Query 025385
Match_columns 253
No_of_seqs 87 out of 89
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 09:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqga3 g.41.1.1 (A:139-173) M 66.2 1.5 0.00011 27.1 1.9 9 217-225 2-10 (35)
2 d1pfva3 g.41.1.1 (A:141-175) M 48.8 3.3 0.00024 25.4 1.4 9 217-225 2-10 (35)
3 d1pvma3 g.41.13.1 (A:143-178) 35.1 5.6 0.00041 24.1 0.8 9 217-225 1-9 (36)
4 d1cl4a_ g.40.1.1 (A:) Nucleoca 27.1 8.7 0.00063 23.1 0.7 8 218-225 3-10 (32)
5 d2ey4e1 g.41.16.1 (E:4-55) Rib 21.7 39 0.0029 21.9 3.3 35 218-252 15-52 (52)
6 d1dsva_ g.40.1.1 (A:) Nucleic 20.2 14 0.001 22.0 0.6 8 218-225 3-10 (31)
7 d1x3ha2 g.39.1.3 (A:43-74) Leu 18.0 19 0.0014 21.5 0.9 10 142-151 1-10 (32)
8 d2bi6h1 g.3.12.1 (H:8-31) Brom 17.3 23 0.0017 19.9 1.1 13 214-226 5-17 (26)
9 d1ea9c2 b.71.1.1 (C:504-583) M 16.4 45 0.0033 21.9 2.8 52 30-84 1-53 (80)
10 d1u5sb2 g.39.1.3 (B:103-137) P 15.9 22 0.0016 21.5 0.8 12 141-152 1-12 (35)
No 1
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=66.16 E-value=1.5 Score=27.05 Aligned_cols=9 Identities=11% Similarity=-0.045 Sum_probs=8.1
Q ss_pred cccCccccc
Q 025385 217 ENSEPTVQY 225 (253)
Q Consensus 217 KGLCP~CG~ 225 (253)
+|-||.||+
T Consensus 2 ~G~CP~C~~ 10 (35)
T d1rqga3 2 IGTCPYCGA 10 (35)
T ss_dssp CSBCSSSCC
T ss_pred eEECCCCCC
Confidence 689999998
No 2
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=48.85 E-value=3.3 Score=25.41 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=8.2
Q ss_pred cccCccccc
Q 025385 217 ENSEPTVQY 225 (253)
Q Consensus 217 KGLCP~CG~ 225 (253)
+|-||.|++
T Consensus 2 ~G~CP~C~~ 10 (35)
T d1pfva3 2 KGTCPKCKS 10 (35)
T ss_dssp EEECTTTCC
T ss_pred eeECCCCCC
Confidence 589999999
No 3
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=35.08 E-value=5.6 Score=24.13 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=7.7
Q ss_pred cccCccccc
Q 025385 217 ENSEPTVQY 225 (253)
Q Consensus 217 KGLCP~CG~ 225 (253)
|-|||+||.
T Consensus 1 ~hlcpkcgv 9 (36)
T d1pvma3 1 QHLCPKCGV 9 (36)
T ss_dssp CCBCTTTSS
T ss_pred CccCCccCc
Confidence 469999998
No 4
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=27.06 E-value=8.7 Score=23.07 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=7.5
Q ss_pred ccCccccc
Q 025385 218 NSEPTVQY 225 (253)
Q Consensus 218 GLCP~CG~ 225 (253)
||||+|..
