Query 025385
Match_columns 253
No_of_seqs 87 out of 89
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02620 DUF177: Uncharacteriz 100.0 1.4E-28 3.1E-33 193.0 9.5 112 131-245 1-119 (119)
2 PRK11193 hypothetical protein; 99.9 9.4E-24 2E-28 179.5 11.6 140 88-246 26-172 (172)
3 COG1399 Predicted metal-bindin 99.9 1.4E-23 3.1E-28 180.9 11.9 129 113-247 42-176 (176)
4 PF09151 DUF1936: Domain of un 32.7 19 0.00041 24.1 0.5 9 217-225 1-9 (36)
5 PRK06266 transcription initiat 25.2 24 0.00052 30.9 0.0 52 194-246 101-170 (178)
6 PRK00762 hypA hydrogenase nick 23.6 34 0.00074 28.2 0.6 19 205-225 66-100 (124)
7 PF12151 MVL: Mannan-binding p 22.0 20 0.00044 24.3 -0.8 15 74-88 15-29 (37)
8 PF01267 F-actin_cap_A: F-acti 21.2 70 0.0015 29.8 2.2 14 77-90 158-171 (271)
9 COG5349 Uncharacterized protei 20.3 45 0.00098 28.4 0.7 10 216-225 20-29 (126)
10 PF14787 zf-CCHC_5: GAG-polypr 20.0 43 0.00093 22.8 0.4 9 217-225 2-10 (36)
No 1
>PF02620 DUF177: Uncharacterized ACR, COG1399; InterPro: IPR003772 This entry describes proteins of unknown function.
Probab=99.95 E-value=1.4e-28 Score=193.03 Aligned_cols=112 Identities=23% Similarity=0.399 Sum_probs=93.7
Q ss_pred EEEEEEEEEeeccCccccccccccceeEEEEEEeccccccCCCCCCCCCCCceeeecCCceeeCcHHHHHhhhhcCCCcc
Q 025385 131 VDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKD 210 (253)
Q Consensus 131 V~G~I~t~ve~~CdRCLkpf~~~Id~~f~e~~~~~~~ed~~~el~El~~d~~~iy~~~GDeIDLdelI~EqIiLalPmK~ 210 (253)
|+|+|++++..+|+|||++|.++++.+|.+.|.+..... +..+..+++..++.+.++.|||.++|+|+|+|++||++
T Consensus 1 v~g~i~~~v~~~C~RCL~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~iDl~~~i~e~ilL~iP~~~ 77 (119)
T PF02620_consen 1 VDGRIEGTVTLPCDRCLEPFDYPIDEDFEEVFVPEEEEE---EDEELDEEDEEVIPVEDDEIDLAELIEEEILLAIPMKP 77 (119)
T ss_pred CEEEEEEEEEEEEcccCcccCceEEEEEEEEEEcCCccc---ccccCCCCCceEEecCCCEEeHHHHHHHHHHHcCCCcc
Confidence 689999999999999999999999999999998763321 11111113334444689999999999999999999999
Q ss_pred cCCCCCcc--cCcccccc-----cCccCCCCCchHHHHHHHH
Q 025385 211 TCSETCEN--SEPTVQYI-----GAKNTASMAKRWGRLLELR 245 (253)
Q Consensus 211 LCSEDCKG--LCP~CG~~-----c~c~~e~IDPR~AkLkkL~ 245 (253)
+|+++|+| +|+.||.. |.|..+.+|||||+|++||
T Consensus 78 ~c~~~C~~~~~~~~~~~~~~~~~~~~~~~~~dPrfa~L~~Lk 119 (119)
T PF02620_consen 78 LCSEDCKGEMLCPVCGANLNEEPCECEEEKIDPRFAALKKLK 119 (119)
T ss_pred cCcccCcccccCCcccccccccccccccCCCCCCHHHHhccC
Confidence 99999999 99999992 6778899999999999985
No 2
>PRK11193 hypothetical protein; Provisional
Probab=99.90 E-value=9.4e-24 Score=179.48 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=107.6
Q ss_pred eccccc-cccccccCCcccccCCCcccceEEEEEEEEecC-CeEEEEEEEEEEEeeccCccccccccccceeEEEEEEec
Q 025385 88 VSLKQL-RLADLIEDDDHLHQHKNKDAQVSINLSIQKHAS-FGFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLS 165 (253)
Q Consensus 88 ~sl~~l-~l~d~~~~~~~l~~~~~k~apV~V~l~V~k~~g-~~l~V~G~I~t~ve~~CdRCLkpf~~~Id~~f~e~~~~~ 165 (253)
+.|.+| ||.++..+. .+||+|++.+.+. + +++.|+|++++.+...|+|||++|.++++.+|...|+.+
T Consensus 26 ~~~~~l~Rl~~~l~~~---------~~~v~v~~~~~~~-~~~~~~v~g~v~~~v~l~C~RCL~~~~~~l~~~~~~~~~~~ 95 (172)
