Query 025381
Match_columns 253
No_of_seqs 253 out of 806
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:10:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 3.6E-19 1.2E-23 127.9 4.0 56 57-113 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 2.5E-17 8.6E-22 124.4 5.6 65 55-119 11-76 (80)
3 2kiz_A E3 ubiquitin-protein li 98.1 3.5E-06 1.2E-10 59.5 4.7 54 54-114 9-64 (69)
4 2ep4_A Ring finger protein 24; 98.1 5.2E-06 1.8E-10 59.4 5.6 51 57-114 13-65 (74)
5 1v87_A Deltex protein 2; ring- 98.0 5.6E-06 1.9E-10 63.9 4.6 51 59-114 25-95 (114)
6 2ect_A Ring finger protein 126 98.0 3.7E-06 1.3E-10 60.7 3.3 53 56-115 12-66 (78)
7 2ecm_A Ring finger and CHY zin 97.9 4.3E-06 1.5E-10 56.2 2.7 48 58-112 4-54 (55)
8 1x4j_A Ring finger protein 38; 97.9 4.6E-06 1.6E-10 60.0 2.7 52 55-113 19-72 (75)
9 2ecl_A Ring-box protein 2; RNF 97.8 5.4E-06 1.8E-10 61.3 1.7 27 85-113 50-76 (81)
10 1iym_A EL5; ring-H2 finger, ub 97.8 5.4E-06 1.9E-10 55.9 1.5 48 58-112 4-54 (55)
11 2l0b_A E3 ubiquitin-protein li 97.8 1.5E-05 5.3E-10 59.8 3.6 52 55-113 36-89 (91)
12 1chc_A Equine herpes virus-1 r 97.8 2E-05 6.9E-10 55.2 4.0 49 58-113 4-52 (68)
13 2ct2_A Tripartite motif protei 97.7 2.6E-05 8.7E-10 57.0 4.0 53 56-113 12-68 (88)
14 2yur_A Retinoblastoma-binding 97.7 2.2E-05 7.6E-10 56.6 3.4 51 56-112 12-63 (74)
15 2ea6_A Ring finger protein 4; 97.7 1.2E-05 4.1E-10 56.1 1.9 51 56-113 12-68 (69)
16 2ecn_A Ring finger protein 141 97.7 1.6E-05 5.6E-10 56.1 2.1 50 56-114 12-61 (70)
17 2ecv_A Tripartite motif-contai 97.6 9.1E-05 3.1E-09 53.3 5.8 53 56-114 16-72 (85)
18 2d8t_A Dactylidin, ring finger 97.6 1.3E-05 4.5E-10 57.1 1.2 51 56-114 12-62 (71)
19 2ct0_A Non-SMC element 1 homol 97.6 4E-05 1.4E-09 56.9 3.4 54 56-114 12-65 (74)
20 2ecw_A Tripartite motif-contai 97.6 7.6E-05 2.6E-09 53.7 4.7 52 57-114 17-72 (85)
21 2ysl_A Tripartite motif-contai 97.6 3.9E-05 1.3E-09 54.3 3.0 53 55-113 16-69 (73)
22 2djb_A Polycomb group ring fin 97.6 6.2E-05 2.1E-09 53.7 4.0 50 57-114 13-63 (72)
23 3ng2_A RNF4, snurf, ring finge 97.5 1.8E-05 6.3E-10 55.7 0.9 53 55-114 6-64 (71)
24 2ecy_A TNF receptor-associated 97.5 5E-05 1.7E-09 53.2 3.2 51 56-113 12-62 (66)
25 2csy_A Zinc finger protein 183 97.5 8.7E-05 3E-09 54.0 4.3 49 56-112 12-60 (81)
26 2xeu_A Ring finger protein 4; 97.5 1.9E-05 6.5E-10 54.2 0.2 50 58-114 2-57 (64)
27 3dpl_R Ring-box protein 1; ubi 97.4 5.7E-05 2E-09 59.2 2.7 48 59-113 37-101 (106)
28 3ztg_A E3 ubiquitin-protein li 97.4 0.0001 3.6E-09 54.5 3.8 52 55-112 9-61 (92)
29 1t1h_A Gspef-atpub14, armadill 97.4 9.8E-05 3.3E-09 53.1 3.0 53 55-114 4-56 (78)
30 2ecj_A Tripartite motif-contai 97.3 0.00015 5.2E-09 48.9 3.5 46 56-107 12-58 (58)
31 2ysj_A Tripartite motif-contai 97.3 0.00027 9.2E-09 48.8 4.4 47 55-107 16-63 (63)
32 2egp_A Tripartite motif-contai 97.2 8.1E-05 2.8E-09 53.3 0.9 52 56-113 9-65 (79)
33 1e4u_A Transcriptional repress 97.2 0.00033 1.1E-08 51.9 4.1 54 57-114 9-63 (78)
34 3lrq_A E3 ubiquitin-protein li 97.1 0.0002 6.8E-09 54.5 2.2 50 57-113 20-70 (100)
35 1g25_A CDK-activating kinase a 97.1 0.00033 1.1E-08 48.8 3.1 51 58-114 2-56 (65)
36 4a0k_B E3 ubiquitin-protein li 97.1 9.6E-05 3.3E-09 59.2 0.3 48 59-113 48-112 (117)
37 1jm7_A BRCA1, breast cancer ty 97.0 0.00054 1.9E-08 52.1 3.7 50 59-114 21-71 (112)
38 3fl2_A E3 ubiquitin-protein li 96.9 0.00053 1.8E-08 53.7 3.3 49 58-113 51-99 (124)
39 2y43_A E3 ubiquitin-protein li 96.9 0.00034 1.2E-08 52.6 1.8 48 58-113 21-69 (99)
40 4ap4_A E3 ubiquitin ligase RNF 96.8 0.00018 6.2E-09 55.6 0.0 51 57-114 5-61 (133)
41 2ckl_B Ubiquitin ligase protei 96.7 0.00052 1.8E-08 56.3 2.1 49 58-113 53-102 (165)
42 4ayc_A E3 ubiquitin-protein li 96.7 0.00037 1.3E-08 55.8 1.1 47 59-113 53-99 (138)
43 2ckl_A Polycomb group ring fin 96.6 0.00052 1.8E-08 52.5 1.0 49 57-113 13-62 (108)
44 1z6u_A NP95-like ring finger p 96.5 0.0012 4.2E-08 54.1 2.9 50 58-114 77-126 (150)
45 3hct_A TNF receptor-associated 96.4 0.0013 4.3E-08 51.3 2.3 52 56-114 15-66 (118)
46 3k1l_B Fancl; UBC, ring, RWD, 96.4 0.0014 4.7E-08 62.0 2.8 58 55-115 304-375 (381)
47 1rmd_A RAG1; V(D)J recombinati 96.3 0.00087 3E-08 51.7 1.0 50 58-114 22-71 (116)
48 2y1n_A E3 ubiquitin-protein li 96.2 0.002 6.7E-08 61.2 3.0 50 58-114 331-380 (389)
49 4ap4_A E3 ubiquitin ligase RNF 95.9 0.0012 4E-08 51.0 -0.1 52 56-114 69-126 (133)
50 3l11_A E3 ubiquitin-protein li 95.8 0.0011 3.7E-08 51.1 -1.0 50 57-113 13-62 (115)
51 2vje_B MDM4 protein; proto-onc 95.3 0.0048 1.6E-07 43.3 1.1 50 56-112 4-55 (63)
52 2c2l_A CHIP, carboxy terminus 95.3 0.0099 3.4E-07 51.2 3.3 50 57-113 206-255 (281)
53 2kr4_A Ubiquitin conjugation f 95.3 0.017 5.7E-07 42.8 4.1 50 57-114 12-61 (85)
54 1jm7_B BARD1, BRCA1-associated 95.2 0.0038 1.3E-07 48.4 0.4 47 57-113 20-67 (117)
55 2yu4_A E3 SUMO-protein ligase 94.7 0.021 7.3E-07 42.8 3.3 51 54-110 2-59 (94)
56 4ic3_A E3 ubiquitin-protein li 94.6 0.0058 2E-07 44.0 -0.1 44 58-113 23-67 (74)
57 3knv_A TNF receptor-associated 94.6 0.0051 1.7E-07 49.9 -0.5 51 55-112 27-77 (141)
58 1bor_A Transcription factor PM 94.5 0.0091 3.1E-07 40.7 0.8 46 57-113 4-49 (56)
59 2vje_A E3 ubiquitin-protein li 94.5 0.013 4.4E-07 41.2 1.6 48 58-112 7-56 (64)
60 3hcs_A TNF receptor-associated 94.3 0.018 6.3E-07 47.1 2.3 53 55-114 14-66 (170)
61 3nw0_A Non-structural maintena 94.3 0.025 8.4E-07 50.0 3.3 52 57-114 178-230 (238)
62 2kre_A Ubiquitin conjugation f 94.3 0.029 9.8E-07 43.0 3.2 50 56-113 26-75 (100)
63 1wim_A KIAA0161 protein; ring 93.6 0.029 9.9E-07 41.7 2.1 49 58-111 4-62 (94)
64 1wgm_A Ubiquitin conjugation f 93.5 0.05 1.7E-06 41.5 3.3 51 57-114 20-70 (98)
