Query 025380
Match_columns 253
No_of_seqs 215 out of 1296
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sy1_A UPF0001 protein YGGS; e 100.0 1.1E-55 3.6E-60 391.9 19.2 210 35-252 4-219 (245)
2 3r79_A Uncharacterized protein 100.0 6E-54 2.1E-58 380.5 21.5 204 35-252 5-211 (244)
3 1ct5_A Protein (yeast hypothet 100.0 5.5E-50 1.9E-54 357.1 24.2 215 34-252 12-236 (256)
4 3cpg_A Uncharacterized protein 100.0 1.5E-40 5.2E-45 299.1 24.0 212 36-252 25-260 (282)
5 3gwq_A D-serine deaminase; str 100.0 2E-34 6.7E-39 273.2 14.6 202 32-248 52-261 (426)
6 1xfc_A Alanine racemase; alpha 100.0 2.9E-31 1E-35 247.2 21.6 197 32-252 17-226 (384)
7 1vfs_A Alanine racemase; TIM-b 100.0 3.8E-31 1.3E-35 246.7 20.5 197 32-252 13-222 (386)
8 2vd8_A Alanine racemase; pyrid 100.0 1.4E-30 4.6E-35 243.6 19.2 197 32-252 17-224 (391)
9 1bd0_A Alanine racemase; isome 100.0 1.4E-30 4.7E-35 243.6 19.1 197 32-252 13-217 (388)
10 4ecl_A Serine racemase, vantg; 100.0 3.6E-30 1.2E-34 240.3 18.9 193 32-252 12-217 (374)
11 2dy3_A Alanine racemase; alpha 100.0 1E-29 3.5E-34 234.6 19.2 194 32-252 9-212 (361)
12 2rjg_A Alanine racemase; alpha 100.0 1.6E-29 5.6E-34 235.6 16.3 193 32-252 29-227 (379)
13 1rcq_A Catabolic alanine racem 100.0 3.1E-29 1.1E-33 231.3 17.9 192 32-252 9-206 (357)
14 3llx_A Predicted amino acid al 100.0 1E-29 3.4E-34 236.6 14.5 199 32-252 20-232 (376)
15 3co8_A Alanine racemase; prote 100.0 5.4E-29 1.8E-33 231.9 18.4 195 32-252 15-220 (380)
16 3e5p_A Alanine racemase; ALR, 100.0 4.6E-29 1.6E-33 232.7 14.5 191 32-244 14-212 (371)
17 4a3q_A Alanine racemase 1; iso 100.0 2.3E-28 7.9E-33 228.9 18.3 188 32-243 14-208 (382)
18 3kw3_A Alanine racemase; niaid 100.0 1.8E-28 6.1E-33 229.2 17.3 187 32-242 26-218 (376)
19 3mub_A Alanine racemase; alpha 100.0 8E-28 2.8E-32 224.0 18.3 188 32-244 14-208 (367)
20 3anu_A D-serine dehydratase; P 99.9 4.2E-28 1.4E-32 224.6 12.3 201 32-251 18-236 (376)
21 3hur_A Alanine racemase; struc 99.9 4.7E-27 1.6E-31 220.9 17.3 183 32-242 15-209 (395)
22 2p3e_A Diaminopimelate decarbo 99.9 2.6E-25 8.9E-30 208.8 19.7 188 32-240 40-245 (420)
23 1twi_A Diaminopimelate decarbo 99.9 6.5E-25 2.2E-29 207.0 21.1 195 32-239 36-250 (434)
24 2j66_A BTRK, decarboxylase; bu 99.9 2E-24 6.9E-29 203.3 21.0 189 32-239 23-228 (428)
25 2qgh_A Diaminopimelate decarbo 99.9 2.3E-24 7.8E-29 203.3 19.6 188 32-239 39-245 (425)
26 2o0t_A Diaminopimelate decarbo 99.9 3.6E-23 1.2E-27 197.6 17.4 189 32-239 48-260 (467)
27 3vab_A Diaminopimelate decarbo 99.9 1.5E-21 5.1E-26 185.6 19.8 186 32-238 55-260 (443)
28 3n2b_A Diaminopimelate decarbo 99.9 1.6E-21 5.6E-26 185.2 19.0 185 32-238 58-263 (441)
29 2nva_A Arginine decarboxylase, 99.9 2.6E-21 9E-26 179.0 17.8 182 32-239 23-216 (372)
30 2plj_A Lysine/ornithine decarb 99.8 1.4E-20 4.7E-25 177.5 16.0 182 32-239 61-255 (419)
31 1f3t_A ODC, ornithine decarbox 99.8 7.2E-19 2.5E-23 165.9 19.0 181 32-239 44-237 (425)
32 3btn_A Antizyme inhibitor 1; T 99.8 1.3E-17 4.3E-22 158.6 21.5 180 32-239 44-237 (448)
33 7odc_A Protein (ornithine deca 99.8 3.7E-18 1.3E-22 161.3 17.6 179 32-238 44-236 (424)
34 2oo0_A ODC, ornithine decarbox 99.8 9E-18 3.1E-22 160.7 19.8 181 32-240 54-248 (471)
35 2yxx_A Diaminopimelate decarbo 99.8 4.5E-18 1.5E-22 158.0 16.3 146 32-202 19-182 (386)
36 1knw_A Diaminopimelate decarbo 99.7 6.9E-18 2.4E-22 159.1 12.5 176 32-239 32-227 (425)
37 3nzp_A Arginine decarboxylase; 99.7 3.1E-16 1.1E-20 154.6 22.8 201 32-238 51-273 (619)
38 3nzq_A ADC, biosynthetic argin 99.7 2.9E-16 9.8E-21 155.8 19.7 201 32-238 92-311 (666)
39 3n2o_A ADC, biosynthetic argin 99.7 1.8E-15 6E-20 149.8 21.2 201 32-238 70-294 (648)
40 3mt1_A Putative carboxynorsper 99.5 4.2E-14 1.5E-18 130.9 10.0 180 32-238 10-198 (365)
41 3n29_A Carboxynorspermidine de 99.4 6.1E-13 2.1E-17 125.6 11.2 174 32-238 50-237 (418)
42 3noy_A 4-hydroxy-3-methylbut-2 66.1 17 0.00058 33.3 7.5 179 61-252 32-232 (366)
43 3inp_A D-ribulose-phosphate 3- 42.8 1.3E+02 0.0045 25.6 9.0 95 139-252 122-219 (246)
44 1zud_1 Adenylyltransferase THI 41.6 61 0.0021 27.3 6.7 80 70-152 39-144 (251)
45 3epw_A IAG-nucleoside hydrolas 40.1 1E+02 0.0035 27.4 8.2 59 150-222 10-69 (338)
46 1tqj_A Ribulose-phosphate 3-ep 38.4 1.7E+02 0.0058 24.2 9.3 157 73-251 21-196 (230)
47 1y8q_A Ubiquitin-like 1 activa 32.5 1.9E+02 0.0066 25.5 8.8 80 69-152 46-151 (346)
48 1i4n_A Indole-3-glycerol phosp 29.4 2.6E+02 0.009 23.7 9.9 97 61-164 41-160 (251)
49 1h1y_A D-ribulose-5-phosphate 28.4 2.4E+02 0.0082 22.9 9.2 156 73-251 23-196 (228)
50 3or1_B Sulfite reductase beta; 28.1 52 0.0018 29.9 4.2 49 133-185 71-119 (386)
51 1pii_A N-(5'phosphoribosyl)ant 26.3 2.4E+02 0.008 26.3 8.5 98 60-164 47-167 (452)
52 3o63_A Probable thiamine-phosp 25.6 2.3E+02 0.0077 23.8 7.6 71 62-135 136-220 (243)
53 2xvc_A ESCRT-III, SSO0910; cel 25.3 43 0.0015 22.6 2.2 27 167-194 32-58 (59)
54 4g9p_A 4-hydroxy-3-methylbut-2 24.9 15 0.00053 34.0 0.0 186 57-252 22-251 (406)
55 3l9w_A Glutathione-regulated p 24.4 3.5E+02 0.012 24.4 9.2 105 76-185 21-153 (413)
56 1jw9_B Molybdopterin biosynthe 22.9 1.5E+02 0.0051 24.7 6.0 61 89-152 85-147 (249)
No 1
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=1.1e-55 Score=391.90 Aligned_cols=210 Identities=36% Similarity=0.485 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC----CceEEee
Q 025380 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD----DLEWHFI 110 (253)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~----~i~~h~I 110 (253)
.|++|++.|+++|.++|.+++|+|++++|+||||+||++.++.++++|+++||||++|||++|+..+.. +|.||||
T Consensus 4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~i 83 (245)
T 3sy1_A 4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPASAIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNFA 83 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHHHHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEeec
Confidence 588999999999999999999999999999999999998899999999999999999999999988653 6899999
Q ss_pred CCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC
Q 025380 111 GNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN 190 (253)
Q Consensus 111 G~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~ 190 (253)
|++|+||++.++ +.+++++||||.++++.|++.|.+.++ +++||||||||+||+|+||+|+++.++++.+. .+|+
T Consensus 84 G~lq~nk~~~~~---~~~~~i~sVds~~~a~~l~~~a~~~~~-~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~ 158 (245)
T 3sy1_A 84 GPLQSNKSRLVA---EHFDWCITIDRLRIATRLNDQRPAELP-PLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPR 158 (245)
T ss_dssp SCCCGGGHHHHH---HHCSEEEEECCHHHHHHHHHHSCTTSC-CEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTT
T ss_pred CCCChHHHHHHH---HHCCEEEecCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCC
Confidence 999999999988 358999999999999999999998887 99999999999999999999999999999998 9999
Q ss_pred eeEeEEeeecCCCC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 191 LEFCGLMTIGMPDY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 191 L~l~GLmth~a~~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
|++.|||||+|... +..+++|+.|+++++.|++.+ .+ ..+||||||+||++||++|||+
T Consensus 159 l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~~l~~~~-~~--~~~LSmGmS~d~~~Ai~~G~t~ 219 (245)
T 3sy1_A 159 LRLRGLSAIPAPESEYVRQFEVARQMAVAFAGLKTRY-PH--IDTLALGQSDDMEAAIAAGSTM 219 (245)
T ss_dssp EEEEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTS-TT--CCEEECCCSTTHHHHHHHTCCE
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CC--CCEEeccCcHhHHHHHHcCCCE
Confidence 99999999999844 356899999999999998753 33 4899999999999999999986
No 2
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=6e-54 Score=380.49 Aligned_cols=204 Identities=40% Similarity=0.520 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCC---CCceEEeeC
Q 025380 35 VAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP---DDLEWHFIG 111 (253)
Q Consensus 35 ~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~---~~i~~h~IG 111 (253)
.|.+|+..|+++|.++|.++||+|++++|+||||+||++.|+.++++|+++||||++|||++|+..+. .+|.|||||
T Consensus 5 ~i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG 84 (244)
T 3r79_A 5 EIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIG 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHHHHHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecC
Confidence 48899999999999999999999999999999999999889999999999999999999999999875 258999999
Q ss_pred CCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCe
Q 025380 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNL 191 (253)
Q Consensus 112 ~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L 191 (253)
++|+||++.++ +.+++++||||+++++.|++.|.+.++ +++||||||||+||+|+||+|+++.++++.+. .+|+|
T Consensus 85 ~lq~nk~~~~v---~~~~~i~sVds~~~a~~L~~~a~~~g~-~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L 159 (244)
T 3r79_A 85 PLQSNKAADAV---ALFDVVESIDREKIARALSEECARQGR-SLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKL 159 (244)
T ss_dssp CCCGGGHHHHH---HHCSEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCC
T ss_pred CCCHHHHHHHH---HHCCEEEeeCCHHHHHHHHHHHHHcCC-CceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCC
Confidence 99999999998 348999999999999999999999998 99999999999999999999999999999998 99999
Q ss_pred eEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 192 EFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 192 ~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
+++|||||+|...+.. +.|..|+++++.+ ++ .+||||||+||++||++|||+
T Consensus 160 ~l~GlmTh~a~~dd~~-~~f~~l~~l~~~l----~~----~~lSmGmS~d~~~Ai~~G~t~ 211 (244)
T 3r79_A 160 PVEGLMCIPPAEENPG-PHFALLAKLAGQC----GL----EKLSMGMSGDFETAVEFGATS 211 (244)
T ss_dssp CCCEEECCCCTTSCSH-HHHHHHHHHHHHH----TC----CEEECCCTTTHHHHHHTTCSE
T ss_pred EEEEEEecCCCCCCHH-HHHHHHHHHHHhC----CC----CEEEeecchhHHHHHHcCCCE
Confidence 9999999999855443 8899999998765 22 689999999999999999986
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=5.5e-50 Score=357.08 Aligned_cols=215 Identities=39% Similarity=0.588 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC--CCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcCCCCceEEeeC
Q 025380 34 GVAATALRSVIQRVHQAAERSSRP--PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIG 111 (253)
Q Consensus 34 ~~l~~Nl~~i~~~i~~~~~~~~r~--p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~IG 111 (253)
..|.+|+..|+++|..+++.++|. |++++|+||||+||++.|..++++|+++||||++|||+.|+..++.+|.|||||
T Consensus 12 ~~i~~nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~~~~~aG~~~fgva~vqEa~~~r~~~~~~l~~h~iG 91 (256)
T 1ct5_A 12 TQLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIG 91 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHHHHHHcCCCEEEEEcHHHHHHHHHhcccCeeEeecC
Confidence 359999999999999999999997 778999999999999999889999999999999999999999875579999999
Q ss_pred CCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCC--cceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHh-c
Q 025380 112 NLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK--PLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQ-N 187 (253)
Q Consensus 112 ~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~--~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~i~~-~ 187 (253)
++|+||++.++. ++.++++++|||+++++.|++.+.+.++. +++||||||||+||+|+||+| +++.++++.+.. .
T Consensus 92 ~lq~nk~~~~~~-~~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~~~ 170 (256)
T 1ct5_A 92 GLQTNKCKDLAK-VPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEE 170 (256)
T ss_dssp CCCGGGHHHHHH-CTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHhc-ccccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHHcc
Confidence 999999999921 14589999999999999999999887721 689999999999999999999 899999999841 6
Q ss_pred CCCeeEeEEeeec--CCC--CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 188 CPNLEFCGLMTIG--MPD--YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 188 ~~~L~l~GLmth~--a~~--~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
+|+|+++|||||+ ++. ++..++.|+.++++++.+++.++ + ..+||||||+||+.||++|++|
T Consensus 171 ~~~L~l~Glmth~~~~~ad~~~~~~~~f~~~~~~~~~l~~~~~-~--~~~lS~Gms~d~~~ai~~g~t~ 236 (256)
T 1ct5_A 171 CKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG-T--SLKLSMGMSADFREAIRQGTAE 236 (256)
T ss_dssp CCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHC-C--CCEEECCCTTTHHHHHHTTCSE
T ss_pred CCCeeEEEEEEECCcCCCCCHHHHHHHHHHHHHHHHHHHhcCC-C--CCEEEecccHhHHHHHHcCCCE
Confidence 8999999999999 762 33467899999999999987332 2 3789999999999999999986
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=100.00 E-value=1.5e-40 Score=299.10 Aligned_cols=212 Identities=34% Similarity=0.532 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHHHHcCCcccccccHHHHHHHHhcC--------------
Q 025380 36 AATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQL-------------- 101 (253)
Q Consensus 36 l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~-------------- 101 (253)
|..|+..|+.++..+++.++|.|.+++|+||+|+||+..|.+++++|+++|||++++||+.++..+
T Consensus 25 l~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~~ 104 (282)
T 3cpg_A 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGVA 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHHHHCCCCEEEEEeHHHHHHHHHhhhhhccccccccccc
Confidence 666777777777777777787777899999999999999877788999999999999999999872
Q ss_pred -C-----C-CceEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh
Q 025380 102 -P-----D-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP 174 (253)
Q Consensus 102 -~-----~-~i~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p 174 (253)
. . .|.||++|++|+++++.++ +.++++++|||+++++.|++.+.+.++ +++||||||||++.+|+||+|
T Consensus 105 G~~~d~~~~~i~~~~iG~~~~~~~~~~~---~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~lkVdtGme~~R~G~~~ 180 (282)
T 3cpg_A 105 GAAPDAAAEHIPFHLIGQLQSNKIGKVL---PVVDTIESVDSIDLAEKISRRAVARGI-TVGVLLEVNESGEESKSGCDP 180 (282)
T ss_dssp ------CCEEECEEECSCCCGGGHHHHT---TTCSEEEEECCHHHHHHHHHHHHHHTC-CEEEEEEBCCSSCTTSSSBCG
T ss_pred cccccccccceeeeecChhHHHHHHHHH---HhCCEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEECCCCCCCCCcCH
Confidence 1 2 4889999999999999988 458999999999999999999988887 999999999995559999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEEeeecCCCCC--CcHHHHHHHHHHHHHHHHHhCCC-CCCCeeeccCcchHHHHHHcCCC
Q 025380 175 SGCLELVKHVSQNCPNLEFCGLMTIGMPDYT--STPENFKTLAKCRSEVCKALGIP-EEQCDLSMGMSGDFELAVRNTLL 251 (253)
Q Consensus 175 ~e~~~l~~~i~~~~~~L~l~GLmth~a~~~~--~~~~~F~~l~~~~~~l~~~~~~~-~~~~~LSmGMS~D~~~Ai~~Gs~ 251 (253)
+++.++++.+. .+|+|++.|||||++...+ ..++.|..+.++++.+++.+|++ .....+|||||+||+.++++|++
T Consensus 181 ee~~~l~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~S~~~~~~~~~~~~ 259 (282)
T 3cpg_A 181 AHAIRIAQKIG-TLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGST 259 (282)
T ss_dssp GGHHHHHHHHH-TCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCTTTHHHHHHTTCS
T ss_pred HHHHHHHHHHH-hCCCceEEeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCEEEecCcHhHHHHHHcCCC
Confidence 99999999998 8999999999999998443 34678999999999998754543 12368999999999999999988
Q ss_pred C
Q 025380 252 L 252 (253)
Q Consensus 252 ~ 252 (253)
+
T Consensus 260 ~ 260 (282)
T 3cpg_A 260 I 260 (282)
T ss_dssp E
T ss_pred E
Confidence 6
No 5
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=100.00 E-value=2e-34 Score=273.20 Aligned_cols=202 Identities=11% Similarity=0.118 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+.. .++++++|+|+|++..+ +.++++|+++|+|++++||+.++..+..+|.+. .