T PRK11193 26 YPPEQLKRLAESVVSV---------DSDVEVSLSFGID-NQRLVVLKGKAVVEVTLECQRCNEPFTHQVEVEFCFSPVRN 95 (172)
T ss_pred ecHHHhhHHHHHhcCc---------CCceEEEEEEEEc-CCCeEEEEEEEEEEEEEECCCCCccCceEEEEEEEEEEecC
Confidence 344444 565555543 4689999999999 6 589999999999999999999999999999999888643
Q ss_pred cccccCCCCCCCCCCCceeeecCCceeeCcHHHHHhhhhcCCCcccCCCCCcccCccccc-----ccCccCCCCCchHHH
Q 025385 166 SRENRNVQLPDIGGDPSVIYVKPGYQADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQY-----IGAKNTASMAKRWGR 240 (253)
Q Consensus 166 ~~ed~~~el~El~~d~~~iy~~~GDeIDLdelI~EqIiLalPmK~LCSEDCKGLCP~CG~-----~c~c~~e~IDPR~Ak 240 (253)
.++ ..+++ ++...+++.+|+.|||+++|+|+|+|++||+++|+++ +||.||. .|.|..+..+| ||+
T Consensus 96 e~~--~~~~~---~~~e~~~~~~~~~iDl~~lv~dellLaLP~~plc~~~---~C~~~~~~~~~~~~~~~~~~~~P-FAv 166 (172)
T PRK11193 96 DEQ--AEELP---EAYEPIEVNEFGEVDLLQLVEDELILALPIVPMHDSE---HCEVSEADMVFGELPEEAEKPNP-FAV 166 (172)
T ss_pred hhh--hhhCc---ccccceeeCCcCcccHHHHHHHHHHHcCCCcCcCCcc---cCCCcccccccCCCchhccCCCh-HHH
Confidence 211 11111 2212233367899999999999999999999999998 8999996 25555556677 999
Q ss_pred HHHHHH
Q 025385 241 LLELRN 246 (253)
Q Consensus 241 LkkL~k 246 (253)
|++||+
T Consensus 167 L~~Lk~ 172 (172)
T PRK11193 167 LASLKR 172 (172)
T ss_pred HHHhcC
Confidence 999974
No 3
>COG1399 Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=180.95 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=99.3
Q ss_pred cceEEEEEEEEecCC-eEEEEEEEEEEEeeccCccccccccccceeEEEEEEeccccccCCCCCCCCCCCceeeecCCce
Q 025385 113 AQVSINLSIQKHASF-GFSVDGRIITSFSRKCSYCSSPYCKKIDTTFNVWVLLSSRENRNVQLPDIGGDPSVIYVKPGYQ 191 (253)
Q Consensus 113 apV~V~l~V~k~~g~-~l~V~G~I~t~ve~~CdRCLkpf~~~Id~~f~e~~~~~~~ed~~~el~El~~d~~~iy~~~GDe 191 (253)
.++.+.+..... +. ++.++|++.+.+...|+|||++|.++++..+++.|+.+... ..+++ .++..+.++++++
T Consensus 42 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~C~Rcl~~~~~~~~~~~~~~f~~~~~~--~~~~~---~~dd~v~v~~~~~ 115 (176)
T COG1399 42 DPGVVVGVSAYA-EIDLVVLDGQVSAEVTLECQRCLEPVEYPLDVTVTELFVRPDEQ--ADEEP---LEDDEVEVIEDGE 115 (176)
T ss_pred CcceeeEEEEee-ccceEEEEEEEEEEEEEcccccCCcceeeEEEEEEEEeecCccc--ccccc---CCCceeeeccCCc
Confidence 343444444443 34 59999999999999999999999999999999999866321 11111 1223333366779
Q ss_pred eeCcHHHHHhhhhcCCCcccCCCCCcccCccccc-c----cCccCCCCCchHHHHHHHHHh
Q 025385 192 ADLDSLVQDTIRLTTAVKDTCSETCENSEPTVQY-I----GAKNTASMAKRWGRLLELRNT 247 (253)
Q Consensus 192 IDLdelI~EqIiLalPmK~LCSEDCKGLCP~CG~-~----c~c~~e~IDPR~AkLkkL~k~ 247 (253)
|||.+.|.|+|+|++||+++|.++|+|+|+.||. . -+++.+.+|||||+|++||++
T Consensus 116 iDL~~~VeDeilLalP~~~l~~~~~~g~~~~~g~~~~~~ee~~~~~~vd~rfA~La~Lk~~ 176 (176)
T COG1399 116 IDLLESVEDEILLALPLVPLCEPECCGLCPPCGVWGVLPEEGEKKEKVDPRFAVLADLKDK 176 (176)
T ss_pred ccHHHHHHHHHHHhCCCccccCccccccCcccCCccccCchhhhhccCCChHHHHHHhhcC
Confidence 9999999999999999999999999999999986 1 222334799999999999974
No 4
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=32.68 E-value=19 Score=24.13 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=5.7
Q ss_pred cccCccccc
Q 025385 217 ENSEPTVQY 225 (253)
Q Consensus 217 KGLCP~CG~ 225 (253)
|-|||+||.