T Consensus 3 ~lCPrC~k 10 (32)
T d1cl4a_ 3 GLCPRCKR 10 (32)
T ss_dssp CSCSSCSS
T ss_pred ccCccccC
Confidence 89999988
No 5
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.71 E-value=39 Score=21.95 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=20.9
Q ss_pred ccCcccccc-cCc--cCCCCCchHHHHHHHHHhhhcCC
Q 025385 218 NSEPTVQYI-GAK--NTASMAKRWGRLLELRNTQLYGM 252 (253)
Q Consensus 218 GLCP~CG~~-c~c--~~e~IDPR~AkLkkL~k~~~~~~ 252 (253)
..||.||.. ..- -+.+.|-++++.--.+|..+.|+
T Consensus 15 ~~CP~CG~~t~~a~ParfSPeDky~~yRr~lKkr~~~~ 52 (52)
T d2ey4e1 15 EVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGI 52 (52)
T ss_dssp SBCTTTCCBCEESSCCCCCTTCTTHHHHHHHHHHHHTC
T ss_pred ccCcCCCCcccccCCCCCCCCcccHHHHHHHHHHhcCC
Confidence 345555552 111 14667777888777777777664
No 6
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=20.24 E-value=14 Score=21.97 Aligned_cols=8 Identities=13% Similarity=0.090 Sum_probs=7.4
Q ss_pred ccCccccc
Q 025385 218 NSEPTVQY 225 (253)
Q Consensus 218 GLCP~CG~ 225 (253)
||||+|..
T Consensus 3 ~lCPrC~k 10 (31)
T d1dsva_ 3 GLCPRCKK 10 (31)
T ss_dssp CBCTTTCS
T ss_pred ccCccccC
Confidence 89999988
No 7
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.99 E-value=19 Score=21.46 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=8.9
Q ss_pred ccCccccccc
Q 025385 142 KCSYCSSPYC 151 (253)
Q Consensus 142 ~CdRCLkpf~ 151 (253)
+|..|.+||.
T Consensus 1 VC~~C~~PF~ 10 (32)
T d1x3ha2 1 VCGDCFTSFS 10 (32)
T ss_dssp BCSSSCCBSC
T ss_pred CcCccCCcCC
Confidence 5999999996
No 8
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=17.27 E-value=23 Score=19.87 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=10.9
Q ss_pred CCCcccCcccccc
Q 025385 214 ETCENSEPTVQYI 226 (253)
Q Consensus 214 EDCKGLCP~CG~~ 226 (253)
.||-|.|-+|.+.
T Consensus 5 sdcpgfcktckae 17 (26)
T d2bi6h1 5 SDCPGFCKTCKAE 17 (26)
T ss_dssp SSCCTTCSSBCCB
T ss_pred ccCchHHHHHHHH
Confidence 4899999999873
No 9
>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Probab=16.42 E-value=45 Score=21.93 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=32.8
Q ss_pred cceeeccC-CcceeeeccccCCCCCCCcccccCCCCCCceEEecCCCCcCCCcccc
Q 025385 30 SFKLVPHH-NSKIYAASFKKNIDSSQPQIVKKSSKIPRPLITVSPSDGRWHGNWNS 84 (253)
Q Consensus 30 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~~w~~ 84 (253)
+|+||.-+ |.+++|-.++.. ...-++.-|.|..+. -|++...+|.|.+-|+.
T Consensus 1 sf~~L~a~~d~~v~ay~R~~~--~e~vlVv~N~S~~~~-tv~lp~~~~~~~~l~~g 53 (80)
T d1ea9c2 1 TFKFLTAEKNSRQIAYLREDD--QDTILVVMNNDKAGH-TLTLPVRHAQWTHLWQD 53 (80)
T ss_dssp CCCCSBCCSSCCEEEEEEECS--SCEEEEEEECSSSCE-EEEEECCSSSCCEEBST
T ss_pred CeEEEecCCCCCEEEEEEecC--CCEEEEEEECCCCCE-EEEecCCCCeEEEeecC
Confidence 57888664 557777665553 356677777776654 46776666666555543
No 10
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.93 E-value=22 Score=21.50 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=9.7
Q ss_pred eccCcccccccc
Q 025385 141 RKCSYCSSPYCK 152 (253)
Q Consensus 141 ~~CdRCLkpf~~ 152 (253)
..|.+|-+||--
T Consensus 1 FvCA~CekPF~G 12 (35)
T d1u5sb2 1 FVCAKCEKPFLG 12 (35)
T ss_dssp CBCTTTCCBCSS
T ss_pred CcccccCCccCC
Confidence 379999999953
Done!