T Consensus 52 Dl~al~~N~~~l~~~~~~---------~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi~~ill~-~ 121 (426)
T 3gwq_A 52 YADRVEHNLKWMQAFVAE---------YGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLMA-N 121 (426)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCCEEEEC-S
T ss_pred eHHHHHHHHHHHHHHHhh---------cCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCCCeEEEE-C
Confidence 999999999999998831 36799999999999888 557889999999999999999998765443211 1
Q ss_pred CCCCcccHHHHhhCCC--CccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHhc
Q 025380 111 GNLQSNKVKPLLAGVP--NLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHVSQN 187 (253)
Q Consensus 111 G~lq~nk~~~~~~~~~--~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~i~~~ 187 (253)
+.+.++++..+++..+ .++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.| +++.++++.+. .
T Consensus 122 ~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~-~~~V~l~VdtG--~~R~Gv~~~~e~~~l~~~i~-~ 197 (426)
T 3gwq_A 122 QLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNK-QLQVLLELGVP--GGRTGVRDAAQRNAVLEAIT-R 197 (426)
T ss_dssp CCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-CEEEEEEECCT--TSSSSBCSHHHHHHHHHHHH-T
T ss_pred CcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCC-eeEEEEEeCCC--CCcCCCCCHHHHHHHHHHHH-c
Confidence 2234577776653111 26789999999999999999999997 99999999999 99999985 89999999998 8
Q ss_pred CC-CeeEeEEeeecCCCC--CCcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccCcchHHHHHHc
Q 025380 188 CP-NLEFCGLMTIGMPDY--TSTPENFKTLAKCRSEVCKALGI-PEEQCDLSMGMSGDFELAVRN 248 (253)
Q Consensus 188 ~~-~L~l~GLmth~a~~~--~~~~~~F~~l~~~~~~l~~~~~~-~~~~~~LSmGMS~D~~~Ai~~ 248 (253)
+| +|++.|||||++... +..++.|+.+.++++.|++. |+ .....+||||||+||+.|+++
T Consensus 198 ~~~~l~l~Gl~th~g~~~~~~~~~~~~~~l~~l~~~L~~~-g~~~~~~~~lS~G~S~~~~~a~~~ 261 (426)
T 3gwq_A 198 YPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQ-ERFARAPAVLSGAGSAWYDVVAEE 261 (426)
T ss_dssp STTTEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHH-TCCSSSSEEEEECCSTTHHHHHHH
T ss_pred CCCCEEEEeEEEEccccCCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCChhHHHHHhh
Confidence 99 999999999998743 34678999999999999875 53 112379999999999999997
No 6
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.98 E-value=2.9e-31 Score=247.21 Aligned_cols=197 Identities=17% Similarity=0.142 Sum_probs=170.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ + +++|++|+|+ ||...|.++ .++|+++|+|++++|+..++..+.+ +|
T Consensus 17 dl~~i~~N~~~l~~~~----------~-~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~~I 85 (384)
T 1xfc_A 17 DLGAIEHNVRVLREHA----------G-HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPV 85 (384)
T ss_dssp EHHHHHHHHHHHHHHH----------T-TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHHhC----------C-CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCE
Confidence 9999999999999887 4 6899999999 999988664 5899999999999999999987543 54
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh---hhHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP---SGCLELVK 182 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p---~e~~~l~~ 182 (253)
.++|+.++++++.+++ ++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||+| +++.++++
T Consensus 86 --l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~~~ 156 (384)
T 1xfc_A 86 --LAWLHPPGIDFGPALL----ADVQVAVSSLRQLDELLHAVRRTGR-TATVTVKVDTG--LNRNGVGPAQFPAMLTALR 156 (384)
T ss_dssp --EECCCCTTCCCHHHHH----TTCEEEECSHHHHHHHHHHHHHHCC-CEEEEEEBCSS--CCSSSBCTTTHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHHH----cCcEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEECC--CCccCCCcCcHHHHHHHHH
Confidence 5779999999999994 7899999999999999999988887 99999999999 99999999 89999999
Q ss_pred HHHhcCCCeeEeEEeeecCCCC--CC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 183 HVSQNCPNLEFCGLMTIGMPDY--TS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~~~--~~--~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+. .+|+|++.|||||++... +. .+..|+.+.++.+.+++ .|++. ..+|||||+++..+.+.|+++
T Consensus 157 ~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~l~~g~s~~~~~~~~~~~~~ 226 (384)
T 1xfc_A 157 QAM-AEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQARE-QGVRF--EVAHLSNSSATMARPDLTFDL 226 (384)
T ss_dssp HHH-HTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHH-TTCCC--SEEECBCHHHHHHCGGGCCSE
T ss_pred HHH-hCCCCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEEecCHHHhcCccccCCE
Confidence 998 899999999999998722 22 45778888999888876 57764 789999999999988877654
No 7
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.97 E-value=3.8e-31 Score=246.75 Aligned_cols=197 Identities=14% Similarity=0.084 Sum_probs=169.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ ++++|++|+|+ ||...|.+ +.++|+++|+|++++|+..++..+.+ +|
T Consensus 13 dl~~i~~N~~~l~~~~-----------~~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~i 81 (386)
T 1vfs_A 13 DLDAVRANVRALRARA-----------PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRI 81 (386)
T ss_dssp EHHHHHHHHHHHHTTS-----------TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred eHHHHHHHHHHHHHhC-----------CCcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 9999999999998765 35799999999 99988865 56899999999999999999988544 44
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHH---HH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLEL---VK 182 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l---~~ 182 (253)
.++|++++++++.+++ ++++++|||.++++.|++.|.+.++ +++|||+|||| |+|+||+|+++.++ ++
T Consensus 82 --l~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~e~~~~~~~~~ 152 (386)
T 1vfs_A 82 --MCWLWTPGGPWREAIE----TDIDVSVSGMWALDEVRAAARAAGR-TARIQLKADTG--LGRNGCQPADWAELVGAAV 152 (386)
T ss_dssp --EECCCCTTCCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTS-CEEEEEEBCSS--CCSSSBCHHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhcCC-ceEEEEEEcCC--CCCCCCCHhHHHHHHHHHH
Confidence 4568889999999994 7899999999999999999988887 99999999999 99999999887444 88
Q ss_pred HHHhcCCCeeEeEEeeecCCCC--CC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 183 HVSQNCPNLEFCGLMTIGMPDY--TS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~~~--~~--~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+. .+|+|++.|||||++... +. .+..|+.+.++.+.+++ .|++. ..+|||||+++..+.+.|+++
T Consensus 153 ~i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~-~g~~~--~~~~~g~s~g~~~~~~~~~~~ 222 (386)
T 1vfs_A 153 AAQ-AEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEK-EGVDP--EVRHIANSPATLTLPETHFDL 222 (386)
T ss_dssp HHH-HTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHH-TTCCC--SEEEEECHHHHHHCGGGCSSE
T ss_pred HHH-hCCCceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEecCCHHHHcCccccCCE
Confidence 887 899999999999998732 22 35678888888888876 47664 789999999999988887764
No 8
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.97 E-value=1.4e-30 Score=243.57 Aligned_cols=197 Identities=11% Similarity=0.090 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHH-HHHcCCcccccccHHHHHHHHhcCC-CCc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLP-DDL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~-~~i 105 (253)
|+++|++|++.+++.+ +++++|++|+|+ ||+..|.+ +.++|+++|+|++++||..+++.+. .+|
T Consensus 17 dl~ai~~N~~~l~~~~----------~~~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~i 86 (391)
T 2vd8_A 17 DLDAIYNNVTHIXEFI----------PSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPI 86 (391)
T ss_dssp EHHHHHHHHHHHHHHS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCE
T ss_pred cHHHHHHHHHHHHHhc----------CCCCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCce
Confidence 9999999999998876 346899999999 99988865 5689999999999999999998853 454
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHV 184 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~i 184 (253)
.++|+.++++++.+++ ++++++|||.++++.|++ +.+.++ +++|||+|||| |+|+||+| +++.++++.+
T Consensus 87 --l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a~~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i 156 (391)
T 2vd8_A 87 --LVLGPSPPRDINVAAE----NDVALTVFQXEWVDEAIX-LWDGSS-TMXYHINFDSG--MGRIGIRERXELXGFLXSL 156 (391)
T ss_dssp --EECSCCCGGGHHHHHH----TTEEEECCCHHHHHHHHH-HCCSSC-CEEEEEEBCSS--CCSSSBCCHHHHHHHHHHH
T ss_pred --EEecCCChHHHHHHHH----CCeEEEEcCHHHHHHHHH-HHhcCC-ceEEEEEEeCC--CCCCCCCchhhHHHHHHHH
Confidence 3459999999999994 789999999999999999 877787 99999999999 99999986 8899999999
Q ss_pred HhcCCCeeEeEEeeecCCCC--CC--cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 185 SQNCPNLEFCGLMTIGMPDY--TS--TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 185 ~~~~~~L~l~GLmth~a~~~--~~--~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
. .+|+|++.|||||++... +. .+..|+.+.++.+.+++ .|++. ..+|||+|.++..+.+.+.++
T Consensus 157 ~-~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~-~g~~~--~~~~~gnS~g~~~~~~~~~~~ 224 (391)
T 2vd8_A 157 E-GAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXE-FGVDP--XFVHTANSAATLRFQGITFNA 224 (391)
T ss_dssp T-TCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHH-TTCCC--CSEECCCHHHHTTCTTCCTTE
T ss_pred h-hcCCceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHh-ccCCc--ceEEecchhHhhcCcccCCCE
Confidence 8 899999999999998732 22 44567777888888876 46654 679999999998776666543
No 9
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.97 E-value=1.4e-30 Score=243.60 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEecc----CCHHHHHH-HHHcCCcccccccHHHHHHHHhcCC-CC
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRI-RIVAVSKT----KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLP-DD 104 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v-~L~aVvK~----h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~-~~ 104 (253)
|+++|++|++.+++.+ | ++ +|++|+|+ ||...|.+ +.++|+++|+|++++||..+++.+. .+
T Consensus 13 dl~ai~~N~~~l~~~~----------~-~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~~ 81 (388)
T 1bd0_A 13 DLDAIYDNVENLRRLL----------P-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAP 81 (388)
T ss_dssp EHHHHHHHHHHHHHHS----------C-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSC
T ss_pred cHHHHHHHHHHHHHhC----------C-CCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCCC
Confidence 9999999999998876 3 67 99999999 99988855 5689999999999999999998854 35
Q ss_pred ceEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHH
Q 025380 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKH 183 (253)
Q Consensus 105 i~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~ 183 (253)
| .++|+.++++++.+++ ++++++|||+++++.|++.+ +.++ +++|||+|||| |+|+||+| +++.++++.
T Consensus 82 I--l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a-~~~~-~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~ 151 (388)
T 1bd0_A 82 I--LVLGASRPADAALAAQ----QRIALTVFRSDWLEEASALY-SGPF-PIHFHLKMDTG--MGRLGVKDEEETKRIVAL 151 (388)
T ss_dssp E--EECSCCCGGGHHHHHH----TTEEEEECCHHHHHHHHHHC-CCSS-CEEEEEEBCSS--SCSSSBCSHHHHHHHHHH
T ss_pred E--EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHh-ccCC-CeEEEEEEcCC--CCcCCCCCHHHHHHHHHH
Confidence 5 4569999999999994 78999999999999999988 7787 99999999999 99999996 889999999
Q ss_pred HHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 184 VSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 184 i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
+. .+|+|++.|||||++...+...+.|......++.+++.+|++. ..+|||+|+++..+.+.+.++
T Consensus 152 i~-~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~l~~~~g~~~--~~~~~g~S~~~~~~~~~~~~~ 217 (388)
T 1bd0_A 152 IE-RHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRP--PLVHCANSAASLRFPDRTFNM 217 (388)
T ss_dssp HH-HSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCC--SEEECCCHHHHHHCTTSCTTE
T ss_pred HH-hCCCceEEEEEEccCCCCCCCcHHHHHHHHHHHHHHhhcCCCC--CeEEecCCHHHhcCcccCCCE
Confidence 98 8999999999999987332222345555555666765336554 689999999999887766653
No 10
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.97 E-value=3.6e-30 Score=240.30 Aligned_cols=193 Identities=11% Similarity=0.107 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHH-HHHHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIR-QVYEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~-~~~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ +.+++|+||+|+ ||+..|. .+.++|+++|||++++||+.+++.+.+ ++
T Consensus 12 dl~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~i 81 (374)
T 4ecl_A 12 NLNNLEHNVNTLQKAM----------SPKCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSEI 81 (374)
T ss_dssp CHHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred cHHHHHHHHHHHHHhc----------CCCCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCCE
Confidence 9999999999999876 457899999998 9998885 466899999999999999999998654 43
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
+++|++++++++.+++ ++++++|||+++++.|++. ++ +++|||+|||| |+|+||. +++.++++.+.
T Consensus 82 --lvlg~~~~~~~~~~~~----~~i~~~v~s~~~l~~l~~~----~~-~~~v~lkvdtG--m~R~G~~-~e~~~~~~~i~ 147 (374)
T 4ecl_A 82 --LILGYTSPSRAKELCK----YELTQTLIDYRYSLLLNKQ----GY-DIKAHIKIDTG--MHRLGFS-TEDKDKILAAF 147 (374)
T ss_dssp --EECSCCCGGGHHHHHH----TTCEEEECCHHHHHHHHTT----CC-CEEEEEEEESS--SCSSSEE-SSCHHHHHHHT
T ss_pred --EEEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHhc----CC-CccEEEEEcCC--CCcCccC-HHHHHHHHHHH
Confidence 4559999999999994 7899999999999999876 76 99999999999 9999999 88999999997
Q ss_pred hcCCCeeEeEEeeecCCCCC---C----cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 186 QNCPNLEFCGLMTIGMPDYT---S----TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 186 ~~~~~L~l~GLmth~a~~~~---~----~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+|+|++.|||||++...+ . ..+.++.+.++.+.+++ .|++. ..+|+|+|+++....+.+.+|
T Consensus 148 -~~~~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~-~g~~~--~~~~~~nSa~~~~~~~~~~d~ 217 (374)
T 4ecl_A 148 -SLKHIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKS-SGLNI--PKVHIQSSYGLLNYPELECDY 217 (374)
T ss_dssp -TCTTEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCHHHHHHCTTCCCSE
T ss_pred -hCCCceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHH-cCCCC--CeEEecCCchhhcCcccCCCE
Confidence 8999999999999987332 1 23456666777777775 46654 789999999999877776654
No 11
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.97 E-value=1e-29 Score=234.61 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ |. +++++|+|+ ||...+.++ .++|+++|+|++++|+..++..+.+ ++
T Consensus 9 dl~~l~~N~~~~~~~~----------~~-~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~i 77 (361)
T 2dy3_A 9 DLDAIAHNTRVLKQMA----------GP-AKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEV 77 (361)
T ss_dssp CHHHHHHHHHHHHHHH----------TT-SEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEE
T ss_pred eHHHHHHHHHHHHHhC----------CC-cEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCCE
Confidence 9999999999999987 33 899999999 999988664 5899999999999999999987544 44
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
+++|+.++++++.+++ ++++++|||.++++.|++.+.+ +++|||+|||| |+|+||+|+++.++++.+.
T Consensus 78 --l~~~~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~~R~G~~~~~~~~~~~~~~ 145 (361)
T 2dy3_A 78 --LCWIWTPEQDFRAAID----RNIDLAVISPAHAKALIETDAE----HIRVSIKIDSG--LHRSGVDEQEWEGVFSALA 145 (361)
T ss_dssp --EECCCCTTSCHHHHHT----TTCEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--SCSSSBCHHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--CCCCCCCHHHHHHHHHHHH
Confidence 5678889999999983 7899999999999999886542 57999999999 9999999999999999998
Q ss_pred hcCCCeeEeEEeeecCCC-C-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 186 QNCPNLEFCGLMTIGMPD-Y-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 186 ~~~~~L~l~GLmth~a~~-~-~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+|+|++.|||||++.. . + ..+..|+.+.++.+.+++ .|++. ..+|||||+++..+.+.++++
T Consensus 146 -~~~~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~~~~g~s~~~~~~~~~~~~~ 212 (361)
T 2dy3_A 146 -AAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARK-HGLEC--PVNHVCNSPAFLTRSDLHMEM 212 (361)
T ss_dssp -TCTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHH-TTCCC--CSCBCCCHHHHHHCGGGCTTE
T ss_pred -hCCCCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHh-cCCCC--CeEEEeCCHHHhcCcccCCCE
Confidence 89999999999999872 2 2 256788889999988876 57754 679999999999888777653
No 12
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.96 E-value=1.6e-29 Score=235.64 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHHHHcCCcccccccHHHHHHHHhcCCC-Cce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~~~~G~~~fGen~vqEa~~~~~~~~~-~i~ 106 (253)
|+++|++|++.+++.+ | +++|++|+|+ ||+..|.+++.. +++|||++++||+.+++.+.+ +|.
T Consensus 29 dl~al~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~~Il 96 (379)
T 2rjg_A 29 NRRALRHNLQRLRELA----------P-ASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVL 96 (379)
T ss_dssp EHHHHHHHHHHHHHHS----------T-TSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEE
T ss_pred eHHHHHHHHHHHHHhC----------C-CCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCCCEE
Confidence 9999999999998875 3 6899999999 999999887766 999999999999999988544 653
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHh
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ 186 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~ 186 (253)
+++|+.++++++.+++ ++++++|||+++++.|++ + +.++ +++|||+|||| |+|+||+|+++.++++.+.