65 2f42_A STIP1 homology and U-bo 93.2 0.043 1.5E-06 46.8 2.7 51 57-114 104-154 (179)
66 2ea5_A Cell growth regulator w 93.0 0.075 2.6E-06 37.8 3.3 47 56-114 12-59 (68)
67 2ecg_A Baculoviral IAP repeat- 92.9 0.059 2E-06 38.5 2.7 44 58-113 24-68 (75)
68 3t6p_A Baculoviral IAP repeat- 87.8 0.077 2.6E-06 49.2 -0.8 46 57-114 293-339 (345)
69 2lri_C Autoimmune regulator; Z 86.1 0.25 8.4E-06 35.5 1.2 53 53-111 6-60 (66)
70 3htk_C E3 SUMO-protein ligase 83.5 0.38 1.3E-05 43.6 1.6 53 56-114 178-233 (267)
71 2yho_A E3 ubiquitin-protein li 83.1 0.24 8.3E-06 36.0 0.1 44 59-114 18-62 (79)
72 2bay_A PRE-mRNA splicing facto 82.0 0.55 1.9E-05 32.7 1.6 46 60-113 4-50 (61)
73 1weu_A Inhibitor of growth fam 75.4 1.6 5.5E-05 33.3 2.5 54 53-112 30-87 (91)
74 1weo_A Cellulose synthase, cat 68.0 15 0.00051 28.3 6.4 54 57-113 14-70 (93)
75 2ysm_A Myeloid/lymphoid or mix 63.4 1.3 4.3E-05 34.0 -0.4 51 54-107 2-54 (111)
76 2l43_A N-teminal domain from h 61.0 1.5 5E-05 33.0 -0.4 56 55-112 21-77 (88)
77 2ku3_A Bromodomain-containing 60.7 1.4 4.9E-05 31.8 -0.5 53 55-109 12-65 (71)
78 1wen_A Inhibitor of growth fam 60.5 2.1 7.1E-05 30.9 0.3 52 54-111 11-66 (71)
79 1f62_A Transcription factor WS 56.1 2.3 7.8E-05 28.2 -0.1 46 61-109 2-49 (51)
80 2k16_A Transcription initiatio 52.5 1.8 6.2E-05 30.9 -1.1 53 57-112 16-70 (75)
81 2jwa_A Receptor tyrosine-prote 47.7 24 0.00082 23.5 3.9 30 221-251 13-42 (44)
82 2l5u_A Chromodomain-helicase-D 43.5 5.8 0.0002 27.5 0.4 48 57-110 9-58 (61)
83 2ko5_A Ring finger protein Z; 40.7 9.1 0.00031 29.8 1.1 50 57-115 26-75 (99)
84 2vpb_A Hpygo1, pygopus homolog 39.9 9.7 0.00033 26.9 1.1 35 56-93 5-41 (65)
85 2vnf_A ING 4, P29ING4, inhibit 39.5 1.6 5.3E-05 30.5 -3.1 50 54-109 5-58 (60)
86 2ri7_A Nucleosome-remodeling f 37.0 6 0.00021 32.2 -0.5 52 56-111 5-60 (174)
87 1p1p_A AA-conotoxin PIVA; neur 34.9 13 0.00045 22.0 0.9 17 72-88 8-24 (26)
88 3u5n_A E3 ubiquitin-protein li 33.7 3.3 0.00011 35.0 -2.7 50 58-113 6-57 (207)
89 1wew_A DNA-binding family prot 31.2 38 0.0013 24.2 3.1 53 54-111 11-73 (78)
90 2yt5_A Metal-response element- 30.2 5.2 0.00018 27.7 -1.7 52 56-110 3-61 (66)
91 2g6q_A Inhibitor of growth pro 29.5 3 0.0001 29.3 -3.1 49 55-109 7-59 (62)
92 2yql_A PHD finger protein 21A; 28.4 4.2 0.00014 27.5 -2.4 48 56-109 6-55 (56)
93 2lbm_A Transcriptional regulat 27.8 30 0.001 28.2 2.2 47 56-108 60-115 (142)
94 2lv9_A Histone-lysine N-methyl 27.4 11 0.00038 28.5 -0.4 52 53-108 22-74 (98)
95 1znf_A 31ST zinc finger from X 27.3 20 0.00069 18.4 0.8 12 102-113 2-13 (27)
96 2jmi_A Protein YNG1, ING1 homo 26.5 5.1 0.00018 30.4 -2.4 53 54-110 21-76 (90)
97 3v43_A Histone acetyltransfera 26.4 26 0.0009 26.7 1.6 34 58-94 4-43 (112)
98 1ard_A Yeast transcription fac 25.6 22 0.00075 18.4 0.8 12 102-113 3-14 (29)
99 3o36_A Transcription intermedi 25.0 7.8 0.00027 32.0 -1.8 49 58-112 3-53 (184)
100 4gne_A Histone-lysine N-methyl 24.8 14 0.00048 28.7 -0.3 49 54-108 10-60 (107)
101 3kv5_D JMJC domain-containing 24.5 9.6 0.00033 36.8 -1.5 54 57-114 35-92 (488)
102 1wem_A Death associated transc 24.2 29 0.00098 24.6 1.3 51 59-113 16-73 (76)
103 2lvu_A Zinc finger and BTB dom 30.0 16 0.00055 18.8 0.0 13 102-114 3-15 (26)
104 2e6r_A Jumonji/ARID domain-con 24.1 6 0.00021 29.7 -2.4 52 56-110 13-66 (92)
105 1x4i_A Inhibitor of growth pro 24.0 14 0.00046 26.5 -0.5 53 56-112 3-57 (70)
106 2kvh_A Zinc finger and BTB dom 23.8 21 0.00072 18.5 0.4 12 102-113 4-15 (27)
107 2m0f_A Zinc finger and BTB dom 23.5 23 0.0008 18.2 0.6 12 102-113 3-14 (29)
108 3c6w_A P28ING5, inhibitor of g 23.0 4.6 0.00016 28.0 -3.1 48 56-109 6-57 (59)
109 1wev_A Riken cDNA 1110020M19; 22.7 7.7 0.00026 28.8 -2.0 53 58-113 15-75 (88)
110 3ql9_A Transcriptional regulat 22.2 34 0.0012 27.4 1.6 47 56-108 54-109 (129)
111 2kvf_A Zinc finger and BTB dom 21.3 25 0.00086 18.2 0.4 12 102-113 4-15 (28)
112 2jny_A Uncharacterized BCR; st 21.3 24 0.00082 25.3 0.4 32 73-114 10-41 (67)
113 2kvg_A Zinc finger and BTB dom 20.8 23 0.0008 18.5 0.2 12 102-113 4-15 (27)
114 2k5c_A Uncharacterized protein 20.7 25 0.00087 26.7 0.5 34 101-134 51-89 (95)
115 2m0e_A Zinc finger and BTB dom 20.6 30 0.001 17.6 0.7 12 102-113 3-14 (29)
116 1jb0_I Photosystem 1 reaction 20.4 1E+02 0.0035 19.9 3.3 34 212-245 3-36 (38)
117 1rik_A E6APC1 peptide; E6-bind 20.1 28 0.00095 18.0 0.4 13 102-114 3-15 (29)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=3.6e-19 Score=127.87 Aligned_cols=56 Identities=34% Similarity=0.777 Sum_probs=50.8
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
++...||||+++.+ ++++.||+|+||++|||+.||++|++.+++.+||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45679999998854 468999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=124.36 Aligned_cols=65 Identities=34% Similarity=0.828 Sum_probs=55.7
Q ss_pred CCCCCCeeeEeccCCC-CCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccCccCCC
Q 025381 55 SPSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPP 119 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~yt~p~ 119 (253)
.+.+...|+||+++.+ +++++.||+|+|+++++|+.||++|++.+++.+||+|+++|......+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 3456678999998754 4678999999999999999999999999988999999999998754443
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.08 E-value=3.5e-06 Score=59.51 Aligned_cols=54 Identities=26% Similarity=0.625 Sum_probs=41.2
Q ss_pred CCCCCCCeeeEeccCCCC--CCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 54 SSPSKLVECRICHEEDED--SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d--~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
+.......|.||++...+ .....||. +.+|..|+.+|++.++ .|++|++++...
