Query 025382
Match_columns 253
No_of_seqs 255 out of 1096
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 2.7E-24 9.3E-29 156.9 7.0 61 83-143 2-63 (63)
2 1u3e_M HNH homing endonuclease 94.2 0.0019 6.4E-08 53.9 -4.0 62 59-124 84-146 (174)
3 3igm_B PF14_0633 protein; AP2 91.4 0.19 6.4E-06 37.8 3.9 28 79-108 3-31 (77)
4 1z1b_A Integrase; protein-DNA 84.1 1.3 4.4E-05 38.3 5.2 42 85-130 14-55 (356)
5 3jtz_A Integrase; four strande 49.6 32 0.0011 25.4 5.4 43 88-130 29-75 (88)
6 2pka_A Kallikrein A; serine pr 44.9 3.1 0.00011 29.1 -0.9 10 1-10 25-34 (80)
7 1b69_A Protein (integrase); in 36.0 39 0.0013 24.6 3.8 28 81-109 9-36 (69)
8 3ju0_A Phage integrase; four s 31.9 77 0.0026 24.3 5.2 43 88-130 29-75 (108)
9 1x60_A Sporulation-specific N- 31.8 37 0.0012 23.7 3.1 23 106-128 46-68 (79)
10 1yph_C Chymotrypsin A, chain B 30.4 7.6 0.00026 29.5 -0.9 10 1-10 26-35 (131)
11 2ftc_I Mitochondrial ribosomal 29.9 66 0.0023 25.3 4.6 36 95-132 80-115 (118)
12 1uta_A FTSN, MSGA, cell divisi 28.5 50 0.0017 23.3 3.4 23 106-128 46-68 (81)
13 2vnt_A Urokinase-type plasmino 20.4 16 0.00053 30.7 -0.9 10 1-10 53-62 (276)
14 1x4e_A RNA binding motif, sing 20.0 62 0.0021 22.0 2.4 33 109-141 50-83 (85)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=2.7e-24 Score=156.89 Aligned_cols=61 Identities=69% Similarity=1.140 Sum_probs=57.5
Q ss_pred ceeeEEECCCCeEEEEEecCC-CCeeeeccCcCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 025382 83 VYRGIRQRPWGKWAAEIRDPY-KGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPP 143 (253)
Q Consensus 83 gYrGVr~r~~GKW~A~I~~~~-~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~lNFp~~~ 143 (253)
+||||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 699999888999999999986 4899999999999999999999999999999999999863
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.17 E-value=0.0019 Score=53.86 Aligned_cols=62 Identities=6% Similarity=-0.057 Sum_probs=40.2
Q ss_pred hhhhhhHHHH-HHHhhhhccccCCCceeeEEECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHH
Q 025382 59 AEDSSNKAAR-TEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYD 124 (253)
Q Consensus 59 ~~~~~~~~~~-~~~~~~~~r~~~~SgYrGVr~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD 124 (253)
.+++-++.+. +|..++.....+ +.++||...+.++|.+.|.. + +.++||.|.|.+|||++|.
T Consensus 84 ~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 84 LSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred CHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 3445555543 444444333322 22567743334679999998 6 6788999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.41 E-value=0.19 Score=37.83 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCCCceeeEE-ECCCCeEEEEEecCCCCeee
Q 025382 79 VRKNVYRGIR-QRPWGKWAAEIRDPYKGVRV 108 (253)
Q Consensus 79 ~~~SgYrGVr-~r~~GKW~A~I~~~~~gkri 108 (253)
..+|+|+||+ ..+.+.|.|.-.. +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 4689999996 5557999999998 77764
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=84.06 E-value=1.3 Score=38.34 Aligned_cols=42 Identities=17% Similarity=0.085 Sum_probs=32.6
Q ss_pred eeEEECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHHHHHHHh
Q 025382 85 RGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRI 130 (253)
Q Consensus 85 rGVr~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD~AA~~l 130 (253)
.||++++.|.|+.+... +||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 46877788999988766 889999996 8888887766655544
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=49.59 E-value=32 Score=25.42 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=29.9
Q ss_pred EECCC--CeEEEEEecCCCCeeeeccCcC--CHHHHHHHHHHHHHHh
Q 025382 88 RQRPW--GKWAAEIRDPYKGVRVWLGTFN--TAEEAARAYDEAAKRI 130 (253)
Q Consensus 88 r~r~~--GKW~A~I~~~~~gkri~LGtF~--T~EEAArAYD~AA~~l 130 (253)
+-.++ ..|+-+-+...+.+++-||.|. |..+|....+++...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 44444 4598888874344568899996 6888887777666655
No 6
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A