T Consensus 97 -~~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--m~R~G~~~~e~~~~~~~i~- 165 (379)
T 2rjg_A 97 -LLEGFFDARDLPTISA----QHFHTAVHNEEQLAALEE-A-SLDE-PVTVWMKLDTG--MHRLGVRPEQAEAFYHRLT- 165 (379)
T ss_dssp -ETTCCSCGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CBCEEEEBCSS--CCSSSBCHHHHHHHHHHHT-
T ss_pred -EEECCCCHHHHHHHHH----cCcEEEECCHHHHHHHHh-h-CCCC-CeEEEEEECCC--CCccCCCHHHHHHHHHHHH-
Confidence 5779999999999994 789999999999999999 6 6777 99999999999 9999999999999999998
Q ss_pred cCCC-eeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 187 NCPN-LEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 187 ~~~~-L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+|+ |++.|||||++...+...+.|....+.+.++.+. +.. . +|||||+++..+.+.|.++
T Consensus 166 ~~~~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~--l~~--~-~s~gnS~~~~~~~~~~~~~ 227 (379)
T 2rjg_A 166 QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEG--KPG--Q-RSIAASGGILLWPQSHFDW 227 (379)
T ss_dssp TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHTT--CCS--C-EECCCHHHHHHCGGGCSSE
T ss_pred hCCCcEEEEEEEEECCccCCCCcHHHHHHHHHHHHHHhc--cCC--C-eEEEECcchhcCcccCCCE
Confidence 8999 9999999999873322123344444445554432 332 3 9999999999998888764
No 13
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.96 E-value=3.1e-29 Score=231.26 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHHH-HcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQVY-EAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~~-~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++. . +++|++|+|+ ||...|.+++ ++ +++|+|++++||..++..+.+ +|
T Consensus 9 dl~~l~~N~~~l~~~-~-----------~~~l~~vvKanaYG~g~~~i~~~l~~~-~~~~~va~~~Ea~~~~~~G~~~~I 75 (357)
T 1rcq_A 9 DLQALRHNYRLAREA-T-----------GARALAVIKADAYGHGAVRCAEALAAE-ADGFAVACIEEGLELREAGIRQPI 75 (357)
T ss_dssp EHHHHHHHHHHHHHH-H-----------CSEEEEECHHHHHTTCHHHHHHHHTTT-CSEEEESSHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHhC-C-----------CCeEEEEEEeccccCCHHHHHHHHHHh-CCEEEEccHHHHHHHHhCCcCCCE
Confidence 899999999999875 2 4689999999 9999987655 67 899999999999999988544 65
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
. +++|+.++++++.+++ ++++++|||.++++.|++ + +.++ +++|||+|||| |+|+||+|+++.++++.+.
T Consensus 76 l-~~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~-a-~~~~-~~~V~l~vdtG--~~R~G~~~~~~~~~~~~i~ 145 (357)
T 1rcq_A 76 L-LLEGFFEASELELIVA----HDFWCVVHCAWQLEAIER-A-SLAR-PLNVWLKMDSG--MHRVGFFPEDFRAAHERLR 145 (357)
T ss_dssp E-ETTCCSSGGGHHHHHH----TTEEEEECSHHHHHHHHH-C-CCSS-CEEEEEEBCSS--SCSSSBCHHHHHHHHHHHH
T ss_pred E-EEeCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHh-h-ccCC-CeEEEEEEcCC--CCCCCCCHHHHHHHHHHHH
Confidence 3 5889999999999994 789999999999999999 7 7787 99999999999 9999999999999999998
Q ss_pred hcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 186 QNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 186 ~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
.+|+|++.|||||++...+...+.+....+.+..+.+. +.. . +|||||+++..+.+.|+++
T Consensus 146 -~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~~~~~--l~~--~-~s~~ns~~~~~~~~~~~~~ 206 (357)
T 1rcq_A 146 -ASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQG--LEG--E-ISLRNSPAVLGWPKVPSDW 206 (357)
T ss_dssp -HTTCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHTT--CCS--C-EECCCHHHHHHCTTSCCSE
T ss_pred -hCCCCcEEEEEEcccCCCCCCcHHHHHHHHHHHHHHhc--cCC--C-eEEEeCHHhhcCcccCCCE
Confidence 89999999999999873221112333333344444332 322 3 9999999999988877664
No 14
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.96 E-value=1e-29 Score=236.56 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+. +.+++|++|+|+||+..+ +.++++|++.|+|++++||+.++..+.+++.+ ..
T Consensus 20 dl~al~~N~~~l~~~~~---------~~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~~~il-~~ 89 (376)
T 3llx_A 20 DEAKLKSNINYLKQRVE---------SLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLY-AV 89 (376)
T ss_dssp EHHHHHHHHHHHHHHHH---------HTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEE-EE
T ss_pred cHHHHHHHHHHHHHHHH---------hCCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCCcEEE-eC
Confidence 99999999999999883 136789999999999887 45668999999999999999999886444222 23
Q ss_pred CCCCcccHHHHhh-CCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhh--HHHHHHHHHhc
Q 025380 111 GNLQSNKVKPLLA-GVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG--CLELVKHVSQN 187 (253)
Q Consensus 111 G~lq~nk~~~~~~-~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e--~~~l~~~i~~~ 187 (253)
|.. +++++.+++ .-+.++++++|||.++++.|++.+.+.++ +++|||+|||| |+|+||.|++ +..+++ .
T Consensus 90 ~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~-~~~V~l~vdtG--~~R~G~~~~~~~l~~~~~----~ 161 (376)
T 3llx_A 90 GIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQ-DFSVFIEIDSD--DHRGGIKPSDSKLLTIAK----T 161 (376)
T ss_dssp ECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--SSSSCBCTTCTHHHHHHH----H
T ss_pred CCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEEECCC--CCCCCCCCchHHHHHHHH----H
Confidence 556 789988872 00137899999999999999999998887 99999999999 9999999976 444433 3
Q ss_pred CCCeeEeEEeeecCCCC--CC-------cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHc-CCCC
Q 025380 188 CPNLEFCGLMTIGMPDY--TS-------TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRN-TLLL 252 (253)
Q Consensus 188 ~~~L~l~GLmth~a~~~--~~-------~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~-Gs~~ 252 (253)
+ +|++.|||||+++.. +. .+..|+.+.++.+.+++ .|+++ ..+|||||+++..+.+. |.++
T Consensus 162 l-~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~-~g~~~--~~vs~g~S~~~~~~~~~~~~~~ 232 (376)
T 3llx_A 162 L-GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLET-AGIHC--AITSVGSTPTAHFGEDFSDISE 232 (376)
T ss_dssp H-GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEEECCHHHHHHCSCCTTCSE
T ss_pred h-CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEEcCChhhhhhhhcCCccE
Confidence 4 899999999998732 21 34667777888888875 46654 78999999999998776 6553
No 15
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.96 E-value=5.4e-29 Score=231.94 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHH-HHHcCCcccccccHHHHHHHHhcCC-CCc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLP-DDL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~-~~i 105 (253)
|+++|++|++.+++.+ + +++|++|+|+ ||...|.+ +.++|+++|+|++++||..+++.+. .+|
T Consensus 15 dl~~l~~N~~~l~~~~----------~-~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~i 83 (380)
T 3co8_A 15 SKSSLAYNVQYTKQVS----------G-AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFI 83 (380)
T ss_dssp CHHHHHHHHHHHHHHH----------C-CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCE
T ss_pred cHHHHHHHHHHHHHhC----------C-CcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCCE
Confidence 9999999999999877 3 6799999999 99999866 4589999999999999999998754 364
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCC-hhhHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVE-PSGCLELVKHV 184 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~-p~e~~~l~~~i 184 (253)
.++|+.++++++.+++ .+++++|||+++++.|++.+. .+ +++|||+|||| |+|+||+ |+++.++++.+
T Consensus 84 --l~~g~~~~~~~~~~~~----~~i~~~vds~~~l~~l~~~a~-~~--~~~V~l~vdtG--~~R~G~~~~ee~~~~~~~i 152 (380)
T 3co8_A 84 --LILGPIDVKYAPIASK----YHFLTTVSSLDWLKSADKILG-KE--KLSVNLAVDTG--MNRIGVRSKKDLKDEIEFL 152 (380)
T ss_dssp --EECSCCCGGGHHHHHH----TTCEEEECCHHHHHHHHHHCT-TC--CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHhcc-cC--CceEEEEEcCC--CCCCCCCCHHHHHHHHHHH
Confidence 3459999999999994 689999999999999999877 54 78999999999 9999999 99999999999
Q ss_pred Hhc-CCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHc---CCCC
Q 025380 185 SQN-CPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRN---TLLL 252 (253)
Q Consensus 185 ~~~-~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~---Gs~~ 252 (253)
. . +|+|++.|||||++...+...+.|....+.+..+.+. +.. ...+|||+|+++..+.+. |.++
T Consensus 153 ~-~~~~~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~~-~~~--~~~~~~~nS~g~~~~~~~~~~~~~~ 220 (380)
T 3co8_A 153 Q-EHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDG-LIM--PRYVHVMNSGAAMYHSKELPGCNSI 220 (380)
T ss_dssp H-HCTTTEEEEEEECCCC---------CHHHHHHHHHHHTT-SCC--CSEEECBCHHHHHHCGGGCTTSCSE
T ss_pred H-hhCCCceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHhc-cCC--CCcEEEeCCHHHhcCcccccCCCce
Confidence 8 8 9999999999999873221112233333333344332 222 257999999999988777 6654
No 16
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.96 E-value=4.6e-29 Score=232.72 Aligned_cols=191 Identities=15% Similarity=0.149 Sum_probs=153.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ +.+++|+||+|+ ||+..| +.+.++|+++|||++++||+.+++.+.+ +|
T Consensus 14 dl~al~~N~~~l~~~~----------~~~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~I 83 (371)
T 3e5p_A 14 DTQAITENVQKECQRL----------PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPI 83 (371)
T ss_dssp CHHHHHHHHHHHHHSS----------CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCE
T ss_pred EHHHHHHHHHHHHHhc----------CCCCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCCE
Confidence 9999999999999877 457899999999 999888 5567899999999999999999988644 54
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHH-HHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL-NRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKH 183 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L-~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~ 183 (253)
+++|++++++++.+++ ++++++|||+++++.| ++.|.+.++ +++|||+|||| |+|+||.| +++.++++.
T Consensus 84 --lvlg~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~~a~~~~~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~ 154 (371)
T 3e5p_A 84 --LILSVVDLAYVPLLIQ----YDLSVTVATQEWLEAALQQLTPESNT-PLRVHLKVDTG--MGRIGFLTPEETKQAVRF 154 (371)
T ss_dssp --EEEEECCGGGHHHHHH----HTCEEEECCHHHHHHHHHHHCSCCSC-CBCEEEEBCSS--SCSSSBCSSHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHHcCC-ceEEEEEECCC--CCcCCCCCHHHHHHHHHH
Confidence 4558899999999984 7899999999999999 999888887 99999999999 99999999 999999999
Q ss_pred HHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHH
Q 025380 184 VSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFEL 244 (253)
Q Consensus 184 i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~ 244 (253)
+. ++|+|++.|||||++...+...+.+..-.+.|+++.+. +......+|++.|.....
T Consensus 155 i~-~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~--l~~~~~~~h~~NSa~~~~ 212 (371)
T 3e5p_A 155 VQ-SHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAV--LEELPRYVHVSNSATALW 212 (371)
T ss_dssp HH-HSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSS--CSCCCSEEECBCHHHHHH
T ss_pred HH-hCCCccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHH--hhhcCCeEEEecChhHhc
Confidence 98 89999999999999973322222222222222222221 211125689998877643
No 17
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.96 E-value=2.3e-28 Score=228.86 Aligned_cols=188 Identities=13% Similarity=0.147 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCce
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLE 106 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~ 106 (253)
|+++|++|++ +++.+ +++++|+||+|+ ||+..| +.+.++|+++|||++++||+.+|+.+.+. .
T Consensus 14 dl~al~~N~~-l~~~~----------~~~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~-~ 81 (382)
T 4a3q_A 14 DLNAVASNFK-VFSTL----------HPNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITA-K 81 (382)
T ss_dssp EHHHHHHHHH-HHHHH----------CTTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCS-E
T ss_pred EHHHHHHHHH-HHhhc----------CCCCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCC-C
Confidence 9999999999 99988 457899999998 999887 55678999999999999999999886442 2
Q ss_pred EEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEEEeCCCCCCccCCChhh-HHHHHHHH
Q 025380 107 WHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRK-PLKVLVQVNTSGEESKSGVEPSG-CLELVKHV 184 (253)
Q Consensus 107 ~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~-~~~V~lqVnTG~e~~R~Gv~p~e-~~~l~~~i 184 (253)
++++|++++++++.+++ ++++++|||.++++.|++.+.+.+ + +++|||+|||| |+|+||.|++ +.++++.+
T Consensus 82 ilvlg~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~-~~~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i 154 (382)
T 4a3q_A 82 ILVLGVLPAKDIDKAIQ----HRVALTVPSKQWLKEAIKNISGEQ-EKKLWLHIKLDTG--MGRLGIKDTNTYQEVIEII 154 (382)
T ss_dssp EEECSCCCGGGHHHHHH----TTCBEEECCHHHHHHHHHTCCTTC-CSCEEEEEEBCSS--SSSSSBCCHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHHcC-CCceeEEEEECCC--CCcCCCChHHHHHHHHHHH
Confidence 25559999999999984 789999999999999999887766 3 68999999999 9999999986 99999999
Q ss_pred HhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHH
Q 025380 185 SQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFE 243 (253)
Q Consensus 185 ~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~ 243 (253)
. ++|+|++.||||||+...+...+...++..+.+ +.+.. .. ...+|++.|....
T Consensus 155 ~-~~~~l~l~Gl~tH~a~ad~~~~~~~~Q~~~F~~-~~~~l-~~--~~~~h~aNSa~~l 208 (382)
T 4a3q_A 155 Q-QYEQLVFEGVFTHFACADEPGDMTTEQYQRFKD-MVNEA-IK--PEYIHCQNSAGSL 208 (382)
T ss_dssp H-HCTTEEEEEEECCC-------CHHHHHHHHHHH-HHTTS-CC--CSEEECCCHHHHH
T ss_pred H-hCCCceEEEEEEECcCCCCCCchHHHHHHHHHH-HHHhh-CC--CCcEEEEcChhhh
Confidence 8 899999999999999732211112233333332 22222 22 2578999887654
No 18
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.96 E-value=1.8e-28 Score=229.19 Aligned_cols=187 Identities=15% Similarity=0.156 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHcCCcccccccHHHHHHHHhcC-CCCc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-PDDL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~-~~~i 105 (253)
|+++|++|++.+++.+ +. ++|+||+|+ ||+..+ +.+.++|+++|||++++||+.+++.+ .+.
T Consensus 26 dl~al~~N~~~l~~~~----------~~-~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~- 93 (376)
T 3kw3_A 26 DVRAIVANYRTLAQHV----------AP-TECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENV- 93 (376)
T ss_dssp CHHHHHHHHHHHHHHH----------TT-SEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSC-
T ss_pred cHHHHHHHHHHHHHhC----------CC-CEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCC-
Confidence 9999999999999988 34 899999997 999887 56778999999999999999999876 442
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
.++++|++++++++.+++ ++++++|||.++++.|++.|.+.++ +++|||+|||| |+|+||.|+++.++++.+.
T Consensus 94 ~ilvl~~~~~~~~~~~~~----~~i~~~V~s~~~l~~l~~~a~~~~~-~~~V~lkVdtG--m~R~G~~~~e~~~l~~~i~ 166 (376)
T 3kw3_A 94 MIALLNGFPHKAEEFVAQ----SGIIPLLNSWSTIEDWQTLCQKKNK-KFPAIIQVDTN--MSRLGLDKKELQKLIKNPT 166 (376)
T ss_dssp EEEETTCCCTTCHHHHHH----TTCEEEECSHHHHHHHHHHHHHHTC-CCEEEEEBCSS--CCSSSBCHHHHHHHHHCCT
T ss_pred CEEEEeCCCHHHHHHHHH----CCCEEEECCHHHHHHHHHHHHHcCC-CeEEEEEECCC--CCcccCCHHHHHHHHHHHH
Confidence 336778899999998884 7899999999999999999998897 99999999999 9999999999999999887
Q ss_pred hcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchH
Q 025380 186 QNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDF 242 (253)
Q Consensus 186 ~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~ 242 (253)
.+|+|++.|||||++...+.....+..=.+.|+++.+.+. . .. .|++.|...
T Consensus 167 -~~~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~-~--~~-~h~aNSa~~ 218 (376)
T 3kw3_A 167 -IFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP-T--CK-VSFANSGGI 218 (376)
T ss_dssp -HHHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC-C--CC-EECCCHHHH
T ss_pred -hCCCCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc-C--CC-EEEEeChhh
Confidence 7899999999999997332212222222222333333221 1 12 788888654
No 19
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.95 E-value=8e-28 Score=224.03 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCC-Cc
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPD-DL 105 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~-~i 105 (253)
|+++|++|++.+++.+ +.+++|+||+|+ ||+..|.++ .++ +++|||++++||+.+++.+.+ +|
T Consensus 14 dl~al~~N~~~l~~~~----------~~~~~l~aVvKanaYGhg~~~va~~l~~~-~~~f~va~~~Ea~~lr~~G~~~~i 82 (367)
T 3mub_A 14 HLGAIRQNIQQMGAHI----------PQGTLKLAVVKANAYGHGAVAVAKAIQDD-VDGFCVSNIDEAIELRQAGLSKPI 82 (367)
T ss_dssp CHHHHHHHHHHHHHTS----------CTTCEEEEECHHHHHTTCHHHHHHHHGGG-CSEEEESSHHHHHHHHHTTCCSCE
T ss_pred eHHHHHHHHHHHHHhC----------CCCCEEEEEECcccccCCHHHHHHHHHHh-CCeEEEeEHHHHHHHHHcCCCCCE
Confidence 9999999999999877 457899999998 999988654 567 999999999999999998654 54
Q ss_pred eEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCCh-hhHHHHHHHH
Q 025380 106 EWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEP-SGCLELVKHV 184 (253)
Q Consensus 106 ~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p-~e~~~l~~~i 184 (253)
+++|++++++++.+++ ++++++|||.++++.|++.+.+. + +++|||+|||| |+|+||.| +++.++++.+
T Consensus 83 --lvlg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~a~~~-~-~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i 152 (367)
T 3mub_A 83 --LILGVSEIEAVALAKE----YDFTLTVAGLEWIQALLDKEVDL-T-GLTVHLKIDSG--MGRIGFREASEVEQAQDLL 152 (367)
T ss_dssp --EEEEECCGGGHHHHHH----TTEEEEECCHHHHHHHHHTTCCC-T-TCEEEEEECSS--CCSSSBCSHHHHHHHHHHH
T ss_pred --EEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHHHhc-C-CeeEEEEECCC--CCcCCCCcHHHHHHHHHHH
Confidence 4558899999999984 79999999999999999988776 7 89999999999 99999999 9999999999
Q ss_pred HhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHH
Q 025380 185 SQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFEL 244 (253)
Q Consensus 185 ~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~ 244 (253)
. + |+|++.|||||++...+...+.+..=.+.|+++.+...-. ...+|++.|.....
