~~-~~a~~~~~-~~g~~~--~~vt~ggtp~~~~~~~~~~ 229 (368)
T COG3616 170 PGLRLAGVMTYPGHSYGPGSEVAAAER-VHAAALLG-AVGRAA--PVLTSGGTPTAELVAGLSS 229 (368)
T ss_pred cceEEeeeecccccccCCcchhhhhhh-hhHHHHhc-ccCCcc--ceeecCCCCchhhhccCCc
Confidence 999999999999884421 1121222 23333333 346665 8999999999999955443
No 38
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=99.76 E-value=8.4e-17 Score=150.96 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-C-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-D-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~h 108 (253)
|+++|++|++.+++.+.. ...++++++++|+.+...+ +.+.+.|+..+ +++..|+...+..+.+ + | .
T Consensus 13 d~~~l~~n~~~l~~~~~~-------~~~~~~i~yavKaN~~~~vl~~l~~~g~~~d-vaS~~E~~~~~~~G~~~~~I--i 82 (379)
T cd06841 13 DEDALRENYRELLGAFKK-------RYPNVVIAYSYKTNYLPAICKILHEEGGYAE-VVSAMEYELALKLGVPGKRI--I 82 (379)
T ss_pred eHHHHHHHHHHHHHHHhh-------cCCCeEEEEEehhcccHHHHHHHHHcCCeEE-EeCHHHHHHHHHcCCChHHE--E
Confidence 999999999999987731 1135789999999988777 44567898888 8889999988876543 3 5 4
Q ss_pred eeCCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC---CCccCCChhhHHHHHHHH
Q 025380 109 FIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE---ESKSGVEPSGCLELVKHV 184 (253)
Q Consensus 109 ~IG~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e---~~R~Gv~p~e~~~l~~~i 184 (253)
+-|+..+ +.+..+++ .+++.+|||+++++.|.+.+.+.++ +++|+|+||++.. |+|+|++++++.++++.+
T Consensus 83 ~~g~~k~~~~l~~a~~----~g~~i~ids~~el~~l~~~~~~~~~-~~~v~lRv~~~~g~~~~~rfGi~~~e~~~~~~~~ 157 (379)
T cd06841 83 FNGPYKSKEELEKALE----EGALINIDSFDELERILEIAKELGR-VAKVGIRLNMNYGNNVWSRFGFDIEENGEALAAL 157 (379)
T ss_pred EECCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHhcCC-cceEEEEECCCCCCCCCCCCCCchhhhHHHHHHH
Confidence 5587754 66777773 6789999999999999999988887 8999999998544 899999998876666555
Q ss_pred Hh--cCCCeeEeEEeeecCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 185 SQ--NCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 185 ~~--~~~~L~l~GLmth~a~~~---~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
.. +.+++++.||++|++... +......+.+.++.+++ .|.+. ..|.+|
T Consensus 158 ~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~---~g~~~--~~idiG 210 (379)
T cd06841 158 KKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL---FGLEL--EYLDLG 210 (379)
T ss_pred HHhhcCCCeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh---cCCCC--CEEEeC
Confidence 40 348999999999998732 22234444444444444 24443 445544
No 39
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=99.75 E-value=1.3e-16 Score=150.58 Aligned_cols=188 Identities=15% Similarity=0.220 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC--CceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~--~i~~h~ 109 (253)
|++.|++|++.+++.+ |.++++++++|+++...+.+.+..+..+|.+++..|+...+..+.+ +| .+
T Consensus 31 d~~~l~~n~~~l~~~~----------~~~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~G~~~~~I--~~ 98 (398)
T TIGR03099 31 DRGLVSERVAALRKAL----------PEELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELAVALDTGYDPGCI--SF 98 (398)
T ss_pred eHHHHHHHHHHHHHhc----------cccCcEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCChhHE--EE
Confidence 9999999999999877 4457899999999998886666667889999999999988776433 35 55
Q ss_pred eCCC-CcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC-----------CCCCccCCChhhH
Q 025380 110 IGNL-QSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS-----------GEESKSGVEPSGC 177 (253)
Q Consensus 110 IG~l-q~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG-----------~e~~R~Gv~p~e~ 177 (253)
.|+. ..+.++.+++ .+++.+|||.++++.|.+.+.+.++ +++|+|+||++ +..+|+|++++++
T Consensus 99 ~gp~k~~~~l~~a~~----~gv~i~vDs~~el~~l~~~a~~~~~-~~~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~ 173 (398)
T TIGR03099 99 AGPGKTDAELRRALA----AGVLINVESLRELNRLAALSEALGL-RARVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQV 173 (398)
T ss_pred eCCCCCHHHHHHHHh----CCCEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCcccccCCCCCcCCCCHHHH
Confidence 6885 4566777763 6889999999999999999988886 88999999962 1239999999999
Q ss_pred HHHHHHHHhcCCCeeEeEEeeecCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 178 LELVKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 178 ~~l~~~i~~~~~~L~l~GLmth~a~~~-~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
.++++.+. +. +|++.||+.|.+.+. + ...+.+..+.+...++.+..|+.. ..|++|.+-
T Consensus 174 ~~~~~~~~-~~-~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~idiGGG~ 235 (398)
T TIGR03099 174 PAALAFIK-AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPV--RVINIGGGF 235 (398)
T ss_pred HHHHHHHH-hC-CCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEeCCcc
Confidence 99999997 76 899999987776532 2 122233333333223333346553 678888654
No 40
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=99.74 E-value=2.4e-16 Score=146.77 Aligned_cols=180 Identities=17% Similarity=0.199 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-CceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~i~~h~ 109 (253)
|+++|++|++.+++.+ | ++++++++|+++...+ +.+.+.|+ +|.++++.|+...+..+.+ + ...|
T Consensus 8 d~~~l~~N~~~~~~~~----------~-~~~~~~avKAN~~~~v~~~l~~~G~-g~~vaS~~E~~~~~~~G~~~~-~i~~ 74 (362)
T cd00622 8 DLGDVVRKYRRWKKAL----------P-RVRPFYAVKCNPDPAVLRTLAALGA-GFDCASKGEIELVLGLGVSPE-RIIF 74 (362)
T ss_pred eHHHHHHHHHHHHHHC----------C-CCeEEEEeccCCCHHHHHHHHHcCC-CeEecCHHHHHHHHHcCCCcc-eEEE
Confidence 8999999999999876 3 4689999999999887 44567899 9999999999998887544 3 2255
Q ss_pred eCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCC------ccCCChhhHHHHH
Q 025380 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEES------KSGVEPSGCLELV 181 (253)
Q Consensus 110 IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~------R~Gv~p~e~~~l~ 181 (253)
-|+. ..+.++.+++ .++ ...+||+++++.|.+.+. +. ++.|+|++|+| |+ |+|++++++.+++
T Consensus 75 ~~~~k~~~~l~~a~~----~gi~~~~~ds~~el~~l~~~~~--~~-~v~vri~~~~~--~~~~~~~sRfGi~~~~~~~~~ 145 (362)
T cd00622 75 ANPCKSISDIRYAAE----LGVRLFTFDSEDELEKIAKHAP--GA-KLLLRIATDDS--GALCPLSRKFGADPEEARELL 145 (362)
T ss_pred cCCCCCHHHHHHHHH----cCCCEEEECCHHHHHHHHHHCC--CC-EEEEEEeeCCC--CCCCcccCCCCCCHHHHHHHH
Confidence 5765 5567777774 455 456799999999998773 34 77888888988 66 8999999999999
Q ss_pred HHHHhcCCCeeEeEEeeecCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 182 KHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 182 ~~i~~~~~~L~l~GLmth~a~~~---~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
+.+. . +++++.|||+|++... +...+.++.+.++.+.+++ .+... ..++.|.
T Consensus 146 ~~~~-~-~~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~id~GG 200 (362)
T cd00622 146 RRAK-E-LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAE-LGFKL--KLLDIGG 200 (362)
T ss_pred HHHH-H-cCCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCc--CEEEeCC
Confidence 9887 6 6899999999998622 2344666677777777775 45543 5565553
No 41
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.64 E-value=2.2e-14 Score=130.34 Aligned_cols=191 Identities=17% Similarity=0.200 Sum_probs=156.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc-CCHHHHHH-HHHcCCcccccccHHHHHHHHhcC-CCCceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT-KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQL-PDDLEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~-h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~-~~~i~~h 108 (253)
|++.|.+|.+.+++... | .++++.+|+|- -|.+.+.+ +.+.|+..++|.++.++..+++.+ ..+. |
T Consensus 9 dl~~ieeNak~~~~~a~-------~--~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~--~ 77 (353)
T COG3457 9 DLDKIEENAKVLQETAA-------R--YGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPG--H 77 (353)
T ss_pred eHHHHHHhHHHHHHHHH-------H--cCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCc--e
Confidence 89999999988887663 2 46899999997 45577755 567899999999999999999874 3342 4
Q ss_pred eeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh---hhHHHHHHHHH
Q 025380 109 FIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP---SGCLELVKHVS 185 (253)
Q Consensus 109 ~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p---~e~~~l~~~i~ 185 (253)
++=......+...+ +.+| +.++.+++.++.|+++|.+.|+ ..+|++.||.| +-|-|+-+ +++.+.++.|.
T Consensus 78 Llr~P~~sei~~vv---~~~D-vs~~sel~~arqlse~A~~~Gk-~h~VlLmVd~~--DlreG~~~~~~~~l~~~V~eI~ 150 (353)
T COG3457 78 LLRSPCMSEIEDVV---RKVD-VSTVSELDTARQLSEAAVRMGK-VHDVLLMVDYG--DLREGQWGFLIEDLEETVEEIQ 150 (353)
T ss_pred EeecccHHHHHHHH---HhcC-eEEEecHHHHHHHHHHHHHhCc-ceeEEEEEEcc--cccCcchhhHHHHHHHHHHHHh
Confidence 43111224566677 4577 7789999999999999999998 99999999999 68999887 78888899997
Q ss_pred hcCCCeeEeEEeeecCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHH
Q 025380 186 QNCPNLEFCGLMTIGMP--DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFE 243 (253)
Q Consensus 186 ~~~~~L~l~GLmth~a~--~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~ 243 (253)
++|++.+.||=|+|++ +.-++.+.|..|.+.++.+++..|+.. ..+|.|.|..+.
T Consensus 151 -~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l--~~vsagnats~~ 207 (353)
T COG3457 151 -QLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQL--KQVSAGNATSLT 207 (353)
T ss_pred -cCCCceEEeeecccccccCcCCCcccHHHHHHHHHHHHHhcCcee--EEecCCCccchh
Confidence 9999999999999987 444667789999999999998778875 899999888764
No 42
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=99.50 E-value=2.9e-12 Score=121.53 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhc-CCCC-ceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~-~~~~-i~~h~ 109 (253)
|.+.|+.|++.++.... ..+.++..++|+.+...|..++...-.+|-++..-|...-... ++.+ | +|
T Consensus 33 d~~~l~~~~~~~~~a~~---------~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gEl~~al~aG~~~~~I--~f 101 (394)
T COG0019 33 DEATLRRNARELKSAFP---------GSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGELELALAAGFPPERI--VF 101 (394)
T ss_pred cHHHHHHHHHHHHHHhc---------cCCceEEEEEcCCCCHHHHHHHHHhCCCceecCHHHHHHHHHcCCChhhE--EE
Confidence 99999999999998772 1147899999999999987777555556777788787754444 4443 6 77
Q ss_pred eCCCCcc-cHHHHhhCCCCccEE-EEeCCHHHHHHHHHHHHhcCCCcceEEEEEe------------CCCCCCccCCChh
Q 025380 110 IGNLQSN-KVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSGVEPS 175 (253)
Q Consensus 110 IG~lq~n-k~~~~~~~~~~~~li-~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn------------TG~e~~R~Gv~p~ 175 (253)
-|+..+. .+..+++ .++. .+|||.++++.|++.+... +.+|+|+|| ||.+++|+|+.++
T Consensus 102 ~g~~ks~~ei~~a~e----~gi~~i~vdS~~El~~l~~~a~~~---~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~ 174 (394)
T COG0019 102 SGPAKSEEEIAFALE----LGIKLINVDSEEELERLSAIAPGL---VARVSLRINPGVSAGTHEYIATGGKSSKFGISPE 174 (394)
T ss_pred CCCCCCHHHHHHHHH----cCCcEEEeCCHHHHHHHHHhcccc---CceEEEEECCCCCCccCccccCCccccccCCCHH
Confidence 7886553 3555553 5665 9999999999999988643 578999999 4567899999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 176 GCLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 176 e~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
++.+++.... +.+++++.||++|-.. |.+.....++.+.+++.++.+.+|+.. ..|++|.
T Consensus 175 ~a~~~~~~~~-~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l--~~inlGG 237 (394)
T COG0019 175 EALDVLERAA-KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQL--EWLNLGG 237 (394)
T ss_pred HHHHHHHHHH-hcCCCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCc--eEEEecC
Confidence 9888888887 7899999999998765 333456778888888888865567764 7888885
No 43
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=99.47 E-value=1.8e-11 Score=116.49 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCC---cccccccHHHHHHHHhc-CCCCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH---RCFGENYVQEIVEKAAQ-LPDDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~---~~fGen~vqEa~~~~~~-~~~~i~ 106 (253)
|++.|++|++.+++.+..+....+.. +++++.+.+|+.+.+.| +.+.+.|+ .+|=+++..|...-... ++++-.
