Query 025383
Match_columns 253
No_of_seqs 163 out of 414
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13716 CRAL_TRIO_2: Divergen 100.0 5.5E-31 1.2E-35 215.9 10.5 144 65-211 3-149 (149)
2 KOG4406 CDC42 Rho GTPase-activ 100.0 1.4E-30 3E-35 241.2 12.9 160 53-215 67-231 (467)
3 KOG1470 Phosphatidylinositol t 99.9 5.9E-26 1.3E-30 207.1 8.1 173 14-199 55-235 (324)
4 smart00516 SEC14 Domain in hom 99.8 9.5E-21 2.1E-25 154.8 12.1 129 70-203 14-151 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.8 1.2E-19 2.5E-24 146.1 11.8 135 64-200 9-151 (157)
6 PF00650 CRAL_TRIO: CRAL/TRIO 99.7 4.6E-18 9.9E-23 139.1 5.3 139 59-199 2-152 (159)
7 KOG1471 Phosphatidylinositol t 99.6 9.7E-16 2.1E-20 140.1 6.3 176 14-199 51-249 (317)
8 KOG2633 Hismacro and SEC14 dom 96.0 3E-05 6.5E-10 67.1 -10.8 176 54-232 13-193 (200)
9 KOG1826 Ras GTPase activating 94.7 0.015 3.2E-07 63.7 1.8 159 51-213 1549-1709(2724)
10 PF03765 CRAL_TRIO_N: CRAL/TRI 61.3 0.28 6.2E-06 33.3 -4.9 18 14-31 37-54 (55)
11 PF03641 Lysine_decarbox: Poss 45.1 38 0.00081 27.1 4.3 64 131-194 64-133 (133)
12 PF09949 DUF2183: Uncharacteri 44.7 53 0.0012 25.3 4.8 49 96-155 50-98 (100)
13 PF03721 UDPG_MGDP_dh_N: UDP-g 44.6 4.7 0.0001 34.3 -1.2 126 60-190 19-154 (185)
14 PF07872 DUF1659: Protein of u 40.3 17 0.00037 24.1 1.3 22 63-84 8-29 (47)
15 PF06057 VirJ: Bacterial virul 37.7 1E+02 0.0022 26.7 6.0 77 73-159 27-107 (192)
16 PF11385 DUF3189: Protein of u 37.2 70 0.0015 26.5 4.7 52 61-117 47-98 (148)
17 PF13986 DUF4224: Domain of un 34.4 39 0.00084 22.4 2.3 25 54-80 18-42 (47)
18 PF10928 DUF2810: Protein of u 32.1 26 0.00056 23.9 1.1 18 143-160 20-37 (54)
19 PF12496 BNIP2: Bcl2-/adenovir 30.6 14 0.00031 29.9 -0.4 33 28-62 78-110 (127)
20 PF02350 Epimerase_2: UDP-N-ac 23.6 2.5E+02 0.0053 26.1 6.5 71 109-188 178-248 (346)
21 COG4647 AcxC Acetone carboxyla 21.8 36 0.00078 27.9 0.4 15 233-247 73-87 (165)
No 1
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.97 E-value=5.5e-31 Score=215.88 Aligned_cols=144 Identities=28% Similarity=0.481 Sum_probs=112.3
Q ss_pred CeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHH
Q 025383 65 FFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSR 144 (253)
Q Consensus 65 iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ 144 (253)
+++.+|+|++||||+++.++++ ....|++.++.|++.++.+.+.+++|+||+|++|.+ ..|.|+++|++++++.+|..
