Query 025383
Match_columns 253
No_of_seqs 163 out of 414
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pg7_A Neurofibromin; SEC lipi 100.0 1E-36 3.4E-41 271.6 13.6 158 54-213 1-158 (256)
2 3peg_A Neurofibromin; SEC14 do 100.0 1.8E-29 6.3E-34 228.4 12.0 150 53-204 19-168 (290)
3 1r5l_A Alpha-TTP, protein (alp 99.9 7.2E-24 2.5E-28 186.4 6.5 174 14-199 39-225 (262)
4 3hx3_A Retinaldehyde-binding p 99.9 8.5E-24 2.9E-28 192.8 6.0 175 14-199 98-284 (316)
5 1aua_A Phosphatidylinositol tr 99.9 1.5E-23 5.1E-28 188.5 2.8 175 14-199 58-257 (296)
6 1olm_A SEC14-like protein 2; l 99.9 1.4E-22 4.7E-27 189.7 5.4 175 14-199 41-237 (403)
7 3q8g_A CRAL-TRIO domain-contai 99.9 3.7E-23 1.3E-27 189.1 0.9 175 14-199 67-272 (320)
8 1c76_A Staphylokinase, SAK; be 59.8 28 0.00097 27.1 6.7 55 67-122 28-85 (136)
9 2sak_A Staphylokinase; plasmin 56.2 38 0.0013 26.1 6.8 55 67-122 13-70 (121)
10 1ow3_A RHO-GTPase-activating p 40.5 5.8 0.0002 33.7 0.0 21 193-213 1-21 (242)
11 3sbx_A Putative uncharacterize 27.4 73 0.0025 26.1 4.6 47 150-196 139-189 (189)
12 2q3l_A Uncharacterized protein 21.0 2.5E+02 0.0086 20.8 6.4 100 78-190 21-121 (126)
13 1rcu_A Conserved hypothetical 20.9 88 0.003 25.7 3.9 59 131-195 129-190 (195)
14 3qua_A Putative uncharacterize 20.9 98 0.0034 25.5 4.2 47 150-196 148-198 (199)
No 1
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=100.00 E-value=1e-36 Score=271.57 Aligned_cols=158 Identities=19% Similarity=0.250 Sum_probs=150.4
Q ss_pred CcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHHH
Q 025383 54 DEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTI 133 (253)
Q Consensus 54 ~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~~ 133 (253)
.|||+++++++++|++|.|++||||+|+++|++|....|+|.++.|++.+++ .+.+++|++||+|||++ ..|.|+++|
T Consensus 1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~-~~~~~~y~lV~d~T~~~-~~n~p~~~w 78 (256)
T 3pg7_A 1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLK-PYYAKPYEIVVDLTHTG-PSNRFKTDF 78 (256)
T ss_dssp CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHT-TTTTSCEEEEEECTTCC-GGGCCCHHH
T ss_pred CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCCCC-cccCCcHHH
Confidence 4899999999999999999999999999999999988999999999999997 88899999999999997 589999999
Q ss_pred HHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCChhHHhhhhhhc
Q 025383 134 LRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLE 213 (253)
Q Consensus 134 l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~V~~~D~~l~ 213 (253)
++++|+.+|++|+|||+++|||||++|+|.++|.+.++|.+.|+.+|++|++++++|.++|+++||.||+.+.++|+++.
T Consensus 79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~d~r 158 (256)
T 3pg7_A 79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK 158 (256)
T ss_dssp HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTSSCE
T ss_pred HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHcCCChHHHhhcccce
Confidence 99999999999999999999999999999877777889999999999999999999999999999999999999998753
No 2
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=228.36 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=124.4
Q ss_pred CCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHH
Q 025383 53 PDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFT 132 (253)
Q Consensus 53 ~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~ 132 (253)
..|++++|+..+++|+.|.|++||||+|+++|+++....|+|.++.|++.+++ .+.+++|++||||||++ ..|.|+..