T Consensus 11 d~~~i~~~~~~l~~af~~~~~~~~~~-~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al~~G~~~~~i 89 (409)
T cd06830 11 FPDILRHRIERLNAAFAKAIEEYGYK-GKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALALLKTPDAL 89 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcC-CceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHHhcCCCCCCE
Confidence 89999999999999886554444432 35789999999999887 55567885 57889999998865554 433321
Q ss_pred EEeeCCCCc-ccHHHHhhCCC-CccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC-----------CCCCccCCC
Q 025380 107 WHFIGNLQS-NKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS-----------GEESKSGVE 173 (253)
Q Consensus 107 ~h~IG~lq~-nk~~~~~~~~~-~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG-----------~e~~R~Gv~ 173 (253)
.+-++..+ +.++.++...+ ..+++.+|||.++++.|.+.+...++ +++|.|+||.+ +..+|+|++
T Consensus 90 -i~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~-~~~v~lRinp~~~~~~~~~~~~~~~sKFGi~ 167 (409)
T cd06830 90 -IICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGV-KPLLGVRIKLASKGSGKWQESGGDRSKFGLT 167 (409)
T ss_pred -EEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEccCCCCCcceeccCCCCCCCCCC
Confidence 23233333 33444442000 12467899999999999999988886 88999999854 345899999
Q ss_pred hhhHHHHHHHHHhcC-CCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 174 PSGCLELVKHVSQNC-PNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 174 p~e~~~l~~~i~~~~-~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
++++.++++.+. +. +++++.||+.|... +.+...+.++.+.++.+.+++ .|++. ..|.+|
T Consensus 168 ~~~~~~~~~~~~-~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~-~g~~l--~~iDiG 231 (409)
T cd06830 168 ASEILEVVEKLK-EAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRK-LGANL--RYLDIG 231 (409)
T ss_pred HHHHHHHHHHHH-hcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH-hCCCC--cEEEcC
Confidence 999999999987 65 58999999998765 333456778888888888876 36544 555554
No 44
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=99.46 E-value=5.8e-12 Score=120.27 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcC-CC-----C
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-PD-----D 104 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~-~~-----~ 104 (253)
|++.|++|++.+++ . + ++.+++|+|+...| +.+.+.|+ .|-|++..|+..-...+ ++ +
T Consensus 32 d~~~l~~n~~~l~~-~----------~---~i~yavKan~~~~il~~~~~~G~-g~dvaS~~E~~~a~~~G~~~~~~~~~ 96 (420)
T PRK11165 32 DADIIRRRIAQLRQ-F----------D---VIRFAQKACSNIHILRLMREQGV-KVDAVSLGEIERALAAGYKPGTEPDE 96 (420)
T ss_pred cHHHHHHHHHHHhc-c----------C---cceEEehhCCCHHHHHHHHHcCC-CEEEeCHHHHHHHHHcCCCCCCCCCe
Confidence 99999999998874 3 2 58899999999887 54668898 89999999999766653 32 3
Q ss_pred ceEEeeCCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccC
Q 025380 105 LEWHFIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSG 171 (253)
Q Consensus 105 i~~h~IG~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~G 171 (253)
| .|-|+..+ .+++.+++ .++..+|||++.++.|.+.+. ..+|+|+||.| +..+|+|
T Consensus 97 I--i~~gp~k~~~~l~~a~~----~gv~i~vDs~~el~~i~~~~~-----~~~v~lRvn~~~~~~~~~~~~~~~~~sKFG 165 (420)
T PRK11165 97 I--VFTADVIDRATLARVVE----LKIPVNAGSIDMLDQLGQVSP-----GHRVWLRINPGFGHGHSQKTNTGGENSKHG 165 (420)
T ss_pred E--EEeCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcC-----CCcEEEEECCCCCCCCCCceecCCCCCCCC
Confidence 5 56688744 56777774 678889999999999998764 35799999864 2357899
Q ss_pred CChhhHHHHHHHHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 172 VEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 172 v~p~e~~~l~~~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
++++++..++..+. . ++|++.||++|.++..+ ....-+....+.+.+++ .|.+. ..|++|...
T Consensus 166 i~~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~-~~~~~~~~~~l~~~~~~-~g~~~--~~IdiGGGf 228 (420)
T PRK11165 166 IWHEDLPAALAVIQ-R-YGLKLVGIHMHIGSGVD-YGHLEQVCGAMVRQVIE-LGQDI--EAISAGGGL 228 (420)
T ss_pred CCHHHHHHHHHHHH-h-CCCcEEEEEEeccCCCC-hHHHHHHHHHHHHHHHH-hCCCC--cEEEeCCCc
Confidence 99988888877775 4 68999999999986332 12222222333444443 46554 788888765
No 45
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=99.43 E-value=6e-12 Score=111.81 Aligned_cols=182 Identities=19% Similarity=0.252 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhc-CCCC-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~-~~~~-i~~h 108 (253)
|++.+.+++..+.+.. . |.++++.+.+|+.+...| +.+.+.| .+|=|++..|...-... ++.+ | .
T Consensus 1 d~~~~~~~~~~~~~~~-------~--~~~~~i~yA~KaN~~~~vl~~l~~~g-~g~dv~S~~El~~a~~~g~~~~~I--i 68 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAF-------L--PYNVKIFYAVKANPNPAVLKILAEEG-CGFDVASPGELELALKAGFPPDRI--I 68 (251)
T ss_dssp EHHHHHHHHHHHHHHH-------T--TT-EEEEEEGGGS--HHHHHHHHHTT-CEEEESSHHHHHHHHHTTTTGGGE--E
T ss_pred ChHHHHHHHHHHHHhc-------C--CCCcEEEEEECcCCCHHHHHHHHHcC-CceEEecccchHHHHhhhccccce--e
Confidence 3444555554444433 2 335899999999999877 4456778 47889999998864444 4433 6 5
Q ss_pred eeCCCCcc-cHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCChh
Q 025380 109 FIGNLQSN-KVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPS 175 (253)
Q Consensus 109 ~IG~lq~n-k~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~p~ 175 (253)
|-|+..+. .+..+++ .-....+|||.++++.|.+.+.. . +|.|+||.+ +..+|+|++++
T Consensus 69 ~~gp~k~~~~l~~a~~---~~~~~i~vDs~~el~~l~~~~~~----~-~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~ 140 (251)
T PF02784_consen 69 FTGPGKSDEELEEAIE---NGVATINVDSLEELERLAELAPE----A-RVGLRINPGIGAGSHPKISTGGKDSKFGIDIE 140 (251)
T ss_dssp EECSS--HHHHHHHHH---HTESEEEESSHHHHHHHHHHHCT----H-EEEEEBE-SESTTTSCHHCSSSHTSSSSBEGG
T ss_pred EecCcccHHHHHHHHh---CCceEEEeCCHHHHHHHhccCCC----c-eeeEEEeeccccccccccCCCCCCCcCCcChH
Confidence 66887654 4555552 12347899999999999998752 2 788888844 34579999999
Q ss_pred h-HHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCC-CCCCeeecc
Q 025380 176 G-CLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIP-EEQCDLSMG 237 (253)
Q Consensus 176 e-~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~-~~~~~LSmG 237 (253)
+ +.++++.+. ..+ +++.||+.|... +.+...+....+.++.+.+.+.+|++ . ..|.+|
T Consensus 141 ~~~~~~l~~~~-~~~-l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l--~~idiG 203 (251)
T PF02784_consen 141 EEAEEALERAK-ELG-LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDL--EFIDIG 203 (251)
T ss_dssp GHHHHHHHHHH-HTT-EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT---SEEEEE
T ss_pred HHHHHHHHhhc-cce-EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccc--cEEEee
Confidence 9 999999997 777 999999999754 23345677888888888888777876 4 677776
No 46
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=99.41 E-value=3.3e-11 Score=113.56 Aligned_cols=184 Identities=16% Similarity=0.202 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhc-CCCC-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~-~~~~-i~~h 108 (253)
|++.|++|++.+++.+ |.++++.+.+|+.+...+.+ +.+.|. +|=++...|...-... ++.+ | .
T Consensus 9 d~~~l~~~~~~l~~a~----------~~~~~~~yAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~al~~G~~~~~I--i 75 (379)
T cd06836 9 DLDGFRALVARLTAAF----------PAPVLHTFAVKANPLVPVLRLLAEAGA-GAEVASPGELELALAAGFPPERI--V 75 (379)
T ss_pred cHHHHHHHHHHHHHhc----------CCCcEEEEEEecCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCChhhE--E
Confidence 7889999999999877 34578999999999988755 556776 7888999998865554 4443 6 5
Q ss_pred eeCCCCcc-cHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEEEeC------------CCCCCccCCCh
Q 025380 109 FIGNLQSN-KVKPLLAGVPNLAMVESVDNEKIAGRLNRMVET-MGRKPLKVLVQVNT------------SGEESKSGVEP 174 (253)
Q Consensus 109 ~IG~lq~n-k~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~-~~~~~~~V~lqVnT------------G~e~~R~Gv~p 174 (253)
|-|+..+. .+..+++ .++..++||++++++|.+.+.. .+. ..+|.|+||. |+..+|+|+++
T Consensus 76 ~~gp~K~~~~L~~ai~----~gv~i~iDS~~El~~i~~~a~~~~~~-~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~ 150 (379)
T cd06836 76 FDSPAKTRAELREALE----LGVAINIDNFQELERIDALVAEFKEA-SSRIGLRVNPQVGAGKIGALSTATATSKFGVAL 150 (379)
T ss_pred EeCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCccccccCCCCCCCCcCc
Confidence 66887663 4555553 6777899999999999999876 565 7899999984 34469999999
Q ss_pred h--hHHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccC
Q 025380 175 S--GCLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGI-PEEQCDLSMGM 238 (253)
Q Consensus 175 ~--e~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~-~~~~~~LSmGM 238 (253)
+ .+..++..+. ..++ +.||+.|.+. +.+.....++.+.++.+.+.+.+|. +. ..|.+|.
T Consensus 151 ~~~~~~~~~~~~~-~~~~--l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~IDiGG 215 (379)
T cd06836 151 EDGARDEIIDAFA-RRPW--LNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQI--TRIDIGG 215 (379)
T ss_pred chhHHHHHHHHHh-cCCC--eEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCC
Confidence 8 4666666654 4444 6799998864 2333456667777777788765553 33 5666653
No 47
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=99.31 E-value=3.3e-10 Score=106.93 Aligned_cols=178 Identities=13% Similarity=0.072 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|++.|++|++.+++... +.++++.+.+|+.+...+.+ +.+.|+ +|-++...|...-..++++++ ++.
T Consensus 9 d~~~i~~~~~~l~~~~~---------~~~~~i~YAvKAN~~~~il~~l~~~g~-G~D~aS~gEl~~al~a~~~~~--i~~ 76 (380)
T TIGR01047 9 EEEKLRKNLEILEHVQQ---------QSGAKVLLALKGFAFWGVFPILREYLD-GCTASGLWEAKLAKEEFGKEI--HVY 76 (380)
T ss_pred cHHHHHHHHHHHHHHHh---------hcCCEEEEEEcccCChHHHHHHHHHCC-cccccCHHHHHHHHHHCCCcE--EEE
Confidence 88999999999987663 23578999999999988744 456664 577888888775333365445 344
Q ss_pred CCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeC------------CCCCCccCCChhhH
Q 025380 111 GNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT------------SGEESKSGVEPSGC 177 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnT------------G~e~~R~Gv~p~e~ 177 (253)
|+..+ +.++.++ + .+.+.+|||+++++.|.+.+.+.++ ..+|.|+||. |+..+|+|++++++
T Consensus 77 ~~~k~~~el~~a~---~-~g~~i~idS~~el~~l~~~a~~~~~-~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~ 151 (380)
T TIGR01047 77 SPAYSEEDVPEII---P-LADHIIFNSLAQWARYRHLVEGKNS-AVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHF 151 (380)
T ss_pred CCCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHH
Confidence 77543 4556566 3 4678999999999999999987776 7899999994 34469999999876
Q ss_pred HHHHHHHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 178 LELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 178 ~~l~~~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
.+. + .+++.||+.|-+.. .. .+.|.++.+....+...+... ...|.+|.
T Consensus 152 ~~~---~-----~~~i~GlH~HiGS~-~~-~~~~~~~i~~~~~~~~~~~~~--~~~iDiGG 200 (380)
T TIGR01047 152 EES---L-----LDGINGLHFHTLCE-KD-ADALERTLEVIEERFGEYLPQ--MDWVNFGG 200 (380)
T ss_pred hHh---H-----hhcCcEEEEecCCC-CC-HHHHHHHHHHHHHHHHHhhCC--CCEEEeCC
Confidence 543 1 24678999988754 22 345666666555555443322 35677664
No 48
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=99.31 E-value=6.9e-10 Score=110.76 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCC---cccccccHHHHHHHHhcCC-CCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH---RCFGENYVQEIVEKAAQLP-DDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~---~~fGen~vqEa~~~~~~~~-~~i~ 106 (253)
+.+.|++|++.+++....+.+..++ +.+.++.+.+|+.+...| +.+.+.|. .+|=+.+..|...-...+. ++..
T Consensus 63 d~~iL~~~i~~l~~aF~~a~~~~~Y-~g~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~p~~~ 141 (624)
T TIGR01273 63 FPDILQHRIRSLNDAFANAIEEYQY-AGHYQGVYPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAP 141 (624)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc-CCCeeEEEEeccCCcHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCCCCCE
Confidence 8999999999999998777777665 446899999999888776 55678885 3577788888876555443 3333
Q ss_pred EEeeCCCCcccHHHHhhCCC-CccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe-----------CCCCCCccCCCh
Q 025380 107 WHFIGNLQSNKVKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSGVEP 174 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~-~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn-----------TG~e~~R~Gv~p 174 (253)
+.+-|.-..+.+..++.+.+ ..+++++|||++.++.|.+.+.+.++ +..|.|+|| ||++.+|||+++
T Consensus 142 Ii~NG~K~~e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~-~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~ 220 (624)
T TIGR01273 142 IVCNGYKDREYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGV-KPKLGLRARLASKGSGKWASSGGEKSKFGLSA 220 (624)
T ss_pred EEeCCCCCHHHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCC-CceEEEEEecCCCCCCCcccCCCCCCCCCCCH
Confidence 34446322223444431000 14678999999999999999998887 788999986 556679999999
Q ss_pred hhHHHHHHHHHhcCCCee-EeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 175 SGCLELVKHVSQNCPNLE-FCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 175 ~e~~~l~~~i~~~~~~L~-l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
+++.++++.++ ..+.+. +.||+.|-+. +.+.....++.+.+++.++++ .|.+. ..|.+|
T Consensus 221 ~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~-~G~~l--~~LDIG 283 (624)
T TIGR01273 221 TQILEVVRLLE-QNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRK-LGAKI--TYVDVG 283 (624)
T ss_pred HHHHHHHHHHH-hcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeC
Confidence 99999999997 777664 9999998765 233456778888888888886 46554 555544
No 49
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=99.31 E-value=2e-10 Score=108.99 Aligned_cols=179 Identities=12% Similarity=0.143 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhc-CCCC-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQ-LPDD-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~-~~~~-i~~h 108 (253)
|++.|++|++.+++.+ | .+++.+.+|+.+...+.+ +.+.|. +|=++...|...-... ++.. | .
T Consensus 19 d~~~i~~~~~~l~~~l----------p-~~~~~YAvKaN~~~~il~~l~~~G~-g~DvaS~gEl~~al~~G~~~~~I--i 84 (394)
T cd06831 19 DLGKIVKKHSQWQTVM----------A-QIKPFYTVRCNSTPAVLEILAALGT-GFACSSKNEMALVQELGVSPENI--I 84 (394)
T ss_pred EHHHHHHHHHHHHHHC----------C-CCeEEeeeccCCCHHHHHHHHHcCC-CeEeCCHHHHHHHHhcCCCcCCE--E
Confidence 9999999999999988 4 688999999999988755 556785 7888999998765444 4443 6 6
Q ss_pred eeCCCCcc-cHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC------CCccCCChhhHHHH
Q 025380 109 FIGNLQSN-KVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLEL 180 (253)
Q Consensus 109 ~IG~lq~n-k~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e------~~R~Gv~p~e~~~l 180 (253)
|-|+..+. .++.+++ .++ +.++||++++++|.+.+ . ..+|+|+||.+.. .+|+|++++++.++
T Consensus 85 f~gp~K~~~~l~~a~~----~Gv~~i~vDS~~El~~i~~~~----~-~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~~ 155 (394)
T cd06831 85 YTNPCKQASQIKYAAK----VGVNIMTCDNEIELKKIARNH----P-NAKLLLHIATEDNIGGEEMNMKFGTTLKNCRHL 155 (394)
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHhC----C-CCcEEEEEeccCCCCCCccCCCCCCCHHHHHHH
Confidence 67887554 4555553 677 67999999999998754 2 4578888885321 26999999999999
Q ss_pred HHHHHhcCCCeeEeEEeeecCCCC---CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 181 VKHVSQNCPNLEFCGLMTIGMPDY---TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 181 ~~~i~~~~~~L~l~GLmth~a~~~---~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
++.++ . .+|++.||+.|.+... +.....+..++.+.+.+++ +|.+. ..|.+|.