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 344567789999987543 34567864 6899999999998754 699999988754
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=5.2e-06 Score=59.35 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=38.9
Q ss_pred CCCCeeeEeccCCCCCC--cccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~--L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.....|.||++...+.. ...||. +.+|..|+.+|++.+. .|++|++++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccc
Confidence 45678999999865432 234764 6899999999998754 899999988743
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.99 E-value=5.6e-06 Score=63.86 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=38.8
Q ss_pred CCeeeEeccCCCCCC--------------c---ccCcccCCCCccccHHHHHHHHHh---cCCccccccccccccC
Q 025381 59 LVECRICHEEDEDSN--------------M---EIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (253)
Q Consensus 59 ~~~CRIC~ee~~d~~--------------L---~~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiC~~~y~~~ 114 (253)
...|-||++...+.. . ..||. +.+|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998743211 1 56775 78999999999975 4567999999999754
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.98 E-value=3.7e-06 Score=60.71 Aligned_cols=53 Identities=23% Similarity=0.679 Sum_probs=40.5
Q ss_pred CCCCCeeeEeccCCCCC--CcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccCc
Q 025381 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~y 115 (253)
......|.||++...+. ....||. +.+|..|+.+|++.+ ..|++|++++...-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 34567899999886432 2345765 789999999999654 68999999988653
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.93 E-value=4.3e-06 Score=56.24 Aligned_cols=48 Identities=25% Similarity=0.587 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCC---CCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 58 KLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 58 ~~~~CRIC~ee~~d---~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
....|.||++...+ .....||. +.+|..|+.+|++.+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 45689999988532 24678874 689999999999876 78999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=4.6e-06 Score=60.01 Aligned_cols=52 Identities=33% Similarity=0.732 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCC--CcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
...+...|.||+++..+. ....||. +.+|..|+.+|++.+ ..|++|++++.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 345677999999886433 2457865 689999999999765 489999998865
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=5.4e-06 Score=61.26 Aligned_cols=27 Identities=19% Similarity=0.720 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 025381 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
+..|..||.+|++.+ .+|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 789999999999765 489999998864
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.80 E-value=5.4e-06 Score=55.87 Aligned_cols=48 Identities=35% Similarity=0.749 Sum_probs=36.5
Q ss_pred CCCeeeEeccCCCC--CCcccC-cccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 58 KLVECRICHEEDED--SNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 58 ~~~~CRIC~ee~~d--~~L~~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
+...|-||+++..+ .....| |. +..|..|+.+|++. ...|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45689999988543 234555 54 68999999999965 458999998764
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.76 E-value=1.5e-05 Score=59.78 Aligned_cols=52 Identities=33% Similarity=0.816 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCC--CcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
..++...|-||+++..++ ....||. +.+|..|+.+|++.+ ..|++|++++.+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 345678999999885433 3457865 789999999999654 489999998864
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.76 E-value=2e-05 Score=55.21 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=39.5
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
....|.||++...+.....||. +..|..|+.+|+..+ ..|++|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 4568999999876544678875 679999999999765 589999998864
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=2.6e-05 Score=56.98 Aligned_cols=53 Identities=19% Similarity=0.493 Sum_probs=41.9
Q ss_pred CCCCCeeeEeccCCCCC---CcccCcccCCCCccccHHHHHHHHHhc-CCcccccccccccc
Q 025381 56 PSKLVECRICHEEDEDS---NMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~---~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiC~~~y~~ 113 (253)
..+...|.||++...+. +...||. +.+|..|+.+|++.+ +...|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 44567899999886431 5567774 789999999999876 46799999998875
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.70 E-value=2.2e-05 Score=56.56 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=41.5
Q ss_pred CCCCCeeeEeccCCCCCCcccC-cccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
..+...|.||++...+ +...| |. +.+|..|+.+|++.++...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456789999887653 66677 65 7899999999999887789999999754
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=1.2e-05 Score=56.08 Aligned_cols=51 Identities=25% Similarity=0.593 Sum_probs=39.0
Q ss_pred CCCCCeeeEeccCCCC----C--CcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 56 PSKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d----~--~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
..+...|-||++...+ . ....||. +.+|..|+.+|++. ...|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccCc
Confidence 4567789999987422 1 1567775 78999999999987 4589999998763
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=1.6e-05 Score=56.12 Aligned_cols=50 Identities=30% Similarity=0.773 Sum_probs=40.8
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
..+...|.||++...+ ...||. +.+|..|+.+|+. ....|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 3456789999998765 778875 6799999999996 567899999988743
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=9.1e-05 Score=53.28 Aligned_cols=53 Identities=26% Similarity=0.645 Sum_probs=42.0
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh----cCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE----KGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~----k~~~~CEiC~~~y~~~ 114 (253)
..+...|.||++...+ +...||. +.+|..|+.+|+.. .+...|++|++++...
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3456789999988654 5556765 67999999999987 3578999999998753
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=1.3e-05 Score=57.12 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=40.3
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
..+...|.||++...+ +...||. +.+|..|+.+|+..+ ..|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 3456789999987643 5667865 789999999999654 6899999998754
No 19
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.58 E-value=4e-05 Score=56.91 Aligned_cols=54 Identities=20% Similarity=0.527 Sum_probs=40.9
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
++....|-||.+....+. .-+ .| -+-+|..||.+|++.++..+|++|++++...