T Consensus 3 ~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~-~~~~~~~~~l~~~~~~l~~~ 80 (149)
T PF13716_consen 3 FFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFS-RSSEPSLSWLKQLYKLLPRK 80 (149)
T ss_dssp E-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT---GGG---HHHHHHTTTSS-HH
T ss_pred EEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCc-cccCCchHHHHHHHHHHHHH
Confidence 4578999999999999999999 444699999999999995578899999999999986 48899999999999999999
Q ss_pred HHhccceEEEEcCChHHHHHHHhhccccccccc-cCeEEEeCChhhHHhccCCCCC--CCChhHHhhhhh
Q 025383 145 IKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGL-YWKIKYVSRLQYLWNDIKKGEI--EIPEFVQNHDNV 211 (253)
Q Consensus 145 ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~-~~KI~fV~~l~eL~~~I~~dqL--~iP~~V~~~D~~ 211 (253)
+++||+++|||||++|+|.+++.+.+++++.|+ ++||+|++++++|.++|+++|| .+| .|++||.+
T Consensus 81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~ 149 (149)
T PF13716_consen 81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE 149 (149)
T ss_dssp HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence 999999999999999999999778899999999 9999999999999999999999 999 99999964
No 2
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=1.4e-30 Score=241.23 Aligned_cols=160 Identities=24% Similarity=0.437 Sum_probs=147.0
Q ss_pred CCcchhhhhhc--CCeEeecc--CCCCCeEEEEEeecCCC-CCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCC
Q 025383 53 PDEDFSDLDSL--QFFCLQGS--DKSGNRIFRLVGKYFPA-PVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDN 127 (253)
Q Consensus 53 ~~e~~~~l~~~--~iiy~~G~--Dk~GRPVvvi~~~~~p~-~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n 127 (253)
.+..|.++.++ +++.+.|. |++||+|+++.+|++|+ +++|.-+++.|+++++| .+++++|++||||.|+. ++|
T Consensus 67 ~ed~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id-~~Ve~DYt~vYfh~gl~-s~n 144 (467)
T KOG4406|consen 67 KEDPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTID-KYVENDYTLVYFHHGLP-SDN 144 (467)
T ss_pred ccccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHH-HHHhccceeeehhcCCc-ccc
Confidence 35668899888 88777665 99999999999999995 56777779999999997 78888999999999986 699
Q ss_pred CChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCChhHHh
Q 025383 128 YPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQN 207 (253)
Q Consensus 128 ~p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~V~~ 207 (253)
.|+++|+.++|..++++|+||||++|+|||+||+|+ +|.+++||||.||.+||+|+++++||.++|..++|.+|+.|++
T Consensus 145 kp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikv-i~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~ 223 (467)
T KOG4406|consen 145 KPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKV-IWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVLK 223 (467)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHH-HHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhhh
Confidence 999999999999999999999999999999999998 4578899999999999999999999999999999999999999
Q ss_pred hhhhhcCC
Q 025383 208 HDNVLEHR 215 (253)
Q Consensus 208 ~D~~l~~~ 215 (253)
||+.+...
T Consensus 224 ~D~~~~s~ 231 (467)
T KOG4406|consen 224 HDDKLLSK 231 (467)
T ss_pred hhhccccc
Confidence 99998754
No 3
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.92 E-value=5.9e-26 Score=207.12 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=149.9
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--c-CCCCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCC
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--Y-LSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPV 90 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~-is~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~ 90 (253)
+|+||..+|+||++|+... ..||..+. . |...| +..-.+.|..|++|.|+.||||++++++.-..+.
