BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025385
MGAEAKATHLMMSKVFSTCNLPISISKSKSFKLVPHHNSKIYAASFKKNIDSSQPQIVKK
SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS
IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD
PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWGR
LLELRNTQLYGMH

High Scoring Gene Products

Symbol, full name Information P value
AT3G19800 protein from Arabidopsis thaliana 5.1e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025385
        (253 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092256 - symbol:AT3G19800 "AT3G19800" species...   596  5.1e-58   1


>TAIR|locus:2092256 [details] [associations]
            symbol:AT3G19800 "AT3G19800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR
            InterPro:IPR003772 Pfam:PF02620 EMBL:AF360150 EMBL:AY056306
            EMBL:AY088088 IPI:IPI00520022 RefSeq:NP_566648.1 UniGene:At.19008
            UniGene:At.66494 STRING:Q9C5M1 PRIDE:Q9C5M1
            EnsemblPlants:AT3G19800.1 GeneID:821517 KEGG:ath:AT3G19800
            TAIR:At3g19800 HOGENOM:HOG000240921 InParanoid:Q9C5M1 OMA:RIMTSIA
            PhylomeDB:Q9C5M1 ProtClustDB:CLSN2688575 ArrayExpress:Q9C5M1
            Genevestigator:Q9C5M1 Uniprot:Q9C5M1
        Length = 229

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 115/186 (61%), Positives = 147/186 (79%)

Query:    61 SSKIPRPLITVSPSDGRWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLS 120
             SSK  + LIT+SPS+G+W+GNW ++Y VSL+ L+L DL+ED          +++VS++LS
Sbjct:    49 SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGP-------PNSRVSVDLS 101

Query:   121 IQKHASFGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGD 180
             +Q+HAS G SVDGRI+TS +RKCS CSS Y + IDT+F VW+L SSRENR   LP+IGGD
Sbjct:   102 VQRHASMGLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGD 161

Query:   181 -PSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQYIGAKNTASMAKRWG 239
              PSVIYV+PGY+A+LDSLVQDTIRLTT  KD CS++CE SEPT+ Y+G  NTAS+ KRW 
Sbjct:   162 DPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWS 221

Query:   240 RLLELR 245
             RLLEL+
Sbjct:   222 RLLELK 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       253   0.00083  114 3  11 22  0.47    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  205 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.07u 0.09s 23.16t   Elapsed:  00:00:02
  Total cpu time:  23.07u 0.09s 23.16t   Elapsed:  00:00:02
  Start:  Fri May 10 07:04:43 2013   End:  Fri May 10 07:04:45 2013

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