T Consensus 19 ~~e~~~~i~~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~-~~~~~~y~lV~D~T~~~-~~n~p~~~ 96 (290)
T 3peg_A 19 EKEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLK-PYYAKPYEIVVDLTHTG-PSNRFKTD 96 (290)
T ss_dssp -----CCGGGTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHT-TTTTSCEEEEEECTTCC-GGGCCCHH
T ss_pred ChhhhhhhhcCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHH-HhcCCCeEEEEEcCCCC-ccCCChHH
Confidence 46789999999999999999999999999999999888999999999999997 78889999999999997 48999999
Q ss_pred HHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCChh
Q 025383 133 ILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEF 204 (253)
Q Consensus 133 ~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~ 204 (253)
|++++++++|++|++||+++||+||++|+|.++|.+.++|.+.|+.+|++|++++.+|.++|+++|+.+|+.
T Consensus 97 ~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~~~L~~~i~~~~~~lp~~ 168 (290)
T 3peg_A 97 FLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAA 168 (290)
T ss_dssp HHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSSCC---------------
T ss_pred HHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCHHHHHhhCCHHHhcCccc
Confidence 999999999999999999999999999999887667799999999999999999999999999999999773
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.89 E-value=7.2e-24 Score=186.42 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=141.6
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcccCC---CCcchhhhhhcCCe-EeeccCCCCCeEEEEEeecCCCC
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLS---PDEDFSDLDSLQFF-CLQGSDKSGNRIFRLVGKYFPAP 89 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~is---~~e~~~~l~~~~ii-y~~G~Dk~GRPVvvi~~~~~p~~ 89 (253)
+||||++++++|.+|+.+| .+||+.++.+. ....+.++.+.|.. +..|+|++||||+++..+++..+
T Consensus 39 FLra~k~dv~~A~~~l~~~---------l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~ 109 (262)
T 1r5l_A 39 FLRARDFDLDLAWRLLKNY---------YKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPK 109 (262)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------HHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTT
T ss_pred HHHhCCCCHHHHHHHHHHH---------HHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcc
Confidence 5899999999999999877 78887664211 12224445567764 55799999999999999988776
Q ss_pred CCCHHHHHHHHHHHhhhhCCC-----CCEEEEEEcCCccccCCC--ChHHHHHHHHHHchHHHHhccceEEEEcCChHHH
Q 025383 90 VVGGERLKKYIFHKICSELPD-----GPFCIVYMHTCVQKEDNY--PGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSR 162 (253)
Q Consensus 90 ~~d~e~ll~yvi~~Ld~~~~~-----~~f~iVy~~tg~s~~~n~--p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k 162 (253)
..+.+.++++++..+|..+.+ +.+++|++.+|++. .|. +..+.++.+...++.+||++|+++||||+++++.
T Consensus 110 ~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~-~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~ 188 (262)
T 1r5l_A 110 VFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF-SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFH 188 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH-HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGH
T ss_pred cCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCH-HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHH
Confidence 678888999988888744432 34899999999974 443 3578999999999999999999999999999998
Q ss_pred HHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383 163 LAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI 199 (253)
Q Consensus 163 ~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL 199 (253)
+++ ++++||+++++++||+++.+ .++|.++|+ ++|
T Consensus 189 ~~~-~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~L 225 (262)
T 1r5l_A 189 AVF-SMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DIL 225 (262)
T ss_dssp HHH-HHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTS
T ss_pred HHH-HHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhC
Confidence 854 79999999999999999954 689999998 876
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.88 E-value=8.5e-24 Score=192.75 Aligned_cols=175 Identities=14% Similarity=0.144 Sum_probs=145.2
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcccC-C--CCcchhhhhhcCCe-EeeccCCCCCeEEEEEeecCCCC
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYL-S--PDEDFSDLDSLQFF-CLQGSDKSGNRIFRLVGKYFPAP 89 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~i-s--~~e~~~~l~~~~ii-y~~G~Dk~GRPVvvi~~~~~p~~ 89 (253)
+||||++++++|.+|+.+| .+||..++.+ . ..+++.++.+.|++ +..|+|++||||+++.++++..+
T Consensus 98 FLRarkfdv~kA~~~L~~~---------l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~ 168 (316)
T 3hx3_A 98 FIRARKFNVGRAYELLRGY---------VNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQ 168 (316)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------HHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTT
T ss_pred HHHHcCCCHHHHHHHHHHH---------HHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCC
Confidence 6899999999999999888 8899877521 1 12334455567774 55799999999999999988777
Q ss_pred CCCHHHHHHHHHHHhhhhCCC-----CCEEEEEEcCCccccCCC--ChHHHHHHHHHHchHHHHhccceEEEEcCChHHH
Q 025383 90 VVGGERLKKYIFHKICSELPD-----GPFCIVYMHTCVQKEDNY--PGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSR 162 (253)
Q Consensus 90 ~~d~e~ll~yvi~~Ld~~~~~-----~~f~iVy~~tg~s~~~n~--p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k 162 (253)
..+.++++++++..+|..+.. +.+++|+|.+|++. .+. .+.+.++++..+++.+||++|+++||||+++++.