T Consensus 55 fLrAr~wnv~kA~kml~~t---------L~WR~~~~~~~~~~~~E-v~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~ 124 (324)
T KOG1470|consen 55 FLRARKWNVKKASKMLSNT---------LKWRRSFGPEEVIEADE-VAAELETGKAYILGHDKDGRPVLYLRPRPHRQNT 124 (324)
T ss_pred HHHHcCCcHHHHHHHHHHH---------hHHHHhcCCccccCHHH-HHHHhhcCcEEEecccCCCCeEEEEecCCCCCCC
Confidence 6899999999999999655 89998773 1 32233 6666678889999999999999999999444445
Q ss_pred CCHHHHHHHHHHHhhhhC-----CCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHH
Q 025383 91 VGGERLKKYIFHKICSEL-----PDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAF 165 (253)
Q Consensus 91 ~d~e~ll~yvi~~Ld~~~-----~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~ 165 (253)
.+.+.+.++++++||..+ +++.++++++.+|++. .|. +++.++.+..+|+.+||+||+.++|+||+|++.. +
T Consensus 125 ~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~-sN~-d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~-~ 201 (324)
T KOG1470|consen 125 KTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSM-SNP-DIKFLKELLHILQDHYPERLGKALLVNAPWIFQP-F 201 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcc-cCC-CcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHH-H
Confidence 788999999999998655 6788999999999985 565 5999999999999999999999999999988887 5
Q ss_pred HhhccccccccccCeEEEeCChhhHHhccCCCCC
Q 025383 166 ATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEI 199 (253)
Q Consensus 166 ~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL 199 (253)
|++++|||++++..||+|+.+..+|.++|+++++
T Consensus 202 wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l 235 (324)
T KOG1470|consen 202 WKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQL 235 (324)
T ss_pred HHHhhhccChhhhceeEEecChhHHHhhCCcccc
Confidence 6899999999999999999999999999999995
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.85 E-value=9.5e-21 Score=154.84 Aligned_cols=129 Identities=24% Similarity=0.357 Sum_probs=114.0
Q ss_pred ccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCC-------CCCEEEEEEcCCccccCCCChHHHHHHHHHHch
Q 025383 70 GSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELP-------DGPFCIVYMHTCVQKEDNYPGFTILRWIYEELP 142 (253)
Q Consensus 70 G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~-------~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~ 142 (253)
|.|++||||+++.++.++.+..+.++++++++..+|..+. .+.+++|++.+|++. .+ +++++++++++.++
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~-~~-~~~~~lk~~~~~~~ 91 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSM-SN-PDLSVLRKILKILQ 91 (158)
T ss_pred CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCc-cc-ccHHHHHHHHHHHH
Confidence 7999999999999999887778999999999999874332 246899999999874 34 67999999999999
Q ss_pred HHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCCCCCh
Q 025383 143 SRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEIEIPE 203 (253)
Q Consensus 143 ~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL~iP~ 203 (253)
..||+||+++|||||++++++++ +++++|+++++++||+++++ .++|.++|++++ ||.
T Consensus 92 ~~yp~~l~~i~ivn~p~~~~~~~-~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~--lP~ 151 (158)
T smart00516 92 DHYPERLGKVLIINPPWFFRVLW-KIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQ--LPE 151 (158)
T ss_pred HHhHHHhCeEEEECCCHHHHHHH-HHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhh--CcH
Confidence 99999999999999999999866 68899999999999999987 899999998875 665
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.82 E-value=1.2e-19 Score=146.08 Aligned_cols=135 Identities=20% Similarity=0.294 Sum_probs=112.2
Q ss_pred CCeEeeccCCCCCeEEEEEeecC-CCCCCCHHHHHHHHHHHhhhhCC-----CCCEEEEEEcCCccccCCC-ChHHHHHH
Q 025383 64 QFFCLQGSDKSGNRIFRLVGKYF-PAPVVGGERLKKYIFHKICSELP-----DGPFCIVYMHTCVQKEDNY-PGFTILRW 136 (253)
Q Consensus 64 ~iiy~~G~Dk~GRPVvvi~~~~~-p~~~~d~e~ll~yvi~~Ld~~~~-----~~~f~iVy~~tg~s~~~n~-p~~~~l~~ 136 (253)
++.+..|.|++||||+++..+.. +....+.++++++++..+|..+. .+.+++|+|.+|++. .+. +...++++
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~-~~~~~~~~~~k~ 87 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSL-SHLLPDPSLLKK 87 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCCh-hccchhHHHHHH
Confidence 45455667999999999999943 33445668899999988874331 147899999999874 443 36889999
Q ss_pred HHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCC-hhhHHhccCCCCCC
Q 025383 137 IYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR-LQYLWNDIKKGEIE 200 (253)
Q Consensus 137 ~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~-l~eL~~~I~~dqL~ 200 (253)
+++.++..||+||+++|||||++++++++ +++++|+++++++||+++++ .++|.++|++++|.