T Consensus 12 ~~~i~~C~IC~~~i~~g~-~C~-~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-SCE-TC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-ECS-SS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred cCCCCcCcchhhHcccCC-ccC-CC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 456789999998864322 111 45 3679999999999888778999999998744
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.57 E-value=7.6e-05 Score=53.71 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=41.6
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhc----CCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK----GDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k----~~~~CEiC~~~y~~~ 114 (253)
.+...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|++++...
T Consensus 17 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 456789999988643 5667865 689999999999874 478999999988753
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=3.9e-05 Score=54.31 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=41.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh-cCCcccccccccccc
Q 025381 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEICREQYNP 113 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~-k~~~~CEiC~~~y~~ 113 (253)
...+...|.||++...+ +...||. +.+|..|+.+|++. ++...|++|++++..
T Consensus 16 ~~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34567799999987653 5556764 78999999999974 456799999998874
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=6.2e-05 Score=53.69 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCcc-cCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.+...|.||++...+ +.. .||. +.+|..|+.+|++. ...|++|++++...
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID-ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS-CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC-cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 456789999888654 443 4876 67899999999976 46899999998753
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.53 E-value=1.8e-05 Score=55.65 Aligned_cols=53 Identities=25% Similarity=0.546 Sum_probs=40.5
Q ss_pred CCCCCCeeeEeccCCCC------CCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 55 SPSKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.+++...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|++++...
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 34567789999987421 12567775 789999999999765 4899999998753
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=5e-05 Score=53.19 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=39.9
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
..+...|.||++...+ +...||. +..|..|+.+|++ ++...|++|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 4567889999887543 4556765 6789999999996 456689999998864
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=8.7e-05 Score=53.96 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=39.6
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
......|.||++...+ +...||. +.+|..|+.+|++. ...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456789999988654 6677876 67899999999975 558999999986
No 26
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.46 E-value=1.9e-05 Score=54.23 Aligned_cols=50 Identities=22% Similarity=0.547 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCC------CCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 58 ~~~~CRIC~ee~~d------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
+...|.||++...+ .....||. +.+|..|+.+|++. ...|++|++++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 45689999987422 12567775 78999999999987 45899999988753
No 27
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.44 E-value=5.7e-05 Score=59.23 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=35.4
Q ss_pred CCeeeEeccCCCCC-----------------CcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 59 LVECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 59 ~~~CRIC~ee~~d~-----------------~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
...|-||++..++. ....||. +..|..||.+|+.. ..+|++|+++|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45688888764321 1235665 78999999999976 4689999999863
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.41 E-value=0.0001 Score=54.55 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=42.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccC-cccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
...+...|.||++... .+...| |. +.+++.||.+|+..++...|++|++++.
T Consensus 9 ~~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456789999998765 466777 54 7789999999999888889999999874
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.36 E-value=9.8e-05 Score=53.11 Aligned_cols=53 Identities=21% Similarity=0.392 Sum_probs=41.4
Q ss_pred CCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
...+.-.|.||++.-.+ +...||. +..++.|+.+|++ ++..+|++|++++...
T Consensus 4 ~~~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLHA 56 (78)
T ss_dssp CCSSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSSC
T ss_pred CCcccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCChh
Confidence 34567789999887653 6667765 7899999999996 3567899999988743
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00015 Score=48.87 Aligned_cols=46 Identities=24% Similarity=0.683 Sum_probs=36.0
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh-cCCcccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEIC 107 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~-k~~~~CEiC 107 (253)
..+...|.||++...+ +...||. +.+|..|+.+|++. ++...|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999988754 5567765 67999999999875 467789988
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00027 Score=48.84 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=36.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhc-CCcccccc
Q 025381 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEIC 107 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiC 107 (253)
...+...|.||++...+ +...||. +.+|..|+.+|++.+ +...|++|
T Consensus 16 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567789999988653 6566775 789999999999864 46789988
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.18 E-value=8.1e-05 Score=53.31 Aligned_cols=52 Identities=25% Similarity=0.570 Sum_probs=41.4
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhc-----CCcccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYNP 113 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-----~~~~CEiC~~~y~~ 113 (253)
..+...|.||++...+ +...||. +.+|..|+.+|++.+ +...|++|++++..
T Consensus 9 ~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3457789999988653 5566765 789999999999763 47799999999875
No 33
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.17 E-value=0.00033 Score=51.88 Aligned_cols=54 Identities=31% Similarity=0.612 Sum_probs=43.0
Q ss_pred CCCCeeeEeccCCC-CCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
++...|-||++... +.....||.| .+.+++.|+.+|.+. +...|++|+++|...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~C---GH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTC---GYQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTT---SCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCC---CCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 45678999999864 3356788888 367999999999754 567999999999853
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.08 E-value=0.0002 Score=54.53 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=40.7
Q ss_pred CCCCeeeEeccCCCCCCcc-cCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
.+...|.||++...+ +.. .||. +..|..||.+|+..++ ..|++|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 456789999988754 555 7876 7899999999998764 689999999864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.07 E-value=0.00033 Score=48.77 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=37.6
Q ss_pred CCCeeeEecc-CCCC--CC-cccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 58 KLVECRICHE-EDED--SN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 58 ~~~~CRIC~e-e~~d--~~-L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
+...|-||++ ...+ .. +..||. +.+|..|+.+|+.. +...|++|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccccc
Confidence 3567999998 3221 11 457876 68999999999864 467899999988753
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.06 E-value=9.6e-05 Score=59.22 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=0.4
Q ss_pred CCeeeEeccCCCCC----------------C-cccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 59 LVECRICHEEDEDS----------------N-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 59 ~~~CRIC~ee~~d~----------------~-L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
...|-||+++.++. + +..||. +..|..|+.+|++.+ ..|++|+++|..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 45799998774321 1 123554 789999999999774 589999999864
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.96 E-value=0.00054 Score=52.06 Aligned_cols=50 Identities=24% Similarity=0.629 Sum_probs=39.6
Q ss_pred CCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhc-CCccccccccccccC
Q 025381 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (253)
Q Consensus 59 ~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiC~~~y~~~ 114 (253)
...|.||++... .+...||. +.+|..|+.+|+..+ +...|++|+.++...
T Consensus 21 ~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 458999998764 35567765 789999999999864 457899999988754
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.90 E-value=0.00053 Score=53.67 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=39.2
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
+...|.||++...+ +...||. +.+|..|+.+|+. .+...|++|++++..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 45689999987653 5666875 6799999999997 445689999999975
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.87 E-value=0.00034 Score=52.62 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=37.9
Q ss_pred CCCeeeEeccCCCCCCcc-cCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
+...|.||++...+ +.. .||. +.+|..|+.+|+.. ...|++|++++..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 45689999988654 433 3775 68999999999975 3689999998875
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.82 E-value=0.00018 Score=55.61 Aligned_cols=51 Identities=24% Similarity=0.519 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCC------CCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d------~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.+...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|++.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCccc
Confidence 456789999987432 12567776 789999999999755 4999999998753
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.73 E-value=0.00052 Score=56.26 Aligned_cols=49 Identities=20% Similarity=0.502 Sum_probs=38.2
Q ss_pred CCCeeeEeccCCCCCCccc-CcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
+...|-||++...+ +... ||. +.+|..|+.+|+.. +...|++|+.++..
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 45589999888654 4433 765 78999999999974 46789999999853
No 42
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.72 E-value=0.00037 Score=55.83 Aligned_cols=47 Identities=23% Similarity=0.665 Sum_probs=37.4
Q ss_pred CCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 59 ~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
...|.||++...+ +...||. +.+|..|+.+|+.. ...||+|++++..