T Consensus 169 ~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl-~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~ 247 (316)
T 3hx3_A 169 EITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTM-QQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFT 247 (316)
T ss_dssp TSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH-HHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCH-HHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHH
Confidence 788999999999999855532 36899999999974 332 3467899999999999999999999999999998
Q ss_pred HHHHhhccccccccccCeEEEe-CChhhHHhccCCCCC
Q 025383 163 LAFATVGRFFLSGGLYWKIKYV-SRLQYLWNDIKKGEI 199 (253)
Q Consensus 163 ~~~~~l~kpFis~k~~~KI~fV-~~l~eL~~~I~~dqL 199 (253)
+++ ++++||+++++++||+++ +++++|.++|++++|
T Consensus 248 ~i~-~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~L 284 (316)
T 3hx3_A 248 TTY-NVVKPFLKSKLLERVFVHGDDLSGFYQEIDENIL 284 (316)
T ss_dssp HHH-HHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGS
T ss_pred HHH-HHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhC
Confidence 855 799999999999999999 578999999999876
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.87 E-value=1.5e-23 Score=188.45 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=137.8
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCCc---chhhhhhcCCeEeeccCCCCCeEEEEEeecCCC
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPDE---DFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPA 88 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~e---~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~ 88 (253)
+||||++++++|.+|+.+| .+||+.+. .+-... ....+.+....+..|+|++||||+++..+++..
T Consensus 58 FLrarkfdv~~A~~~l~~~---------l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~ 128 (296)
T 1aua_A 58 FLRARKFDVQLAKEMFENC---------EKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNL 128 (296)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------HHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCH
T ss_pred HHHHcCCCHHHHHHHHHHH---------HHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCCh
Confidence 5899999999999999877 78887662 111111 122344444457789999999999999887753
Q ss_pred ----CCCCHHHHHHHHHHHhhhhC-------------CCCCEEEEEEcCCccccCCCCh-HHHHHHHHHHchHHHHhccc
Q 025383 89 ----PVVGGERLKKYIFHKICSEL-------------PDGPFCIVYMHTCVQKEDNYPG-FTILRWIYEELPSRIKNRLQ 150 (253)
Q Consensus 89 ----~~~d~e~ll~yvi~~Ld~~~-------------~~~~f~iVy~~tg~s~~~n~p~-~~~l~~~y~~l~~~ykknLk 150 (253)
+..+.++++++++..+|..+ ..+.+++|++.+|++. .+.+. .++++.+..+++.+||++|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~-~~~~~~~~~~k~~~~~~q~~YPerl~ 207 (296)
T 1aua_A 129 HEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISI-SSAYSVMSYVREASYISQNYYPERMG 207 (296)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH-HHHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHhHHHhhC
Confidence 23578888888887775321 2456899999999975 45544 57889999999999999999
Q ss_pred eEEEEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383 151 IMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI 199 (253)
Q Consensus 151 ~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL 199 (253)
++||||+++++.++ |++++||+++++++||+++.+ .++|.++|++++|
T Consensus 208 ~i~iiN~P~~f~~~-~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 257 (296)
T 1aua_A 208 KFYIINAPFGFSTA-FRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL 257 (296)
T ss_dssp EEEEESCCHHHHHH-HHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred eEEEECchHHHHHH-HHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence 99999999999985 479999999999999999965 6789999999864
No 6
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.86 E-value=1.4e-22 Score=189.72 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=139.8
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCC--
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAP-- 89 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~-- 89 (253)
+||||++++++|.+|+.+| .+||+.+. .+-.......+.+....++.|+|++||||+++..+++..+
T Consensus 41 FLrarkfdv~~A~~~l~~~---------l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l 111 (403)
T 1olm_A 41 WLRARSFDLQKSEAMLRKH---------VEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGL 111 (403)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------HHHHHHTTGGGGGGSCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHH---------HHHHHHcCCCcccccCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHh
Confidence 5899999999999999877 89998653 1211111223333333456899999999999999987643
Q ss_pred --CCCHHHHHHHHHHHhhhhC------------CCCCEEEEEEcCCccccCCC--ChHHHHHHHHHHchHHHHhccceEE