T Consensus 156 l~~~~-~-~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~-~g~~l--~~ldiGG 211 (394)
T cd06831 156 LECAK-E-LDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEE-FGFKM--NMLDIGG 211 (394)
T ss_pred HHHHH-H-CCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCC--CEEEeCC
Confidence 99987 6 4899999999976522 2334455555666666654 56654 6677664
No 50
>PRK05354 arginine decarboxylase; Provisional
Probab=99.31 E-value=6e-10 Score=111.33 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCc---ccccccHHHHHHHHhcCCC-Cce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHR---CFGENYVQEIVEKAAQLPD-DLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~---~fGen~vqEa~~~~~~~~~-~i~ 106 (253)
+.+.|++|++.+++....+.+..+.. .+.++++.+|+.+...| +.+.+.|.. +|=+.+..|...-...+.+ +..
T Consensus 70 ~~~~L~~ri~~L~~aF~~a~~~~~y~-g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~~~~~l 148 (634)
T PRK05354 70 FPDILQDRVRSLNAAFKKAIEEYGYQ-GDYRGVYPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGAL 148 (634)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccC-CCceEEEEeccCChHHHHHHHHHcCCCCceeEEECCHHHHHHHHHcCCCCCcE
Confidence 99999999999999888777777763 45789999999888776 566788964 5777888888765554433 321
Q ss_pred EEeeCCCCccc-HHHHhhCCC-CccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe-----------CCCCCCccCCC
Q 025380 107 WHFIGNLQSNK-VKPLLAGVP-NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSGVE 173 (253)
Q Consensus 107 ~h~IG~lq~nk-~~~~~~~~~-~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn-----------TG~e~~R~Gv~ 173 (253)
+.+-| ....+ ++.++.+.+ ..+++.+|||++.++.|.+.+.+.++ +..|.|+|+ ||++.+|||++
T Consensus 149 Ii~NG-~Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~-~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~ 226 (634)
T PRK05354 149 IVCNG-YKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGV-KPRLGVRARLASQGSGKWQSSGGEKSKFGLS 226 (634)
T ss_pred EEcCC-CCCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCcccCCCCCCCCCCC
Confidence 22324 23222 444331000 13678999999999999999998887 788888886 45678999999
Q ss_pred hhhHHHHHHHHHhcCCCe-eEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 174 PSGCLELVKHVSQNCPNL-EFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L-~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
++++.++++.++ +.+.+ ++.||+.|.+.. .+.....++.+.+++.++++ .|.+. ..|.+|
T Consensus 227 ~~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~-~G~~l--~~LDIG 290 (634)
T PRK05354 227 ATEVLEAVERLR-EAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRK-LGAPI--QYLDVG 290 (634)
T ss_pred HHHHHHHHHHHH-hCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeC
Confidence 999999999998 88777 599999987652 23456777888888888876 46553 455544
No 51
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=99.18 E-value=4.8e-09 Score=98.57 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhc---CCCC-ce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ---LPDD-LE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~---~~~~-i~ 106 (253)
|++.|++|++.++. + ++..++.+.+|+.+...+ +.+.+.|. +|=++...|...-... ++.+ |
T Consensus 18 d~~~l~~~~~~l~~-~----------~~~~~~~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I- 84 (368)
T cd06840 18 DLETVRARARQVSA-L----------KAVDSLFYAIKANPHPDVLRTLEEAGL-GFECVSIGELDLVLKLFPDLDPRRV- 84 (368)
T ss_pred cHHHHHHHHHHHHh-C----------CCCCeEEEEeccCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcccCCCcceE-
Confidence 99999999998864 3 233479999999999877 55567885 7888999998865543 4333 5
Q ss_pred EEeeCCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCC
Q 025380 107 WHFIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVE 173 (253)
Q Consensus 107 ~h~IG~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~ 173 (253)
.|-|+..+ ..++.+++ .++..++||+++++.|.+.+. ..+|.|+||.+ +..+|+|++
T Consensus 85 -if~gp~K~~~~l~~a~~----~gv~i~~Ds~~El~~i~~~~~-----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~ 154 (368)
T cd06840 85 -LFTPNFAARSEYEQALE----LGVNVTVDNLHPLREWPELFR-----GREVILRIDPGQGEGHHKHVRTGGPESKFGLD 154 (368)
T ss_pred -EEcCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-----cCCEEEEECCCCCCCCCCceecCCCCCCCCCC
Confidence 56688765 45676663 577779999999999987653 45788898854 345999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHH
Q 025380 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCK 223 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~ 223 (253)
++++.++++.+. . .++++.||+.|-+..... -+.|..+.+...++.+
T Consensus 155 ~~~~~~~l~~~~-~-~~l~l~GlhfH~GS~~~~-~~~~~~~~~~~~~l~~ 201 (368)
T cd06840 155 VDELDEARDLAK-K-AGIIVIGLHAHSGSGVED-TDHWARHGDYLASLAR 201 (368)
T ss_pred HHHHHHHHHHHH-h-CCCcEEEEEEECCCCCCC-HHHHHHHHHHHHHHHH
Confidence 999999998886 5 479999999988753322 2345555555555554
No 52
>PLN02439 arginine decarboxylase
Probab=99.17 E-value=8.4e-09 Score=101.88 Aligned_cols=195 Identities=17% Similarity=0.153 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCc---ccccccHHHHHHHHhcC--C-CCc
Q 025380 33 DGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHR---CFGENYVQEIVEKAAQL--P-DDL 105 (253)
Q Consensus 33 l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~---~fGen~vqEa~~~~~~~--~-~~i 105 (253)
.+.|++|++.+++....+....+. +...++++.+|+.+...| +.+.+.|.. ++=+.+..|...-...+ . .+.
T Consensus 6 ~d~l~~ri~~L~~aF~~ai~~~~y-~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~~~~ 84 (559)
T PLN02439 6 PDVLKNRLESLQSAFDYAIQSQGY-NSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDA 84 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-CCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCCCCe
Confidence 456889999999888766555554 446789999999888776 556788853 45577888877654443 2 222
Q ss_pred eEEeeCCC-Cccc-HHHHhh--CCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe-----------CCCCCCcc
Q 025380 106 EWHFIGNL-QSNK-VKPLLA--GVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKS 170 (253)
Q Consensus 106 ~~h~IG~l-q~nk-~~~~~~--~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn-----------TG~e~~R~ 170 (253)
.++++- .+.. +..++. ++ ..+++++|||++.++.|.+.+++.++ +..|.|+|| ||++.+||
T Consensus 85 --ii~~NG~Kd~e~i~~Al~~~~l-G~~~~IviDs~~EL~~I~~~a~~l~~-~p~IglRi~~~~~~~~~~~~tgg~~sKF 160 (559)
T PLN02439 85 --FLICNGYKDAEYVSLALLARKL-GLNTVIVLEQEEELDLVIEASQRLGV-RPVIGVRAKLRTKHSGHFGSTSGEKGKF 160 (559)
T ss_pred --EEECCCCCCHHHHHHHHHhhhC-CCCeEEEECCHHHHHHHHHHHHHcCC-CceEEEEEecCCCCCCCccccCCCCCCC
Confidence 224544 3332 332221 11 14568899999999999999998886 778888875 56778999
Q ss_pred CCChhhHHHHHHHHHhcCCCee-EeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeec
Q 025380 171 GVEPSGCLELVKHVSQNCPNLE-FCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSM 236 (253)
Q Consensus 171 Gv~p~e~~~l~~~i~~~~~~L~-l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSm 236 (253)
|++++++..+++.++ ..+.+. +.||+.|.+.. .+..+..++.+.+++.++++ .|.+. ..|.+
T Consensus 161 Gl~~~ei~~~i~~lk-~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~-~G~~l--~~lDI 226 (559)
T PLN02439 161 GLTATEIVRVVRKLR-KEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVR-LGAPM--RVIDI 226 (559)
T ss_pred CCCHHHHHHHHHHHH-hCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--cEEEe
Confidence 999999999999998 788886 99999987652 33456777778888888886 46554 44544
No 53
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.08 E-value=1.3e-08 Score=105.39 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=128.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhc---CCCC-ce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQ---LPDD-LE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~---~~~~-i~ 106 (253)
|++.|++|++.+++ . ++.+++.+.+|+.+.+.+ +.+.+.|+ +|=++...|...-... ++.+ |
T Consensus 509 d~~~i~~n~~~l~~-~----------~~~~~i~yAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~~~G~~~~~I- 575 (861)
T PRK08961 509 HLPTVRARARALAA-L----------AAVDQRFYAIKANPHPAILRTLEEEGF-GFECVSIGELRRVFELFPELSPERV- 575 (861)
T ss_pred EHHHHHHHHHHHHh-c----------CCCCcEEEEeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHhcCCCCCCeE-
Confidence 99999999999876 3 234579999999999887 55668898 8999999999865543 4333 5
Q ss_pred EEeeCCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCC
Q 025380 107 WHFIGNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVE 173 (253)
Q Consensus 107 ~h~IG~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~ 173 (253)
.|-|+..+ +.+..+++ .++..++||+++++.|.+.+. ..+|.|+||.+ +..+|+|++
T Consensus 576 -i~~gp~K~~~~l~~A~~----~gv~i~vDS~~EL~~i~~~~~-----~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~ 645 (861)
T PRK08961 576 -LFTPNFAPRAEYEAAFA----LGVTVTLDNVEPLRNWPELFR-----GREVWLRIDPGHGDGHHEKVRTGGKESKFGLS 645 (861)
T ss_pred -EECCCCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhCC-----CCcEEEEECCCCCCCCCcccccCCCCCCCCCC
Confidence 55588765 45566663 677789999999999998763 23677888853 345899999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
++++.++++.+. . .++++.||+.|.+..... .+.|..+.+...++.+.++ . ...|++|
T Consensus 646 ~~~~~~~~~~~~-~-~~l~l~GlH~H~GS~~~~-~~~~~~~~~~~~~l~~~~~-~--~~~iDiG 703 (861)
T PRK08961 646 QTRIDEFVDLAK-T-LGITVVGLHAHLGSGIET-GEHWRRMADELASFARRFP-D--VRTIDLG 703 (861)
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcc-C--CcEEEec
Confidence 999999999886 5 689999999998753221 1345555555555554432 2 3567666
No 54
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=99.02 E-value=3.7e-08 Score=91.79 Aligned_cols=144 Identities=13% Similarity=0.050 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|++.|++|++.+++... ++++++.+.+|+.+.+.|.+ +.++|+ +|=++...|...-...++..+ .+.
T Consensus 7 d~~~i~~~~~~~~~~~~---------~~~~~i~YAvKaN~~~~il~~l~~~G~-g~DvaS~~El~~a~~~~~~~~--i~~ 74 (346)
T cd06829 7 DEAKLRRNLEILKRVQE---------RSGAKILLALKAFSMWSVFPLIREYLD-GTTASSLFEARLGREEFGGEV--HTY 74 (346)
T ss_pred eHHHHHHHHHHHHHHHh---------ccCCEEEEEEhhcCCHHHHHHHHHhCC-ccEecCHHHHHHHHHHCCCce--EEE
Confidence 78899999998887542 24678999999999988744 556774 788888888875444443332 223
Q ss_pred CCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCChhhH
Q 025380 111 GNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPSGC 177 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~p~e~ 177 (253)
|+..+ +.+..++ + .+...++||++++++|.+.+.. + +.+|+|+||.+ +..+|+|++++++
T Consensus 75 ~~~k~~~el~~a~---~-~~~~~~~Ds~~EL~~l~~~~~~--~-~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~ 147 (346)
T cd06829 75 SPAYRDDEIDEIL---R-LADHIIFNSLSQLERFKDRAKA--A-GISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDEL 147 (346)
T ss_pred CCCCCHHHHHHHH---H-cCCEEEECCHHHHHHHHHHHhc--c-CCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHh
Confidence 66543 3344455 3 4568899999999999998874 4 67899999853 2368999999865
Q ss_pred HHHHHHHHhcCCCeeEeEEeeecCC
Q 025380 178 LELVKHVSQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 178 ~~l~~~i~~~~~~L~l~GLmth~a~ 202 (253)
.. . -++++.||+.|...
T Consensus 148 ~~---~-----~~~~v~Glh~HvGS 164 (346)
T cd06829 148 EE---E-----DLDGIEGLHFHTLC 164 (346)
T ss_pred hh---h-----hhcCceEEEEccCc
Confidence 42 1 14678899998765
No 55
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=98.75 E-value=6e-07 Score=84.72 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCCC-ceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPDD-LEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~-~~G~~~fGen~vqEa~~~~~~~~~~-i~~h~ 109 (253)
|+.+|..++...++.+ +.|+.-+++|-.+.+.|.+.+ .+|.-.++.+..+..+.+.-+++++ | .|
T Consensus 62 Dl~~I~Rkl~~w~~~L-----------prV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~ri--Iy 128 (448)
T KOG0622|consen 62 DLGAIERKLEAWKKAL-----------PRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERI--IY 128 (448)
T ss_pred cHHHHHHHHHHHHHhc-----------ccCCCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHe--Ee
Confidence 9999999999999888 468889999999988876654 6788778888887777777666554 6 55
Q ss_pred eCCCCc-ccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC------CCccCCChhhHHHHH
Q 025380 110 IGNLQS-NKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLELV 181 (253)
Q Consensus 110 IG~lq~-nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e------~~R~Gv~p~e~~~l~ 181 (253)
.++..+ ..++.++. .++ .-++||..++.++.+. .. ..+++|.|.|... ..|+|++++++..|+
T Consensus 129 anpcK~~s~IkyAa~----~gV~~~tfDne~el~kv~~~----hP-~a~llLrIatdds~a~~~l~~KFG~~~~~~~~lL 199 (448)
T KOG0622|consen 129 ANPCKQVSQIKYAAK----HGVSVMTFDNEEELEKVAKS----HP-NANLLLRIATDDSTATCRLNLKFGCSLDNCRHLL 199 (448)
T ss_pred cCCCccHHHHHHHHH----cCCeEEeecCHHHHHHHHHh----CC-CceEEEEEccCCCcccccccCccCCCHHHHHHHH
Confidence 677644 44566652 454 7789999988777653 33 6789999986532 459999999999999
Q ss_pred HHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeec--cCcchHHH
Q 025380 182 KHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSM--GMSGDFEL 244 (253)
Q Consensus 182 ~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSm--GMS~D~~~ 244 (253)
+..+ .+ +|++.|+..|-+. +.+..+......+.++|...+ +|+.. ..|-+ |-.+|+..
