Query 025385
Match_columns 253
No_of_seqs 87 out of 89
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:15:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9f_A LSL-150, hemolytic lect 52.8 11 0.00038 31.4 3.5 17 67-83 80-96 (150)
2 1l8d_A DNA double-strand break 20.8 24 0.00082 26.5 0.3 10 217-226 47-56 (112)
3 4akr_A F-actin-capping protein 18.8 58 0.002 29.4 2.5 47 77-143 162-208 (281)
4 1zhs_A MVL, mannan-binding lec 11.9 34 0.0012 27.4 -0.8 12 75-86 89-100 (113)
5 2fiy_A Protein FDHE homolog; F 10.9 69 0.0024 29.1 0.7 27 199-225 164-190 (309)
6 1fzc_A Fibrin; blood coagulati 10.2 80 0.0028 24.2 0.7 8 215-222 50-57 (87)
7 3aa0_A F-actin-capping protein 9.8 69 0.0023 28.7 0.3 15 78-92 169-183 (286)
8 4dny_A Metalloprotease STCE; m 9.6 86 0.003 25.4 0.8 46 31-80 16-66 (126)
9 2apo_B Ribosome biogenesis pro 8.8 3.1E+02 0.011 19.3 3.4 30 217-246 18-50 (60)
10 4g0i_A Protein YQJG; glutathio 8.3 1E+02 0.0036 28.0 0.8 9 75-83 6-14 (328)
No 1
>2y9f_A LSL-150, hemolytic lectin LSLA; sugar binding protein; 1.47A {Laetiporus sulphureus} PDB: 2y9g_A*
Probab=52.75 E-value=11 Score=31.43 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=13.1
Q ss_pred ceEEecCCCCcCCCccc
Q 025385 67 PLITVSPSDGRWHGNWN 83 (253)
Q Consensus 67 ~li~~~~~~g~~~~~w~ 83 (253)
|-+-....||||.|+|=
T Consensus 80 p~vG~~d~Dgky~dnwF 96 (150)
T 2y9f_A 80 PYVGQIDGDGRYPDNWF 96 (150)
T ss_dssp SSEEEESSSSCSGGGCB
T ss_pred CccceeCCCCccccccE
Confidence 33445789999999995
No 2
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.76 E-value=24 Score=26.53 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=8.6
Q ss_pred cccCcccccc
Q 025385 217 ENSEPTVQYI 226 (253)
Q Consensus 217 KGLCP~CG~~ 226 (253)
.|.||+||..
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 6789999994
No 3
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=18.82 E-value=58 Score=29.35 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=27.6
Q ss_pred cCCCccccceeeccccccccccccCCcccccCCCcccceEEEEEEEEecCCeEEEEEEEEEEEeecc
Q 025385 77 RWHGNWNSEYVVSLKQLRLADLIEDDDHLHQHKNKDAQVSINLSIQKHASFGFSVDGRIITSFSRKC 143 (253)
Q Consensus 77 ~~~~~w~~~~~~sl~~l~l~d~~~~~~~l~~~~~k~apV~V~l~V~k~~g~~l~V~G~I~t~ve~~C 143 (253)
=|+|.|-|+|.+++.. . .+.|.++|.|.-. -+|+=+|.|+-.....+
T Consensus 162 FwnGrWrS~w~~~~~~-----------~-------~~~l~~~G~I~V~--vHYyEDGNVqL~s~k~~ 208 (281)
T 4akr_A 162 FYSGRWRSVWTCTFKP-----------G-------SGNVTSNGKVQVN--VHYFEDGNVQLNTVTQK 208 (281)
T ss_dssp TEEEEEEEEEEEEECT-----------T-------SSEEEEEEEEEEE--EEECSSEEEEEEEEEEE
T ss_pred ccCCceEEEEEEEecC-----------C-------CCeEEECCEEEEE--EEEeecceEEEEecccc
Confidence 4999999999887531 1 1234444655433 35666666665555544
No 4
>1zhs_A MVL, mannan-binding lectin; HIV-1, carbohydrate binding, sugar binding protein; HET: NAG BMA MAN; 1.80A {Microcystis viridis} PDB: 1zhq_A*
Probab=11.95 E-value=34 Score=27.44 Aligned_cols=12 Identities=17% Similarity=0.662 Sum_probs=9.4
Q ss_pred CCcCCCccccce
Q 025385 75 DGRWHGNWNSEY 86 (253)
Q Consensus 75 ~g~~~~~w~~~~ 86 (253)
.|+|+|||.+..