Q 025383 90 --VVGGERLKKYIFHKICSEL------------PDGPFCIVYMHTCVQKEDNY--PGFTILRWIYEELPSRIKNRLQIMY 153 (253)
Q Consensus 90 --~~d~e~ll~yvi~~Ld~~~------------~~~~f~iVy~~tg~s~~~n~--p~~~~l~~~y~~l~~~ykknLk~vY 153 (253)
..+.++++++++..+|..+ ..+.+++|+|.+|++. .+. |.+.+++++..+++.+||++|+++|
T Consensus 112 ~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl-~~~~~~~~~~~k~~~~~lq~~YPerl~~i~ 190 (403)
T 1olm_A 112 LFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGL-KHLWKPAVEAYGEFLCMFEENYPETLKRLF 190 (403)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCG-GGGCHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCH-HHHhhHHHHHHHHHHHHHHhhCcHhhCeEE
Confidence 4688999999988887322 2467999999999985 343 4678999999999999999999999
Q ss_pred EEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383 154 FIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI 199 (253)
Q Consensus 154 iVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL 199 (253)
|||+++++.++ |++++||+++++++||+++.+ .++|.++|++++|
T Consensus 191 iiN~P~~f~~i-~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L 237 (403)
T 1olm_A 191 VVKAPKLFPVA-YNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237 (403)
T ss_dssp EESCCTTHHHH-HHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred EEeCCHHHHHH-HHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence 99999999884 479999999999999999964 5789999999865
No 7
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.86 E-value=3.7e-23 Score=189.10 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=138.1
Q ss_pred EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCCc---------chhhhhhcCCeEeeccCCCCCeEEEEE
Q 025383 14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPDE---------DFSDLDSLQFFCLQGSDKSGNRIFRLV 82 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~e---------~~~~l~~~~iiy~~G~Dk~GRPVvvi~ 82 (253)
+||||++++++|.+|+.+| .+||+.+. .+-..- ....+.+....+..|+|++||||+++.
T Consensus 67 FLRArkfdv~kA~~mL~~~---------l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r 137 (320)
T 3q8g_A 67 FLRARKFDINASVEMFVET---------ERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAE 137 (320)
T ss_dssp HHHHTTTCHHHHHHHHHHH---------HHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEE
T ss_pred HHHHcCCCHHHHHHHHHHH---------HHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEe
Confidence 5899999999999999877 78987664 111111 112345566678899999999999999
Q ss_pred eecCCCCC----CCHHHHHHHHHHHhhhhC-------------CCCCEEEEEEcCCccccCCCCh-HHHHHHHHHHchHH
Q 025383 83 GKYFPAPV----VGGERLKKYIFHKICSEL-------------PDGPFCIVYMHTCVQKEDNYPG-FTILRWIYEELPSR 144 (253)
Q Consensus 83 ~~~~p~~~----~d~e~ll~yvi~~Ld~~~-------------~~~~f~iVy~~tg~s~~~n~p~-~~~l~~~y~~l~~~ 144 (253)
.+.+..+. .+.++++++++..+|..+ ..+..++|++.+|++. .+.+. .++++++..+++.+
T Consensus 138 ~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl-~~~~~~~~~~k~~~~~lq~~ 216 (320)
T 3q8g_A 138 LGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISL-SNAYHVLSYIKDVADISQNY 216 (320)
T ss_dssp CTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH-HHHHHTHHHHHHHHHHHHHH
T ss_pred ccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCH-HHHHHHHHHHHHHHHHHHhh
Confidence 98776432 367788888777665321 2466789999999984 44433 67889999999999
Q ss_pred HHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383 145 IKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI 199 (253)
Q Consensus 145 ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL 199 (253)
||++|+++||||+++++++ +|++++||+++++++||+++.+ .++|.++|++++|
T Consensus 217 YPerl~~i~iiN~P~~f~~-~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L 272 (320)
T 3q8g_A 217 YPERMGKFYIIHSPFGFST-MFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENL 272 (320)
T ss_dssp STTCEEEEEEESCCTTHHH-HHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGS
T ss_pred CchhhceEEEECCCHHHHH-HHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhC
Confidence 9999999999999999988 5589999999999999999965 6899999999875
No 8
>1c76_A Staphylokinase, SAK; beta-grAsp family, hydrolase; 2.25A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1c77_A 1c78_A 1c79_A 1ssn_A
Probab=59.80 E-value=28 Score=27.13 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=41.4
Q ss_pred EeeccCCCCCeEE---EEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCc
Q 025383 67 CLQGSDKSGNRIF---RLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCV 122 (253)
Q Consensus 67 y~~G~Dk~GRPVv---vi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~ 122 (253)
-+-|+|..|.-|+ ++-.+--+...++-+.++.|+-..|+ ....+.|.+|-++.+.