T Consensus 53 ~~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 3579999988653 6667875 78999999999965 4589999998763
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.58 E-value=0.00052 Score=52.49 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCCCCCCccc-CcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
.+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 346689999888654 5444 876 688999999999754 789999998875
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.52 E-value=0.0012 Score=54.07 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=39.9
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
+...|.||++...+ +...||. +.++..|+.+|+.. +...|++|++++...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 45689999887643 6667876 67899999999974 456899999998864
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.43 E-value=0.0013 Score=51.28 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
..+...|.||++...+ +...||. +..+..|+.+|+..++. .|++|+.++...
T Consensus 15 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 4456789999977653 5666764 78999999999987653 899999998754
No 46
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.40 E-value=0.0014 Score=61.99 Aligned_cols=58 Identities=21% Similarity=0.666 Sum_probs=42.2
Q ss_pred CCCCCCeeeEeccCCCC-CCc-ccCcc---cCCCCccccHHHHHHHHHhcCC---------ccccccccccccCc
Q 025381 55 SPSKLVECRICHEEDED-SNM-EIPCS---CCGSLKYAHRKCVQRWCNEKGD---------TTCEICREQYNPGY 115 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d-~~L-~~PC~---C~GslkyvH~~CL~~W~~~k~~---------~~CEiC~~~y~~~y 115 (253)
..+....|-||.+...+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....+
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 34567899999988643 322 34463 53 78999999999987432 58999999877654
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.35 E-value=0.00087 Score=51.74 Aligned_cols=50 Identities=28% Similarity=0.566 Sum_probs=39.8
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
+...|.||++...+ +...||. +.++..|+.+|++.+ ...|++|+.++...
T Consensus 22 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 45689999888653 5667765 689999999999874 45899999998754
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.24 E-value=0.002 Score=61.22 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=40.0
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
....|.||++... .+...||. +..|..|+.+|+.. +...|++|+.++...
T Consensus 331 ~~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3479999988764 36778987 46799999999974 456899999988754
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.94 E-value=0.0012 Score=50.98 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=38.8
Q ss_pred CCCCCeeeEeccCCCC----CC--cccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDED----SN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d----~~--L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.++...|-||++...+ .. ...||. +..|..|+.+|++.+ ..|++|++.+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 3556789999987421 12 445664 789999999999765 4899999998754
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.77 E-value=0.0011 Score=51.12 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=39.4
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
.+...|.||++... .+...||. +.++..|+.+|++. +...|++|++.+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 44578999998764 36666875 78999999999954 45789999999874
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.31 E-value=0.0048 Score=43.30 Aligned_cols=50 Identities=20% Similarity=0.531 Sum_probs=36.7
Q ss_pred CCCCCeeeEeccCCCCCC-cccCcccCCCCcc-ccHHHHHHHHHhcCCccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSN-MEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~-L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
.+....|.||++...+.. +..||. +. +=..|+.+|.+.+ ..|++|++++.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 345668999998764432 235987 44 6789999998653 68999999875
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.28 E-value=0.0099 Score=51.16 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=40.0
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
...-.|-||++--.+ |.+.||. +-.-+.|+.+|+..++.. ||+|+.++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 356789999887654 8888974 567799999999876544 9999998874
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=95.28 E-value=0.017 Score=42.80 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.+.-.|-||++--.+ +...||. +-.-+.|+.+|+.. ..+|++|++++...
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCGG
T ss_pred chheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCChH
Confidence 457789999887654 7788864 56889999999985 46899999988753
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.21 E-value=0.0038 Score=48.42 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=37.5
Q ss_pred CCCCeeeEeccCCCCCCccc-CcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
.+...|.||++...+ +... ||. +.++..|+.+|+. ..|++|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 356789999887654 5555 775 7889999999986 689999999854
No 55
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.69 E-value=0.021 Score=42.84 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCCCCCeeeEeccCCCCCCcccC-cccCCCCccccHHHHHHHHHhc----CCccccc--cccc
Q 025381 54 SSPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEK----GDTTCEI--CREQ 110 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~~P-C~C~GslkyvH~~CL~~W~~~k----~~~~CEi--C~~~ 110 (253)
++..+.-.|-||++--.+ |...| |. +-.-+.||.+|+... +..+|++ |...
T Consensus 2 ~~~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 2 SSGSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSCSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 445567789999877654 77775 65 578899999999864 4679999 8876
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.61 E-value=0.0058 Score=43.97 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=35.4
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCcc-ccHHHHHHHHHhcCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
+...|.||++... ++...||. +. +...|+.+| ..|++|++++..
T Consensus 23 ~~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4568999998764 35667986 66 899999999 689999998864
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.58 E-value=0.0051 Score=49.91 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=39.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
...+.-.|-||++.-.+ +...||. +.+++.|+.+|++. +...|++|+++..
T Consensus 27 ~l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 34567789999987643 5666765 67899999999963 4568999998653
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.52 E-value=0.0091 Score=40.67 Aligned_cols=46 Identities=20% Similarity=0.558 Sum_probs=35.5
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
.+...|.||++...+ +...||. +.++..|+.+| ...|++|++++..
T Consensus 4 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 456779999987653 6778875 56889998773 5689999998864
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.50 E-value=0.013 Score=41.19 Aligned_cols=48 Identities=17% Similarity=0.495 Sum_probs=35.0
Q ss_pred CCCeeeEeccCCCCCCc-ccCcccCCCCcc-ccHHHHHHHHHhcCCccccccccccc
Q 025381 58 KLVECRICHEEDEDSNM-EIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L-~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
+...|.||++...+.-+ ..||. +. +=..|+.+|.+. +..|++|++++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 45689999988754322 23987 44 348999999964 457999999876
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.31 E-value=0.018 Score=47.05 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=40.8
Q ss_pred CCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
...+.-.|-||++...+ +...||. +.+.+.|+.+|++.++. +|++|+.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcchh
Confidence 34566789999987653 5666654 67899999999987543 899999988754
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.31 E-value=0.025 Score=49.98 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=40.2
Q ss_pred CCCCeeeEeccCCCCCCcccCcc-cCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
+....|-||.+-...+ .-|. |. .-.|..|+.+|++.++...|+.|+.++...
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4588999998775432 2232 53 579999999999988888999999988754
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.28 E-value=0.029 Score=43.02 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=39.9
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
..+.-.|-||++--.+ |...||. +-.-+.|+.+|+.. ..+|++|++++..
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 3457799999887654 7888864 56889999999974 5689999999875
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.62 E-value=0.029 Score=41.71 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=37.4
Q ss_pred CCCeeeEeccCCCCCCcc--cCcccCCCCccccHHHHHHHHHhc---C---Cccccc--ccccc
Q 025381 58 KLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEK---G---DTTCEI--CREQY 111 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~--~PC~C~GslkyvH~~CL~~W~~~k---~---~~~CEi--C~~~y 111 (253)
+...|-||+++..+..+. .||. +..-+.|+++++..+ + ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 466899999886544443 4786 689999999999753 2 469999 99884
No 64
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=93.53 E-value=0.05 Score=41.50 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.+.-.|-||++--.+ |...||. -+-+-+.|+++|+.. ..+|++|++++...
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccC-CeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCChh
Confidence 456789999887654 7778865 146779999999975 45899999998753
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.21 E-value=0.043 Score=46.79 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
...-.|-||++--.+ |...||. +-.=+.|+.+|+...+. +||+|+.++...