T Consensus 153 ~-~-~~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~--~~~~h~~NSa~~l~ 208 (367)
T 3mub_A 153 Q-Q-HGVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKEV--PELVHASNSATTLW 208 (367)
T ss_dssp H-H-TTCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSSC--CSEEEEECHHHHHH
T ss_pred c-c-CCcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhhc--CCeEEEecChHHhc
Confidence 8 8 9999999999999733221122221122223333222111 25688888876543
No 20
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.95 E-value=4.2e-28 Score=224.56 Aligned_cols=201 Identities=14% Similarity=0.108 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+. +.++++++|+|+|+...+.++ .++|+++|+|++++|+..++..+.+++.| +.
T Consensus 18 dl~~l~~N~~~l~~~~~---------~~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~ii~-~~ 87 (376)
T 3anu_A 18 DRTTARRNAERMRERCR---------ALGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFDDILL-AY 87 (376)
T ss_dssp EHHHHHHHHHHHHHHHH---------HHTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCEEEEE-EE
T ss_pred eHHHHHHHHHHHHHHHH---------HcCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCCeEEE-EC
Confidence 99999999999999873 126799999999999988665 47899999999999999999876545433 45
Q ss_pred CCCCcccHHHHhh-CCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhh--HHHHHHHHHhc
Q 025380 111 GNLQSNKVKPLLA-GVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG--CLELVKHVSQN 187 (253)
Q Consensus 111 G~lq~nk~~~~~~-~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e--~~~l~~~i~~~ 187 (253)
|.. +++++.+++ .....+++++|||.++++.|++.+.+.++ +++|+|+|||| |+|+||+|++ +.++++.+. +
T Consensus 88 ~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~-~~~V~l~vd~g--~~R~G~~~~~~~~~~l~~~i~-~ 162 (376)
T 3anu_A 88 PVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGK-RWLVWLKLDCG--NGRAGVRPTDPAALELAQAIA-N 162 (376)
T ss_dssp ECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTC-CEEEEEEECCC----CSSBCTTSHHHHHHHHHHH-H
T ss_pred CCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCC-ceEEEEEECCC--CCcCCCCCCchhHHHHHHHHh-C
Confidence 777 899998882 00015789999999999999998877787 99999999999 9999999987 999999998 8
Q ss_pred CC---CeeEeEEeeecCCC---CCC------cHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcch-HHHHHH-cCCC
Q 025380 188 CP---NLEFCGLMTIGMPD---YTS------TPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGD-FELAVR-NTLL 251 (253)
Q Consensus 188 ~~---~L~l~GLmth~a~~---~~~------~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D-~~~Ai~-~Gs~ 251 (253)
| +|++.|||||.++. .+. .+..|+.+.++.+.+++ .|++. ..+|+|+|++ +..+.+ .+.+
T Consensus 163 -~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~vs~Ggs~~~~~~~~~~~~~~ 236 (376)
T 3anu_A 163 -DAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQ-AGVPC--PQASIGSTPSCSHPIPEMSQLT 236 (376)
T ss_dssp -SCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEEECCHHHHHSCCGGGGGSS
T ss_pred -CCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEEccCHHHhhhhhhcCCce
Confidence 9 99999999996641 111 22467788888888876 47764 7899999999 876655 3443
No 21
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.95 E-value=4.7e-27 Score=220.86 Aligned_cols=183 Identities=16% Similarity=0.174 Sum_probs=145.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecc----CCHHHH-HHHHHc-CCcccccccHHHHHHHHhcCCC-C
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKT----KPVSVI-RQVYEA-GHRCFGENYVQEIVEKAAQLPD-D 104 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~----h~~~~i-~~~~~~-G~~~fGen~vqEa~~~~~~~~~-~ 104 (253)
|+++|++|++.+++. . ++++|+||+|+ ||+..| +.++++ |+++|||++++||+.+|+.+.+ +
T Consensus 15 dl~al~~N~~~l~~~-~----------~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~~ 83 (395)
T 3hur_A 15 DLDAAAHNLQEIREW-T----------KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLP 83 (395)
T ss_dssp EHHHHHHHHHHHHHH-H----------TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSC
T ss_pred eHHHHHHHHHHHHhc-C----------CCCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCCC
Confidence 999999999999886 2 46899999997 999887 556789 9999999999999999998654 4
Q ss_pred ceEEeeCCCCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhh-HHHHHHH
Q 025380 105 LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSG-CLELVKH 183 (253)
Q Consensus 105 i~~h~IG~lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e-~~~l~~~ 183 (253)
| +++|++++++++.+++ ++++++|+|.++++.|++. . + +++|||||||| |+|+||.|++ +.++++.
T Consensus 84 I--lvlg~~~~~~~~~~~~----~~l~~~V~s~~~l~~l~~~-~--~--~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~ 150 (395)
T 3hur_A 84 I--WVLGAWDYSDLKLFID----HDIVITIPSLAWLQNLPDF-E--G--TLKVSLAIDTG--MTRIGFDKADEISAAKKI 150 (395)
T ss_dssp E--EESSCCCGGGHHHHHH----TTEEEEECCHHHHHTCCCC-S--S--CEEEEEEBCCS--SCSSSBCCHHHHHHHHHH
T ss_pred E--EEEcCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHh-c--C--CCcEEEEEcCC--CCCcCCChHHHHHHHHHH
Confidence 4 5669999999999984 8999999999999999876 3 4 78999999999 9999999987 9999999
Q ss_pred HHhcCCCeeEeEEeeecCCCCCCcHH---H-HHHHHHHHHHHHHHhCCCCCCCeeeccCcchH
Q 025380 184 VSQNCPNLEFCGLMTIGMPDYTSTPE---N-FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDF 242 (253)
Q Consensus 184 i~~~~~~L~l~GLmth~a~~~~~~~~---~-F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~ 242 (253)
+. ++|+|++.||||||+...+...+ . ..++..+ +.+.+.+.+. ....|++-|.-.
T Consensus 151 i~-~~~~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F-~~~~~~l~~~--~~~~h~aNSa~~ 209 (395)
T 3hur_A 151 ID-KNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW-QELTINQGFD--PSLFSMANSATC 209 (395)
T ss_dssp HH-HCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHH-HHHHTTSCCC--GGGEECCCHHHH
T ss_pred HH-hCCCceEEEEEEeCcCCCCCCCcchHHHHHHHHHH-HHHHHhccCC--CCeEEEcCCHHH
Confidence 98 89999999999999983332222 2 2233333 3333222221 245777776543
No 22
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.93 E-value=2.6e-25 Score=208.78 Aligned_cols=188 Identities=13% Similarity=0.081 Sum_probs=151.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+ + ++++++|+|+++...| +.+.++|+ +|+|++++|+..++..+.++-.|+|.
T Consensus 40 dl~~l~~N~~~l~~~~----------~-~~~l~~vvKan~~~~v~~~l~~~G~-~~~vas~~E~~~~~~~G~~~~~Il~~ 107 (420)
T 2p3e_A 40 SSNFIKERFEAYRKAF----------P-DALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLAKKAGIPPERIVYA 107 (420)
T ss_dssp EHHHHHHHHHHHHHHS----------T-TSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred EHHHHHHHHHHHHHhC----------C-cCeEEEEEecCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChhHEEEe
Confidence 9999999999998876 2 4699999999999887 55678999 99999999999999875443246888
Q ss_pred CCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceE------------EEEEeCCCCCCccCCChhh
Q 025380 111 GNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKV------------LVQVNTSGEESKSGVEPSG 176 (253)
Q Consensus 111 G~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V------------~lqVnTG~e~~R~Gv~p~e 176 (253)
|+. ++++++.+++ .++ +++|||.++++.|++.+.+.++ +++| |++||||.+.+|+||+|++
T Consensus 108 g~~~~~~~l~~a~~----~~i~~~~vds~~~l~~l~~~a~~~~~-~~~v~lRvn~~~~~~~~~~idtG~~~~R~G~~~~e 182 (420)
T 2p3e_A 108 GVGKTEKELTDAVD----SEILMFNVESRQELDVLNEIAGKLGK-KARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIRE 182 (420)
T ss_dssp SSCCCHHHHHHHHH----TTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEEC----------------CCSCEEGGG
T ss_pred CCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHHHHhcCC-CCcEEEEECCCCCCCCCcccccCCCCCCCCCCHHH
Confidence 984 7889999884 678 7999999999999999988887 8999 8888888333999999999
Q ss_pred HHHHHHHHHhcCCCeeEeEEeeecCC-C--CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 177 CLELVKHVSQNCPNLEFCGLMTIGMP-D--YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 177 ~~~l~~~i~~~~~~L~l~GLmth~a~-~--~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
+.++++.+. .+|+|++.|||||++. + .+...+.|+.+.++.+.+++. |++. ..+|+|.|.
T Consensus 183 ~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~l~~Ggg~ 245 (420)
T 2p3e_A 183 AQKEYEYAS-KLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQK-GFDI--KYLDIGGGL 245 (420)
T ss_dssp HHHHHHHHH-TCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHT-TCCC--CEEECCCCB
T ss_pred HHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CEEEECCCc
Confidence 999999998 8999999999999986 2 233467888889998888874 6654 688998553
No 23
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.93 E-value=6.5e-25 Score=207.05 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+.+++...+ .++++++|+|+++...|.+ +.++|+ +|.+++++|+..++..+.++-.|+|+
T Consensus 36 dl~~l~~n~~~l~~~~~~a~~~~~---~~~~~~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~ 111 (434)
T 1twi_A 36 SEEQIKINYNRYIEAFKRWEEETG---KEFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVPSKKIVFN 111 (434)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHS---CCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred EHHHHHHHHHHHHHhhhhhhcccC---CCeEEEEEEccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHCCCCCCcEEEE
Confidence 999999999999999876666543 3689999999999988855 568999 99999999999999876443467999
Q ss_pred CCCC-cccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCC------------CCCccCCChhh
Q 025380 111 GNLQ-SNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------------EESKSGVEPSG 176 (253)
Q Consensus 111 G~lq-~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~------------e~~R~Gv~p~e 176 (253)
|+.+ .++++.+++ .++ +++|||.++++.|++.+.+.++ +++|+|+||+|. +++|+|+++++
T Consensus 112 g~~k~~~~i~~a~~----~~i~~~~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~~ 186 (434)
T 1twi_A 112 GNCKTKEEIIMGIE----ANIRAFNVDSISELILINETAKELGE-TANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES 186 (434)
T ss_dssp CSSCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTT
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCCCCCcccccCCCCCCccCChhh
Confidence 9975 477888874 677 8999999999999999988887 999999999873 47999999999
Q ss_pred --HHHHHHHHHhcCCCeeEeEEeeecCC-CC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 177 --CLELVKHVSQNCPNLEFCGLMTIGMP-DY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 177 --~~~l~~~i~~~~~~L~l~GLmth~a~-~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
+.++++.+. .+|+|++.|||||++. +. +..+..|+.+.++++.+++. |++. ..||||.+
T Consensus 187 ~~~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~l~~GGg 250 (434)
T 1twi_A 187 GIAMKAIKMAL-EMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEE-GIEI--EDVNLGGG 250 (434)
T ss_dssp SHHHHHHHHHH-HCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCCC--SEEECCCC
T ss_pred hHHHHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCC--CEEEECCC
Confidence 999999998 8999999999999765 32 23467899999999999874 7764 78999987
No 24
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.93 E-value=2e-24 Score=203.32 Aligned_cols=189 Identities=12% Similarity=0.082 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+ +.++++++|+|+++...|.+ +.++| .+|.++++.|+...+..+.++-.|+|+
T Consensus 23 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~I~~~ 91 (428)
T 2j66_A 23 DGDFIEAHYRQLRSRT----------NPAIQFYLSLKANNNIHLAKLFRQWG-LGVEVASAGELALARHAGFSAENIIFS 91 (428)
T ss_dssp EHHHHHHHHHHHHHTS----------CTTEEEEEEGGGCCCHHHHHHHHHTT-CEEEESSHHHHHHHHHTTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeeeCCCHHHHHHHHHcC-CeEEEeCHHHHHHHHHcCCCcCeEEEe
Confidence 9999999999998876 34789999999999988855 45789 699999999999998876443357999
Q ss_pred CCCCc-ccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCC-----------CCCccCCChhhH
Q 025380 111 GNLQS-NKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG-----------EESKSGVEPSGC 177 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~-----------e~~R~Gv~p~e~ 177 (253)
|+.++ ++++.+++ .++ +++|||.++++.|++.+.+.++ +++|+|+||+|. +.+|+|++++++
T Consensus 92 g~~k~~~~i~~a~~----~~v~~~~vds~~el~~l~~~a~~~~~-~~~V~lrvn~g~~~~~~~~~~~~~~srfG~~~~e~ 166 (428)
T 2j66_A 92 GPGKKRSELEIAVQ----SGIYCIIAESVEELFYIEELAEKENK-TARVAIRINPDKSFGSTAIKMGGVPRQFGMDESML 166 (428)
T ss_dssp CSCCCHHHHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSSCC--CCCSSSCCCCSSSEEGGGH
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CceEEEEEcCCCCCCCCccccCCCCCCCCCCHHHH
Confidence 99865 78888884 677 9999999999999999988887 999999999982 238999999999
Q ss_pred HHHHHHHHhcCCCeeEeEEeeecCC-CC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 178 LELVKHVSQNCPNLEFCGLMTIGMP-DY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 178 ~~l~~~i~~~~~~L~l~GLmth~a~-~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
.++++.+. .+|+|++.|||||++. +. +..+..|+.+.++++.+++..|++. ..||||.+
T Consensus 167 ~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~l~~GGG 228 (428)
T 2j66_A 167 DAVMDAVR-SLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVC--ECINLGGG 228 (428)
T ss_dssp HHHHHHHH-HCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCC--SEEECCCC
T ss_pred HHHHHHHH-hCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEeCCC
Confidence 99999998 8999999999999765 32 2345778999999999965568764 78999876
No 25
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.92 E-value=2.3e-24 Score=203.28 Aligned_cols=188 Identities=15% Similarity=0.075 Sum_probs=159.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeccCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~-~v~L~aVvK~h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~ 109 (253)
|+++|++|++.+++.+ +. ++++++|+|+++...|.++ .++|+ +|.++++.|+...+..+.++-.|+|
T Consensus 39 dl~~i~~N~~~l~~~~----------~~~~~~l~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~i~~ 107 (425)
T 2qgh_A 39 DFDKIKQAFLNYKEAF----------KGRKSLICYALKANSNLSILSLLAHLES-GADCVSIGEIQRALKAGIKPYRIVF 107 (425)
T ss_dssp EHHHHHHHHHHHHHTT----------CSSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGEEE
T ss_pred EHHHHHHHHHHHHHhc----------CcCCCEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCChhHEEE
Confidence 9999999999998876 22 6799999999999888554 58999 9999999999999887544335788
Q ss_pred eCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCChh
Q 025380 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEPS 175 (253)
Q Consensus 110 IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~p~ 175 (253)
.|+. ++++++.+++ .++ .++|||.++++.|++.+.+.++ +++|+|+|||| ++|+|+|++++
T Consensus 108 ~g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~ 182 (425)
T 2qgh_A 108 SGVGKSAFEIEQALK----LNILFLNVESFMELKTIETIAQSLGI-KARISIRINPNIDAKTHPYISTGLKENKFGVGEK 182 (425)
T ss_dssp CCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHH
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHHHHhcCC-CceEEEEEeCCCCCCCCcccccCCCCCCCcCCHH
Confidence 8976 5688999884 556 5799999999999999988887 99999999986 56999999999
Q ss_pred hHHHHHHHHHhcCCCeeEeEEeeecCC-CC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 176 GCLELVKHVSQNCPNLEFCGLMTIGMP-DY--TSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 176 e~~~l~~~i~~~~~~L~l~GLmth~a~-~~--~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
++.++++.+. .+|+|++.|||||++. +. +..+..|+.+.++++.+++ .|++. ..||||.+
T Consensus 183 e~~~l~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~l~~GGG 245 (425)
T 2qgh_A 183 EALEMFLWAK-KSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIA-LGIDL--RFFDVGGG 245 (425)
T ss_dssp HHHHHHHHHH-HCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCC
T ss_pred HHHHHHHHHH-hCCCccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEECCC
Confidence 9999999998 8999999999999765 32 3456789999999999987 47654 78999966
No 26
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.90 E-value=3.6e-23 Score=197.58 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+ +.++++++|+|+++...|.++ .++|+ +|.+++..|+...+..+.++-.|+|.
T Consensus 48 d~~~l~~n~~~l~~~~----------~~~~~i~~avKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~ 116 (467)
T 2o0t_A 48 DEDDFRSRCRETAAAF----------GSGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFPPERITLH 116 (467)
T ss_dssp EHHHHHHHHHHHHHHT----------SSGGGBEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhc----------CCCcEEEEEeccCCCHHHHHHHHHcCC-eEEEeCHHHHHHHHHcCCCcccEEEe
Confidence 9999999999998876 346889999999999888554 58999 99999999999988875443356899
Q ss_pred CCCCc-ccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCCh--
Q 025380 111 GNLQS-NKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVEP-- 174 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~p-- 174 (253)
|+.++ ++++.+++ .++ .++|||.++++.|++.+.+.++ +++|+|+|||| ++|+|+|+++
T Consensus 117 g~~k~~~~i~~a~~----~gv~~i~vds~~el~~l~~~a~~~~~-~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~~ 191 (467)
T 2o0t_A 117 GNNKSVSELTAAVK----AGVGHIVVDSMTEIERLDAIAGEAGI-VQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVAS 191 (467)
T ss_dssp CTTCCHHHHHHHHH----HTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEEECSEEEEETEEEEESSCCSSSSEETTT
T ss_pred CCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhhCC-CCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCCH
Confidence 99765 88988884 566 7899999999999999988887 99999999985 5699999987
Q ss_pred hhHHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhC----CCCCCCeeeccCc
Q 025380 175 SGCLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALG----IPEEQCDLSMGMS 239 (253)
Q Consensus 175 ~e~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~----~~~~~~~LSmGMS 239 (253)
+++.++++.+. .+|+|++.|||+|++. +.+..++.|+.+.++.+.+++.+| ++. ..|+||.-
T Consensus 192 ~e~~~~~~~~~-~~~~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~--~~ln~GGG 260 (467)
T 2o0t_A 192 GAAMAAVRRVF-ATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQI--ATVDLGGG 260 (467)
T ss_dssp THHHHHHHHHH-HCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTC--CEEECCCC
T ss_pred HHHHHHHHHHH-hCCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CEEEeCCC
Confidence 57999999997 8999999999999765 233456889999999999875567 654 78998864
No 27
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.88 E-value=1.5e-21 Score=185.61 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-C-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-D-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~h 108 (253)
|+++|++|++.+++.+. +.++++++++|+++...|.+ +.+.|+ +|.+++..|+...+..+.+ + | .