T Consensus 200 d~ak-~l-~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e-~Gf~m--~~LdiGGGf~g~~~~ 262 (448)
T KOG0622|consen 200 DMAK-EL-ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAE-LGFEM--DILDIGGGFPGDEGH 262 (448)
T ss_pred HHHH-Hc-CceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHh-cCceE--EEeecCCCCCCccch
Confidence 9987 65 8999999998765 334457788888999998874 78875 45554 44566543
No 56
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=95.00 E-value=2.7 Score=41.97 Aligned_cols=196 Identities=16% Similarity=0.147 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHH-HHHHHHcCCcc-ccc---ccHHHHHHHHhcCCC-C-ce
Q 025380 34 GVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSV-IRQVYEAGHRC-FGE---NYVQEIVEKAAQLPD-D-LE 106 (253)
Q Consensus 34 ~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~-i~~~~~~G~~~-fGe---n~vqEa~~~~~~~~~-~-i~ 106 (253)
+-|.+.++.|....+++.+.+++ |..-+.++-+|-.--.. |..++..|-.. ||- ++.+=...+.-...+ . |+
T Consensus 88 ~IL~~Rl~~ln~aF~~Ai~ey~Y-~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~Iv 166 (652)
T COG1166 88 QILQHRLRSLNAAFARAIEEYGY-PGGYFAVYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSLIV 166 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCceeEEEEeeecchHHHHHHHHhccCCCCCcccCCCHHHHHHHHHhcCCCCCeEE
Confidence 44688888888888888888776 55678888899633333 44555554222 432 222222233333222 2 21
Q ss_pred EEeeCCCCcccHHHHh--hCCCCccEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEEEe---------CCCCCCccCCCh
Q 025380 107 WHFIGNLQSNKVKPLL--AGVPNLAMVESVDNEKIAGRLNRMVETMGRK-PLKVLVQVN---------TSGEESKSGVEP 174 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~--~~~~~~~li~sVds~~~a~~L~~~a~~~~~~-~~~V~lqVn---------TG~e~~R~Gv~p 174 (253)
- =|-=..+-++.++ +.+. ...+.+|.-+..++.+-+.|++.|.+ .+.|-+++- +|++-+|||+++
T Consensus 167 C--NGyKDrEyI~lAlig~kLG-h~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa 243 (652)
T COG1166 167 C--NGYKDREYIRLALIGEKLG-HKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSA 243 (652)
T ss_pred e--cCcccHHHHHHHHHHHHhC-CceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEecccccccccccCchhccCCCH
Confidence 1 1333333333322 1222 56799999999999999999998852 344555554 788999999999
Q ss_pred hhHHHHHHHHHhcCCCee-EeEEeeecCCCCC---CcHHHHHHHHHHHHHHHHHhCCCCCCCeeecc
Q 025380 175 SGCLELVKHVSQNCPNLE-FCGLMTIGMPDYT---STPENFKTLAKCRSEVCKALGIPEEQCDLSMG 237 (253)
Q Consensus 175 ~e~~~l~~~i~~~~~~L~-l~GLmth~a~~~~---~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmG 237 (253)
.++..+++.++ ...-|. +.=|+.|.+..-+ .+...++...+++-+|.+ .|.+. ..+-.|
T Consensus 244 ~qvL~~v~~Lr-e~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~k-lGa~i--~~~dVG 306 (652)
T COG1166 244 TQVLQVVERLR-EANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRK-LGANI--KYFDVG 306 (652)
T ss_pred HHHHHHHHHHH-hcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHH-cCCCc--eEEecc
Confidence 99999999997 543333 2224444443222 345677777888888887 57654 444444
No 57
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=87.06 E-value=4.2 Score=40.83 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=101.3
Q ss_pred cEEEEEeccCCHH----HHHHHHHcCCcc--cccccHHHHHHHHh---c-----CCCCc--eEEeeCCCCcccHHHHhhC
Q 025380 61 IRIVAVSKTKPVS----VIRQVYEAGHRC--FGENYVQEIVEKAA---Q-----LPDDL--EWHFIGNLQSNKVKPLLAG 124 (253)
Q Consensus 61 v~L~aVvK~h~~~----~i~~~~~~G~~~--fGen~vqEa~~~~~---~-----~~~~i--~~h~IG~lq~nk~~~~~~~ 124 (253)
|+=|.-++|...+ .|.++.++|++. +.+...++|..+.. . .+-|| ..|| .++-+-.++++
T Consensus 33 VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF----~~~~A~~a~~~ 108 (606)
T PRK00694 33 IQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHF----FPQAAMHVADF 108 (606)
T ss_pred EEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCC----ChHHHHHHHHh
Confidence 3334444454443 345566789887 89999999886543 2 22232 1244 33333223322
Q ss_pred CCCccEEE-EeCC----------------------HHHHHHHHHHHHhcCCCcceEEEEEeCCC----CCCccCCChhhH
Q 025380 125 VPNLAMVE-SVDN----------------------EKIAGRLNRMVETMGRKPLKVLVQVNTSG----EESKSGVEPSGC 177 (253)
Q Consensus 125 ~~~~~li~-sVds----------------------~~~a~~L~~~a~~~~~~~~~V~lqVnTG~----e~~R~Gv~p~e~ 177 (253)
+.+..+-+ .+.+ .+....+-+.|++.+. ++-|=||.|. -++|+|-.|+.+
T Consensus 109 vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~---~IRIGvN~GSL~~~i~~~yG~tpegm 185 (606)
T PRK00694 109 VDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGK---AMRIGVNHGSLSERVMQRYGDTIEGM 185 (606)
T ss_pred cCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCC---CEEEecCCcCchHHHHHHhCCCHHHH
Confidence 22222211 1122 3456667778887775 5667889875 245788777432
Q ss_pred -HHHHHHHHhcCCCeeEeE-EeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 178 -LELVKHVSQNCPNLEFCG-LMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 178 -~~l~~~i~~~~~~L~l~G-Lmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
...+++++ -|..+.+.- +.++-+.+....-+.++.|.+..++..-.|++.....+=-+|.+|-..-|+--|++|
T Consensus 186 VeSAle~~~-i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~eg~~YPLHLGVTEAG~g~~G~IKSavGIG~LL 261 (606)
T PRK00694 186 VYSALEYIE-VCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPLHLGVTEAGSGTDGIIKSAVGIGTLL 261 (606)
T ss_pred HHHHHHHHH-HHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhccCCCcCceeccccCcCCCCceeHHHHHHHHHH
Confidence 22233332 233333333 356666554444466666665554332235555555677788899999999888876
No 58
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=86.80 E-value=7.3 Score=36.67 Aligned_cols=182 Identities=18% Similarity=0.191 Sum_probs=102.8
Q ss_pred CCCcEEEEEeccCCHHH----HHHHHHcCCcc--cccccHHHHHHHHh---cCCCCc--eEEeeCCCCcccHHHHhh-CC
Q 025380 58 PDRIRIVAVSKTKPVSV----IRQVYEAGHRC--FGENYVQEIVEKAA---QLPDDL--EWHFIGNLQSNKVKPLLA-GV 125 (253)
Q Consensus 58 p~~v~L~aVvK~h~~~~----i~~~~~~G~~~--fGen~vqEa~~~~~---~~~~~i--~~h~IG~lq~nk~~~~~~-~~ 125 (253)
|-.|+=|-=+||+..+. |+++.++|++. +.|+..+.|.+... .++-|+ .+||. ..-+...++ .+
T Consensus 21 PI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~----~rla~~~~~~g~ 96 (361)
T COG0821 21 PIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFD----YRLALEAAECGV 96 (361)
T ss_pred ceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeecc----HHHHHHhhhcCc
Confidence 44455566677777643 45566789987 99999998886543 233342 24653 122222222 12
Q ss_pred CCccEEE-EeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCC----CccCCC-hhhHH-HHHHHHHhcCCCeeEeE-Ee
Q 025380 126 PNLAMVE-SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE----SKSGVE-PSGCL-ELVKHVSQNCPNLEFCG-LM 197 (253)
Q Consensus 126 ~~~~li~-sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~----~R~Gv~-p~e~~-~l~~~i~~~~~~L~l~G-Lm 197 (253)
..+.+-+ .|.+.+....+-+.|+..|+ ++-|=||.|.-. .|+|-+ |+.+. ..+..+. -+..|.|.- +.
T Consensus 97 ~k~RINPGNig~~~~v~~vVe~Ak~~g~---piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~-~~e~l~f~~i~i 172 (361)
T COG0821 97 DKVRINPGNIGFKDRVREVVEAAKDKGI---PIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAE-LLEELGFDDIKV 172 (361)
T ss_pred ceEEECCcccCcHHHHHHHHHHHHHcCC---CEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHH-HHHHCCCCcEEE
Confidence 2222322 56777888899999998886 577889988532 356543 43322 2222222 222222222 23
Q ss_pred eecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 198 TIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 198 th~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
++-+.+....-+.++.|... + .|++.....+=-||.+|....|+..|.+|
T Consensus 173 S~K~Sdv~~~v~aYr~lA~~---~--dyPLHLGvTEAG~~~~G~VkSa~alg~LL 222 (361)
T COG0821 173 SVKASDVQLMVAAYRLLAKR---C--DYPLHLGVTEAGMGFKGIVKSAAALGALL 222 (361)
T ss_pred EEEcCCHHHHHHHHHHHHHh---c--CCCcccceecccCcccceehHHHHHHHHH
Confidence 44444332233444333332 2 15555555788899999999999988765
No 59
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=86.37 E-value=9.9 Score=35.82 Aligned_cols=182 Identities=16% Similarity=0.183 Sum_probs=102.9
Q ss_pred CCCcEEEEEeccCCHHH----HHHHHHcCCcc--cccccHHHHHHHHhc---CCCCc--eEEeeCCCCcccHHHHhh-CC
Q 025380 58 PDRIRIVAVSKTKPVSV----IRQVYEAGHRC--FGENYVQEIVEKAAQ---LPDDL--EWHFIGNLQSNKVKPLLA-GV 125 (253)
Q Consensus 58 p~~v~L~aVvK~h~~~~----i~~~~~~G~~~--fGen~vqEa~~~~~~---~~~~i--~~h~IG~lq~nk~~~~~~-~~ 125 (253)
|-.|+=|.-++|+..+. |.++.++|++. +++...++|..+..- .+-|+ ..||- ....-..++ .+
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd----~~lAl~a~~~g~ 94 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFD----YRLAALAMAKGV 94 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCC----cHHHHHHHHhcc
Confidence 43444455555655533 45566789887 888888888865442 22232 12441 122222332 22
Q ss_pred CCccEEE-EeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC----CCccC-CChhhH-HHHHHHHHhcCCCeeEeEE-e
Q 025380 126 PNLAMVE-SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE----ESKSG-VEPSGC-LELVKHVSQNCPNLEFCGL-M 197 (253)
Q Consensus 126 ~~~~li~-sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e----~~R~G-v~p~e~-~~l~~~i~~~~~~L~l~GL-m 197 (253)
....+-+ .+.+.+..+.+-+.|++.+. ++-|=||.|.- +.|+| ..|+.+ ...+++++ -+..+.|.-+ .