T Consensus 88 ~~~~~~~~yp~~l~~v~ivn~p~~~~~~~-~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp 151 (157)
T cd00170 88 ILKILQDNYPERLKAVYIINPPWFFKVLW-KIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLP 151 (157)
T ss_pred HHHHHHHhChHhhCeEEEECCCHhHHHHH-HHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCc
Confidence 99999999999999999999999999966 68899999999999999998 99999999998753
No 6
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.72 E-value=4.6e-18 Score=139.08 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=105.8
Q ss_pred hhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhC-------CCCCEEEEEEcCCccccCCCCh-
Q 025383 59 DLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSEL-------PDGPFCIVYMHTCVQKEDNYPG- 130 (253)
Q Consensus 59 ~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~-------~~~~f~iVy~~tg~s~~~n~p~- 130 (253)
++.+.++.+..|+|++||||+++..+++.......+++.++++..+|..+ ..+.+++|+|.+|++. .+.+.
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~-~~~~~~ 80 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSL-SNFDWW 80 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--H-HHHHCH
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceE-eccccc
Confidence 46778899999999999999999999887666677888888888887433 1245899999999873 44332
Q ss_pred -HHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCCh---hhHHhccCCCCC
Q 025383 131 -FTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRL---QYLWNDIKKGEI 199 (253)
Q Consensus 131 -~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l---~eL~~~I~~dqL 199 (253)
.+.++.+.+.++..||++|+.+||+|+++++++++ ++++||+++++.+||+++++. ++|.++|+.++|
T Consensus 81 ~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~-~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 81 PISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLW-KIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp HHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHH-HHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred hhhhhhhhhhhhcccCCccceeEEEEecChhhhhhH-hHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 78999999999999999999999999999999855 688999999999999999543 479999998654
No 7
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.60 E-value=9.7e-16 Score=140.08 Aligned_cols=176 Identities=18% Similarity=0.149 Sum_probs=128.4
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCC-cchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCC
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPD-EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPV 90 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~-e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~ 90 (253)
+|+|+++++++|..|+.++ .+|+.-.. .|... +...++.+......+|.|+.|+||++-.......+.
T Consensus 51 fLra~~f~ve~a~~~l~~~---------l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~ 121 (317)
T KOG1471|consen 51 FLRARKFDVEKAKQMLKRY---------LNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKG 121 (317)
T ss_pred HHHHccCCHHHHHHHHHHH---------HHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCccc
Confidence 5899999999999999765 56775442 22222 333444443445778999999999998888664332
Q ss_pred C----CHHHHHHHHHHHhh-----------hhC--CCCCEEEEEEcCCccccCC-CChHHHHHHHHHHchHHHHhccceE
Q 025383 91 V----GGERLKKYIFHKIC-----------SEL--PDGPFCIVYMHTCVQKEDN-YPGFTILRWIYEELPSRIKNRLQIM 152 (253)
Q Consensus 91 ~----d~e~ll~yvi~~Ld-----------~~~--~~~~f~iVy~~tg~s~~~n-~p~~~~l~~~y~~l~~~ykknLk~v 152 (253)
+ ...+.+++.+.-.+ +.. ...-.+.|.+..|++...- .+....++++...++.+||++|+++
T Consensus 122 l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~ 201 (317)
T KOG1471|consen 122 LLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRI 201 (317)
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceE
Confidence 2 23333333222221 111 3455788999999985222 4678899999999999999999999
Q ss_pred EEEcCChHHHHHHHhhccccccccccCeEE-E-eCChhhHHhccCCCCC
Q 025383 153 YFIHPGLWSRLAFATVGRFFLSGGLYWKIK-Y-VSRLQYLWNDIKKGEI 199 (253)
Q Consensus 153 YiVHP~~~~k~~~~~l~kpFis~k~~~KI~-f-V~~l~eL~~~I~~dqL 199 (253)
||||.++++.+ +|++++|||++++++||+ + .++.++|.++|+++.|
T Consensus 202 ~iIN~P~~f~~-~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~L 249 (317)
T KOG1471|consen 202 HIINAPTIFSA-LWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVL 249 (317)
T ss_pred EEEcCchhHHH-HHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhC
Confidence 99998888886 558999999999999999 3 3688999999999876
No 8
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=96.02 E-value=3e-05 Score=67.08 Aligned_cols=176 Identities=30% Similarity=0.335 Sum_probs=132.0
Q ss_pred CcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcC---CccccCCCCh
Q 025383 54 DEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHT---CVQKEDNYPG 130 (253)
Q Consensus 54 ~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~t---g~s~~~n~p~ 130 (253)
.++++++....++-+.+.++.|.-+.-..+..++.+.+.+.....+.-......-.+.+..+.++|+ |.....|.+.