T Consensus 55 d~~~l~~n~~~l~~~~~---------~~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--~ 122 (443)
T 3vab_A 55 SRATIERHFRVFHDAFA---------DMDTLVTYALKANSNQAVLTALAKLGA-GADTVSQGEIRRALAAGIPANRI--V 122 (443)
T ss_dssp EHHHHHHHHHHHHHHTT---------TSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGE--E
T ss_pred EHHHHHHHHHHHHHhhc---------cCCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCChhhE--E
Confidence 99999999999998771 12579999999999988744 567898 9999999999998887543 3 5 5
Q ss_pred eeCCC-CcccHHHHhhCCCCccEE-EEeCCHHHHHHHHHHHHhcCCCcceEEEEEeC------------CCCCCccCCCh
Q 025380 109 FIGNL-QSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT------------SGEESKSGVEP 174 (253)
Q Consensus 109 ~IG~l-q~nk~~~~~~~~~~~~li-~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnT------------G~e~~R~Gv~p 174 (253)
|.|+. +.+.++.+++ .++. .+|||.++++.|++.+.+.++ +++|+|+||+ |++++|+|+++
T Consensus 123 ~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~ 197 (443)
T 3vab_A 123 FSGVGKTPREMDFALE----AGIYCFNVESEPELEILSARAVAAGK-VAPVSLRINPDVDAKTHAKISTGKSENKFGIPR 197 (443)
T ss_dssp EECTTCCHHHHHHHHH----HTCSEEEECCHHHHHHHHHHHHHHTC-CEEEEEEEECCBCTTTCCBC---CCCCSSSEEG
T ss_pred EcCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHHhcCC-CceEEEEECCCCCCCCCcccccCCCCCCCcCCH
Confidence 66875 5567887774 5664 999999999999999998887 9999999985 44569999999
Q ss_pred hhHHHHHHHHHhcCCCeeEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 175 SGCLELVKHVSQNCPNLEFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 175 ~e~~~l~~~i~~~~~~L~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
+++.++++.+. .+|+|++.|||+|++. +.+..+..|+.+.++++.+++ .|++. ..|+||.
T Consensus 198 ~e~~~ll~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~-~G~~l--~~ldiGG 260 (443)
T 3vab_A 198 DKARAAYARAA-SLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQA-DGHNI--RHVDVGG 260 (443)
T ss_dssp GGHHHHHHHHH-HSTTEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCC
T ss_pred HHHHHHHHHHh-hCCCceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCC
Confidence 99999999998 8999999999999875 333467889999999999986 47764 8999886
No 28
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.88 E-value=1.6e-21 Score=185.23 Aligned_cols=185 Identities=18% Similarity=0.162 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-C-ceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-D-LEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~-~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~ 107 (253)
|+++|++|++.+++.+ |. ++++++++|+++...|.+ +.+.|+ +|.++++.|+...+..+.+ + |
T Consensus 58 dl~~l~~n~~~l~~~~----------~~~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I-- 124 (441)
T 3n2b_A 58 SRATLERHWHAFDKSV----------GDYPHLICYAVKANSNLGVLNTLARLGS-GFDIVSVGELERVLAAGGDPSKV-- 124 (441)
T ss_dssp EHHHHHHHHHHHHHHT----------TTSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCCGGGE--
T ss_pred EHHHHHHHHHHHHHhh----------ccCCcEEEEEeccCCCHHHHHHHHHcCC-cEEEeCHHHHHHHHHcCCCcccE--
Confidence 9999999999999877 22 579999999999988744 567898 9999999999998887543 3 4
Q ss_pred EeeCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------------CCCCccCCC
Q 025380 108 HFIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------------GEESKSGVE 173 (253)
Q Consensus 108 h~IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------------~e~~R~Gv~ 173 (253)
.|.|+. +.+.++.+++ .++ +.+|||.++++.|++.+.+.++ +++|+|+||++ ++++|+|++
T Consensus 125 ~~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~a~~~~~-~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~ 199 (441)
T 3n2b_A 125 VFSGVGKTEAEMKRALQ----LKIKCFNVESEPELQRLNKVAGELGV-KAPISLRINPDVDAKTHPYISTGLRDNKFGIT 199 (441)
T ss_dssp EECCTTCCHHHHHHHHH----TTCSEEEECSHHHHHHHHHHHHHHTC-CEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBC
T ss_pred EEcCCCCCHHHHHHHHH----CCCCEEEEcCHHHHHHHHHHHHhcCC-CcEEEEEeccCCCcCCCcccccCCCCCcccCC
Confidence 566774 4567888874 566 5899999999999999998887 99999999965 347999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
++++.++++.+. .+|+|++.|||+|++.. .+..+..|+.+.++++++++ .|++. ..|+||.
T Consensus 200 ~~~~~~~~~~~~-~~~~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~-~G~~l--~~LdiGG 263 (441)
T 3n2b_A 200 FDRAAQVYRLAH-SLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKA-EGIHI--RHLDVGG 263 (441)
T ss_dssp GGGHHHHHHHHH-HCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCS
T ss_pred HHHHHHHHHHHh-cCCCeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEECC
Confidence 999999999997 89999999999998763 23457889999999999986 57764 8999986
No 29
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.87 E-value=2.6e-21 Score=178.96 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+ +++++++|+|+++...+ +.+.++|+ +|+|+++.|+..++..+.++=.++|.
T Consensus 23 dl~~l~~N~~~l~~~~-----------~~~~~~~~vKan~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I~~~ 90 (372)
T 2nva_A 23 SPKIVEDLIDQWTILF-----------PRVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVSPSRIIFA 90 (372)
T ss_dssp CHHHHHHHHHHHHHHC-----------TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhC-----------CCCeEEEEeeeCCCHHHHHHHHHcCC-cEEEcCHHHHHHHHHcCCCHHHEEEC
Confidence 9999999999998865 36899999999999887 55668999 99999999999999875432123677
Q ss_pred CCCC-cccHHHHhhCCCCccEE-EEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC------CCccCCChhhHHHHHH
Q 025380 111 GNLQ-SNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLELVK 182 (253)
Q Consensus 111 G~lq-~nk~~~~~~~~~~~~li-~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e------~~R~Gv~p~e~~~l~~ 182 (253)
|+.+ +++++.+++ .++. .+|||.++++.|++.+. .++|+|+||+|.+ ++|+|++++++.++++
T Consensus 91 ~~~k~~~~l~~a~~----~~v~~~~vds~~~l~~l~~~~~-----~~~v~lrv~~~~~~~~~~~~~R~G~~~~~~~~~~~ 161 (372)
T 2nva_A 91 HTMKTIDDLIFAKD----QGVDIATFDSSFELDKIHTYHP-----NCKMILRIRCDDPNATVQLGNKFGANEDEIRHLLE 161 (372)
T ss_dssp CSCCCHHHHHHHHH----HTCCEEEECSHHHHHHHHHHCT-----TCEEEEEBCCCCTTCSBCCTTTSSBCGGGHHHHHH
T ss_pred CCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhCC-----CCeEEEEEecCCCCCcccCCCCCCCCHHHHHHHHH
Confidence 8874 577888874 5663 89999999999987642 4689999999931 2999999999999999
Q ss_pred HHHhcCCCeeEeEEeeecCC-CCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 183 HVSQNCPNLEFCGLMTIGMP-DYT--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~-~~~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
.+. .. +|++.|||||++. +.+ .....++.+.++++.+++ .|++. ..+++|.+
T Consensus 162 ~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~--~~~~~GGg 216 (372)
T 2nva_A 162 YAK-QL-DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAIS-VGHKP--YILDIGGG 216 (372)
T ss_dssp HHH-HT-TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCSC
T ss_pred HHH-Hc-CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--cEEEeCCC
Confidence 997 76 9999999999876 322 235668888888888876 57764 78998876
No 30
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.85 E-value=1.4e-20 Score=177.54 Aligned_cols=182 Identities=17% Similarity=0.188 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|+++|++|++.+++.+ | ++++++|+|+++...+ +.+.++| .+|+|+++.|+...+..+.++=.++|.
T Consensus 61 dl~~l~~N~~~l~~~~----------~-~~~i~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~r~~G~~~~~Il~~ 128 (419)
T 2plj_A 61 DCDVIRQQYRALKNAL----------P-NVTLHYALKPLPHPVVVRTLLAEG-ASFDLATTGEVELVASEGVPADLTIHT 128 (419)
T ss_dssp EHHHHHHHHHHHHHHS----------T-TEEEEEESTTCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGGEEEC
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeccCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhEEEe
Confidence 9999999999998866 3 5899999999999887 5566889 899999999999999875432123677
Q ss_pred CCC-CcccHHHHhhCCCCccEE-EEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC------CCccCCChhhHHHHHH
Q 025380 111 GNL-QSNKVKPLLAGVPNLAMV-ESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLELVK 182 (253)
Q Consensus 111 G~l-q~nk~~~~~~~~~~~~li-~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e------~~R~Gv~p~e~~~l~~ 182 (253)
|+. .+++++.+++ .++. ++|||.++++.|++.+ . .++|+|+||||.+ |+|+|++++++.++++
T Consensus 129 g~~k~~~~l~~a~~----~~v~~~~vds~~el~~l~~~a----~-~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~ 199 (419)
T 2plj_A 129 HPIKRDADIRDALA----YGCNVFVVDNLNELEKFKAYR----D-DVELLVRLSFRNSEAFADLSKKFGCSPEQALVIIE 199 (419)
T ss_dssp CSSCCHHHHHHHHH----HTCCEEEECSHHHHHTTGGGT----T-TCEEEEEBCC---------CCCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhc----C-CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 875 4577888874 5664 9999999999998754 2 4689999999865 8999999999999999
Q ss_pred HHHhcCCCeeEeEEeeecCC-CCC--CcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccCc
Q 025380 183 HVSQNCPNLEFCGLMTIGMP-DYT--STPENFKTLAKCRSEVCKALGI-PEEQCDLSMGMS 239 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~-~~~--~~~~~F~~l~~~~~~l~~~~~~-~~~~~~LSmGMS 239 (253)
.+. .. +|++.|||||++. +.+ .....++.+.++++.+++ .|+ +. ..+++|.+
T Consensus 200 ~~~-~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~--~~l~~GGG 255 (419)
T 2plj_A 200 TAK-EW-NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVE-RGLPAL--STLDIGGG 255 (419)
T ss_dssp HHH-HT-TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHH-TTCCCC--CEEECCCC
T ss_pred HHH-hC-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCC--CEEEECCC
Confidence 997 76 9999999999987 322 235677788888888875 577 54 67887665
No 31
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.81 E-value=7.2e-19 Score=165.88 Aligned_cols=181 Identities=12% Similarity=0.075 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-CceEEe
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHF 109 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~i~~h~ 109 (253)
|+++|++|++.+++.+ | ++++++|+|+++...+ +.+.++| .+|+|+++.|+...+..+.+ ++ ..|
T Consensus 44 dl~~l~~n~~~~~~~~----------~-~~~~~~avKAn~~~~v~~~l~~~G-~g~~vas~~E~~~~~~~G~~~~~-iv~ 110 (425)
T 1f3t_A 44 DLGDIVRKHETWKKCL----------P-RVTPFYAVKCNDDWRVLGTLAALG-TGFDCASNTEIQRVRGIGVPPEK-IIY 110 (425)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHTT-CEEEECSHHHHHHHHHTTCCGGG-EEE
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhh-EEE
Confidence 9999999999998765 2 5799999999999887 4456789 79999999999999987543 42 244
Q ss_pred eCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCC------CCCccCCChhhHHHHH
Q 025380 110 IGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------EESKSGVEPSGCLELV 181 (253)
Q Consensus 110 IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~------e~~R~Gv~p~e~~~l~ 181 (253)
-|+. ....+..+++ .++ ..+|||.++++.|++.+ . +++|||+||||. .|+|+|++++++.+++
T Consensus 111 ~g~~k~~~~l~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~~~~ 181 (425)
T 1f3t_A 111 ANPCKQISHIRYARD----SGVDVMTFDCVDELEKVAKTH----P-KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFIL 181 (425)
T ss_dssp CCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC----------CCSCBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhC----C-CCcEEEEEcCCCCCccCCCCCcCCCCHHHHHHHH
Confidence 4665 4456777774 667 69999999999998753 3 679999999982 2799999999999999
Q ss_pred HHHHhcCCCeeEeEEeeecCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 182 KHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 182 ~~i~~~~~~L~l~GLmth~a~~~-~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
+.+. .. +|++.|||||++... + .....++.+..+.+.+++ .|++. ..+++|.+
T Consensus 182 ~~~~-~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~--~~l~iGGG 237 (425)
T 1f3t_A 182 EQAK-KL-NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTE-LGFNM--HILDIGGG 237 (425)
T ss_dssp HHHH-HT-TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCCC
T ss_pred HHHH-hC-CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCCC
Confidence 9987 76 999999999998632 2 223444555666666665 57764 67776654
No 32
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.78 E-value=1.3e-17 Score=158.63 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-C-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-D-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~h 108 (253)
|+++|++|++.+++.. | ++++++++|+++...|.+ +.+.| .+|.++++.|+...+..+.+ + | .
T Consensus 44 d~~~l~~n~~~~~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G-~g~~vaS~~E~~~~~~aG~~~~~i--v 109 (448)
T 3btn_A 44 DLGKIVKKHSQWQTVV----------A-QIKPFYTVKCNSTPAVLEILAALG-TGFACSSKNEMALVQELGVSPENI--I 109 (448)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHT-CEEEESSHHHHHHHHHTTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhE--E
Confidence 9999999999998866 3 579999999999988744 56789 49999999999999887543 4 4 4
Q ss_pred eeCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC------CCccCCChhhHHHH
Q 025380 109 FIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------ESKSGVEPSGCLEL 180 (253)
Q Consensus 109 ~IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e------~~R~Gv~p~e~~~l 180 (253)
|-|+. ....++.+++ .++ ..+|||.++++.|++.+ . +++|+|+||||.. |+|+|++++++.++
T Consensus 110 ~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~~~ 180 (448)
T 3btn_A 110 FTSPCKQVSQIKYAAK----VGVNIMTCDNEIELKKIARNH----P-NAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHL 180 (448)
T ss_dssp ECCSSCCHHHHHHHHH----HTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCCCC--------CCCCBCHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH----cCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEEecCCCccCCCCCCcCCCCHHHHHHH
Confidence 55665 4466777663 676 69999999999998753 3 6799999999854 79999999999999
Q ss_pred HHHHHhcCCCeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 181 VKHVSQNCPNLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 181 ~~~i~~~~~~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
++.+. .+ +|++.|||+|++.. .+.....++.+..+++.+++ .|++. ..|++|..
T Consensus 181 ~~~~~-~~-~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~-~G~~~--~~ldiGGG 237 (448)
T 3btn_A 181 LECAK-EL-DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGE-FGFTM--NMLDIGGG 237 (448)
T ss_dssp HHHHH-HH-TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCSC
T ss_pred HHHHH-hC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEeCCC
Confidence 99887 66 99999999999862 22334455555667766665 57764 67876654
No 33
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.78 E-value=3.7e-18 Score=161.30 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC--CceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD--DLEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~--~i~~h 108 (253)
|+++|++|++.+++.+ | ++++++++|+++...|.+ +.+.|+ +|.+++..|+...+..+.+ +| .
T Consensus 44 dl~~l~~n~~~~~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~G~~~~~I--i 109 (424)
T 7odc_A 44 DLGDILKKHLRWLKAL----------P-RVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVPAERV--I 109 (424)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred eHHHHHHHHHHHHHhC----------C-CCeEEEEeccCCcHHHHHHHHHcCC-cEEECCHHHHHHHHHcCCChhhE--E
Confidence 9999999999999876 3 689999999999988755 557898 9999999999998887433 35 5
Q ss_pred eeCCCCc-ccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC------CCCCccCCChhhHHHH
Q 025380 109 FIGNLQS-NKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS------GEESKSGVEPSGCLEL 180 (253)
Q Consensus 109 ~IG~lq~-nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG------~e~~R~Gv~p~e~~~l 180 (253)
|.|+..+ .+++.+++ .++ ..+|||.++++.|++.+ . .++|+|+||++ ..++|+|++++++.++
T Consensus 110 ~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~ 180 (424)
T 7odc_A 110 YANPCKQVSQIKYAAS----NGVQMMTFDSEIELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLKTSRLL 180 (424)
T ss_dssp ECCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEBCC-----------CCCBCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhC----C-CCeEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 6687544 56777774 566 46999999999998864 3 57899999986 3479999999999999
Q ss_pred HHHHHhcCCCeeEeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 181 VKHVSQNCPNLEFCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 181 ~~~i~~~~~~L~l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
++.+. . ++|++.|||+|++.. .+.....++.+.++++.+++ +|++. ..|++|.
T Consensus 181 ~~~~~-~-~~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~-~G~~~--~~ldiGG 236 (424)
T 7odc_A 181 LERAK-E-LNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATE-VGFSM--HLLDIGG 236 (424)
T ss_dssp HHHHH-H-TTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCC
T ss_pred HHHHH-h-CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 99987 6 589999999999763 22345667777788877765 57765 7888876
No 34
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.78 E-value=9e-18 Score=160.75 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCC-C-ceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPD-D-LEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~h 108 (253)
|+++|++|++.+++.+ | ++++++++|+++...|.+ +.+.| .+|.++++.|+...+..+.+ + | .