T Consensus 95 dkiRINPGNig~~e~v~~vv~~ak~~~i---pIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~-~le~~~F~divi 170 (346)
T TIGR00612 95 AKVRINPGNIGFRERVRDVVEKARDHGK---AMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAA-ILEKLGFRNVVL 170 (346)
T ss_pred CeEEECCCCCCCHHHHHHHHHHHHHCCC---CEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHH-HHHHCCCCcEEE
Confidence 2233322 57778899999999998765 67788998852 24677 456432 22333443 3333333332 3
Q ss_pred eecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 198 TIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 198 th~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
++-+.+....-+.++.|.+. . .|+++....+==+|.+|...-|+--|++|
T Consensus 171 S~KsSdv~~~i~ayr~la~~---~--dyPLHlGVTEAG~~~~G~IKSaigig~LL 220 (346)
T TIGR00612 171 SMKASDVAETVAAYRLLAER---S--DYPLHLGVTEAGMGVKGIVKSSAGIGILL 220 (346)
T ss_pred EEEcCCHHHHHHHHHHHHhh---C--CCCceeccccCCCCCCchhHHHHHHHHHH
Confidence 45544333333444433332 2 25665555777888999999999888775
No 60
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=82.07 E-value=5.1 Score=40.42 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCCcEEEEEeccCCH----HHHHHHHHcCCcc--cccccHHHHHHHHh---cC-----CCCc--eEEeeCCCCcccHHHH
Q 025380 58 PDRIRIVAVSKTKPV----SVIRQVYEAGHRC--FGENYVQEIVEKAA---QL-----PDDL--EWHFIGNLQSNKVKPL 121 (253)
Q Consensus 58 p~~v~L~aVvK~h~~----~~i~~~~~~G~~~--fGen~vqEa~~~~~---~~-----~~~i--~~h~IG~lq~nk~~~~ 121 (253)
|-.|+=|.-++|... ..|.++.++|++. +.+...+||..+.. .+ +-|+ ..||- ++-.-.+
T Consensus 26 PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~----~~~A~~a 101 (611)
T PRK02048 26 PIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFN----PKVADVA 101 (611)
T ss_pred ceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC----cHHHHHH
Confidence 433444444445444 3345566789887 89999999986543 22 2242 12542 2222223
Q ss_pred hhCCCCccEEE-EeCC----------------------HHHHHHHHHHHHhcCCCcceEEEEEeCCC----CCCccCCCh
Q 025380 122 LAGVPNLAMVE-SVDN----------------------EKIAGRLNRMVETMGRKPLKVLVQVNTSG----EESKSGVEP 174 (253)
Q Consensus 122 ~~~~~~~~li~-sVds----------------------~~~a~~L~~~a~~~~~~~~~V~lqVnTG~----e~~R~Gv~p 174 (253)
++.+.+..+-+ .+.+ .+....+-+.|++.+. ++-|=||.|. -++|.|-.|
T Consensus 102 ~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~---~iRIGvN~GSL~~~i~~~yg~tp 178 (611)
T PRK02048 102 AQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHT---AIRIGVNHGSLSDRIMSRYGDTP 178 (611)
T ss_pred HHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCC---CEEEecCCcCchHHHHHHhCCCh
Confidence 22222222211 1111 1445556677887775 5677889875 245789777
Q ss_pred hhH-HHHHHHHHhcCCCeeEeE-EeeecCCCCCCcHHHHHHHHHHHHHHHHH---hCCCCCCCeeeccCcchHHHHHHcC
Q 025380 175 SGC-LELVKHVSQNCPNLEFCG-LMTIGMPDYTSTPENFKTLAKCRSEVCKA---LGIPEEQCDLSMGMSGDFELAVRNT 249 (253)
Q Consensus 175 ~e~-~~l~~~i~~~~~~L~l~G-Lmth~a~~~~~~~~~F~~l~~~~~~l~~~---~~~~~~~~~LSmGMS~D~~~Ai~~G 249 (253)
+.+ ...+++++ -|..+.+.- +.++-+.+....-..+ +.+.+.+.+. |++.....+-..|.++-...|+..|
T Consensus 179 e~mVeSAle~~~-i~e~~~f~diviS~KsS~~~~~V~Ay---RlLa~~l~~~g~dyPLHLGvTEAG~~edg~IKSAigiG 254 (611)
T PRK02048 179 EGMVESCMEFLR-ICVEEHFTDVVISIKASNTVVMVRTV---RLLVAVMEAEGMHYPLHLGVTEAGDGEDGRIKSAVGIG 254 (611)
T ss_pred HHHHHHHHHHHH-HHHHCCCCcEEEEEEeCCcHHHHHHH---HHHHHHHHhcCCCCceEEEEecCCCCcCceehhHHHHH
Confidence 432 22333332 233333333 3466655443223444 4444444331 3332222344556666789999999
Q ss_pred CCC
Q 025380 250 LLL 252 (253)
Q Consensus 250 s~~ 252 (253)
++|
T Consensus 255 aLL 257 (611)
T PRK02048 255 ALL 257 (611)
T ss_pred HHH
Confidence 876
No 61
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=3 Score=35.10 Aligned_cols=38 Identities=39% Similarity=0.489 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCCCccCCCh--hhHHHHHHHHHhcCCCeeEeEEee
Q 025380 156 KVLVQVNTSGEESKSGVEP--SGCLELVKHVSQNCPNLEFCGLMT 198 (253)
Q Consensus 156 ~V~lqVnTG~e~~R~Gv~p--~e~~~l~~~i~~~~~~L~l~GLmt 198 (253)
+|+|=|||. +|+|++| +.+..|++... -.++.+.|+=+
T Consensus 26 kVlLIVNtA---SkCGfTpQYegLe~Ly~ky~--~~Gf~VLgFPc 65 (162)
T COG0386 26 KVLLIVNTA---SKCGFTPQYEGLEALYKKYK--DKGFEVLGFPC 65 (162)
T ss_pred cEEEEEEcc---cccCCcHhHHHHHHHHHHHh--hCCcEEEeccc
Confidence 399999997 9999999 67888888875 47899988755
No 62
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=77.99 E-value=9.7 Score=36.08 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=101.6
Q ss_pred CCCcEEEEEeccCCHHH----HHHHHHcCCcc--cccccHHHHHHHHh---cCCCCc--eEEeeCCCCcccHHHHhh-CC
Q 025380 58 PDRIRIVAVSKTKPVSV----IRQVYEAGHRC--FGENYVQEIVEKAA---QLPDDL--EWHFIGNLQSNKVKPLLA-GV 125 (253)
Q Consensus 58 p~~v~L~aVvK~h~~~~----i~~~~~~G~~~--fGen~vqEa~~~~~---~~~~~i--~~h~IG~lq~nk~~~~~~-~~ 125 (253)
|-.|+=|.-++|+..+. |.++.++|++. +++...++|..+.. ..+-|+ ..|| ...-+-.+++ .+
T Consensus 27 Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHF----d~~lAl~a~~~G~ 102 (360)
T PRK00366 27 PIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHF----DYRLALAAAEAGA 102 (360)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCC----CHHHHHHHHHhCC
Confidence 43344455555655533 45566789887 88888888886544 233342 1244 3233333332 12
Q ss_pred CCccEEE-EeCC-HHHHHHHHHHHHhcCCCcceEEEEEeCCCC----CCccCC-ChhhH-HHHHHHHHhcCCCeeEeEE-
Q 025380 126 PNLAMVE-SVDN-EKIAGRLNRMVETMGRKPLKVLVQVNTSGE----ESKSGV-EPSGC-LELVKHVSQNCPNLEFCGL- 196 (253)
Q Consensus 126 ~~~~li~-sVds-~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e----~~R~Gv-~p~e~-~~l~~~i~~~~~~L~l~GL- 196 (253)
....+-+ .+.+ .+.++.+-+.|++.+. ++-|=||.|.- ..|+|- .|+.+ ...+++++ -+..+.|.-+
T Consensus 103 ~~iRINPGNig~~~~~v~~vv~~ak~~~i---pIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~-~le~~~f~~iv 178 (360)
T PRK00366 103 DALRINPGNIGKRDERVREVVEAAKDYGI---PIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAK-ILEELGFDDIK 178 (360)
T ss_pred CEEEECCCCCCchHHHHHHHHHHHHHCCC---CEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHH-HHHHCCCCcEE
Confidence 2222211 3566 7788899999988765 67788998852 235675 44332 22333443 3333444333
Q ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 197 MTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 197 mth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.++-+.+....-+.++.|.+.. .|+++....+==+|.+|...-|+--|++|
T Consensus 179 iS~KsS~v~~~i~ayrlla~~~-----dyPLHlGvTEAG~~~~G~iKSa~gig~LL 229 (360)
T PRK00366 179 ISVKASDVQDLIAAYRLLAKRC-----DYPLHLGVTEAGMGFKGTVKSAAGLGALL 229 (360)
T ss_pred EEEEcCCHHHHHHHHHHHHhcC-----CCCceecccCCCCCCCceehhHHHHHHHH
Confidence 3455444333334444443322 25665555777888899999999888775
No 63
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=76.13 E-value=10 Score=38.99 Aligned_cols=167 Identities=13% Similarity=0.158 Sum_probs=84.2
Q ss_pred HHHHHHcCCcc--cccccHHHHHHHHh---c-----CCCCc--eEEeeCCCCcccHHHHhhCCCCccEEE--EeCC----
Q 025380 75 IRQVYEAGHRC--FGENYVQEIVEKAA---Q-----LPDDL--EWHFIGNLQSNKVKPLLAGVPNLAMVE--SVDN---- 136 (253)
Q Consensus 75 i~~~~~~G~~~--fGen~vqEa~~~~~---~-----~~~~i--~~h~IG~lq~nk~~~~~~~~~~~~li~--sVds---- 136 (253)
|.++.++|++. +.+...+||..+.. . .+-|+ ..|| .++-+-.+++.+.+..+-+ -.|.
T Consensus 116 i~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF----~~~~Al~a~~~vdkiRINPGN~~~~~k~F 191 (733)
T PLN02925 116 VMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHF----APSVALRVAECFDKIRVNPGNFADRRAQF 191 (733)
T ss_pred HHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCC----CHHHHHHHHHhcCCeEECCcccCCccccc
Confidence 45566789887 99999999986543 2 22232 1244 3333333332222222211 1111
Q ss_pred -------H----------HHHHHHHHHHHhcCCCcceEEEEEeCCC----CCCccCCChhhH-HHHHHHHHhcCCCeeEe
Q 025380 137 -------E----------KIAGRLNRMVETMGRKPLKVLVQVNTSG----EESKSGVEPSGC-LELVKHVSQNCPNLEFC 194 (253)
Q Consensus 137 -------~----------~~a~~L~~~a~~~~~~~~~V~lqVnTG~----e~~R~Gv~p~e~-~~l~~~i~~~~~~L~l~ 194 (253)
. +....|-+.|++.+. ++-|=||.|. -++|.|-.|+.+ ...+++++ -|..+.+.
T Consensus 192 ~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~---~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~-i~e~~~f~ 267 (733)
T PLN02925 192 EKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGR---AMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR-ICRKLDYH 267 (733)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHCCC---CEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHH-HHHHCCCC
Confidence 1 122235566777765 5677889875 245788777432 22333333 33333333
Q ss_pred E-EeeecCCCCCCcHHHHHHHHHHHHHHHHH---hCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 195 G-LMTIGMPDYTSTPENFKTLAKCRSEVCKA---LGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 195 G-Lmth~a~~~~~~~~~F~~l~~~~~~l~~~---~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
- +.++-+.+....-..+ +.+...|.+. |++.....+=..|-++-+..|+..|++|
T Consensus 268 diviS~KsSn~~~~V~Ay---R~La~~L~~~g~~yPLhLgvTEAG~~edg~IKSAigiGaLL 326 (733)
T PLN02925 268 NFVFSMKASNPVVMVQAY---RLLVAEMYVLGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLL 326 (733)
T ss_pred cEEEEEEcCChHHHHHHH---HHHHHHHHhcCCCCceEEEEecCCCCcCceehhHHHHHHHH
Confidence 3 3466655443333445 4444444332 2222212233445556689999999876
No 64
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=69.02 E-value=43 Score=27.95 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=40.4
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEE
Q 025380 129 AMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGL 196 (253)
Q Consensus 129 ~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GL 196 (253)
.....++..+.+..|-+.+.+.+. +|.+= | =.++.+..+.+.+.+.+|++++.|.
T Consensus 24 ~~~~r~~g~dl~~~ll~~~~~~~~---~v~ll---G-------~~~~~~~~~~~~l~~~yp~l~i~g~ 78 (171)
T cd06533 24 PLPERVTGSDLMPALLELAAQKGL---RVFLL---G-------AKPEVLEKAAERLRARYPGLKIVGY 78 (171)
T ss_pred CCCcccCcHHHHHHHHHHHHHcCC---eEEEE---C-------CCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 356788899999888888876554 44442 3 3566777777777657899999885
No 65
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=64.97 E-value=84 Score=32.15 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc-CCHHHHHHHHHcCCccc-cc---------ccHHHHHHHHhc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT-KPVSVIRQVYEAGHRCF-GE---------NYVQEIVEKAAQ 100 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~-h~~~~i~~~~~~G~~~f-Ge---------n~vqEa~~~~~~ 100 (253)
.++.+..|++.+.........++.++ ...++..+-=+ .+...+..++..|+..| ++ ||+.|..+....
T Consensus 102 ~lERYaaqI~F~~~fs~s~~~rF~~q-R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~ 180 (637)
T TIGR03693 102 LLDRYAAQIEFIEADADSGALKFELS-RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE 180 (637)
T ss_pred HHHHHHHHHHHHHHhccCchhhhhhh-hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH
Confidence 45677788877777766555555544 22344333332 34455577788998887 44 445566655555
Q ss_pred CCCCceEEeeCCCCcccHHHHhhCCCCccEEEE-eC--CHHHHHHHHHHHHhcCC
Q 025380 101 LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVES-VD--NEKIAGRLNRMVETMGR 152 (253)
Q Consensus 101 ~~~~i~~h~IG~lq~nk~~~~~~~~~~~~li~s-Vd--s~~~a~~L~~~a~~~~~ 152 (253)
+.+++..-.|+.-..+.+..++ +.+|++.. .| +...+.+++++|.+.++
T Consensus 181 ~n~~v~v~~i~~~~~~dl~ev~---~~~DiVi~vsDdy~~~~Lr~lN~acvkegk 232 (637)
T TIGR03693 181 TDDALLVQEIDFAEDQHLHEAF---EPADWVLYVSDNGDIDDLHALHAFCKEEGK 232 (637)
T ss_pred hCCCCceEeccCCcchhHHHhh---cCCcEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 5444444555554456777777 46888554 45 45679999999998885
No 66
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=57.20 E-value=62 Score=27.68 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=43.4
Q ss_pred cccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 86 FGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 86 fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
.|.++++.+......+.+.+.+..+ ..+.+..+..++ ..+++ +.++|+.+.-..|++.|.+.+.
T Consensus 72 iG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~---~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 72 VGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI---NNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred CCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 5777887777766655444444433 344444455555 45777 5688999999999999998875
No 67
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=56.66 E-value=25 Score=29.88 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=38.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEeeecCC
Q 025380 130 MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 130 li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a~ 202 (253)
...-|...+++..|-+.+...+. +|.+= | =.|+.+..+.+.+.+.+|++++.|. ++..
T Consensus 27 ~~~Rv~G~dl~~~l~~~~~~~~~---~vfll---G-------~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f 84 (177)
T TIGR00696 27 QQSRVAGPDLMEELCQRAGKEKL---PIFLY---G-------GKPDVLQQLKVKLIKEYPKLKIVGA--FGPL 84 (177)
T ss_pred CCCccChHHHHHHHHHHHHHcCC---eEEEE---C-------CCHHHHHHHHHHHHHHCCCCEEEEE--CCCC
Confidence 34456677788777777765543 44442 4 3566677777877657899999885 5544
No 68
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=53.76 E-value=91 Score=29.28 Aligned_cols=48 Identities=6% Similarity=0.013 Sum_probs=39.0
Q ss_pred eCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 134 VDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 134 Vds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
.-+.++++.|.+.+.+.+. -.+++.|.+...=.|++.+++..+++.+.
T Consensus 40 ~lt~eqLr~LAdiaekyg~----g~i~lTtrQnI~l~~I~~edl~~i~~~L~ 87 (341)
T TIGR02066 40 LLSVDTLRKLCDIADKYSD----GYLRWTIRNNVEFLVSDESKIQPLIDELE 87 (341)
T ss_pred ccCHHHHHHHHHHHHHhCC----CeEEEeccCCEEEecCCHHHHHHHHHHHH
Confidence 6789999999999999875 24666676556667999999999999886
No 69
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=52.13 E-value=1.8e+02 Score=27.09 Aligned_cols=126 Identities=12% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCCCcccHHHHhh-CCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC
Q 025380 111 GNLQSNKVKPLLA-GVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCP 189 (253)
Q Consensus 111 G~lq~nk~~~~~~-~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~ 189 (253)
|......++.+.+ .++.+.+....+..+.+...-+.+++.|. .|.+.+-.+ +..+|+.+.++++.+. .+
T Consensus 86 g~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~---~v~~~l~~s-----~~~~~e~l~~~a~~~~-~~- 155 (333)
T TIGR03217 86 GIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGM---DTVGFLMMS-----HMTPPEKLAEQAKLME-SY- 155 (333)
T ss_pred CccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCC---eEEEEEEcc-----cCCCHHHHHHHHHHHH-hc-
Confidence 4444556666664 23323334445555556666666776664 343333322 2467888888888876 54
Q ss_pred CeeEeEEe-eecCCCCCCcHHHHHHHHHHHHHHHH--HhCCCCCCCeeeccCcchHHHHHHcCCC
Q 025380 190 NLEFCGLM-TIGMPDYTSTPENFKTLAKCRSEVCK--ALGIPEEQCDLSMGMSGDFELAVRNTLL 251 (253)
Q Consensus 190 ~L~l~GLm-th~a~~~~~~~~~F~~l~~~~~~l~~--~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~ 251 (253)
+.....|. |.+...++++.+.|..+++ .+.. ..|+..+ +.+.||+.+.+. |++.|+.