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCChh
Confidence 457789999887654 7778864 57789999999987655 799999988753
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.97 E-value=0.075 Score=37.81 Aligned_cols=47 Identities=19% Similarity=0.525 Sum_probs=35.1
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCcc-ccHHHHHHHHHhcCCccccccccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
..+...|.||++... +....||. +. +-..|+++ ...|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 345678999998764 36778987 34 67788873 36899999988753
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.91 E-value=0.059 Score=38.51 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=33.7
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCcc-ccHHHHHHHHHhcCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
+...|.||++... ++...||. +. +...|+++. ..|++|++++..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 4568999998764 36678986 55 789998643 689999998875
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=87.82 E-value=0.077 Score=49.24 Aligned_cols=46 Identities=24% Similarity=0.640 Sum_probs=36.4
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCcc-ccHHHHHHHHHhcCCccccccccccccC
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.+...|.||++... ++...||. +. +...|+.+| ..|++|+.++...
T Consensus 293 ~~~~~C~IC~~~~~-~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEV-SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBC-CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCC-ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccCe
Confidence 34679999998764 36667987 56 889999998 5899999988743
No 69
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.07 E-value=0.25 Score=35.49 Aligned_cols=53 Identities=13% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCcccccccccc
Q 025381 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (253)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~~y 111 (253)
+..+.....|.||.+.+ .|+ -|. +=-+..|..||.-.+.+ ++.+.|+.|...-
T Consensus 6 ~~~~~~~~~C~vC~~~~---~ll-~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 6 QQNLAPGARCGVCGDGT---DVL-RCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTCCCTTTSCCT---TCE-ECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred ccCCCCCCCcCCCCCCC---eEE-ECC--CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34556667899997653 333 243 33479999999877765 5789999998653
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=83.52 E-value=0.38 Score=43.55 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=40.2
Q ss_pred CCCCCeeeEeccCCCCCCccc-CcccCCCCccccHHHHHHHHHhcCCccccc--cccccccC
Q 025381 56 PSKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEI--CREQYNPG 114 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEi--C~~~y~~~ 114 (253)
......|-||++-..+ |... .|. +-.=+.|+.+|+...+...|++ |++.+...
T Consensus 178 ~~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 4567789999876643 4432 554 6688999999998877889999 99988653
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=83.09 E-value=0.24 Score=36.03 Aligned_cols=44 Identities=23% Similarity=0.630 Sum_probs=33.1
Q ss_pred CCeeeEeccCCCCCCcccCcccCCCCcc-ccHHHHHHHHHhcCCccccccccccccC
Q 025381 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 59 ~~~CRIC~ee~~d~~L~~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
...|.||++... +....||. +. +=..|+.+| ..|++|++++...
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 458999988764 36678987 34 457898877 3999999988753
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=82.03 E-value=0.55 Score=32.73 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=33.0
Q ss_pred CeeeEeccCCCCCCccc-CcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 60 VECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 60 ~~CRIC~ee~~d~~L~~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
-.|.||++--.+ +.+. ||. .-.=+.|+++|+++.+ +|++++++...
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 357777666543 5555 433 5688999999998765 59999988764
No 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.43 E-value=1.6 Score=33.28 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=35.5
Q ss_pred CCCCCCCCeeeEeccCCCCCCccc--CcccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 025381 53 GSSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (253)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~~y~ 112 (253)
+..+.+...| ||..... +.|+. -|.|. ..+.|..|+. +.. +++..|+.|...-+
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CcCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 4455677888 9987653 34542 23353 2699999997 433 46889999976543
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.02 E-value=15 Score=28.27 Aligned_cols=54 Identities=24% Similarity=0.568 Sum_probs=38.4
Q ss_pred CCCCeeeEeccCC---CCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccccccc
Q 025381 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (253)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~ 113 (253)
.....|.||-++. .++.+..-|+=.+ --|=+.|++-=.+ .++..|+.|+.+|+-
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 3567999998874 3456666666222 2477889876553 477899999999984
No 75
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=63.40 E-value=1.3 Score=33.98 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=31.7
Q ss_pred CCCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCcccccc
Q 025381 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEIC 107 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC 107 (253)
++..+...|.||.+.++.++|+ -| .+=-+..|..||.-.... ++.+.|+-|
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcC
Confidence 4445677899998877544453 33 233478999999876542 344444433
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=61.04 E-value=1.5 Score=32.95 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=35.6
Q ss_pred CCCCCCeeeEeccCC-CCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 55 SPSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~-~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
...+...|.||...+ .+.+...-|. +=-..+|..|+.--..-++.+.|+.|...-.
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCccc
Confidence 345677899998775 2223333343 2235789999864333467889999976443
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.71 E-value=1.4 Score=31.85 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=33.9
Q ss_pred CCCCCCeeeEeccCC-CCCCcccCcccCCCCccccHHHHHHHHHhcCCcccccccc
Q 025381 55 SPSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~-~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~ 109 (253)
.......|.||.+.+ ++++...-|. +=-+.+|..|+.--..-+|.+.|+.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCcCCCCCcCCccCcC
Confidence 345567899998775 2223333343 2236899999864333467888998875
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.52 E-value=2.1 Score=30.93 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=33.9
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--CcccCCCCccccHHHHHHHHHh--cCCcccccccccc
Q 025381 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~~y 111 (253)
..+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++...|+.|...-
T Consensus 11 ~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 445667788 8977653 45543 22253 2699999997 433 4788999997543
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.11 E-value=2.3 Score=28.16 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=29.2
Q ss_pred eeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 025381 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (253)
Q Consensus 61 ~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~ 109 (253)
.|.||...++++.|+ -| .+=-+..|..||.-=+.+ ++...|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll-~C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LC--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-EC--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-EC--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888776544443 22 233478999998532322 46788888864
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=52.45 E-value=1.8 Score=30.88 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~~y~ 112 (253)
.+...|.||...++...|+. |.+=-.+.|..|+.--... .+...|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44567999977764334443 2333489999998654432 26788999986554
No 81
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=47.73 E-value=24 Score=23.54 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 025381 221 LLILRTIGILLPIYVMVKAFTAIQRRRHQQV 251 (253)
Q Consensus 221 ~~~lra~GillP~yi~~~~i~~~q~~r~q~~ 251 (253)
....-..| +|=+.|++-.+..+-|||+||+
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 33455667 4445555556667777877775
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=43.47 E-value=5.8 Score=27.45 Aligned_cols=48 Identities=17% Similarity=0.484 Sum_probs=31.9
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHH--hcCCccccccccc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~--~k~~~~CEiC~~~ 110 (253)
.....|.+|...+ .|+. |.+=-+..|..||.--+. .++...|+.|.++
T Consensus 9 ~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4566899998643 3322 233346899999886543 2578899999753
No 83
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=40.68 E-value=9.1 Score=29.78 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=36.3
Q ss_pred CCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccCc
Q 025381 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (253)
Q Consensus 57 ~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~y 115 (253)
-..-.|+.|+-++. .|+. |+ -+|.=..||..-+.. ...|+||+.+.....
T Consensus 26 ~G~~nCKsCWf~~k--~LV~-C~----dHYLCl~CLtlmL~~--SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVE-CN----NHYLCLNCLTLLLSV--SNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEE-CS----SCEEEHHHHHHTCSS--SSEETTTTEECCCCS
T ss_pred cCcccChhhccccC--Ceee-ec----chhhHHHHHHHHHhh--ccCCcccCCcCCcce
Confidence 44567999987763 4543 32 489999999887754 458999999887654
No 84
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=39.86 E-value=9.7 Score=26.89 Aligned_cols=35 Identities=37% Similarity=0.771 Sum_probs=21.1
Q ss_pred CCCCCeeeEeccCCCCCCcccCc--ccCCCCccccHHHHH
Q 025381 56 PSKLVECRICHEEDEDSNMEIPC--SCCGSLKYAHRKCVQ 93 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC--~C~GslkyvH~~CL~ 93 (253)
......|-+|..+..++..-.-| .| .++.|..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C---~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASC---QKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTT---CCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCc---cccCchhccC
Confidence 44566899998875444333344 35 3799999974
No 85
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=39.53 E-value=1.6 Score=30.45 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=30.1
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--CcccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 025381 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~ 109 (253)
..+++...| ||...+. +.|+. -|.|. ..+.|..|+. +.+ +++..|+.|..
