BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025382
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 84 YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 139
YRG+RQRPWGK+AAEIRDP K G RVWLGTF T R+RG +A LNF
Sbjct: 6 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 84 YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 139
YRG+RQRPWGK+AAEIRDP K G RVWLGTF T R+RG +A LNF
Sbjct: 3 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59
>pdb|1AKM|A Chain A, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|B Chain B, Ornithine Transcarbamylase From Escherichia Coli
pdb|1AKM|C Chain C, Ornithine Transcarbamylase From Escherichia Coli
pdb|1DUV|G Chain G, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|H Chain H, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
pdb|1DUV|I Chain I, Crystal Structure Of E. Coli Ornithine Transcarbamoylase
Complexed With Ndelta-L-Ornithine-Diaminophosphinyl-N-
Sulphonic Acid (Psorn)
Length = 333
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 74 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFN 114
K T RV +Y GI+ R +G+ E Y V VW G N
Sbjct: 90 KDTARVLGRMYDGIQYRGYGQEIVETLAEYASVPVWNGLTN 130
>pdb|3UPD|A Chain A, 2.9 Angstrom Crystal Structure Of Ornithine
Carbamoyltransferase (Argf) From Vibrio Vulnificus
pdb|4H31|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Vibrio Vulnificus In Complex
With Carbamoyl Phosphate And L-Norvaline
pdb|4H31|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Vibrio Vulnificus In Complex
With Carbamoyl Phosphate And L-Norvaline
pdb|4H31|C Chain C, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Vibrio Vulnificus In Complex
With Carbamoyl Phosphate And L-Norvaline
Length = 358
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 74 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLG 111
K T RV +Y GI+ R +G+ E + GV VW G
Sbjct: 116 KDTARVLGRMYDGIQYRGFGQAIVEELGAFAGVPVWNG 153
>pdb|2OTC|A Chain A, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|B Chain B, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|C Chain C, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|D Chain D, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|E Chain E, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|F Chain F, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|G Chain G, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|H Chain H, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
pdb|2OTC|I Chain I, Ornithine Transcarbamoylase Complexed With N-
(Phosphonacetyl)-L-Ornithine
Length = 333
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 74 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFN 114
K T RV +Y GI+ R +G+ E Y V VW G N
Sbjct: 90 KDTARVLGRMYDGIQYRGYGQEIVETLAEYARVPVWNGLTN 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,284,028
Number of Sequences: 62578
Number of extensions: 275242
Number of successful extensions: 619
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 7
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)