T Consensus 13 ~~~~~~~~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avvl~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~ 92 (200)
T KOG2633|consen 13 AEIFSNITSLEVFKIDKPDNGGISLWRGDGKTLEVDAVVLLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYG 92 (200)
T ss_pred hhhhccccccchhhccCccccCeeEeecccccccceeeeeccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCC
Confidence 5667778888888889999999999888899888755543333333333333334556666666666 5555567777
Q ss_pred HHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCC--hhHHhh
Q 025383 131 FTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIP--EFVQNH 208 (253)
Q Consensus 131 ~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP--~~V~~~ 208 (253)
+...+-++...|..+.+++...|.+|+.......++.- ..+++....||. .......++....-.++.| .++..+
T Consensus 93 Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~--~~ls~iAf~~I~-sg~~gyP~e~aa~~~l~ti~~~f~~~~ 169 (200)
T KOG2633|consen 93 LPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIE--KLLSSIAFPKIS-SGRVGYPWEDAAKIELETIRVFFVKNK 169 (200)
T ss_pred CceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHH--hccceeeeeeee-ccccCccHHHHHHHHHHHHHHHHhhCC
Confidence 88888888889999999999999889888777655422 456767778888 7777888888888888888 788889
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCC
Q 025383 209 DNVLEHRPLTDYGIEPDHLHLPEV 232 (253)
Q Consensus 209 D~~l~~~~l~~~g~~~~~~~~~~~ 232 (253)
|..|...++++|+.|.+..-+..+
T Consensus 170 d~~l~~~~f~~~d~e~~~~~l~~~ 193 (200)
T KOG2633|consen 170 DSSLKTVPFLDYDSESYGAYLPEY 193 (200)
T ss_pred CceEEEEEEeccCCchHHHHHhhh
Confidence 988899999999999887755443
No 9
>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]
Probab=94.72 E-value=0.015 Score=63.72 Aligned_cols=159 Identities=14% Similarity=-0.012 Sum_probs=118.4
Q ss_pred CCCCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCCh
Q 025383 51 LSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPG 130 (253)
Q Consensus 51 is~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~ 130 (253)
+.+.|.|.-+++..++|..| .+.|.|+.++++++.--+..+-+.++.++..++ ++...-++.++-+.+.... +++--
T Consensus 1549 lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~~s~~il~~l~~L~~-kp~~hf~~evreD~T~~~~-d~sfl 1625 (2724)
T KOG1826|consen 1549 LHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKECSDDILIFLVELCL-KPKVHFPGEVREDPTPIEF-DYSFL 1625 (2724)
T ss_pred HhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhhcCcHHHHHHHHHHc-CccccCcceeeecCCcCCc-cHHHH
Confidence 45677888888888889999 999999999999955444455555555566666 5777888888887664332 33333
Q ss_pred HHHHHH-HHHHchHHHHhccceEEEEcCChHHHHHHHhhccccc-cccccCeEEEeCChhhHHhccCCCCCCCChhHHhh
Q 025383 131 FTILRW-IYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFL-SGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNH 208 (253)
Q Consensus 131 ~~~l~~-~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFi-s~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~V~~~ 208 (253)
-+++.. ++...+.-..+|-.+++.++.+.|+|.... +.--.+ .-|--++..|.+..-.|.++|+..|...|-..+-.