T Consensus 5 ~d~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 5 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ----CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cCCCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 345567778 8977653 44542 23343 2689999998 443 46788888864
No 86
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=36.98 E-value=6 Score=32.18 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=33.7
Q ss_pred CCCCCeeeEeccCCC-CCCcccCcccCCCCccccHHHHHHHHHh---cCCcccccccccc
Q 025381 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQY 111 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiC~~~y 111 (253)
.++...| +|....+ ++.|+.=-.| ..+.|..|+.---.. .+...|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3466788 9987653 3455542235 489999998633222 4688999998754
No 87
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=34.91 E-value=13 Score=22.00 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=12.4
Q ss_pred CCcccCcccCCCCcccc
Q 025381 72 SNMEIPCSCCGSLKYAH 88 (253)
Q Consensus 72 ~~L~~PC~C~GslkyvH 88 (253)
+.--+||.|+|...|..
T Consensus 8 naachpc~c~~rp~yc~ 24 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYCG 24 (26)
T ss_dssp CSSCCTTTSTTCCGGGC
T ss_pred CccccccccCCCCCccC
Confidence 34568999998776643
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=33.74 E-value=3.3 Score=35.04 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=34.0
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCcccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~~y~~ 113 (253)
....|.+|..++ .+ .- |.|--+..|..||...+.. +|.+.|+.|...-++
T Consensus 6 ~~~~C~~C~~~g---~l-l~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DL-LC--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKP 57 (207)
T ss_dssp SCSSBTTTCCCE---EE-EE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSC
T ss_pred CCCCCCCCCCCC---ce-EE--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcccc
Confidence 345699998664 22 22 3444578999998665543 578999999876543
No 89
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.17 E-value=38 Score=24.23 Aligned_cols=53 Identities=30% Similarity=0.539 Sum_probs=33.9
Q ss_pred CCCCCCCeeeEeccCCCCCCcccCc---ccCCCCccccHHHHHHHHHhc-------CCcccccccccc
Q 025381 54 SSPSKLVECRICHEEDEDSNMEIPC---SCCGSLKYAHRKCVQRWCNEK-------GDTTCEICREQY 111 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~~PC---~C~GslkyvH~~CL~~W~~~k-------~~~~CEiC~~~y 111 (253)
..+.....| ||...++++.|+. | .|. .|.|..|+.-=-..+ ....|+.|+..-
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~-CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQ-CEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEE-CSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEE-ECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 445677888 8988755555543 3 354 499999975322211 367899887643
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.24 E-value=5.2 Score=27.68 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=33.6
Q ss_pred CCCCCeeeEeccCCC--CCCcccCcccCCCCccccHHHHHHHHH-----hcCCccccccccc
Q 025381 56 PSKLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN-----EKGDTTCEICREQ 110 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~--d~~L~~PC~C~GslkyvH~~CL~~W~~-----~k~~~~CEiC~~~ 110 (253)
+.+...|.+|...+. ++.|+ -|. +=-+.+|..|+.--+. .++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-ICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-ECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456678999987642 23433 232 3346889999875432 4578899998754
No 91
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.52 E-value=3 Score=29.32 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=29.6
Q ss_pred CCCCCCeeeEeccCCCCCCccc--CcccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 025381 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (253)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~ 109 (253)
.+++...| ||...+. +.|+. -|.|+ ..+.|..|+. +.+ ++...|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 45566778 8877543 34542 23353 2799999987 332 46778888864
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.37 E-value=4.2 Score=27.54 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=28.7
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~ 109 (253)
......|.+|...+ .|+ -| .+=-+..|..||..-+.. ++...|+.|..
T Consensus 6 ~~~~~~C~vC~~~g---~ll-~C--d~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLL-MC--DTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS---CCE-EC--SSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC---eEE-Ec--CCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34566799998653 332 22 233478898887643322 45677777754
No 93
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=27.77 E-value=30 Score=28.22 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHH---------hcCCccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN---------EKGDTTCEICR 108 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~---------~k~~~~CEiC~ 108 (253)
...+..|++|.++++ |+ -| .+=.+-.|..||..=+. ..+++.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~---Ll-cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LI-CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS---EE-EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc---EE-eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 345678999987763 22 22 22247899999997652 46899999996
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.44 E-value=11 Score=28.46 Aligned_cols=52 Identities=25% Similarity=0.451 Sum_probs=32.5
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHH-hcCCccccccc
Q 025381 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICR 108 (253)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~-~k~~~~CEiC~ 108 (253)
|+...+...| ||....+++.|+.==.| -.+.|..|+.-=.. ..+...|+.|+
T Consensus 22 g~~~~d~vrC-iC~~~~~~~~mi~Cd~C---~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 22 GSYGTDVTRC-ICGFTHDDGYMICCDKC---SVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCCCCCBCCC-TTSCCSCSSCEEEBTTT---CBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCCCCCEEe-ECCCccCCCcEEEcCCC---CCcCcCcCCCCCccCCCCCEECCCCc
Confidence 3344556778 89776655666542234 47999999853111 12468999996
No 95
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=27.27 E-value=20 Score=18.37 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|++|++.|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999998874
No 96
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.47 E-value=5.1 Score=30.36 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCCCCCeeeEeccCCCCCCcc--cCcccCCCCccccHHHHHHHHHhcCCccccc-cccc
Q 025381 54 SSPSKLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEI-CREQ 110 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~--~PC~C~GslkyvH~~CL~~W~~~k~~~~CEi-C~~~ 110 (253)
+.+.+...| ||...+. +.|+ --|.|. ..+.|..|+.-=-..++...|+. |...
T Consensus 21 ~~~~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVgl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVGLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp ---CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSSCSSCTTSCCCSSHHHHHH
T ss_pred CCCCCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCCCCcCCCCCccCChhhcch
Confidence 344567788 9976543 3454 334454 27999999862111246889999 8743
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=26.39 E-value=26 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.463 Sum_probs=21.2
Q ss_pred CCCeeeEeccCCCC------CCcccCcccCCCCccccHHHHHH
Q 025381 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQR 94 (253)
Q Consensus 58 ~~~~CRIC~ee~~d------~~L~~PC~C~GslkyvH~~CL~~ 94 (253)
....|.+|+..++. ++|+. | .+=-+..|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~-C--~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS-C--ADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE-C--TTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE-h--hhcCCCCCCchhcC
Confidence 35679999876422 23442 3 33347899999963
No 98
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.56 E-value=22 Score=18.39 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|++|++.|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998874
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=25.04 E-value=7.8 Score=31.97 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCccccccccccc
Q 025381 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (253)
Q Consensus 58 ~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~~y~ 112 (253)
+...|.+|..+++ + .-| .+--+..|..|+..-+.. +|.+.|+.|...=+
T Consensus 3 ~~~~C~~C~~~g~---l-l~C--d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE---L-LCC--EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS---C-EEC--SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe---e-eec--CCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 3457999986642 2 233 333578999998665543 57899999987544
No 100
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=24.82 E-value=14 Score=28.72 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCCCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHHh--cCCccccccc
Q 025381 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICR 108 (253)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~ 108 (253)
..+.....|.+|.+.+ . ..-|..++-.+..|..||. +.+ +|++.|+-|.