T Consensus 54 Dl~~l~~n~~~l~~~~----------~-~~~i~yavKAn~~~~v~~~l~~~G-~g~dvaS~~E~~~~~~aG~~~~~i--v 119 (471)
T 2oo0_A 54 DLGDILKKHLRWLKAL----------P-RVTPFYAVKCNDSKAIVKTLAATG-TGFDCASKTEIQLVQSLGVPPERI--I 119 (471)
T ss_dssp EHHHHHHHHHHHHHHC----------T-TEEEEEEGGGCCCHHHHHHHHHHT-CEEEECSHHHHHHHHHTTCCGGGE--E
T ss_pred EHHHHHHHHHHHHHhC----------C-CCeEEEEEeeCCCHHHHHHHHHcC-CcEEEeCHHHHHHHHHcCCChhhE--E
Confidence 9999999999998865 2 579999999999988744 56789 89999999999999887543 3 4 4
Q ss_pred eeCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCC------CCCccCCChhhHHHH
Q 025380 109 FIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSG------EESKSGVEPSGCLEL 180 (253)
Q Consensus 109 ~IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~------e~~R~Gv~p~e~~~l 180 (253)
|.|+. ....++.+++ .++ ..+|||.++++.|++.+ . +++|+|+||||. .|+|+|++++++.++
T Consensus 120 ~~g~~k~~~ei~~a~~----~gv~~~~vds~~el~~l~~~~----~-~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~~~ 190 (471)
T 2oo0_A 120 YANPCKQVSQIKYAAN----NGVQMMTFDSEVELMKVARAH----P-KAKLVLRIATDDSKAVCRLSVKFGATLRTSRLL 190 (471)
T ss_dssp ECCSSCCHHHHHHHHH----TTCCEEEECSHHHHHHHHHHC----T-TCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH----CCCCEEEECCHHHHHHHHHhC----C-CCeEEEEEcCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 55665 4456777763 566 59999999999998753 3 679999999973 379999999999999
Q ss_pred HHHHHhcCCCeeEeEEeeecCCCC-C--CcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcc
Q 025380 181 VKHVSQNCPNLEFCGLMTIGMPDY-T--STPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSG 240 (253)
Q Consensus 181 ~~~i~~~~~~L~l~GLmth~a~~~-~--~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~ 240 (253)
++.+. .+ +|++.|||+|++... + .....++.+..+.+.+++ .|++. ..|.+|..-
T Consensus 191 ~~~~~-~~-~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~-~G~~~--~~ldiGGG~ 248 (471)
T 2oo0_A 191 LERAK-EL-NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAE-VGFSM--YLLDIGGGF 248 (471)
T ss_dssp HHHHH-HT-TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHH-HTCCC--CEEECCCCC
T ss_pred HHHHH-hC-CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCC--CEEEECCCc
Confidence 99997 76 999999999998632 2 223445555666666665 57764 677766553
No 35
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.77 E-value=4.5e-18 Score=157.96 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcCCC-C-ceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPD-RIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQLPD-D-LEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~-~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~~~-~-i~~ 107 (253)
|+++|++|++.+++.+ |. ++++++|+|+++...+ +.+.++|+ +|+|+++.|+...+..+.+ + |
T Consensus 19 dl~~l~~N~~~l~~~~----------~~~~~~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~I-- 85 (386)
T 2yxx_A 19 FEETLRKRSRLVKEVF----------EGVNLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLAAKLAGVPSHTV-- 85 (386)
T ss_dssp EHHHHHHHHHHHHHHT----------TTSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCGGGE--
T ss_pred EHHHHHHHHHHHHHhh----------ccCCceEEEEEeeCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCChhhE--
Confidence 9999999999998876 33 5799999999999887 44668999 9999999999999987543 3 5
Q ss_pred EeeCCC-CcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCC------------CCccCCC
Q 025380 108 HFIGNL-QSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE------------ESKSGVE 173 (253)
Q Consensus 108 h~IG~l-q~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e------------~~R~Gv~ 173 (253)
.+.|+. .+..+..+++ .++ ..+|||.++++.|++.+.+ +++|+|+||+|.. ++|+|++
T Consensus 86 l~~~~~k~~~~l~~a~~----~~v~~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~ 157 (386)
T 2yxx_A 86 VWNGNGKSRDQMEHFLR----EDVRIVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIP 157 (386)
T ss_dssp EECCSCCCHHHHHHHHH----TTCCEEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEE
T ss_pred EEeCCCCCHHHHHHHHH----CCCCEEEeCCHHHHHHHHHhcCc----CCeEEEEECCCCCCCCCcccccCCCCCCCCCC
Confidence 566875 5677888884 788 8999999999999987542 4689999986532 4999999
Q ss_pred hhhHHHHHHHHHhcCCCeeEeEEeeecCC
Q 025380 174 PSGCLELVKHVSQNCPNLEFCGLMTIGMP 202 (253)
Q Consensus 174 p~e~~~l~~~i~~~~~~L~l~GLmth~a~ 202 (253)
+++ .++++ . ++|+|++.|||||++.
T Consensus 158 ~~~-~~~~~--~-~~~~l~~~Gl~~H~gs 182 (386)
T 2yxx_A 158 LED-LDSFM--E-RFRSMNIRGLHVHIGS 182 (386)
T ss_dssp GGG-HHHHH--H-HHTTSCEEEEECCCCS
T ss_pred hhH-HHHHh--h-ccCCCcEEEEEEECCC
Confidence 988 88887 4 6799999999999987
No 36
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.74 E-value=6.9e-18 Score=159.14 Aligned_cols=176 Identities=15% Similarity=0.154 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCcccccccHHHHHHHHhcC-CC----C-
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHRCFGENYVQEIVEKAAQL-PD----D- 104 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~~fGen~vqEa~~~~~~~-~~----~- 104 (253)
|+++|++|++.++ .+ + ++++++|+++...+ +.+.+.|+ +|+++++.|+...+..+ +. +
T Consensus 32 dl~~l~~N~~~l~-~~----------~---~i~~avKAn~~~~v~~~l~~~G~-g~~vas~~E~~~~~~~G~~~~~~~~~ 96 (425)
T 1knw_A 32 DAQIIRRQIAALK-QF----------D---VVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDD 96 (425)
T ss_dssp EHHHHHHHHHTTT-TS----------S---EEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTS
T ss_pred EHHHHHHHHHHHh-hC----------C---cceEeeecCCCHHHHHHHHHcCC-eEEEcCHHHHHHHHHcCCCCCCCcCe
Confidence 9999999999998 65 3 79999999999877 54568896 79999999999998875 43 3
Q ss_pred ceEEeeCC-CCcccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe------------CCCCCCccC
Q 025380 105 LEWHFIGN-LQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN------------TSGEESKSG 171 (253)
Q Consensus 105 i~~h~IG~-lq~nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn------------TG~e~~R~G 171 (253)
| .|.|+ .....+..+++ .++..+|||.++++.|++.+.. .+|+|+|| ||+.|+|+|
T Consensus 97 I--v~~g~~k~~~~l~~a~~----~~i~~~vds~~el~~l~~~a~~-----~~v~lRv~~~~~~~~h~~i~tG~~~~RfG 165 (425)
T 1knw_A 97 I--VFTADVIDQATLERVSE----LQIPVNAGSVDMLDQLGQVSPG-----HRVWLRVNPGFGHGHSQKTNTGGENSKHG 165 (425)
T ss_dssp E--EEEESCCCHHHHHHHHH----HTCCEEESSHHHHHHHHHHSTT-----CEEEEEEECSCCSSCTTSCCSSSTTCCCS
T ss_pred E--EEECCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHhhhh-----ccEEEEECCCCCCCCCcccccCCCCCCCc
Confidence 4 45575 45577787774 6778999999999999987642 35777765 666689999
Q ss_pred CChhhHHHHHHHHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCc
Q 025380 172 VEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMS 239 (253)
Q Consensus 172 v~p~e~~~l~~~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS 239 (253)
++++++.++++.+. .+ +|++.|||+|++...+ ....-..+..+.+.+.+ +|++. ..+++|..
T Consensus 166 ~~~~~~~~~~~~~~-~~-~l~l~Gl~~H~gs~~~-~~~~~~~~~~~~~~~~~-~G~~~--~~ln~GGG 227 (425)
T 1knw_A 166 IWYTDLPAALDVIQ-RH-HLQLVGIHMHIGSGVD-YAHLEQVCGAMVRQVIE-FGQDL--QAISAGGG 227 (425)
T ss_dssp EEGGGHHHHHHHHH-HT-TCEEEEEECCCCCTTC-HHHHHHHHHHHHHHHHH-HTCCC--SEEECCCC
T ss_pred CCHHHHHHHHHHHH-HC-CCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHHH-hCCCC--cEEEeCCC
Confidence 99999999999998 88 9999999999986332 22222333444444443 47654 67887543
No 37
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.73 E-value=3.1e-16 Score=154.60 Aligned_cols=201 Identities=10% Similarity=0.064 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCC---cccccccHHHHHHHHhcCCCCceE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH---RCFGENYVQEIVEKAAQLPDDLEW 107 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~---~~fGen~vqEa~~~~~~~~~~i~~ 107 (253)
|++.|++|++.+++....+....+. +.++++++++|+++...| +.+.+.|+ .+|.+++..|+...+..+.++...
T Consensus 51 D~d~L~~ni~~l~~af~~a~~~~~y-~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~I 129 (619)
T 3nzp_A 51 FPHLIQKQIENIYGNFNKARKEFGY-KGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPI 129 (619)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTC-CSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEE
T ss_pred cHHHHHHHHHHHHHHHHHHhhhccc-CCCEEEEEEEeccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCEE
Confidence 9999999999999998776666554 346899999999999777 55668897 479999999999877765443222
Q ss_pred EeeCCCCcccHHHHhhC-CCCccEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEEEe-----------CCCCCCccCCCh
Q 025380 108 HFIGNLQSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVN-----------TSGEESKSGVEP 174 (253)
Q Consensus 108 h~IG~lq~nk~~~~~~~-~~~~~li~sVds~~~a~~L~~~a~~~~-~~~~~V~lqVn-----------TG~e~~R~Gv~p 174 (253)
.+-|.-..+.++.++.+ ....++..+|||+++++.|.+.+.+.+ + +++|+|+|| ||++++|+|+++
T Consensus 130 v~nG~K~~e~I~~Al~a~~~g~~v~ivVDS~~ELe~l~~~a~~~g~~-~~~V~LRInp~~~g~~~~~~TGg~~sKFGi~~ 208 (619)
T 3nzp_A 130 TVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKP-KPNIGLRVRLHSAGVGIWAKSGGINSKFGLTS 208 (619)
T ss_dssp EECSCCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSC-CCEEEEEBCCTTC-------------CCSBCH
T ss_pred EeCCCCCHHHHHHHHhhhhcCCcEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEEEecCCCCCcccccCCCCCccCcCCH
Confidence 34454222334443300 012567899999999999999999888 7 899999998 465679999999
Q ss_pred hhHHHHHHHHHhcCCCe-eEeEEeeecCC---CCCCcHHHHHHHHHHHHHHHHHhCC-CCCCCeeeccC
Q 025380 175 SGCLELVKHVSQNCPNL-EFCGLMTIGMP---DYTSTPENFKTLAKCRSEVCKALGI-PEEQCDLSMGM 238 (253)
Q Consensus 175 ~e~~~l~~~i~~~~~~L-~l~GLmth~a~---~~~~~~~~F~~l~~~~~~l~~~~~~-~~~~~~LSmGM 238 (253)
+++.++++.+. +++.| ++.|||+|.+. +.+..+..++.+.++++.+++ .|+ +. ..|.+|.
T Consensus 209 ee~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~-~G~~~l--~~LDiGG 273 (619)
T 3nzp_A 209 TELIEAVNLLK-ENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRK-MGAKNL--KAINLGG 273 (619)
T ss_dssp HHHHHHHHHHH-HTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHH-TTCTTC--CEEEEES
T ss_pred HHHHHHHHHHH-hCCCCCceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH-hcCCCC--CEEEeCC
Confidence 99999999998 89999 59999998765 333456888999999999986 577 54 7887775
No 38
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.71 E-value=2.9e-16 Score=155.83 Aligned_cols=201 Identities=15% Similarity=0.119 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCCc-ccccccHHHHHHHHhcC-CCCceEE
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGHR-CFGENYVQEIVEKAAQL-PDDLEWH 108 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~~-~fGen~vqEa~~~~~~~-~~~i~~h 108 (253)
|++.|++|++.+++....+....+. +.++++++++|+++...| +.+.+.|+. +|.+++..|+...+..+ +.+-...
T Consensus 92 D~d~Lr~ni~~l~~af~~a~~~~~Y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~iIv 170 (666)
T 3nzq_A 92 FPQILQHRLRSINAAFKRARESYGY-NGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIV 170 (666)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHhHHhhcc-cCCeEEEEEEeeCChHHHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcEEE
Confidence 9999999999999988765555444 346789999999999887 445678986 89999999999876664 4421223
Q ss_pred eeCCCCcccHHHHhhC-CCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe-----------CCCCCCccCCChhh
Q 025380 109 FIGNLQSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSGVEPSG 176 (253)
Q Consensus 109 ~IG~lq~nk~~~~~~~-~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn-----------TG~e~~R~Gv~p~e 176 (253)
+-|.-....++.+++. -...++.++|||+++++.|++.+.+.++ +++|+|+|| ||++.+|+|+++++
T Consensus 171 ~nG~K~~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~-~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~e 249 (666)
T 3nzq_A 171 CNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNV-VPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQ 249 (666)
T ss_dssp ECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTC-CCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHH
T ss_pred EcCCCCHHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCC-CceEEEEEEecCCCCcCccccCCCCCcCcCCHHH
Confidence 4464233445555520 0014578999999999999999999997 899999995 56667999999999
Q ss_pred HHHHHHHHHhcCCCee-EeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 177 CLELVKHVSQNCPNLE-FCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 177 ~~~l~~~i~~~~~~L~-l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
+.++++.+. ++++|. +.|||+|.+.. .+.....++.+.++++++++ .|++. ..|++|.
T Consensus 250 ~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~L~~-~G~~l--~~LDiGG 311 (666)
T 3nzq_A 250 VLQLVETLR-EAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHK-LGVNI--QCFDVGG 311 (666)
T ss_dssp HHHHHHHHH-HTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHT-TTCCC--CEEECCS
T ss_pred HHHHHHHHH-hCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--CEEEeCC
Confidence 999999998 899997 99999988653 23456778888888888874 57764 8899876
No 39
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.69 E-value=1.8e-15 Score=149.79 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHH-HHHHHcCC------cccccccHHHHHHHHhcC-CC
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVI-RQVYEAGH------RCFGENYVQEIVEKAAQL-PD 103 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i-~~~~~~G~------~~fGen~vqEa~~~~~~~-~~ 103 (253)
|++.|++|++.+++....+....+. +.++++++++|+++...| +.+.+.|+ .+|.+++..|+...+..+ +.
T Consensus 70 D~d~L~~ni~~l~~af~~a~~~~~y-~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~ 148 (648)
T 3n2o_A 70 FPQILHQRVHSICDAFNQAIEEYQY-PNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHA 148 (648)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTC-SSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSS
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcc-cCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCC
Confidence 9999999999999988765544444 346889999999999877 55667884 789999999999876654 44
Q ss_pred CceEEeeCCCCcccHHHHhhC-CCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEe-----------CCCCCCccC
Q 025380 104 DLEWHFIGNLQSNKVKPLLAG-VPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN-----------TSGEESKSG 171 (253)
Q Consensus 104 ~i~~h~IG~lq~nk~~~~~~~-~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVn-----------TG~e~~R~G 171 (253)
+-...+-|.-....++.++.. -...++..+|||+++++.|.+.+.+.++ +++|+|+|| ||++.+|+|
T Consensus 149 e~iIv~nG~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~-~~~V~LRInp~~~~~~~~i~TGg~~SKFG 227 (648)
T 3n2o_A 149 SSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGV-TPRLGIRIRLASQGAGKWQASGGEKSKFG 227 (648)
T ss_dssp CCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTC-CCEEEEEBCCSTTSTTTTCSSSSCCCCCC
T ss_pred CcEEEecCCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEEECCCCCCCCccccCCCCCcCc
Confidence 212244464233345555410 0113568999999999999999999897 999999997 566779999
Q ss_pred CChhhHHHHHHHHHhcCCCee-EeEEeeecCCC---CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 172 VEPSGCLELVKHVSQNCPNLE-FCGLMTIGMPD---YTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 172 v~p~e~~~l~~~i~~~~~~L~-l~GLmth~a~~---~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
++++++.++++.+. ++++|. +.||++|.+.. .+..+..++.+.++++++++ .|++. ..|++|.
T Consensus 228 i~~~e~~~ll~~l~-~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~-~G~~l--~~LDiGG 294 (648)
T 3n2o_A 228 LSASQVLNVISRLK-KENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRT-LGANI--TYFDVGG 294 (648)
T ss_dssp BCHHHHHHHHHHHH-HTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHH-TTCCC--CEEECCS
T ss_pred CCHHHHHHHHHHHH-hCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCC--cEEEeCC
Confidence 99999999999998 899997 99999987652 23456788888899999885 57764 8899875
No 40
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=99.51 E-value=4.2e-14 Score=130.92 Aligned_cols=180 Identities=10% Similarity=-0.006 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHHH-HHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQV-YEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~~-~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|++.|++|++.+++.... .++++++++|+++...|.++ .+.|+ +|.++...|+...+++++.+| +|.
T Consensus 10 d~~~l~~n~~~l~~~~~~---------~~~~i~yavKAn~~~~v~~~l~~~G~-g~dvaS~~E~~~~~~~~~~~i--i~~ 77 (365)
T 3mt1_A 10 DKAKLTRNMERIAHVREK---------SGAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGKET--HAY 77 (365)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHTTTSC-EEEESSHHHHHHHHHHTCSEE--EEE
T ss_pred eHHHHHHHHHHHHHHHhh---------cCCEEEEEehhcCCHHHHHHHHHhCC-eEEECCHHHHHHHHhhCCCce--EEE
Confidence 899999999999987731 25789999999999877554 46787 799999999998776654334 667
Q ss_pred CCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCC-----C--cceEEEEEeCCCCCCccCCChhhHHHHHH
Q 025380 111 GNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-----K--PLKVLVQVNTSGEESKSGVEPSGCLELVK 182 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~-----~--~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~ 182 (253)
|+..+ .+++.+++ .+...+|||.++++.|++.+.+.+. + ....|.+++||+..+|+|++++++.+.