T Consensus 1 ~hlcpkcgv 9 (36)
T PF09151_consen 1 QHLCPKCGV 9 (36)
T ss_dssp --B-TTTSS
T ss_pred CccCCccCc
Confidence 458999998
No 5
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=25.22 E-value=24 Score=30.86 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=31.1
Q ss_pred CcHHHHHhhhhc-CCCcccCCCCC------------cccCcccccc----cCc-cCCCCCchHHHHHHHHH
Q 025385 194 LDSLVQDTIRLT-TAVKDTCSETC------------ENSEPTVQYI----GAK-NTASMAKRWGRLLELRN 246 (253)
Q Consensus 194 LdelI~EqIiLa-lPmK~LCSEDC------------KGLCP~CG~~----c~c-~~e~IDPR~AkLkkL~k 246 (253)
+.+-+.+.+-.. -++-.+| +.| --.||.||.. .+. .-+.+..|.+.|++.++
T Consensus 101 ~~~klk~~l~~e~~~~~Y~C-p~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 101 ELKKLKEQLEEEENNMFFFC-PNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred HHHHHHHHhhhccCCCEEEC-CCCCcEEeHHHHhhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 344444444433 3466667 446 5789999993 221 23556778888877665
No 6
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.61 E-value=34 Score=28.17 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=15.4
Q ss_pred cCCCcccCCCCCcc----------------cCccccc
Q 025385 205 TTAVKDTCSETCEN----------------SEPTVQY 225 (253)
Q Consensus 205 alPmK~LCSEDCKG----------------LCP~CG~ 225 (253)
..|++.-| +|.- .||.||.
T Consensus 66 ~vp~~~~C--~Cg~~~~~~~~~~~~~~~~~~CP~Cgs 100 (124)
T PRK00762 66 MIPVEIEC--ECGYEGVVDEDEIDHYAAVIECPVCGN 100 (124)
T ss_pred ecCeeEEe--eCcCcccccccchhccccCCcCcCCCC
Confidence 57999999 8952 4999996
No 7
>PF12151 MVL: Mannan-binding protein; InterPro: IPR021992 This domain family is found in bacteria, and is approximately 40 amino acids in length, There is a single completely conserved residue G that may be functionally important. The domain occurs in two types of proteins. In mannan binding proteins [], it forms a homodimeric molecule which complexes into a homo-octamer. In thiamidases it occurs without repeats but in the presence of other domains. MVL is distinct amongst other oligomannoside binding proteins in that it exhibits specificity for certain tetrasaccharides. Each molecule of MVL has four distinct carbohydrate binding sites. ; PDB: 1ZHQ_D 1ZHS_E.
Probab=22.05 E-value=20 Score=24.30 Aligned_cols=15 Identities=33% Similarity=0.900 Sum_probs=10.6
Q ss_pred CCCcCCCccccceee
Q 025385 74 SDGRWHGNWNSEYVV 88 (253)
Q Consensus 74 ~~g~~~~~w~~~~~~ 88 (253)
..|.|+|||.+..+.
T Consensus 15 ~gg~W~Gqw~~t~~~ 29 (37)
T PF12151_consen 15 LGGEWNGQWCTTVVG 29 (37)
T ss_dssp TTSEEEEEEEEEETT
T ss_pred hCCcccceeEEeccC
Confidence 456699999876543
No 8
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=21.18 E-value=70 Score=29.81 Aligned_cols=14 Identities=43% Similarity=1.175 Sum_probs=12.6
Q ss_pred cCCCccccceeecc
Q 025385 77 RWHGNWNSEYVVSL 90 (253)
Q Consensus 77 ~~~~~w~~~~~~sl 90 (253)
=|+|.|-|.|.+++
T Consensus 158 fwnG~WrS~w~~~~ 171 (271)
T PF01267_consen 158 FWNGRWRSEWTVDF 171 (271)
T ss_dssp TEEEEEEEEEEEEE
T ss_pred ccCceeeEEEEEec
Confidence 49999999999987
No 9
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.31 E-value=45 Score=28.36 Aligned_cols=10 Identities=10% Similarity=-0.004 Sum_probs=8.8
Q ss_pred CcccCccccc
Q 025385 216 CENSEPTVQY 225 (253)
Q Consensus 216 CKGLCP~CG~ 225 (253)
=+|.||.||+
T Consensus 20 l~grCP~CGe 29 (126)
T COG5349 20 LRGRCPRCGE 29 (126)
T ss_pred hcCCCCCCCC
Confidence 3799999999
No 10
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=20.02 E-value=43 Score=22.83 Aligned_cols=9 Identities=11% Similarity=-0.031 Sum_probs=5.8
Q ss_pred cccCccccc
Q 025385 217 ENSEPTVQY 225 (253)
Q Consensus 217 KGLCP~CG~ 225 (253)
.+|||+||.
T Consensus 2 ~~~CprC~k 10 (36)
T PF14787_consen 2 PGLCPRCGK 10 (36)
T ss_dssp --C-TTTSS
T ss_pred CccCcccCC
Confidence 489999998
Done!