T Consensus 156 Ga~~i~i~DT~G~~~P~~v~~~v~~l~~---~l~~~i~ig~H~H-nnlGla~ANsla-Ai~aGa~ 215 (333)
T TIGR03217 156 GADCVYIVDSAGAMLPDDVRDRVRALKA---VLKPETQVGFHAH-HNLSLAVANSIA-AIEAGAT 215 (333)
T ss_pred CCCEEEEccCCCCCCHHHHHHHHHHHHH---hCCCCceEEEEeC-CCCchHHHHHHH-HHHhCCC
Confidence 34433332 2333344444455544443 2210 1222210 468888888764 7889875
No 70
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.57 E-value=1.7e+02 Score=26.90 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=42.0
Q ss_pred EEeccCCHHHHHHHHHcCCcc-----cccccHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhh
Q 025380 65 AVSKTKPVSVIRQVYEAGHRC-----FGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLA 123 (253)
Q Consensus 65 aVvK~h~~~~i~~~~~~G~~~-----fGen~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~ 123 (253)
--+-.+..+++.+++++|++. |+...+.++..+.......+.+..+|.+..+.+.+++.
T Consensus 199 I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~ 262 (288)
T PRK07428 199 IEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAE 262 (288)
T ss_pred EEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 345678889999999999887 55555666665433222345668889999888888874
No 71
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=43.49 E-value=1.1e+02 Score=27.04 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=43.1
Q ss_pred ccccccHHHHHHHHhcCCCCceEE-eeCCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 85 CFGENYVQEIVEKAAQLPDDLEWH-FIGNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 85 ~fGen~vqEa~~~~~~~~~~i~~h-~IG~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
..|-.+++.+......+.+.+... +-..+....+..++ +.+++ +.+.|+.+.-..|++.|.+.+.
T Consensus 82 dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~---~~~DiVi~~~D~~~~r~~ln~~~~~~~i 148 (245)
T PRK05690 82 TIGQPKVESARAALARINPHIAIETINARLDDDELAALI---AGHDLVLDCTDNVATRNQLNRACFAAKK 148 (245)
T ss_pred hCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH---hcCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 456777777776555554333222 22555555556666 45787 5689999998899999998875
No 72
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=42.27 E-value=61 Score=29.02 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCCCcccHHHHhhCCCCccE-EEEeC-----------CHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCc-cCCChhhH
Q 025380 111 GNLQSNKVKPLLAGVPNLAM-VESVD-----------NEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESK-SGVEPSGC 177 (253)
Q Consensus 111 G~lq~nk~~~~~~~~~~~~l-i~sVd-----------s~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R-~Gv~p~e~ 177 (253)
+....+.++.+++ ++++ |.||. ....+..|.++|...|- +.=|+.-+|.| ..+ .+++++++
T Consensus 47 dg~p~a~vka~Ae---k~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA-~aLvlcPlNd~--s~~~~~vr~~~l 120 (272)
T COG4130 47 DGTPAAEVKALAE---KAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGA-KALVLCPLNDG--SWPGTAVRREDL 120 (272)
T ss_pred CCCCHHHHHHHHH---HcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCC-ceEEEEeccCC--CCCCcccchHHH
Confidence 6677888998885 4676 56654 33456778888888886 88899999987 444 56677777
Q ss_pred HHHHHHHH
Q 025380 178 LELVKHVS 185 (253)
Q Consensus 178 ~~l~~~i~ 185 (253)
...+..++
T Consensus 121 v~AlkaLk 128 (272)
T COG4130 121 VEALKALK 128 (272)
T ss_pred HHHHHHhh
Confidence 66655554
No 73
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=40.16 E-value=1.1e+02 Score=25.69 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=46.0
Q ss_pred EeccCCHHHHHHHHHcCCcc-----cccccHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhhCCCCccE-EEEeCCH
Q 025380 66 VSKTKPVSVIRQVYEAGHRC-----FGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAM-VESVDNE 137 (253)
Q Consensus 66 VvK~h~~~~i~~~~~~G~~~-----fGen~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~~~~~~~l-i~sVds~ 137 (253)
.+-....+++.+++++|++. |....+.++..........+..-.-|.+..+.+.+.++ .++ ..++.++
T Consensus 84 ~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~----~gvD~isvg~~ 157 (169)
T PF01729_consen 84 EVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAK----TGVDVISVGSL 157 (169)
T ss_dssp EEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHH----TT-SEEEECHH
T ss_pred EEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHh----cCCCEEEcChh
Confidence 44667788899999999876 77777777776554444445556669999999999885 443 4455543
No 74
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=39.34 E-value=62 Score=34.19 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=47.8
Q ss_pred EeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 108 HFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 108 h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
+|.+++|.+..-.+. ..+--..=+.+++..|.+.|++-+. . +++.+++...=.|++.+++.++++.+.
T Consensus 554 ~~~~n~Qk~g~~~v~-----~~~p~G~lt~~ql~~ia~iA~kyg~-~----~~iT~~Q~i~L~~i~~~~l~~v~~~L~ 621 (847)
T PRK14989 554 NFLANIQKDGTYSVI-----PRSAGGEITPEGLMAVGRIAREFNL-Y----TKITGSQRIGLFGAQKDDLPEIWRQLI 621 (847)
T ss_pred ccccccccCCeEEEE-----EEcCCcEeCHHHHHHHHHHHHHHCC-c----EEEcCCCceEeCCCCHHHHHHHHHHHH
Confidence 355666654322111 3334456789999999999998774 2 688887555557889999999999885
No 75
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.08 E-value=1.3e+02 Score=28.66 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=50.1
Q ss_pred EEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEeeecCC
Q 025380 132 ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 132 ~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a~ 202 (253)
-+||-..+++++++.++-.|+ -+..||. | ++--+.-|- +.++++.++ .+|++.+.-+.|++-.
T Consensus 139 y~Vd~eyLl~w~~kVa~~Kgk-glEaHlD---G--qGEP~lYP~-l~~lVqalk-~~~~v~vVSmQTng~~ 201 (414)
T COG2100 139 YVVDPEYLLEWFEKVARFKGK-GLEAHLD---G--QGEPLLYPH-LVDLVQALK-EHKGVEVVSMQTNGVL 201 (414)
T ss_pred eEecHHHHHHHHHHHHhhhCC-CeEEEec---C--CCCCccchh-HHHHHHHHh-cCCCceEEEEeeCcee
Confidence 457778889999999998887 7777765 4 555566664 788899998 9999999999998753
No 76
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=38.40 E-value=3.4e+02 Score=25.36 Aligned_cols=126 Identities=13% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCCCcccHHHHhh-CCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCC
Q 025380 111 GNLQSNKVKPLLA-GVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCP 189 (253)
Q Consensus 111 G~lq~nk~~~~~~-~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~ 189 (253)
|.-....++.+.+ .+..+.+....+..+.+...-+.+++.|. .|.+.+-.+ ...+|+++.++++.+. .++
T Consensus 87 g~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~---~v~~~l~~a-----~~~~~e~l~~~a~~~~-~~G 157 (337)
T PRK08195 87 GIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGM---DTVGFLMMS-----HMAPPEKLAEQAKLME-SYG 157 (337)
T ss_pred CcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCC---eEEEEEEec-----cCCCHHHHHHHHHHHH-hCC
Confidence 3333455666664 22223333445555555556666777664 344443332 2347888888888876 543
Q ss_pred CeeEeEEe-eecCCCCCCcHHHHHHHHHHHHHHH--HHhCCCCCCCeeeccCcchHHHHHHcCCC
Q 025380 190 NLEFCGLM-TIGMPDYTSTPENFKTLAKCRSEVC--KALGIPEEQCDLSMGMSGDFELAVRNTLL 251 (253)
Q Consensus 190 ~L~l~GLm-th~a~~~~~~~~~F~~l~~~~~~l~--~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~ 251 (253)
.....|. |.+...+.++...|+.++ +.+. -..|+..+ +.+.||+.+.+ .|++.|+.
T Consensus 158 -a~~i~i~DT~G~~~P~~v~~~v~~l~---~~l~~~i~ig~H~H-nnlGla~ANsl-aAi~aGa~ 216 (337)
T PRK08195 158 -AQCVYVVDSAGALLPEDVRDRVRALR---AALKPDTQVGFHGH-NNLGLGVANSL-AAVEAGAT 216 (337)
T ss_pred -CCEEEeCCCCCCCCHHHHHHHHHHHH---HhcCCCCeEEEEeC-CCcchHHHHHH-HHHHhCCC
Confidence 3332222 222223444444444444 3331 01222210 46888888866 47889875
No 77
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.38 E-value=2.1e+02 Score=23.26 Aligned_cols=69 Identities=10% Similarity=0.256 Sum_probs=52.4
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEeeecCC
Q 025380 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 128 ~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a~ 202 (253)
++++.+=+|.+.++-+.+..++..+ +|.|----|.+.++.|-+++.+.+.+.... ...++-+ +|-+++.
T Consensus 3 vgiVIVSHS~~lAeGv~~li~em~~---dv~i~~~gGtddg~iGTs~~~I~~aI~~~~-~ad~~li--f~DlGSA 71 (129)
T COG3412 3 VGIVIVSHSKELAEGVAELIREMAG---DVPITYAGGTDDGQIGTSFEKIMEAIEKAN-EADHVLV--FYDLGSA 71 (129)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhC---CCceEEecCCCCCCcCcCHHHHHHHHHhcc-ccCceEE--EEecchh
Confidence 6788999999999999999988753 777777777779999999987777766544 4455444 5666664
No 78
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=38.32 E-value=2e+02 Score=22.66 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=41.6
Q ss_pred cccccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 84 RCFGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 84 ~~fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
...|.++++-+......+.+.+.|..+ ..+.+......+ ..+++ +.+.|+.+.-..|++.|.+.+.
T Consensus 48 ~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~---~~~diVi~~~d~~~~~~~l~~~~~~~~i 115 (143)
T cd01483 48 ADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNLDDFL---DGVDLVIDAIDNIAVRRALNRACKELGI 115 (143)
T ss_pred hHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 446778887777665555433444433 233332223444 45777 5588999888899999998775
No 79
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=38.05 E-value=61 Score=30.83 Aligned_cols=182 Identities=18% Similarity=0.247 Sum_probs=87.4
Q ss_pred CCCcEEEEEeccCCHHH----HHHHHHcCCcc--cccccHHHHHHHHh---c-----CCCCc--eEEeeCCCCcccHHHH
Q 025380 58 PDRIRIVAVSKTKPVSV----IRQVYEAGHRC--FGENYVQEIVEKAA---Q-----LPDDL--EWHFIGNLQSNKVKPL 121 (253)
Q Consensus 58 p~~v~L~aVvK~h~~~~----i~~~~~~G~~~--fGen~vqEa~~~~~---~-----~~~~i--~~h~IG~lq~nk~~~~ 121 (253)
|-.|+=|.-++|...+. |.++.++|++. +++...++|..+.. . .+-|+ ..|| ...-+-.+
T Consensus 16 PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHF----d~~lAl~a 91 (359)
T PF04551_consen 16 PISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHF----DYRLALEA 91 (359)
T ss_dssp --EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEEST----TCHHHHHH
T ss_pred CEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCC----CHHHHHHH
Confidence 44444455555555533 45566789987 88888888886543 2 22242 1244 32323333
Q ss_pred hhCCCCccEEE-Ee--------CC-HHHHHHHHHHHHhcCCCcceEEEEEeCCCCC----CccCCChhhH-HHHHHHHHh
Q 025380 122 LAGVPNLAMVE-SV--------DN-EKIAGRLNRMVETMGRKPLKVLVQVNTSGEE----SKSGVEPSGC-LELVKHVSQ 186 (253)
Q Consensus 122 ~~~~~~~~li~-sV--------ds-~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~----~R~Gv~p~e~-~~l~~~i~~ 186 (253)
++++....+-| .+ .+ .+-.+.+-+.|++.+. ++-|=||.|.-. .|.|-.|+.+ ...+++++
T Consensus 92 ~~~v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~i---pIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~- 167 (359)
T PF04551_consen 92 IEAVDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGI---PIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVR- 167 (359)
T ss_dssp HHC-SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT----EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHH-
T ss_pred HHHhCeEEECCCcccccccccccchHHHHHHHHHHHHHCCC---CEEEecccccCcHHHHhhccchHHHHHHHHHHHHH-
Confidence 32212222211 23 66 8888999999998775 677889988522 2356555432 22333443
Q ss_pred cCCCeeEeEE-eeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 187 NCPNLEFCGL-MTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 187 ~~~~L~l~GL-mth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
-+..+.|.-+ .++-+.+.....+.++.+.+..+ |++.....+=-++.++-...|+..|++|
T Consensus 168 ~le~~~f~~iviSlKsSdv~~~i~ayr~la~~~d-----yPLHLGvTEAG~~~~g~IkSsigiG~LL 229 (359)
T PF04551_consen 168 ILEELGFDDIVISLKSSDVPETIEAYRLLAERMD-----YPLHLGVTEAGTGEDGTIKSSIGIGALL 229 (359)
T ss_dssp HHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH-------S-EEEEBSSEESCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCcEEEEEEeCChHHHHHHHHHHHHhcC-----CCeEEeecCCCCcccchhHHHHHHHHHH
Confidence 3333333333 23443332222344433333222 4444333555566677788888877764
No 80
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=36.04 E-value=73 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEeeecCC
Q 025380 156 KVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 156 ~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a~ 202 (253)
.+|++...+ ..++.++++.+. ..|.|++.-||-|.|-
T Consensus 132 r~HlRcEvs---------~~~~l~~~e~~~-~~p~v~LiSlMDH~PG 168 (377)
T COG3454 132 RLHLRCEVS---------HPATLPLFEDLM-DHPRVKLISLMDHTPG 168 (377)
T ss_pred ceeeeeecC---------ChhHHHHHHHHh-cCCCeeEEEecCCCCC
Confidence 467776665 234566666666 7899999999999885
No 81
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=35.39 E-value=1.4e+02 Score=31.16 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=40.0
Q ss_pred EeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 133 SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 133 sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
..-+.+++..|.+.+++.+. . .+++.+++...=.|+++++++++++.+.
T Consensus 563 G~lt~~ql~~la~ia~~yg~-~---~i~iT~~Q~i~l~gi~~~~l~~i~~~L~ 611 (785)
T TIGR02374 563 GRTNPEQLRTIANIAEAYSI-P---YVKITGGQRLDLFGAKKDDLPNIWKDLK 611 (785)
T ss_pred cccCHHHHHHHHHHHHHhCC-C---eEEEcCCceEEECCCCHHHHHHHHHHHH
Confidence 45578999999999998875 2 5788887555568999999999999886
No 82
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=34.84 E-value=57 Score=22.59 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 136 NEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 136 s~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
+.+++..|.+.+++.+. -.|++-+.+..-=.|++++++.++++.+.