T Consensus 28 NVTGvD~~G~~ilsP~Y~e~~Lk~G~tltKeeil~~VQ~~id-as~~~~f~vV~~~e~a 85 (136)
T 1c76_A 28 NVTGVDGKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALD-ATAYKEFRVVELDPSA 85 (136)
T ss_dssp EEEEECTTCCEEECCCCEEEECCTTCEECHHHHHHHHHHHHT-TSTTTTEEEEEECTTC
T ss_pred EEeeecCCCCEEeccccEEEecCcCceecHHHHHHHHHHHhh-hhhcCceEEEecCCCc
Confidence 3479999999876 22222223456789999999999996 7888899999887753
No 9
>2sak_A Staphylokinase; plasminogen activation, fibrinolysis, hydrolase, plasminogen activator; 1.80A {Staphylococcus aureus} SCOP: d.15.5.1 PDB: 1bui_C*
Probab=56.25 E-value=38 Score=26.08 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=43.7
Q ss_pred EeeccCCCCCeEEEEEeecCC--C-CCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCc
Q 025383 67 CLQGSDKSGNRIFRLVGKYFP--A-PVVGGERLKKYIFHKICSELPDGPFCIVYMHTCV 122 (253)
Q Consensus 67 y~~G~Dk~GRPVvvi~~~~~p--~-~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~ 122 (253)
-+.|+|+.|.-++..-.--++ + ..++-+.++.++-..++ ......|-+|-|+.+.
T Consensus 13 NvtGvd~~g~~~~~p~y~d~~l~~g~~~tK~elL~~Vq~~id-as~~~qf~vVdf~e~A 70 (121)
T 2sak_A 13 NVTGVDSKGNELLSPHYVEFPIKPGTTLTKEKIEYYVEWALD-ATAYKEFRVVELDPSA 70 (121)
T ss_dssp EEEEECTTCCEEEEEEEEEEECCTTCEECHHHHHHHHHHHHT-TSTTTTCEEEEECTTC
T ss_pred EEEeEeCCCCEEEeeeeEEEEcccCcEecHHHHHHHHHHHhh-hhhccceEEEecCccc
Confidence 457999999999877666444 3 45689999999999996 6666699999998753
No 10
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=40.55 E-value=5.8 Score=33.73 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=0.0
Q ss_pred ccCCCCCCCChhHHhhhhhhc
Q 025383 193 DIKKGEIEIPEFVQNHDNVLE 213 (253)
Q Consensus 193 ~I~~dqL~iP~~V~~~D~~l~ 213 (253)
+|+.+||.||+.|++||..+.