T Consensus 1626 tsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~-l~driL~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~ 1704 (2724)
T KOG1826|consen 1626 TSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTK-LHDRILGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHA 1704 (2724)
T ss_pred HHHHhhhheeechhhhhhcccccccccchHHHHHHHH-HHHHHHhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHH
Confidence 344444 777788888999999999999999998773 433222 22334677888899999999999999999988888
Q ss_pred hhhhc
Q 025383 209 DNVLE 213 (253)
Q Consensus 209 D~~l~ 213 (253)
++++.
T Consensus 1705 ~edlk 1709 (2724)
T KOG1826|consen 1705 FEDLK 1709 (2724)
T ss_pred Hhhcc
Confidence 88775
No 10
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=61.30 E-value=0.28 Score=33.27 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=14.7
Q ss_pred EEEeeccCCCcccccccc
Q 025383 14 MVLASDLGIDARPFLSKQ 31 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (253)
+||||+++|++|-.|+.+
T Consensus 37 FLRARkf~v~~A~~mL~~ 54 (55)
T PF03765_consen 37 FLRARKFDVEKAFKMLKK 54 (55)
T ss_dssp HHHHTTT-HHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHh
Confidence 479999999999999853
No 11
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=45.14 E-value=38 Score=27.10 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHHHHHch-HHHHhccc-eEEEEcCC-hHHHHHHHh---hccccccccccCeEEEeCChhhHHhcc
Q 025383 131 FTILRWIYEELP-SRIKNRLQ-IMYFIHPG-LWSRLAFAT---VGRFFLSGGLYWKIKYVSRLQYLWNDI 194 (253)
Q Consensus 131 ~~~l~~~y~~l~-~~ykknLk-~vYiVHP~-~~~k~~~~~---l~kpFis~k~~~KI~fV~~l~eL~~~I 194 (253)
++.|..+++.+. .++..+-+ -+.++++. +|-...-|- .-.-|+++.....+.++++.+++.+.|
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 344445555544 22333445 79999964 665543321 235788888889999999999998765
No 12
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=44.68 E-value=53 Score=25.31 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHHHHhccceEEEE
Q 025383 96 LKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFI 155 (253)
Q Consensus 96 ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ykknLk~vYiV 155 (253)
-++..+..+-..+.+.+|++|=|.+. .-| .+|..+-+.|+.++.++||-
T Consensus 50 ~K~~~i~~i~~~fP~~kfiLIGDsgq-----~Dp------eiY~~ia~~~P~~i~ai~IR 98 (100)
T PF09949_consen 50 HKRDNIERILRDFPERKFILIGDSGQ-----HDP------EIYAEIARRFPGRILAIYIR 98 (100)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeeCCC-----cCH------HHHHHHHHHCCCCEEEEEEE
Confidence 44554544446889999999987542 223 56667777888899999984
No 13
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=44.56 E-value=4.7 Score=34.32 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=70.8
Q ss_pred hhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHH--Hh------hhhCCCCCEEEEEEcCCccccCCCChH
Q 025383 60 LDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFH--KI------CSELPDGPFCIVYMHTCVQKEDNYPGF 131 (253)
Q Consensus 60 l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~--~L------d~~~~~~~f~iVy~~tg~s~~~n~p~~ 131 (253)
+++.|. .+.|+|.+-..|=-++....|-.+..++.++.-.+. .| +..+.+-++++|..-|-.. .++.|++
T Consensus 19 lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~-~~~~~Dl 96 (185)
T PF03721_consen 19 LAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSD-EDGSPDL 96 (185)
T ss_dssp HHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBE-TTTSBET
T ss_pred HHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCcc-ccCCccH
Confidence 455665 777888776666555666666666677887776552 11 1123455677777766553 4778899