T Consensus 10 ~~~~~~~~C~~C~~~G---~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGG---E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCCS---E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCCC---c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 3445667899998443 2 3446522334799999997 443 4566666443
No 101
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.50 E-value=9.6 Score=36.82 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=34.3
Q ss_pred CCCCeeeEeccCCC-CCCcccCcccCCCCccccHHHHHHHHHhc---CCccccccccccccC
Q 025381 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK---GDTTCEICREQYNPG 114 (253)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~L~~PC~C~GslkyvH~~CL~~W~~~k---~~~~CEiC~~~y~~~ 114 (253)
.+...| ||....+ ++.|+.=-.|. .+.|..|+.-=-... +...|+.|.....+.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 445566 8877643 45666533454 799999985322221 468999999765543
No 102
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.17 E-value=29 Score=24.58 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=33.1
Q ss_pred CCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHH-------hcCCcccccccccccc
Q 025381 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-------EKGDTTCEICREQYNP 113 (253)
Q Consensus 59 ~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~-------~k~~~~CEiC~~~y~~ 113 (253)
...| ||....++..|+.==.| ..|.|..|+.-=.. ......|+.|.....+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C---~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRC---EEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSS---CCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCCCEEEeCCC---CCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 5677 88776654455542235 37999999853221 2367899999876554
No 103
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.98 E-value=16 Score=18.80 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.3
Q ss_pred ccccccccccccC
Q 025381 102 TTCEICREQYNPG 114 (253)
Q Consensus 102 ~~CEiC~~~y~~~ 114 (253)
-.|+.|++.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4699999998753
No 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.09 E-value=6 Score=29.71 Aligned_cols=52 Identities=23% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHHH--hcCCccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~~--~k~~~~CEiC~~~ 110 (253)
..+...|.||...++++.| .-|. +=-+..|..||.-=+. -++.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~l-l~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKL-LFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGC-EECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCE-EEcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456679999877643333 2332 2236899999863332 2467889999754
No 105
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.97 E-value=14 Score=26.46 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCCCCeeeEeccCCCCCCccc--CcccCCCCccccHHHHHHHHHhcCCccccccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~ 112 (253)
+++...| ||...+. +.|+. -|.|. ..+.|..|+.-=-..++...|+.|....+
T Consensus 3 ~~~~~yC-~C~~~~~-g~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSY-GEMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CSCCCCS-TTSCCCC-SSEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCeEE-EcCCCCC-CCEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCcccc
Confidence 4556677 4766543 34542 33343 37999999872112246788999986553
No 106
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.78 E-value=21 Score=18.50 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|+.|++.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999998874
No 107
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.48 E-value=23 Score=18.21 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|+.|++.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 479999988864
No 108
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.04 E-value=4.6 Score=28.01 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=29.2
Q ss_pred CCCCCeeeEeccCCCCCCccc--CcccCCCCccccHHHHHHHHHh--cCCcccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiC~~ 109 (253)
+++...| ||...+. +.|+. -|.|. ..+.|..|+. +.+ +++..|+.|..
T Consensus 6 ~~e~~yC-~C~~~~~-g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSY-GEMIGCDNPDCP--IEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCC-CCeeEeeCCCCC--CCCEecccCC--cccCCCCCEECcCccC
Confidence 4456677 8877543 34542 23343 1699999987 433 36788888864
No 109
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.72 E-value=7.7 Score=28.81 Aligned_cols=53 Identities=15% Similarity=0.343 Sum_probs=36.1
Q ss_pred CCCeeeEeccCCCC--CCcccCcccCCCCccccHHHHHHHHH------hcCCcccccccccccc
Q 025381 58 KLVECRICHEEDED--SNMEIPCSCCGSLKYAHRKCVQRWCN------EKGDTTCEICREQYNP 113 (253)
Q Consensus 58 ~~~~CRIC~ee~~d--~~L~~PC~C~GslkyvH~~CL~~W~~------~k~~~~CEiC~~~y~~ 113 (253)
....|.+|...+.+ +.|+. |. +=-+..|..|+.--+. .++.+.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~-CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE-CQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE-CS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEE-CC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 46689999887542 34433 32 2246889999876553 3578999999876653
No 110
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=22.22 E-value=34 Score=27.44 Aligned_cols=47 Identities=26% Similarity=0.430 Sum_probs=32.3
Q ss_pred CCCCCeeeEeccCCCCCCcccCcccCCCCccccHHHHHHHH------H---hcCCccccccc
Q 025381 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWC------N---EKGDTTCEICR 108 (253)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~L~~PC~C~GslkyvH~~CL~~W~------~---~k~~~~CEiC~ 108 (253)
...+..|++|.++++ |+ - |.+--+-.|.+||.+=+ + .++++.|..|.
T Consensus 54 Dg~~~~C~vC~dGG~---Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN---LI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCSE---EE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCCe---eE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 445567999987642 22 2 23345889999999752 2 46789999994
No 111
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.33 E-value=25 Score=18.20 Aligned_cols=12 Identities=17% Similarity=0.869 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|++|++.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 479999998874
No 112
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=21.28 E-value=24 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=23.5
Q ss_pred CcccCcccCCCCccccHHHHHHHHHhcCCccccccccccccC
Q 025381 73 NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (253)
Q Consensus 73 ~L~~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC~~~y~~~ 114 (253)
.|.-| .|+|.+.|.- .++...|+-|+..|...
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 45566 6888887642 35778999999999865
No 113
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.85 E-value=23 Score=18.54 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=9.8
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|++|++.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 479999998874
No 114
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.70 E-value=25 Score=26.74 Aligned_cols=34 Identities=21% Similarity=0.545 Sum_probs=20.5
Q ss_pred CccccccccccccCccCCCC---ccccccccCC--Ccee
Q 025381 101 DTTCEICREQYNPGYTAPPP---LFRYGGNFRA--NWEI 134 (253)
Q Consensus 101 ~~~CEiC~~~y~~~yt~p~~---~~~~~~~~~~--~W~i 134 (253)
.-+|+.|+.+|--.|-+..- .+...++|.| .|+-
T Consensus 51 ~FkCP~CgEEFyG~~Lp~~EaeKVFELLNdFkGsIDwen 89 (95)
T 2k5c_A 51 VFKCPVCGEEFYGKTLPRREAEKVFELLNDFKGGIDWEN 89 (95)
T ss_dssp EEECTTTCCEEETTSSCTTTHHHHHHHHHSCSSSCBTTT
T ss_pred hhcCCCccHHHhcccCChHHHHHHHHHHHHccCcccccc
Confidence 46899999999876533221 3333335555 5653
No 115
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.62 E-value=30 Score=17.64 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 025381 102 TTCEICREQYNP 113 (253)
Q Consensus 102 ~~CEiC~~~y~~ 113 (253)
..|+.|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 479999998874
No 116
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=20.39 E-value=1e+02 Score=19.93 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=24.0
Q ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 025381 212 GEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQR 245 (253)
Q Consensus 212 ~~~~~~~~t~~~lra~GillP~yi~~~~i~~~q~ 245 (253)
++|+-+.+--++.=..|.++|...|+-..--||+
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe~ 36 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 4555444445567789999999999887766664
No 117
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.10 E-value=28 Score=18.03 Aligned_cols=13 Identities=15% Similarity=0.575 Sum_probs=10.1
Q ss_pred ccccccccccccC
Q 025381 102 TTCEICREQYNPG 114 (253)
Q Consensus 102 ~~CEiC~~~y~~~ 114 (253)
..|+.|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 4699999988743
Done!