T Consensus 1 ~~~~~ql~ip~~v~~~~~~~~ 21 (242)
T 1ow3_A 1 HVKLEQLGIPRQVLKYDDFLK 21 (242)
T ss_dssp ---------------------
T ss_pred CCChhhcCCCHHHHHHHHHHH
Confidence 578899999999999998774
No 11
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.37 E-value=73 Score=26.12 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=35.4
Q ss_pred ceEEEEcC-ChHHHHHHH--h-hccccccccccCeEEEeCChhhHHhccCC
Q 025383 150 QIMYFIHP-GLWSRLAFA--T-VGRFFLSGGLYWKIKYVSRLQYLWNDIKK 196 (253)
Q Consensus 150 k~vYiVHP-~~~~k~~~~--~-l~kpFis~k~~~KI~fV~~l~eL~~~I~~ 196 (253)
|-+.+++. .+|-...-| . +-.-|+++.-.+.++++++.+++.+.|.+
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l~~ 189 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQACAP 189 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHHCC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHhcC
Confidence 67999996 677654432 1 22468888888999999999999988764
No 12
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=21.02 E-value=2.5e+02 Score=20.79 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=58.1
Q ss_pred EEEEEe-ecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHHHHhccceEEEEc
Q 025383 78 IFRLVG-KYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIH 156 (253)
Q Consensus 78 Vvvi~~-~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ykknLk~vYiVH 156 (253)
|+.+.. ..+.. .|++.+...+-..++ ....+...++++.+.+..+ .+..+..-.. +...+.+...++=||=
T Consensus 21 vl~v~~~G~lt~--~d~~~l~~~l~~~l~-~~~~~~i~ll~~~~~f~G~----~~~a~~~d~k-~~~~h~~~~~RiAvV~ 92 (126)
T 2q3l_A 21 YLAFKAVGKLTH--EDYEQMTPLLESALA-GIKTPEIVALIDITELDGL----SLHAAWDDLK-LGLKHGKEFKRVAIIG 92 (126)
T ss_dssp EEEEEEEEEECH--HHHHHHHHHHHHHTT-TCCSSCEEEEEEEEEEEEE----CHHHHHHHHH-HHHHHGGGEEEEEEEC
T ss_pred EEEEEEEeeECH--HHHHHHHHHHHHHHH-hCCCceEEEEEEecCCCCC----CHHHHHHHHH-hhhhHHhcCCEEEEEc
Confidence 444443 36632 356666655555553 3333337777765544321 1333333222 3456678899999999
Q ss_pred CChHHHHHHHhhccccccccccCeEEEeCChhhH
Q 025383 157 PGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYL 190 (253)
Q Consensus 157 P~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL 190 (253)
-.-|.+.... +.++|++. .+.+.++.++=
T Consensus 93 d~~W~~~~~~-~~~~~~~~----evk~F~~~~~A 121 (126)
T 2q3l_A 93 QGELQEWATR-VANWFTPG----EFKFFEDKRDA 121 (126)
T ss_dssp CSHHHHHHHH-HHHHHCSS----EEEEESCHHHH
T ss_pred ChHHHHHHHH-HHhhccCC----ceeccCCHHHH
Confidence 9999998884 77888654 45555655543
No 13
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=20.91 E-value=88 Score=25.75 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=40.7
Q ss_pred HHHHHHHHHHchHHHHhccceEEEEc-CChHHHHHHHhhcc-c-cccccccCeEEEeCChhhHHhccC
Q 025383 131 FTILRWIYEELPSRIKNRLQIMYFIH-PGLWSRLAFATVGR-F-FLSGGLYWKIKYVSRLQYLWNDIK 195 (253)
Q Consensus 131 ~~~l~~~y~~l~~~ykknLk~vYiVH-P~~~~k~~~~~l~k-p-Fis~k~~~KI~fV~~l~eL~~~I~ 195 (253)
...|..++..+.. =|-|++++ .++|-.. +..+.. - |+++...+.+.++++.+++.+.|.
T Consensus 129 ~GTL~E~~eal~~-----~kPV~lln~~g~w~~~-l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 129 IGTAIEILGAYAL-----GKPVILLRGTGGWTDR-ISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHHHHHHHHHHT-----TCCEEEETTSCHHHHH-GGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHhc-----CCCEEEECCCCccHHH-HHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHH
Confidence 4455556655542 26799997 5666543 223333 3 899999999999999999987764
No 14
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=20.91 E-value=98 Score=25.55 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=34.9
Q ss_pred ceEEEEcC-ChHHHHHHH--hh-ccccccccccCeEEEeCChhhHHhccCC
Q 025383 150 QIMYFIHP-GLWSRLAFA--TV-GRFFLSGGLYWKIKYVSRLQYLWNDIKK 196 (253)
Q Consensus 150 k~vYiVHP-~~~~k~~~~--~l-~kpFis~k~~~KI~fV~~l~eL~~~I~~ 196 (253)
|-+.+++. ++|-...-| .+ -.-|+++.-.+.++++++.+++.+.|.+
T Consensus 148 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~~e~~~~l~~ 198 (199)
T 3qua_A 148 KPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALEACAP 198 (199)
T ss_dssp CCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESSHHHHHHHHSC
T ss_pred CCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHHHHhc
Confidence 67999996 677654333 12 2357777778899999999999988864
Done!