Q ss_pred HHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhcccccccccc--CeEEEeCChhhH
Q 025383 132 TILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLY--WKIKYVSRLQYL 190 (253)
Q Consensus 132 ~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~--~KI~fV~~l~eL 190 (253)
+++.++.+.+-...++ .+++++-.|...-+.= .+.+|.+...-. ..+..+.+.+.|
T Consensus 97 s~v~~a~~~i~~~l~~--~~lvV~~STvppGtt~-~~~~~ile~~~~~~~~f~la~~PErl 154 (185)
T PF03721_consen 97 SYVESAIESIAPVLRP--GDLVVIESTVPPGTTE-ELLKPILEKRSGKKEDFHLAYSPERL 154 (185)
T ss_dssp HHHHHHHHHHHHHHCS--CEEEEESSSSSTTHHH-HHHHHHHHHHCCTTTCEEEEE-----
T ss_pred HHHHHHHHHHHHHHhh--cceEEEccEEEEeeeh-HhhhhhhhhhcccccCCeEEECCCcc
Confidence 9999999998876666 7788888554433322 233455543322 455665555543
No 14
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=40.30 E-value=17 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=16.8
Q ss_pred cCCeEeeccCCCCCeEEEEEee
Q 025383 63 LQFFCLQGSDKSGNRIFRLVGK 84 (253)
Q Consensus 63 ~~iiy~~G~Dk~GRPVvvi~~~ 84 (253)
+.+-|+.|.|.+|.||+--..-
T Consensus 8 L~l~~~~G~d~~Gkpi~k~ks~ 29 (47)
T PF07872_consen 8 LRLKYQTGVDENGKPIFKTKSF 29 (47)
T ss_pred EEEEEEcccCCCCCEEEEeeeh
Confidence 4556778999999999765544
No 15
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=37.71 E-value=1e+02 Score=26.71 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=46.4
Q ss_pred CCCCeEEEEEee-cCCCCCCCHHHHHHHHHHHhh---hhCCCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHHHHhc
Q 025383 73 KSGNRIFRLVGK-YFPAPVVGGERLKKYIFHKIC---SELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNR 148 (253)
Q Consensus 73 k~GRPVvvi~~~-~~p~~~~d~e~ll~yvi~~Ld---~~~~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ykkn 148 (253)
+.|-||+-+.+. +|=. ..+.++.-.-+-..++ +.-....+++| |+|. +-..+-.++..||...+++
T Consensus 27 ~~G~~VvGvdsl~Yfw~-~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLi----GYSF-----GADvlP~~~nrLp~~~r~~ 96 (192)
T PF06057_consen 27 KQGVPVVGVDSLRYFWS-ERTPEQTAADLARIIRHYRARWGRKRVVLI----GYSF-----GADVLPFIYNRLPAALRAR 96 (192)
T ss_pred HCCCeEEEechHHHHhh-hCCHHHHHHHHHHHHHHHHHHhCCceEEEE----eecC-----CchhHHHHHhhCCHHHHhh
Confidence 467788888877 3322 2344433322222221 34456677666 2322 2334557899999999999
Q ss_pred cceEEEEcCCh
Q 025383 149 LQIMYFIHPGL 159 (253)
Q Consensus 149 Lk~vYiVHP~~ 159 (253)
++.+.++-|+.
T Consensus 97 v~~v~Ll~p~~ 107 (192)
T PF06057_consen 97 VAQVVLLSPST 107 (192)
T ss_pred eeEEEEeccCC
Confidence 99998877653
No 16
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=37.22 E-value=70 Score=26.49 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=32.6
Q ss_pred hhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEE
Q 025383 61 DSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVY 117 (253)
Q Consensus 61 ~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy 117 (253)
.+.|-++..|.|..|++|.++-.+..+. -..+.+.-++..+. ..++++.+|-
T Consensus 47 ~d~G~l~y~G~De~gn~VY~lG~~~~~~---~~~~al~~l~~i~~--~~~~~i~~vd 98 (148)
T PF11385_consen 47 EDIGRLIYMGTDEYGNEVYILGRKNNGK---IVERALKSLLEILG--IENEEIILVD 98 (148)
T ss_pred CcCceEEEEEEcCCCCEEEEEecCChHH---HHHHHHHHHHHHhC--CCCCcEEEEe
Confidence 4677778889999999998887666521 23444444444332 3345666553
No 17
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=34.39 E-value=39 Score=22.42 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=19.1
Q ss_pred CcchhhhhhcCCeEeeccCCCCCeEEE
Q 025383 54 DEDFSDLDSLQFFCLQGSDKSGNRIFR 80 (253)
Q Consensus 54 ~e~~~~l~~~~iiy~~G~Dk~GRPVvv 80 (253)
+....-|.++|+.++.+.| |||+|.