T Consensus 89 gg~W~GQW~t~v 100 (113)
T 1zhs_A 89 GAEFTGQWRTIV 100 (113)
T ss_dssp TSEEEEEEEEEE
T ss_pred cCcccceeeEec
Confidence 467999998764
No 5
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=10.91 E-value=69 Score=29.10 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=15.9
Q ss_pred HHhhhhcCCCcccCCCCCcccCccccc
Q 025385 199 QDTIRLTTAVKDTCSETCENSEPTVQY 225 (253)
Q Consensus 199 ~EqIiLalPmK~LCSEDCKGLCP~CG~ 225 (253)
..++.-.+|.+.+=.-.=+|.||+||.
T Consensus 164 ~~~~a~~l~~~~~~~~~~~~~CPvCGs 190 (309)
T 2fiy_A 164 WSHWLLGLEEGAVVETESRTLCPACGS 190 (309)
T ss_dssp HHHHHHTCCTTCSCCCTTCSSCTTTCC
T ss_pred HHHHHHhCCccccCccccCCCCCCCCC
Confidence 445555565443111134899999998
No 6
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=10.21 E-value=80 Score=24.20 Aligned_cols=8 Identities=25% Similarity=0.551 Sum_probs=7.0
Q ss_pred CCcccCcc
Q 025385 215 TCENSEPT 222 (253)
Q Consensus 215 DCKGLCP~ 222 (253)
.|||+|..
T Consensus 50 sCKGSCar 57 (87)
T 1fzc_A 50 SCRGSCSR 57 (87)
T ss_dssp TTTTTBSC
T ss_pred hccchHHH
Confidence 69999987
No 7
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=9.81 E-value=69 Score=28.70 Aligned_cols=15 Identities=33% Similarity=1.094 Sum_probs=12.6
Q ss_pred CCCccccceeecccc
Q 025385 78 WHGNWNSEYVVSLKQ 92 (253)
Q Consensus 78 ~~~~w~~~~~~sl~~ 92 (253)
|+|.|.|.|++++..
T Consensus 169 w~G~W~Si~~~~v~~ 183 (286)
T 3aa0_A 169 WNGRWRSEWKFTITP 183 (286)
T ss_dssp EEEEEEEEEEEEEET
T ss_pred cCceeeeEEEEEecc
Confidence 999999999887654
No 8
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=9.64 E-value=86 Score=25.43 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=25.1
Q ss_pred ceeeccCCcc-eeee----ccccCCCCCCCcccccCCCCCCceEEecCCCCcCCC
Q 025385 31 FKLVPHHNSK-IYAA----SFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHG 80 (253)
Q Consensus 31 ~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 80 (253)
..|.|++.+. +.++ ++-+ +.+.+++-.. =...-+|.|.++||.|..
T Consensus 16 ~~~~~~~~~~~~i~s~a~l~~~s-d~sg~~l~~~---L~~~d~V~v~t~DG~W~r 66 (126)
T 4dny_A 16 IDFTPHNGTKKIINTVAEVNKLS-DASGSSIHSH---LTNNALVEIHTANGRWVR 66 (126)
T ss_dssp CCCCCSSSCEEEECSHHHHHGGG-CTTCHHHHHH---HTSCSEEEEEEETTBCCS
T ss_pred cccccCCCceeeEechhhhhhcc-CCchHHHHHH---hccCCEEEEEecCCceEc
Confidence 5666776553 2222 1222 3333333322 234568999999999654
No 9
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=8.76 E-value=3.1e+02 Score=19.34 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=16.5
Q ss_pred cccCcccccc-cCc--cCCCCCchHHHHHHHHH
Q 025385 217 ENSEPTVQYI-GAK--NTASMAKRWGRLLELRN 246 (253)
Q Consensus 217 KGLCP~CG~~-c~c--~~e~IDPR~AkLkkL~k 246 (253)
|..||.||.. ..- .+.+.|-++.+---.+|
T Consensus 18 k~~CP~CG~~T~~~hParfSp~Dky~~yR~~~k 50 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLK 50 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHHH
T ss_pred cccCcCCCCcCCCCCCCCCCCCcchHHHHHHHH
Confidence 4567777773 211 24566777766444433
No 10
>4g0i_A Protein YQJG; glutathionyl-hydroquinone reductase, oxidoreductase; HET: MES; 2.05A {Escherichia coli} PDB: 3r3e_A* 4g0k_A* 4g0l_A*
Probab=8.27 E-value=1e+02 Score=27.96 Aligned_cols=9 Identities=56% Similarity=1.586 Sum_probs=8.2
Q ss_pred CCcCCCccc
Q 025385 75 DGRWHGNWN 83 (253)
Q Consensus 75 ~g~~~~~w~ 83 (253)
||+|+++|.
T Consensus 6 ~g~w~~~w~ 14 (328)
T 4g0i_A 6 DGVWHDTWY 14 (328)
T ss_dssp SSCBCSSCT
T ss_pred CcEeeeecc
Confidence 799999995
Done!