T Consensus 78 ~~~k~~~el~~a~~----~g~~i~vds~~el~~l~~~a~~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~~~-- 151 (365)
T 3mt1_A 78 SVAYGDNEIDEVVS----HADKIIFNSISQLERFADKAAGIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER-- 151 (365)
T ss_dssp ESCCCTTTHHHHHH----HCSEEEESSHHHHHHHGGGGTTSEEEEEECCC----------------CCSBCCHHHHHT--
T ss_pred CCCCCHHHHHHHHH----cCCEEEECCHHHHHHHHHHhccCCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHhhh--
Confidence 87654 56887774 5567899999999999988753211 0 112344556775569999999877542
Q ss_pred HHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 183 HVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 183 ~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
.++ ++.||++|.+...... +.|..+.+...++-...+.+. ..|.+|.
T Consensus 152 ----~l~--~~~Glh~HigSq~~~~-~~~~~~~~~~~~~~~~~g~~~--~~ldiGG 198 (365)
T 3mt1_A 152 ----VMD--RINGFMIHNNCENKDF-GLFDRMLGEIEERFGALIARV--DWVSLGG 198 (365)
T ss_dssp ----TGG--GCSEEEECCC--CCSH-HHHHHHHHHHHHHHHHHHTTS--SEEECCS
T ss_pred ----ccC--CeEEEEEeCCCCCCCH-HHHHHHHHHHHHHHHHhCCCC--CEEEeCC
Confidence 223 7999999987633222 233333333222222234443 6677764
No 41
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=99.42 E-value=6.1e-13 Score=125.57 Aligned_cols=174 Identities=10% Similarity=0.011 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEeccCCHHHHHH-HHHcCCcccccccHHHHHHHHhcCCCCceEEee
Q 025380 32 TDGVAATALRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQ-VYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFI 110 (253)
Q Consensus 32 ~l~~l~~Nl~~i~~~i~~~~~~~~r~p~~v~L~aVvK~h~~~~i~~-~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~I 110 (253)
|++.|++|++.+++.... .++++++++|+++...|.+ +.+.|+ +|.+++..|+...+..++.+| +|.
T Consensus 50 d~~~l~~n~~~l~~~~~~---------~~~~i~yAvKAN~~~~vl~~l~~~G~-G~dvaS~~El~~a~~~~~~~I--i~~ 117 (418)
T 3n29_A 50 EEDKLRKNCELLASVGEK---------SGAKVLLALKGFAFSGAMKIVGEYLK-GCTCSGLWEAKFAKEYMDKEI--HTY 117 (418)
T ss_dssp EHHHHHHHHHHHHHHHHH---------HCCEEEEETTTCCCGGGHHHHHHHSC-EEEESSHHHHHHHHHHTCSEE--EEE
T ss_pred eHHHHHHHHHHHHHhhhh---------cCCEEEEEEccCCCHHHHHHHHHcCC-eEEECCHHHHHHHHhhCCCCE--EEE
Confidence 999999999999987731 2578999999999977744 556775 699999999998777654334 677
Q ss_pred CCCCc-ccHHHHhhCCCCccEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeC------------CCCCCccCCChhhH
Q 025380 111 GNLQS-NKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNT------------SGEESKSGVEPSGC 177 (253)
Q Consensus 111 G~lq~-nk~~~~~~~~~~~~li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnT------------G~e~~R~Gv~p~e~ 177 (253)
|+..+ .+++.+++ .++..+|||.++++.|++.+. +++|+|+||+ |+..+|+|++++++
T Consensus 118 ~~~k~~~el~~A~~----~g~~i~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~~~ 188 (418)
T 3n29_A 118 SPAFKEDEIGEIAS----LSHHIVFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDF 188 (418)
T ss_dssp ESSCCHHHHHHHHH----HCSEEEESSHHHHHHHGGGCT-----TSEEEEEBCCCCC----------CTTCCSSBCGGGG
T ss_pred CCCCCHHHHHHHHH----cCCeEEECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHHHH
Confidence 87654 45777774 566779999999999987653 5689999874 54559999999876
Q ss_pred HHHHHHHHhcCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccC
Q 025380 178 LELVKHVSQNCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGM 238 (253)
Q Consensus 178 ~~l~~~i~~~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGM 238 (253)
.+ . .++ ++.||++|.+.. .. -+.|..+.+...++-...|.+. ..|.+|.
T Consensus 189 ~~-----~-~l~--~l~Glh~HigSq-~~-~~~~~~~~~~~~~~~~~~g~~l--~~ldiGG 237 (418)
T 3n29_A 189 EN-----V-DLN--AIEGLHFHALCE-ES-ADALEAVLKVFEEKFGKWIGQM--KWVNFGG 237 (418)
T ss_dssp TT-----C-CCT--TCCEEECCCCSS-BC-HHHHHHHHHHHHHHHGGGTTTC--SEEECCS
T ss_pred HH-----h-hcC--ceEEEEEecCCC-CC-HHHHHHHHHHHHHHHHHhCCCC--CEEEeCC
Confidence 44 1 233 789999998764 22 2334333333222222244443 6777775
No 42
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=66.08 E-value=17 Score=33.30 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=93.3
Q ss_pred cEEEEEec--cCCHHH----HHHHHHcCCcc--cccccHHHHHHHHh---cCCCCceEEeeCCCCcccHHHHhh-CCCCc
Q 025380 61 IRIVAVSK--TKPVSV----IRQVYEAGHRC--FGENYVQEIVEKAA---QLPDDLEWHFIGNLQSNKVKPLLA-GVPNL 128 (253)
Q Consensus 61 v~L~aVvK--~h~~~~----i~~~~~~G~~~--fGen~vqEa~~~~~---~~~~~i~~h~IG~lq~nk~~~~~~-~~~~~ 128 (253)
+.+-..+. |...+. |.++.++|++. +++...++|..+.. ..+-||.--+ |+....+..+++ .+..+
T Consensus 32 i~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~~~vPlvaDi--Hf~~~lal~a~e~G~dkl 109 (366)
T 3noy_A 32 IVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKKSPMPVIADI--HFAPSYAFLSMEKGVHGI 109 (366)
T ss_dssp CEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHCSSCEEEEC--CSCHHHHHHHHHTTCSEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhcCCCCEEEeC--CCCHHHHHHHHHhCCCeE
Confidence 44555554 455533 34455789987 88888777665433 2333532111 244445555554 12211
Q ss_pred cEEE-EeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCC----CccC-CChhh----HHHHHHHHHhcCCCeeEeEEee
Q 025380 129 AMVE-SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEE----SKSG-VEPSG----CLELVKHVSQNCPNLEFCGLMT 198 (253)
Q Consensus 129 ~li~-sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~----~R~G-v~p~e----~~~l~~~i~~~~~~L~l~GLmt 198 (253)
.+-+ .+.+.+..+.+-+.|++.+. ++-|=||.|.-. .|.| -.|+. +...++.+. .+..=++ +.+
T Consensus 110 RINPGNig~~~~~~~vv~~ak~~~~---piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e-~~gf~~i--viS 183 (366)
T 3noy_A 110 RINPGNIGKEEIVREIVEEAKRRGV---AVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFE-KWGFTNY--KVS 183 (366)
T ss_dssp EECHHHHSCHHHHHHHHHHHHHHTC---EEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHH-HTTCCCE--EEE
T ss_pred EECCcccCchhHHHHHHHHHHHcCC---CEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHH-hCCCCeE--EEe
Confidence 1111 23456777888888988876 677889988532 3466 45643 233334443 3322112 134
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 199 IGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 199 h~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
+-+.+.......++.|.+ .. .|++.....+-.+|.++-..-|+.-|++|
T Consensus 184 ~K~S~v~~~i~ayr~la~---~~--dyPLHlGvTEAG~~~~G~ikSsigiG~LL 232 (366)
T 3noy_A 184 IKGSDVLQNVRANLIFAE---RT--DVPLHIGITEAGMGTKGIIKSSVGIGILL 232 (366)
T ss_dssp EECSSHHHHHHHHHHHHH---HC--CCCEEECCSSCCSHHHHHHHHHHHHHHHH
T ss_pred eecCChHHHHHHHHHHHh---cc--CCCEEEccCCCCCCcceeeehHHHHHHHH
Confidence 444322222233433332 21 24444334566777777788888887765
No 43
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=42.81 E-value=1.3e+02 Score=25.56 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEeeecCC-C-CCCcHHHHHHHHH
Q 025380 139 IAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-D-YTSTPENFKTLAK 216 (253)
Q Consensus 139 ~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a~-~-~~~~~~~F~~l~~ 216 (253)
.+.+.-+..++.|. ++-|-+|.+. +.+.+ +.+. +.+.+.-+||..|- + ..-....+.++++
T Consensus 122 ~~~~~i~~ir~~G~---k~Gvalnp~T-------p~e~l----~~~l---~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~ 184 (246)
T 3inp_A 122 HIDRSLQLIKSFGI---QAGLALNPAT-------GIDCL----KYVE---SNIDRVLIMSVNPGFGGQKFIPAMLDKAKE 184 (246)
T ss_dssp CHHHHHHHHHTTTS---EEEEEECTTC-------CSGGG----TTTG---GGCSEEEEECSCTTC--CCCCTTHHHHHHH
T ss_pred hHHHHHHHHHHcCC---eEEEEecCCC-------CHHHH----HHHH---hcCCEEEEeeecCCCCCcccchHHHHHHHH
Confidence 44445555566665 4455566541 22222 2222 23556668996543 2 2233466788888
Q ss_pred HHHHHHHHhCCCCCCCeeeccCcch-HHHHHHcCCCC
Q 025380 217 CRSEVCKALGIPEEQCDLSMGMSGD-FELAVRNTLLL 252 (253)
Q Consensus 217 ~~~~l~~~~~~~~~~~~LSmGMS~D-~~~Ai~~Gs~~ 252 (253)
+++.+.+ .|++. .-+...|.+.+ ...+++.||..
T Consensus 185 lr~~~~~-~~~~~-~I~VDGGI~~~ti~~~~~aGAD~ 219 (246)
T 3inp_A 185 ISKWISS-TDRDI-LLEIDGGVNPYNIAEIAVCGVNA 219 (246)
T ss_dssp HHHHHHH-HTSCC-EEEEESSCCTTTHHHHHTTTCCE
T ss_pred HHHHHHh-cCCCe-eEEEECCcCHHHHHHHHHcCCCE
Confidence 8877765 35432 13677888765 67778888763
No 44
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=41.56 E-value=61 Score=27.31 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHcCCccc------------------------ccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhC
Q 025380 70 KPVSVIRQVYEAGHRCF------------------------GENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAG 124 (253)
Q Consensus 70 h~~~~i~~~~~~G~~~f------------------------Gen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~ 124 (253)
-|...+..+..+|+..+ |.++++.+.+....+.+.+.+..+ ..+....+..++
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-- 116 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV-- 116 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--
Confidence 55555566777787554 446666666555444333444433 344444556666
Q ss_pred CCCccEEE-EeCCHHHHHHHHHHHHhcCC
Q 025380 125 VPNLAMVE-SVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 125 ~~~~~li~-sVds~~~a~~L~~~a~~~~~ 152 (253)
+.++++. +.|+.+.-..|++.+.+.++
T Consensus 117 -~~~DvVi~~~d~~~~r~~l~~~~~~~~~ 144 (251)
T 1zud_1 117 -ARADVVLDCTDNMATRQEINAACVALNT 144 (251)
T ss_dssp -HHCSEEEECCSSHHHHHHHHHHHHHTTC
T ss_pred -hcCCEEEECCCCHHHHHHHHHHHHHhCC
Confidence 3478755 78999998999999998775
No 45
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=40.06 E-value=1e+02 Score=27.38 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=40.6
Q ss_pred cCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCC-eeEeEEeeecCCCCCCcHHHHHHHHHHHHHHH
Q 025380 150 MGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPN-LEFCGLMTIGMPDYTSTPENFKTLAKCRSEVC 222 (253)
Q Consensus 150 ~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~-L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~ 222 (253)
.|. .++|+|..|+| .+++..++-.+. .|. +++.|+-|.+++.. ..+..+....+.+.+.
T Consensus 10 ~~~-~~~vilD~DpG---------iDDa~AL~~al~--~p~~iel~gITtv~GN~~--~~~~~~Nal~lL~~~g 69 (338)
T 3epw_A 10 HGS-AKNVVLDHDGN---------LDDFVAMVLLAS--NTEKVRLIGALCTDADCF--VENGFNVTGKIMCLMH 69 (338)
T ss_dssp ----CEEEEEEECCS---------HHHHHHHHHHHH--CTTTEEEEEEEECSSSSC--HHHHHHHHHHHHHHHH
T ss_pred cCc-cceEEEECCCC---------hHHHHHHHHHHh--CCCCeEEEEEEEeCCCCh--HHHHHHHHHHHHHHhC
Confidence 455 78999999998 478888877764 699 99999999877632 2344555555555553
No 46
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=38.35 E-value=1.7e+02 Score=24.18 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCcc--cccc----------cHHHHHHHHhcCCCCceEEeeCCCCcc-cHHHHhhCCCCccEE-EEeC--C
Q 025380 73 SVIRQVYEAGHRC--FGEN----------YVQEIVEKAAQLPDDLEWHFIGNLQSN-KVKPLLAGVPNLAMV-ESVD--N 136 (253)
Q Consensus 73 ~~i~~~~~~G~~~--fGen----------~vqEa~~~~~~~~~~i~~h~IG~lq~n-k~~~~~~~~~~~~li-~sVd--s 136 (253)
+.+..+.+.|+++ +++. ..+.+..++.....++.-|++.. .+. .+..+++ .. ++.+ .-.. .
T Consensus 21 ~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~-aG-adgv~vh~e~~~ 97 (230)
T 1tqj_A 21 EEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAK-AG-ADIISVHVEHNA 97 (230)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHH-HT-CSEEEEECSTTT
T ss_pred HHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHH-cC-CCEEEECccccc
Confidence 3445555666665 3332 01344445544333455567653 333 3444443 11 3443 2222 2
Q ss_pred HHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcCCCeeEeEEeeecCC-CCC-CcHHHHHHH
Q 025380 137 EKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYT-STPENFKTL 214 (253)
Q Consensus 137 ~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~~~L~l~GLmth~a~-~~~-~~~~~F~~l 214 (253)
.+....+-+.+.+.|. . +-+-+|.+ +|.+. ++.+. +++.+.++||.+|- +.. .....+.++
T Consensus 98 ~~~~~~~~~~i~~~g~-~--~gv~~~p~--------t~~e~---~~~~~---~~~D~v~~msv~pg~ggq~~~~~~~~~i 160 (230)
T 1tqj_A 98 SPHLHRTLCQIRELGK-K--AGAVLNPS--------TPLDF---LEYVL---PVCDLILIMSVNPGFGGQSFIPEVLPKI 160 (230)
T ss_dssp CTTHHHHHHHHHHTTC-E--EEEEECTT--------CCGGG---GTTTG---GGCSEEEEESSCC----CCCCGGGHHHH
T ss_pred chhHHHHHHHHHHcCC-c--EEEEEeCC--------CcHHH---HHHHH---hcCCEEEEEEeccccCCccCcHHHHHHH
Confidence 2345555556666665 4 44444433 12222 22222 35678889997765 222 223456666
Q ss_pred HHHHHHHHHHhCCCCCCCeeeccCcc-hHHHHHHcCCC
Q 025380 215 AKCRSEVCKALGIPEEQCDLSMGMSG-DFELAVRNTLL 251 (253)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~LSmGMS~-D~~~Ai~~Gs~ 251 (253)
+++++...+ .+++. .-..-.|.|. +....++.|+.
T Consensus 161 ~~lr~~~~~-~~~~~-~I~v~GGI~~~~~~~~~~aGad 196 (230)
T 1tqj_A 161 RALRQMCDE-RGLDP-WIEVDGGLKPNNTWQVLEAGAN 196 (230)
T ss_dssp HHHHHHHHH-HTCCC-EEEEESSCCTTTTHHHHHHTCC
T ss_pred HHHHHHHHh-cCCCC-cEEEECCcCHHHHHHHHHcCCC
Confidence 777666543 23332 1345566554 44555566664
No 47
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=32.45 E-value=1.9e+02 Score=25.52 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHcCCc------------------------ccccccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhh
Q 025380 69 TKPVSVIRQVYEAGHR------------------------CFGENYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLA 123 (253)
Q Consensus 69 ~h~~~~i~~~~~~G~~------------------------~fGen~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~ 123 (253)
+-|.+.+..+..+|+. .+|.++++.+......+.+.+.+..+ +.+.. ....++
T Consensus 46 GlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~- 123 (346)
T 1y8q_A 46 GLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEK-KPESFF- 123 (346)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGG-CCHHHH-
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecccCc-chHHHh-
Confidence 3555666667777762 34677887777766666544544443 44433 334555
Q ss_pred CCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 124 GVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 124 ~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
..+++ +.+.|+.+....|++.|.+.+.