T Consensus 22 ~~~~l~~la~ia~~yg~----~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGD----GEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EHHHHHHHHHHHHHHST----SEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC----CeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 56678888888887663 45666665445556778888888887775
No 83
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.47 E-value=21 Score=31.02 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCccEEEEeCC--------------HHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC
Q 025380 125 VPNLAMVESVDN--------------EKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 190 (253)
Q Consensus 125 ~~~~~li~sVds--------------~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~ 190 (253)
+..+.+..+++. .+.+..+-+.+++.|. .+ .++. +.-+..+|+++.++++.+. .+ +
T Consensus 81 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v----~~~~---~~~~~~~~~~~~~~~~~~~-~~-g 150 (237)
T PF00682_consen 81 IDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY-EV----AFGC---EDASRTDPEELLELAEALA-EA-G 150 (237)
T ss_dssp SSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EE----EEEE---TTTGGSSHHHHHHHHHHHH-HH-T
T ss_pred CCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ce----EeCc---cccccccHHHHHHHHHHHH-Hc-C
Q ss_pred eeEeEEe-eecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCC
Q 025380 191 LEFCGLM-TIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLL 251 (253)
Q Consensus 191 L~l~GLm-th~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~ 251 (253)
.....|. |.+...|..+...|+.+++....+.=.+... +.+.||+.+ ...|++.|+.
T Consensus 151 ~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~H---nd~Gla~An-~laA~~aGa~ 208 (237)
T PF00682_consen 151 ADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAH---NDLGLAVAN-ALAALEAGAD 208 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEB---BTTS-HHHH-HHHHHHTT-S
T ss_pred CeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEec---CCccchhHH-HHHHHHcCCC
No 84
>TIGR03619 F420_Rv2161c probable F420-dependent oxidoreductase, Rv2161c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a domain found in a distinctive subset of bacterial luciferase homologs, found only in F420-biosynthesizing members of the Actinobacteria.
Probab=32.26 E-value=93 Score=27.47 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEe-ccCCH-HHH----HHHHHcCCccc
Q 025380 41 RSVIQRVHQAAERSSRPPDRIRIVAVS-KTKPV-SVI----RQVYEAGHRCF 86 (253)
Q Consensus 41 ~~i~~~i~~~~~~~~r~p~~v~L~aVv-K~h~~-~~i----~~~~~~G~~~f 86 (253)
......+.+.+++.||+|..+.+.+.. -..|. +++ ....++|++.|
T Consensus 191 ~~~~~~~~~~~~~~Gr~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~G~~~~ 242 (246)
T TIGR03619 191 AAAVARLRDLAAAAGRDPDAVEVVLVRTDPDGDADADAEDLAAYADLGVTRL 242 (246)
T ss_pred HHHHHHHHHHHHHcCCCccceeEEeeccccCCCHHHHHHHHHHHHHcCCcEE
Confidence 344455666777889988887766652 12332 223 33446777765
No 85
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=31.73 E-value=1.5e+02 Score=26.10 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=43.6
Q ss_pred cccccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 84 RCFGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 84 ~~fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
...|..+++.+......+.+.+....+ ..+..+.+..++ +.+++ +...|+++.-..|++.|.+.+.
T Consensus 73 ~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~---~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 73 ANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALI---AEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred hhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh---hcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 346777777777665555433322222 445545556666 45887 5588999999999999998875
No 86
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=31.54 E-value=2.6e+02 Score=27.61 Aligned_cols=70 Identities=10% Similarity=0.235 Sum_probs=51.5
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCC--CccCCChhhHHHHHHHHHhcCCCeeEeEEeeecC
Q 025380 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE--SKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM 201 (253)
Q Consensus 128 ~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~--~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a 201 (253)
++++.+=||.++++-+.+.+.+... ..+|.|-.--|.++ +.+|.+++.+.+.++.+. ...++-+ ||=+++
T Consensus 2 v~iviVSHs~~la~g~~~l~~qm~~-~~~v~i~~agG~~d~~~~~Gt~~~~i~~ai~~~~-~~~gv~v--~~DlGS 73 (473)
T PRK11377 2 VNLVIVSHSARLGEGVGELARQMLM-SDGCKLAIAAGIDDPQNPIGTDAVKVMEAIESVA-DADHVLV--MMDMGS 73 (473)
T ss_pred ceEEEEECcHHHHHHHHHHHHHhcC-CCCceEEEecCCCCCCCCCCCCHHHHHHHHHhcc-CCCCEEE--EEecch
Confidence 4688889999999999999988732 33677777766567 899999988888877775 5444443 444554
No 87
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=31.19 E-value=4e+02 Score=24.05 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHcCCcc--cccccHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhh
Q 025380 69 TKPVSVIRQVYEAGHRC--FGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLA 123 (253)
Q Consensus 69 ~h~~~~i~~~~~~G~~~--fGen~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~ 123 (253)
.|..+++.++.++|+++ ||--++++.......++.++.+..+|.+..+.+..+++
T Consensus 189 v~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~ 245 (268)
T cd01572 189 VETLEQLKEALEAGADIIMLDNMSPEELREAVALLKGRVLLEASGGITLENIRAYAE 245 (268)
T ss_pred ECCHHHHHHHHHcCCCEEEECCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHH
Confidence 47778888888999998 44445554444444343234457789999999988885
No 88
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.41 E-value=1.2e+02 Score=25.20 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=39.0
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEee
Q 025380 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMT 198 (253)
Q Consensus 128 ~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmt 198 (253)
..+.+.|+..+.+..|-+.+...+. +|.+= | =.++.+..+...+.+.+|+|++.|.+.
T Consensus 25 ~~~~~rv~g~dl~~~l~~~~~~~~~---~ifll---G-------~~~~~~~~~~~~l~~~yP~l~ivg~~~ 82 (172)
T PF03808_consen 25 RPLPERVTGSDLFPDLLRRAEQRGK---RIFLL---G-------GSEEVLEKAAANLRRRYPGLRIVGYHH 82 (172)
T ss_pred CCCCcccCHHHHHHHHHHHHHHcCC---eEEEE---e-------CCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3445778888888888887776554 34432 3 345666777777765788999888754
No 89
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=29.94 E-value=4.1e+02 Score=23.87 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=23.0
Q ss_pred HHHHHHHHHhcCCCcceEEEEEeCCCCC-CccCCChhhHHHHHHHHH
Q 025380 140 AGRLNRMVETMGRKPLKVLVQVNTSGEE-SKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 140 a~~L~~~a~~~~~~~~~V~lqVnTG~e~-~R~Gv~p~e~~~l~~~i~ 185 (253)
+...-+.+++.|. .+.+.|.-..|.+. ++ .+++.+.++++.+.
T Consensus 116 ~~~~v~~ak~~G~-~v~~~i~~~f~~~~~~~--~~~~~~~~~~~~~~ 159 (274)
T cd07938 116 FEPVAELAKAAGL-RVRGYVSTAFGCPYEGE--VPPERVAEVAERLL 159 (274)
T ss_pred HHHHHHHHHHCCC-eEEEEEEeEecCCCCCC--CCHHHHHHHHHHHH
Confidence 3344456666665 54444444443211 23 25677777777776
No 90
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=29.69 E-value=1.5e+02 Score=28.01 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHh---cCCCeeEeEEeeecCCCC
Q 025380 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ---NCPNLEFCGLMTIGMPDY 204 (253)
Q Consensus 128 ~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~---~~~~L~l~GLmth~a~~~ 204 (253)
..+.+...|...++++.. .-.||| ||.| .+ .|+ ++..|++.+.. .-|.|+|.|+-+=.+.+.
T Consensus 91 ~~fa~~taNqaIleA~~g--------~~~vHI-ID~~--i~-~G~---QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~ 155 (374)
T PF03514_consen 91 LKFAHFTANQAILEAFEG--------ERRVHI-IDFG--IG-FGV---QWPSLIQALASRPGGPPSLRITGIGPPNSGSA 155 (374)
T ss_pred HhhhhhchhHHHHHHhcc--------CcceEE-Eecc--CC-cch---HHHHHHHHHhcCCCCCCeEEEEeccCCCCCcH
Confidence 344555555555554432 125777 7877 33 777 45677777752 247899998855111122
Q ss_pred CCcHHHHHHHHHHHHH
Q 025380 205 TSTPENFKTLAKCRSE 220 (253)
Q Consensus 205 ~~~~~~F~~l~~~~~~ 220 (253)
...++.-.+|.++.+.
T Consensus 156 ~~l~~~g~rL~~fA~~ 171 (374)
T PF03514_consen 156 DELQETGRRLAEFARS 171 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2334555555555544
No 91
>PLN02489 homocysteine S-methyltransferase
Probab=28.25 E-value=2.8e+02 Score=25.84 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.9
Q ss_pred EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC-CCccCCChhhHHHHHHHHHhcCCCeeEeEEeee
Q 025380 131 VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE-ESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI 199 (253)
Q Consensus 131 i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e-~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth 199 (253)
..|+.++..+..+-+.+++.+. .++|++.+..-.+ .-+.|.+++++. ..+. ....+...|+-+.
T Consensus 186 ~ET~~~l~E~~a~~~~~~~~~~-~~p~~iS~t~~~~~~l~~G~~~~~~~---~~~~-~~~~~~~iGiNC~ 250 (335)
T PLN02489 186 FETIPNKLEAQAYVELLEEENI-KIPAWISFNSKDGVNVVSGDSLLECA---SIAD-SCKKVVAVGINCT 250 (335)
T ss_pred EeccCChHHHHHHHHHHHHcCC-CCeEEEEEEeCCCCccCCCCcHHHHH---HHHH-hcCCceEEEecCC
Confidence 7899999999999999887764 6789988875211 235787766554 4444 4455667777654
No 92
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.62 E-value=3.4e+02 Score=23.88 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=41.6
Q ss_pred cccccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 84 RCFGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 84 ~~fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
..+|.++++-+......+.+.+....+ ..+.+.....++. ..+++ +.++|+...-..|++.|.+.+.
T Consensus 60 ~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~--~~~D~VvdaiD~~~~k~~L~~~c~~~~i 128 (231)
T cd00755 60 STVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLG--GDPDFVVDAIDSIRAKVALIAYCRKRKI 128 (231)
T ss_pred hhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhc--CCCCEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 446777877666655555433332322 3344444555552 34676 5668999988889999988764
No 93
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=67 Score=31.55 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=61.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe-----CCCCCCccCCChhhHHHHHHHHHh--cCC-------------
Q 025380 130 MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----TSGEESKSGVEPSGCLELVKHVSQ--NCP------------- 189 (253)
Q Consensus 130 li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn-----TG~e~~R~Gv~p~e~~~l~~~i~~--~~~------------- 189 (253)
+.+.+-+.+.+..+.+.....+. . ++.|+|| .|. -..+||+++.+..++..|.+ +.|
T Consensus 186 ~d~M~pdaE~lkiv~e~L~~l~I-g-d~~iKvNhRkiLdgm-f~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKG 262 (518)
T KOG1936|consen 186 FDPMIPDAECLKIVVEILSRLGI-G-DYGIKVNHRKILDGM-FAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKG 262 (518)
T ss_pred CCCCCchHHHHHHHHHHHhhcCc-c-ceEEEecHHHHHHHH-HHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcC
Confidence 35677788888888888888875 4 8999999 331 34567776555444333320 111
Q ss_pred -----------CeeEeEEeee------cCC--CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 190 -----------NLEFCGLMTI------GMP--DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 190 -----------~L~l~GLmth------~a~--~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
.+++.|+-.. .|. +.+...+.+..|+.+++-++. +|++ ..+||-+|
T Consensus 263 lsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~-fg~s---~~isfDlS 327 (518)
T KOG1936|consen 263 LSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEALADLKQLFEYLEI-FGIS---ERISFDLS 327 (518)
T ss_pred CCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHH-cCCc---ceEEeehH
Confidence 1223332111 111 111345778889999988875 7775 45777666
No 94
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=27.35 E-value=2e+02 Score=24.89 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=41.5
Q ss_pred ccccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 85 CFGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 85 ~fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
..|.++++-+......+.+.+.+..+ ..+..+....++ +.+++ +.++|+++.-..|++.|.+.+.
T Consensus 71 diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~---~~~DvVi~~~d~~~~r~~l~~~~~~~~i 137 (228)
T cd00757 71 DVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELI---AGYDLVLDCTDNFATRYLINDACVKLGK 137 (228)
T ss_pred hCCChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHH---hCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 35777777666655555433333322 333334455566 45777 5588999998999999998875
No 95
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=26.52 E-value=2.1e+02 Score=22.72 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=37.3
Q ss_pred ccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChh
Q 025380 128 LAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPS 175 (253)
Q Consensus 128 ~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~ 175 (253)
..++.-|+|.+.+..|.+.+...|. +..++.|+--|. .+=+|+.|.
T Consensus 56 ~KVVLkv~~e~eL~~L~~~a~~~gi-~~~l~te~p~gt-~T~LaigP~ 101 (116)
T cd02429 56 HKVVLEVPDEAALKNLSSKLTENSI-KHKLWIEQPENI-PTCIALKPY 101 (116)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEEcCCCC-ceEEEeCCC
Confidence 4577889999999999999999987 888888887552 466777774
No 96
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=26.02 E-value=5.8e+02 Score=25.79 Aligned_cols=96 Identities=10% Similarity=0.108 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeE------eEEee-ecCC-CCCCc
Q 025380 136 NEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEF------CGLMT-IGMP-DYTST 207 (253)
Q Consensus 136 s~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l------~GLmt-h~a~-~~~~~ 207 (253)
+.+++..|.+.|.+.+. -.|.+.+.+..-=.|++++++.++.+.+. .. +|.. .++++ -+.. ..-..
T Consensus 387 t~~ql~~LA~iA~~yg~----g~irlT~~Qni~l~~V~~~~~~~l~~~L~-~~-Gl~~~~~~~r~~~vAC~G~~~C~~a~ 460 (593)
T PRK09567 387 TTDQMRGLAKIAARYGD----GEIRLTVWQNLLISGVPDADVAAVEAAIE-AL-GLTTEASSIRAGLVACTGNAGCKFAA 460 (593)
T ss_pred CHHHHHHHHHHHHHhCC----CEEEEeCCCCeEEcCCCHHHHHHHHHHHH-Hc-CCCCCCcceeeccEecCCCCCCCccH
Confidence 56789999999988763 23555555435557899998988888875 42 2221 12332 3322 11112
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 208 PENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 208 ~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
-+.-..+..+.+.|....+++ ..+++.|||
T Consensus 461 ~dT~~~a~~l~~~l~~~~~l~---~~ikI~vSG 490 (593)
T PRK09567 461 ADTKGHALAIADYCEPRVALD---QPVNIHLTG 490 (593)
T ss_pred hhHHHHHHHHHHHHHHhcCCC---CCcEEEEEC
Confidence 234444555555665544443 346777775
No 97
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=25.44 E-value=1.9e+02 Score=27.27 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=60.2
Q ss_pred cEEEEEecc-----------CCHHHHHHHHH-cCCccccccc--------HHHHHHHHhc-CCCC-ceEEee-CCCCccc
Q 025380 61 IRIVAVSKT-----------KPVSVIRQVYE-AGHRCFGENY--------VQEIVEKAAQ-LPDD-LEWHFI-GNLQSNK 117 (253)
Q Consensus 61 v~L~aVvK~-----------h~~~~i~~~~~-~G~~~fGen~--------vqEa~~~~~~-~~~~-i~~h~I-G~lq~nk 117 (253)
+.|+|=+|- ....++.+.|+ .|+.++.|.+ ++.....|.. ...| ++=-|| -+.|-..