Probab=44.91 E-value=3.1 Score=29.11 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=8.3
Q ss_pred CCCcccccCC
Q 025382 1 MCGGALIADY 10 (253)
Q Consensus 1 mcggaii~d~ 10 (253)
+|||+||++-
T Consensus 25 ~CgGslIs~~ 34 (80)
T 2pka_A 25 QCGGVLVNPK 34 (80)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEcCC
Confidence 4999999964
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=35.96 E-value=39 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCceeeEEECCCCeEEEEEecCCCCeeee
Q 025382 81 KNVYRGIRQRPWGKWAAEIRDPYKGVRVW 109 (253)
Q Consensus 81 ~SgYrGVr~r~~GKW~A~I~~~~~gkri~ 109 (253)
.--+.|+.+++.|+|+++..+. .|++.+
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~-~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS-FGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT-TSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEcC-CCCEEE
Confidence 4567899999999999999984 355543
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=31.93 E-value=77 Score=24.29 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=29.0
Q ss_pred EECCCC--eEEEEEecCCCCeeeeccCcC--CHHHHHHHHHHHHHHh
Q 025382 88 RQRPWG--KWAAEIRDPYKGVRVWLGTFN--TAEEAARAYDEAAKRI 130 (253)
Q Consensus 88 r~r~~G--KW~A~I~~~~~gkri~LGtF~--T~EEAArAYD~AA~~l 130 (253)
+-.++| .|+-+-+...+.+++-||.|. |..+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 344443 598888873344558899996 5788877776665555
No 9
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.76 E-value=37 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=18.6
Q ss_pred eeeeccCcCCHHHHHHHHHHHHH
Q 025382 106 VRVWLGTFNTAEEAARAYDEAAK 128 (253)
Q Consensus 106 kri~LGtF~T~EEAArAYD~AA~ 128 (253)
-+|++|-|.+.++|..+.++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 37888999999999988766554
No 10
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Probab=30.39 E-value=7.6 Score=29.53 Aligned_cols=10 Identities=50% Similarity=1.212 Sum_probs=8.2
Q ss_pred CCCcccccCC
Q 025382 1 MCGGALIADY 10 (253)
Q Consensus 1 mcggaii~d~ 10 (253)
+|||+||++-
T Consensus 26 ~CgGsLIs~~ 35 (131)
T 1yph_C 26 FCGGSLINEN 35 (131)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEeeCC
Confidence 4999999953
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=29.95 E-value=66 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=30.3
Q ss_pred EEEEEecCCCCeeeeccCcCCHHHHHHHHHHHHHHhcC
Q 025382 95 WAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRG 132 (253)
Q Consensus 95 W~A~I~~~~~gkri~LGtF~T~EEAArAYD~AA~~l~G 132 (253)
|+|+|.. +..-+-++...+++.|..|...|+.+|-+
T Consensus 80 wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 9999998 77777777778899999999999988743
No 12
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.54 E-value=50 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.8
Q ss_pred eeeeccCcCCHHHHHHHHHHHHH
Q 025382 106 VRVWLGTFNTAEEAARAYDEAAK 128 (253)
Q Consensus 106 kri~LGtF~T~EEAArAYD~AA~ 128 (253)
-||.+|-|.+.++|..+.++...
T Consensus 46 yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 46 NRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47889999999999988766554
No 13
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}
Probab=20.42 E-value=16 Score=30.73 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=8.3
Q ss_pred CCCcccccCC
Q 025382 1 MCGGALIADY 10 (253)
Q Consensus 1 mcggaii~d~ 10 (253)
+|||+||++-
T Consensus 53 ~CgGsLIs~~ 62 (276)
T 2vnt_A 53 VCGGSLMSPC 62 (276)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEeeCC
Confidence 4999999954
No 14
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.02 E-value=62 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=22.3
Q ss_pred eccCcCCHHHHHHHHHH-HHHHhcCCCCCCCCCC
Q 025382 109 WLGTFNTAEEAARAYDE-AAKRIRGDKAKLNFAQ 141 (253)
Q Consensus 109 ~LGtF~T~EEAArAYD~-AA~~l~G~~A~lNFp~ 141 (253)
-.-.|.+.++|.+|... --..+.|..++..+|.
T Consensus 50 afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 50 GFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 33467999999999874 3345667666665553
Done!