T Consensus 124 --~~~dvVv~~~d~~~~r~~ln~~~~~~~i 151 (346)
T 1y8q_A 124 --TQFDAVCLTCCSRDVIVKVDQICHKNSI 151 (346)
T ss_dssp --TTCSEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred --cCCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 45786 6689999999999999998775
No 48
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=29.36 E-value=2.6e+02 Score=23.72 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=63.0
Q ss_pred cEEEEEecc----C-------CHHHHHHHHHcCCccccc--------ccHHHHHHHHhcCCCC-ceEEeeCCCCcccHHH
Q 025380 61 IRIVAVSKT----K-------PVSVIRQVYEAGHRCFGE--------NYVQEIVEKAAQLPDD-LEWHFIGNLQSNKVKP 120 (253)
Q Consensus 61 v~L~aVvK~----h-------~~~~i~~~~~~G~~~fGe--------n~vqEa~~~~~~~~~~-i~~h~IG~lq~nk~~~ 120 (253)
+.+++=+|. . ....+..+++.|+.++-+ ..++.....+....-| |+=+|| +.+-.+.+
T Consensus 41 ~~vIaE~K~aSPSkG~i~~~~~~~~iA~~y~~~A~~IsVlTd~~~F~gs~~dL~~ir~~v~lPvLrKDfi--~~~~qi~e 118 (251)
T 1i4n_A 41 VKIIAEFKKASPSAGDINADASLEDFIRMYDELADAISILTEKHYFKGDPAFVRAARNLTCRPILAKDFY--IDTVQVKL 118 (251)
T ss_dssp CEEEEEECSBCSSSCBSCTTCCHHHHHHHHHHHCSEEEEECCCSSSCCCTHHHHHHHTTCCSCEEEECCC--CSTHHHHH
T ss_pred ceEEEeecCCCCCCCccCCCCCHHHHHHHHHHhCCceEEEecccccCCCHHHHHHHHHhCCCCEEEeeCC--CCHHHHHH
Confidence 578898884 2 335566677655777776 6777777777776556 555676 33334544
Q ss_pred HhhCCCCccE---EEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC
Q 025380 121 LLAGVPNLAM---VESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS 164 (253)
Q Consensus 121 ~~~~~~~~~l---i~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG 164 (253)
+.. . .++. ++++=+.+++..|-+.+.+.|. .++++|++-
T Consensus 119 a~~-~-GAD~ilLi~a~l~~~~l~~l~~~a~~lGl---~~lvEv~~~ 160 (251)
T 1i4n_A 119 ASS-V-GADAILIIARILTAEQIKEIYEAAEELGM---DSLVEVHSR 160 (251)
T ss_dssp HHH-T-TCSEEEEEGGGSCHHHHHHHHHHHHTTTC---EEEEEECSH
T ss_pred HHH-c-CCCEEEEecccCCHHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 332 1 2454 4454455788889889887764 899999874
No 49
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=28.35 E-value=2.4e+02 Score=22.93 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCcccccc------------cHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhhCCCCccEE--EEeCCHH
Q 025380 73 SVIRQVYEAGHRCFGEN------------YVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMV--ESVDNEK 138 (253)
Q Consensus 73 ~~i~~~~~~G~~~fGen------------~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~~~~~~~li--~sVds~~ 138 (253)
+.+..+.++|+++++.- .++.+..++.....++.-|++..=..+.+..+++ . ..+.+ |.-.+..
T Consensus 23 ~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~-a-gad~v~vH~~~~~~ 100 (228)
T 1h1y_A 23 AEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAK-A-GASGFTFHIEVSRD 100 (228)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHH-H-TCSEEEEEGGGCTT
T ss_pred HHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHH-c-CCCEEEECCCCccc
Confidence 44566667777763222 1455556665543244446654322223454543 1 24554 4433333
Q ss_pred HHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHHhcC-CCeeEeEEeeecCC-CCCC-cHHHHHHHH
Q 025380 139 IAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNC-PNLEFCGLMTIGMP-DYTS-TPENFKTLA 215 (253)
Q Consensus 139 ~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~~~~-~~L~l~GLmth~a~-~~~~-~~~~F~~l~ 215 (253)
.+..+-+.+.+.|. .+.+-++.+ +|.+. ++.+. .. .+..+.++||.+|- +... ....+..++
T Consensus 101 ~~~~~~~~i~~~g~---~igv~~~p~--------t~~e~---~~~~~-~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~ 165 (228)
T 1h1y_A 101 NWQELIQSIKAKGM---RPGVSLRPG--------TPVEE---VFPLV-EAENPVELVLVMTVEPGFGGQKFMPEMMEKVR 165 (228)
T ss_dssp THHHHHHHHHHTTC---EEEEEECTT--------SCGGG---GHHHH-HSSSCCSEEEEESSCTTCSSCCCCGGGHHHHH
T ss_pred HHHHHHHHHHHcCC---CEEEEEeCC--------CCHHH---HHHHH-hcCCCCCEEEEEeecCCCCcccCCHHHHHHHH
Confidence 31333444444554 455666543 12221 22232 20 14667888997653 2221 123344445
Q ss_pred HHHHHHHHHhCCCCCCCeeeccCcch-HHHHHHcCCC
Q 025380 216 KCRSEVCKALGIPEEQCDLSMGMSGD-FELAVRNTLL 251 (253)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~LSmGMS~D-~~~Ai~~Gs~ 251 (253)
++++... +++ -.+..|.+.+ ...+++.|+.
T Consensus 166 ~~~~~~~---~~p---i~v~GGI~~~ni~~~~~aGaD 196 (228)
T 1h1y_A 166 ALRKKYP---SLD---IEVDGGLGPSTIDVAASAGAN 196 (228)
T ss_dssp HHHHHCT---TSE---EEEESSCSTTTHHHHHHHTCC
T ss_pred HHHHhcC---CCC---EEEECCcCHHHHHHHHHcCCC
Confidence 4443221 222 4678888754 4466777764
No 50
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=28.11 E-value=52 Score=29.94 Aligned_cols=49 Identities=6% Similarity=-0.057 Sum_probs=38.2
Q ss_pred EeCCHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCCccCCChhhHHHHHHHHH
Q 025380 133 SVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 133 sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~R~Gv~p~e~~~l~~~i~ 185 (253)
-+-+.+++..|.+.|.+.+. -.|++.|.+...=.|++.+++.++++.+.
T Consensus 71 G~lt~~qLr~LadiA~kyg~----G~irlTtrqnI~l~gi~~e~l~~l~~~L~ 119 (386)
T 3or1_B 71 RLMSTSHIREACEIAKKFCN----GHLRFTTRNNIEFMVDNEETLKALVADLK 119 (386)
T ss_dssp SEEEHHHHHHHHHHHHHHST----TEEEECTTSCEEEEESSHHHHHHHHHHHT
T ss_pred ceeCHHHHHHHHHHHHHhCC----CeEEECCCCeEEEecCCHHHHHHHHHHHH
Confidence 45567899999999998764 35677776555567889999999998886
No 51
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=26.31 E-value=2.4e+02 Score=26.30 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=64.6
Q ss_pred CcEEEEEecc-----------CCHHHHHHHHHcCCccccc--------ccHHHHHHHHhcCCCC-ceEEeeCCCCcccHH
Q 025380 60 RIRIVAVSKT-----------KPVSVIRQVYEAGHRCFGE--------NYVQEIVEKAAQLPDD-LEWHFIGNLQSNKVK 119 (253)
Q Consensus 60 ~v~L~aVvK~-----------h~~~~i~~~~~~G~~~fGe--------n~vqEa~~~~~~~~~~-i~~h~IG~lq~nk~~ 119 (253)
++.++|=+|- +....+..+++.|+..+-+ ..++.....+....-| ++=+|| +.+-.+.
T Consensus 47 ~~~vIaEvKraSPSkG~i~~~~~~~~iA~~y~~~A~~IsvLTd~~~F~gs~~dL~~vr~~v~lPvLrKDFI--~d~~Qi~ 124 (452)
T 1pii_A 47 RTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFI--IDPYQIY 124 (452)
T ss_dssp SCEEEEEECSEETTTEESCSSCCHHHHHHHHTTTCSEEEEECCSTTTCCCTTHHHHHHHHCCSCEEEESCC--CSHHHHH
T ss_pred CCceEEEecCCCCCCCccCCCCCHHHHHHHHHhhCcEEEEEecccccCCCHHHHHHHHHhcCCCeEEEecc--CCHHHHH
Confidence 3578998883 3446677788777887777 7777777777766556 444566 3333444
Q ss_pred HHhhCCCCcc---EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEEeCC
Q 025380 120 PLLAGVPNLA---MVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTS 164 (253)
Q Consensus 120 ~~~~~~~~~~---li~sVds~~~a~~L~~~a~~~~~~~~~V~lqVnTG 164 (253)
++.. . .++ ++.++=+.+++..|-+.+.+.|- .++++|++-
T Consensus 125 ea~~-~-GAD~ILLi~a~l~~~~l~~l~~~a~~lgm---~~LvEvh~~ 167 (452)
T 1pii_A 125 LARY-Y-QADACLLMLSVLDDDQYRQLAAVAHSLEM---GVLTEVSNE 167 (452)
T ss_dssp HHHH-T-TCSEEEEETTTCCHHHHHHHHHHHHHTTC---EEEEEECSH
T ss_pred HHHH-c-CCCEEEEEcccCCHHHHHHHHHHHHHcCC---eEEEEeCCH
Confidence 4332 1 134 35566666788888888888764 899999843
No 52
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=25.64 E-value=2.3e+02 Score=23.85 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred EEEEEeccCCHHHHHHHHHcCCcccccccH------H-------HHH-HHHhcCCCCceEEeeCCCCcccHHHHhhCCCC
Q 025380 62 RIVAVSKTKPVSVIRQVYEAGHRCFGENYV------Q-------EIV-EKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPN 127 (253)
Q Consensus 62 ~L~aVvK~h~~~~i~~~~~~G~~~fGen~v------q-------Ea~-~~~~~~~~~i~~h~IG~lq~nk~~~~~~~~~~ 127 (253)
.++.++ .|..+++..+.+.|++++|.+.+ + +.+ ..+.....++.+.-+|.+.++.+..+.+ -.
T Consensus 136 ~~iG~S-~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI~~~ni~~~~~--aG 212 (243)
T 3o63_A 136 TLIGRS-THDPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGINAQRLPAVLD--AG 212 (243)
T ss_dssp CEEEEE-ECSHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSCCTTTHHHHHH--TT
T ss_pred CEEEEe-CCCHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCCCHHHHHHHHH--cC
Confidence 356665 58888888888899999776432 0 111 1222211233345678888888888875 12
Q ss_pred ccEEEEeC
Q 025380 128 LAMVESVD 135 (253)
Q Consensus 128 ~~li~sVd 135 (253)
++.+..+.
T Consensus 213 a~gvav~s 220 (243)
T 3o63_A 213 ARRIVVVR 220 (243)
T ss_dssp CCCEEESH
T ss_pred CCEEEEeH
Confidence 44444443
No 53
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.26 E-value=43 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=21.0
Q ss_pred CCccCCChhhHHHHHHHHHhcCCCeeEe
Q 025380 167 ESKSGVEPSGCLELVKHVSQNCPNLEFC 194 (253)
Q Consensus 167 ~~R~Gv~p~e~~~l~~~i~~~~~~L~l~ 194 (253)
..++||+.+++..++..+. +-.-|++.
T Consensus 32 a~kygV~kdeV~~~LrrLe-~KGLI~le 58 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALK-NKGLIAVE 58 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHH-HTTSEEEE
T ss_pred HHHhCCCHHHHHHHHHHHH-HCCCeecc
Confidence 4799999999999999987 53445554
No 54
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=24.87 E-value=15 Score=34.05 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=92.1
Q ss_pred CCCCcEEEEEeccCCHHH----HHHHHHcCCcc--cccccHHHHHHHHh---c-----CCCCc--eEEeeCCCCcccHHH
Q 025380 57 PPDRIRIVAVSKTKPVSV----IRQVYEAGHRC--FGENYVQEIVEKAA---Q-----LPDDL--EWHFIGNLQSNKVKP 120 (253)
Q Consensus 57 ~p~~v~L~aVvK~h~~~~----i~~~~~~G~~~--fGen~vqEa~~~~~---~-----~~~~i--~~h~IG~lq~nk~~~ 120 (253)
.|-.|+=|.-++|...+. |.++.++|++. +.++..++|..+.. . .+-|| .+||-+++-...+..
T Consensus 22 ~PI~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~vPLVADiHF~~~~al~a~~~ 101 (406)
T 4g9p_A 22 HPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPK 101 (406)
T ss_dssp SCCEEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECCSSHHHHHHHCHH
T ss_pred CceeeeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCCCceEeeecccHHHHHHHHHH
Confidence 455566676677766643 45556789887 89999998876532 1 23342 236544432221122
Q ss_pred HhhCCCCccEEE-EeC----CHHHHHHHHHHHHhcCCCcceEEEEEeCCCCCC----ccC-----C-Ch--------hhH
Q 025380 121 LLAGVPNLAMVE-SVD----NEKIAGRLNRMVETMGRKPLKVLVQVNTSGEES----KSG-----V-EP--------SGC 177 (253)
Q Consensus 121 ~~~~~~~~~li~-sVd----s~~~a~~L~~~a~~~~~~~~~V~lqVnTG~e~~----R~G-----v-~p--------~e~ 177 (253)
+.+.+..+.+-+ .+. +.+....+-+.|.+.+. +|-|=||-|.-.. |+| - .| +.+
T Consensus 102 ~a~~~dkiRINPGNig~~~k~~e~~~~vv~~ak~~~~---pIRIGVN~GSL~~~ll~k~~d~~~~~~~p~~~~~v~~eam 178 (406)
T 4g9p_A 102 MAEALDKFRINPGTLGRGRHKDEHFAEMIRIAMDLGK---PVRIGANWGSLDPALLTELMDRNASRPEPKSAHEVVLEAL 178 (406)
T ss_dssp HHHHCSEEEECTTSSCSTHHHHHHHHHHHHHHHHHTC---CEEEEEEGGGCCHHHHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHhHHhhcccCccccCccccHHHHHHHHHHHHHHccC---CceeccccccccHHHHHHhhcccccCCCccchhhhHHHHH
Confidence 221111111111 122 34566777788888776 5778899885221 221 1 11 111
Q ss_pred -HHHH---HHHHh-cCCCeeEeEEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeeeccCcchHHHHHHcCCCC
Q 025380 178 -LELV---KHVSQ-NCPNLEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAVRNTLLL 252 (253)
Q Consensus 178 -~~l~---~~i~~-~~~~L~l~GLmth~a~~~~~~~~~F~~l~~~~~~l~~~~~~~~~~~~LSmGMS~D~~~Ai~~Gs~~ 252 (253)
...+ +.+.. .++.-++ +.++-+.+.....+.++.|.+ ++ .|++.....+=-||.+|-..-|+..|++|
T Consensus 179 VeSAl~~~~~~~~~~f~~~~i--viS~KaSdv~~~i~aYr~la~---~~--dyPLHLGvTEAG~~~~G~IKSaigiG~LL 251 (406)
T 4g9p_A 179 VESAVRAYEAALEMGLGEDKL--VLSAKVSKARDLVWVYRELAR---RT--QAPLHLGLTEAGMGVKGIVASAAALAPLL 251 (406)
T ss_dssp HHHHHHHHHHHHHHTCCGGGE--EEEEECSSHHHHHHHHHHHHH---HC--CSCBEECCTTCBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhe--EEEeecCCHHHHHHHHHHHHH---hC--CCCceeeeecCCCcccceechHHHHHHHH
Confidence 1111 22210 1211111 234443322222233333322 22 24444445677788899999999888765
No 55
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.41 E-value=3.5e+02 Score=24.41 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=59.0
Q ss_pred HHHHHcCCcccccccHHHHHHHHhcCCCCceEEeeCCCCcccHHHHhhCCCCcc-EEEEeCCHHHHHHHHHHHHhcCCCc
Q 025380 76 RQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLA-MVESVDNEKIAGRLNRMVETMGRKP 154 (253)
Q Consensus 76 ~~~~~~G~~~fGen~vqEa~~~~~~~~~~i~~h~IG~lq~nk~~~~~~~~~~~~-li~sVds~~~a~~L~~~a~~~~~~~ 154 (253)
+.+.+.|........=.+.+........++ +.|......+-..+ .+..++ ++.++++.+....+...+++.+. .
T Consensus 21 ~~L~~~g~~vvvId~d~~~v~~~~~~g~~v---i~GDat~~~~L~~a-gi~~A~~viv~~~~~~~n~~i~~~ar~~~p-~ 95 (413)
T 3l9w_A 21 RLLLSSGVKMVVLDHDPDHIETLRKFGMKV---FYGDATRMDLLESA-GAAKAEVLINAIDDPQTNLQLTEMVKEHFP-H 95 (413)
T ss_dssp HHHHHTTCCEEEEECCHHHHHHHHHTTCCC---EESCTTCHHHHHHT-TTTTCSEEEECCSSHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHhCCCeE---EEcCCCCHHHHHhc-CCCccCEEEECCCChHHHHHHHHHHHHhCC-C
Confidence 445567777765554444443222221222 22554333322221 234455 46777887777777777777775 6
Q ss_pred ceEEEEEeC----------CC-----------------CCCccCCChhhHHHHHHHHH
Q 025380 155 LKVLVQVNT----------SG-----------------EESKSGVEPSGCLELVKHVS 185 (253)
Q Consensus 155 ~~V~lqVnT----------G~-----------------e~~R~Gv~p~e~~~l~~~i~ 185 (253)
++|..+++. |- -+..+|++++++...++.++
T Consensus 96 ~~Iiara~~~~~~~~L~~~Gad~Vi~~~~~~a~~la~~~L~~lg~~~~~~~~~~~~~r 153 (413)
T 3l9w_A 96 LQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFR 153 (413)
T ss_dssp CEEEEEESSHHHHHHHHHTTCSSCEETTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778888761 10 13467888887777776665
No 56
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=22.92 E-value=1.5e+02 Score=24.72 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhcCCCCceEEee-CCCCcccHHHHhhCCCCccE-EEEeCCHHHHHHHHHHHHhcCC
Q 025380 89 NYVQEIVEKAAQLPDDLEWHFI-GNLQSNKVKPLLAGVPNLAM-VESVDNEKIAGRLNRMVETMGR 152 (253)
Q Consensus 89 n~vqEa~~~~~~~~~~i~~h~I-G~lq~nk~~~~~~~~~~~~l-i~sVds~~~a~~L~~~a~~~~~ 152 (253)
.+++.+......+.+.+.+..+ +.+....+..++ ..+++ +.+.|+.+.-..+++.+.+.+.
T Consensus 85 ~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~---~~~DvVi~~~d~~~~~~~l~~~~~~~~~ 147 (249)
T 1jw9_B 85 PKVESARDALTRINPHIAITPVNALLDDAELAALI---AEHDLVLDCTDNVAVRNQLNAGCFAAKV 147 (249)
T ss_dssp BHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH---HTSSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH---hCCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 6676665544444333333332 445444455566 34776 6678999988899999988775
Done!