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~--G~p~V~ 42 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRAD--GRPIVT 42 (47)
T ss_pred HHHHHHHHHCCCeeEECCC--CCEEee
Confidence 4445678889998888765 999964
No 18
>PF10928 DUF2810: Protein of unknown function (DUF2810); InterPro: IPR021230 This is a bacterial family of uncharacterised proteins. This entry contains YibL (P0ADK8 from SWISSPROT), which comigrates with the mature 50S ribosome subunit. It either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2LF0_A.
Probab=32.09 E-value=26 Score=23.93 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHHHhccceEEEEcCChH
Q 025383 143 SRIKNRLQIMYFIHPGLW 160 (253)
Q Consensus 143 ~~ykknLk~vYiVHP~~~ 160 (253)
-+.+|..+.+.||||-.-
T Consensus 20 GkLKKsVrGLvvVHPmTa 37 (54)
T PF10928_consen 20 GKLKKSVRGLVVVHPMTA 37 (54)
T ss_dssp HHHHHHTTS-EEE-SSSH
T ss_pred HHHHhhhceeEEEechHH
Confidence 478999999999999754
No 19
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=30.56 E-value=14 Score=29.90 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=24.1
Q ss_pred cccccchhHhHHHhhhhhhhcccCCCCcchhhhhh
Q 025383 28 LSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDS 62 (253)
Q Consensus 28 ~~~~~~~~~~~~~~~~w~~~~~~is~~e~~~~l~~ 62 (253)
...+|+++||.++.+.||.+.. ...|...++..
T Consensus 78 ~i~~~ta~ee~~d~r~WR~v~i--G~qE~rIDMkv 110 (127)
T PF12496_consen 78 SIPEYTAEEEREDGRRWRTVRI--GEQEHRIDMKV 110 (127)
T ss_pred ccccccccccccCCcceeEEEE--CCccEEEeeEe
Confidence 5679999999999999999774 44444444443
No 20
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.62 E-value=2.5e+02 Score=26.14 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=36.0
Q ss_pred CCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChh
Q 025383 109 PDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQ 188 (253)
Q Consensus 109 ~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~ 188 (253)
..++|+++..|. .+...+...+.-+..+...|... .++.-|+.+|++--.+..+....+-+ +.++++.++.
T Consensus 178 ~~~~~iLvt~H~-~t~~~~~~~~~~i~~~l~~L~~~--~~~~vi~~~hn~p~~~~~i~~~l~~~------~~v~~~~~l~ 248 (346)
T PF02350_consen 178 APKPYILVTLHP-VTNEDNPERLEQILEALKALAER--QNVPVIFPLHNNPRGSDIIIEKLKKY------DNVRLIEPLG 248 (346)
T ss_dssp TTSEEEEEE-S--CCCCTHH--HHHHHHHHHHHHHH--TTEEEEEE--S-HHHHHHHHHHHTT-------TTEEEE----
T ss_pred cCCCEEEEEeCc-chhcCChHHHHHHHHHHHHHHhc--CCCcEEEEecCCchHHHHHHHHhccc------CCEEEECCCC
Confidence 677899999997 33212112355555555555554 58999999996655554444333333 2788887765
No 21
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.84 E-value=36 Score=27.87 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.9
Q ss_pred CCcccccCccCCCCC
Q 025383 233 PNMAYSFGRHDGNWG 247 (253)
Q Consensus 233 ~~~~y~~~~~~~~~~ 247 (253)
=+-||+||.|+++|.
T Consensus 73 cecghsf~d~r~nwk 87 (165)
T COG4647 73 CECGHSFGDYRENWK 87 (165)
T ss_pred EeccccccChhhCce
Confidence 456999999999995
Done!