T Consensus 119 ~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~e 198 (338)
T PLN02460 119 PGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYY 198 (338)
T ss_pred cceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHH
Confidence 568888883 34456777775 6787755544 3334555554 3335 333444 3444333
Q ss_pred HHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC
Q 025380 118 VKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS 164 (253)
Q Consensus 118 ~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG 164 (253)
.+.+= ....=||..+=+.+.+..|-+.|...|- .++|+|.+.
T Consensus 199 Ar~~G--ADAVLLIaaiL~~~~L~~l~~~A~~LGm---e~LVEVH~~ 240 (338)
T PLN02460 199 ARSKG--ADAILLIAAVLPDLDIKYMLKICKSLGM---AALIEVHDE 240 (338)
T ss_pred HHHcC--CCcHHHHHHhCCHHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 32211 1112247777788899999999998764 899999986
No 98
>PRK07877 hypothetical protein; Provisional
Probab=25.37 E-value=6.3e+02 Score=26.39 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCcEEEEEeccCCHHHHHHHHHcCC------------------------cccccccHHHHHHHHhcCCCCceEE-eeCCC
Q 025380 59 DRIRIVAVSKTKPVSVIRQVYEAGH------------------------RCFGENYVQEIVEKAAQLPDDLEWH-FIGNL 113 (253)
Q Consensus 59 ~~v~L~aVvK~h~~~~i~~~~~~G~------------------------~~fGen~vqEa~~~~~~~~~~i~~h-~IG~l 113 (253)
..|-|+.+ +-|...+..+..+|+ ..+|.++++-+......+...+... +...+
T Consensus 108 ~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 34667777 467666666666775 3478888887777766665443222 23556
Q ss_pred CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 114 QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 114 q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
..+.+..++ ..+|+ +...||++.=..|++.|.+.++
T Consensus 186 ~~~n~~~~l---~~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 186 TEDNVDAFL---DGLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred CHHHHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 666677777 45786 7789999888899999998875
No 99
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.95 E-value=1.5e+02 Score=26.80 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=45.9
Q ss_pred EEEEeccCCHHHHHHHHHcCCccccc--ccHH---HHHHHHhcCCCCceEEeeCCCCcccHHHHhhCCCCccEEEEeCCH
Q 025380 63 IVAVSKTKPVSVIRQVYEAGHRCFGE--NYVQ---EIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNE 137 (253)
Q Consensus 63 L~aVvK~h~~~~i~~~~~~G~~~fGe--n~vq---Ea~~~~~~~~~~i~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~ 137 (253)
.+.|+ .|..+++.++.++|+++++. -+++ ++.........++.+..+|.+..+.+..+++ ...+.+ ++.++
T Consensus 185 ~IgVe-v~t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~~~~~--~Gvd~I-~vsai 260 (272)
T cd01573 185 KIVVE-VDSLEEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAAAYAA--AGADIL-VTSAP 260 (272)
T ss_pred eEEEE-cCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHHHHHH--cCCcEE-EEChh
Confidence 44554 68888888888999998543 3333 3333222221235557789999988888885 235666 77776
Q ss_pred H
Q 025380 138 K 138 (253)
Q Consensus 138 ~ 138 (253)
-
T Consensus 261 ~ 261 (272)
T cd01573 261 Y 261 (272)
T ss_pred h
Confidence 4
No 100
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.61 E-value=4.6e+02 Score=23.89 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=37.5
Q ss_pred EEEeccCCHHHHHHHHHcCCcc--cccccHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhh
Q 025380 64 VAVSKTKPVSVIRQVYEAGHRC--FGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLA 123 (253)
Q Consensus 64 ~aVvK~h~~~~i~~~~~~G~~~--fGen~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~ 123 (253)
+.|. .|..+++.+++++|++. |+.-.+++..+....++..+.+..+|.+..+.+..+++
T Consensus 192 I~VE-v~tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~ 252 (277)
T PRK05742 192 VEVE-VESLDELRQALAAGADIVMLDELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAE 252 (277)
T ss_pred EEEE-eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHH
Confidence 4443 57788888899999887 33333333333222232335567789999888888874
No 101
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=23.78 E-value=2.5e+02 Score=24.24 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=40.7
Q ss_pred cccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccEEE-EeCCHHHHHHHHHHHHhc-CC
Q 025380 86 FGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAMVE-SVDNEKIAGRLNRMVETM-GR 152 (253)
Q Consensus 86 fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~li~-sVds~~~a~~L~~~a~~~-~~ 152 (253)
.|.++++.+......+.+.+.+..+ ..+..+....++ +.++++. .+|+.+.-..+++.+.+. +.
T Consensus 78 vG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~---~~~DvVI~a~D~~~~r~~l~~~~~~~~~~ 144 (212)
T PRK08644 78 IGMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELF---KDCDIVVEAFDNAETKAMLVETVLEHPGK 144 (212)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEEEeeecCHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 5677777666555544333333322 445545555566 4588866 779999888888888877 64
No 102
>PRK07534 methionine synthase I; Validated
Probab=23.60 E-value=3.7e+02 Score=25.12 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=41.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC-CCccCCChhhHHHHHHHHHhcCCCeeEeEEee
Q 025380 130 MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE-ESKSGVEPSGCLELVKHVSQNCPNLEFCGLMT 198 (253)
Q Consensus 130 li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e-~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmt 198 (253)
+..|+.|+..+..+-+.+++.+. +|++.+....+ -.+.|.+++++...+... -+.+...|+-+
T Consensus 149 ~~ET~p~l~E~~a~~~~~~~~~~---Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~---~~~~~avGvNC 212 (336)
T PRK07534 149 WVETISAPEEIRAAAEAAKLAGM---PWCGTMSFDTAGRTMMGLTPADLADLVEKL---GEPPLAFGANC 212 (336)
T ss_pred EEeccCCHHHHHHHHHHHHHcCC---eEEEEEEECCCCeeCCCCcHHHHHHHHHhc---CCCceEEEecC
Confidence 37899999999999999887654 56666554211 346788776665554321 13456677754
No 103
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=23.38 E-value=3.2e+02 Score=26.13 Aligned_cols=86 Identities=16% Similarity=0.175 Sum_probs=48.6
Q ss_pred cceEEEEEeCC---CCCCccCCChhhHHHHHHHHHhcCCCeeEeEEee---ecCCCC---CCcHHHHHHHHHHHHHHHHH
Q 025380 154 PLKVLVQVNTS---GEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMT---IGMPDY---TSTPENFKTLAKCRSEVCKA 224 (253)
Q Consensus 154 ~~~V~lqVnTG---~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmt---h~a~~~---~~~~~~F~~l~~~~~~l~~~ 224 (253)
.-+|+|+-... +.-+=.|+.|.++..++..|. .--++-..-|+- |.+..+ ....+.+.+..++.+...+
T Consensus 41 ~~~vLIEAT~NQVnq~GGYTGMTP~DFr~fV~aiA-~~~gfp~e~liLGGDHLGPN~Wq~~pA~eAM~ka~~mv~AYv~- 118 (426)
T COG4573 41 QTPVLIEATSNQVNQFGGYTGMTPADFRGFVFAIA-DKLGFPRERLILGGDHLGPNPWQHLPAAEAMAKADDLVKAYVA- 118 (426)
T ss_pred CCceEeecccccccccCCcCCCChHHHHHHHHHHH-HHhCCcHHHHhccCCcCCCCccccCCHHHHHHHHHHHHHHHHH-
Confidence 45788864321 123567889999999988886 433333333332 322211 2344667666666665554
Q ss_pred hCCCCCCCeeeccCcch
Q 025380 225 LGIPEEQCDLSMGMSGD 241 (253)
Q Consensus 225 ~~~~~~~~~LSmGMS~D 241 (253)
-|+...-..-|||--+|
T Consensus 119 AGF~KIHLDaSM~CA~d 135 (426)
T COG4573 119 AGFTKIHLDASMSCAGD 135 (426)
T ss_pred cCceeeecccccccCCC
Confidence 36654123568887766
No 104
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=22.69 E-value=3.2e+02 Score=23.22 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=37.3
Q ss_pred cccccHHHHHHHHhcCCCCceEEee-CCCC--cccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 86 FGENYVQEIVEKAAQLPDDLEWHFI-GNLQ--SNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 86 fGen~vqEa~~~~~~~~~~i~~h~I-G~lq--~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
.|..+++.+......+.+++....+ ..+. .+.....+ +.+++ +.+.|+......+++.|.+.+.
T Consensus 72 iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~---~~~dvVi~~~d~~~~~~~ln~~c~~~~i 139 (198)
T cd01485 72 SGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYL---QKFTLVIATEENYERTAKVNDVCRKHHI 139 (198)
T ss_pred cCchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHH---hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 4555665555544444443433333 2232 23344555 45777 5566788888899999998775
No 105
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.69 E-value=5.9e+02 Score=23.18 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=44.8
Q ss_pred EEEEeccCCHHHHHHHHHcCCcccccc--cHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhhCCCCccE-EEEeCCH
Q 025380 63 IVAVSKTKPVSVIRQVYEAGHRCFGEN--YVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAM-VESVDNE 137 (253)
Q Consensus 63 L~aVvK~h~~~~i~~~~~~G~~~fGen--~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~~~~~~~l-i~sVds~ 137 (253)
++.|+ .|..+++..+.+.|+++++.. .+++.......+..++....||.+..+.+..+++ .+. ..++.++
T Consensus 190 ~Igvs-v~tleea~~A~~~gaDyI~lD~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~----~Gvd~IAvg~l 262 (277)
T PRK08072 190 KIEVE-TETEEQVREAVAAGADIIMFDNRTPDEIREFVKLVPSAIVTEASGGITLENLPAYGG----TGVDYISLGFL 262 (277)
T ss_pred EEEEE-eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHH----cCCCEEEEChh
Confidence 44554 488888988899999985543 2333333333343455556889999999998884 333 4555554
No 106
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.56 E-value=3.2e+02 Score=22.65 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=42.8
Q ss_pred cccccccHHHHHHHHhcCCCCceEEe-eCCCCcccHHHHhhCCCCccEE-EEeCCHHHHHHHHHHHHhc-CC
Q 025380 84 RCFGENYVQEIVEKAAQLPDDLEWHF-IGNLQSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETM-GR 152 (253)
Q Consensus 84 ~~fGen~vqEa~~~~~~~~~~i~~h~-IG~lq~nk~~~~~~~~~~~~li-~sVds~~~a~~L~~~a~~~-~~ 152 (253)
...|.++.+.+......+.+.+.+.. ...+..+....++ +.++++ .++|+++.-..+.+.+.+. +.
T Consensus 47 ~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~~~~~l---~~~DlVi~~~d~~~~r~~i~~~~~~~~~i 115 (174)
T cd01487 47 SQIGEPKVEALKENLREINPFVKIEAINIKIDENNLEGLF---GDCDIVVEAFDNAETKAMLAESLLGNKNK 115 (174)
T ss_pred hhCCChHHHHHHHHHHHHCCCCEEEEEEeecChhhHHHHh---cCCCEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 45788888777766665543333322 2455555566666 468874 4779998887788777766 54
No 107
>KOG0187 consensus 40S ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=38 Score=27.44 Aligned_cols=14 Identities=57% Similarity=0.890 Sum_probs=11.9
Q ss_pred hHHHHHhhhhhhHH
Q 025380 6 HEEERKRRENHINE 19 (253)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (253)
+||||.||.|.+-|
T Consensus 74 QEEERErrdnyVPe 87 (134)
T KOG0187|consen 74 QEEERERRDNYVPE 87 (134)
T ss_pred cHHHHHhhcccCcc
Confidence 68999999998765
No 108
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=20.91 E-value=3.8e+02 Score=24.30 Aligned_cols=100 Identities=20% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCcEEEEEecc----CC-------HHHHHHHHH-cCCccccccc--------HHHHHHHHhcCCCC-ceEEee-CCCCcc
Q 025380 59 DRIRIVAVSKT----KP-------VSVIRQVYE-AGHRCFGENY--------VQEIVEKAAQLPDD-LEWHFI-GNLQSN 116 (253)
Q Consensus 59 ~~v~L~aVvK~----h~-------~~~i~~~~~-~G~~~fGen~--------vqEa~~~~~~~~~~-i~~h~I-G~lq~n 116 (253)
.++.++|=+|- +| ..++...|+ .|+.++.+-+ ++-....+....-| +.=-|| .+.|
T Consensus 44 ~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQ-- 121 (254)
T COG0134 44 GKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQ-- 121 (254)
T ss_pred CCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHH--
Confidence 34578898883 22 244566665 5687765544 22222333333334 333344 4444
Q ss_pred cHHHHhh-CCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC
Q 025380 117 KVKPLLA-GVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS 164 (253)
Q Consensus 117 k~~~~~~-~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG 164 (253)
+...-. .....=+|.++=+.++++.|.+.|...|- .|+++|++.
T Consensus 122 -I~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm---~~LVEVh~~ 166 (254)
T COG0134 122 -IYEARAAGADAVLLIVAALDDEQLEELVDRAHELGM---EVLVEVHNE 166 (254)
T ss_pred -HHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCC---eeEEEECCH
Confidence 433321 10112246677778889999999998774 899999975
No 109
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.71 E-value=2e+02 Score=25.71 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=11.8
Q ss_pred ChhhHHHHHHHHHhcCCCeeEeEEe
Q 025380 173 EPSGCLELVKHVSQNCPNLEFCGLM 197 (253)
Q Consensus 173 ~p~e~~~l~~~i~~~~~~L~l~GLm 197 (253)
.|+.+..+.+.+.+.+ ++++.|.+
T Consensus 114 ~~~v~~~a~~~l~~~y-~l~i~g~~ 137 (243)
T PRK03692 114 KPEVLAQTEAKLRTQW-NVNIVGSQ 137 (243)
T ss_pred CHHHHHHHHHHHHHHh-CCEEEEEe
Confidence 3444455555554234 56665553
No 110
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=20.57 E-value=2.9e+02 Score=21.47 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=41.5
Q ss_pred ccccccHHHHHHHHhcCCCCceEEe-eCCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 85 CFGENYVQEIVEKAAQLPDDLEWHF-IGNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 85 ~fGen~vqEa~~~~~~~~~~i~~h~-IG~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
.+|.++.+-+......+.+.+.+.. .-.+..+....++ +.+++ +.++|+...-..|++.+.+.+.
T Consensus 52 ~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~---~~~d~vi~~~d~~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 52 DVGKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELL---KDYDIVIDCVDSLAARLLLNEICREYGI 118 (135)
T ss_dssp GTTSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHH---HTSSEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred cchhHHHHHHHHHHHHhcCceeeeeeecccccccccccc---cCCCEEEEecCCHHHHHHHHHHHHHcCC
Confidence 4577888777765554433222222 2344445566666 34777 5579999999999999998875
Done!