Query 025386
Match_columns 253
No_of_seqs 337 out of 1363
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 99.9 2.7E-21 9.1E-26 144.7 13.7 90 152-249 4-93 (95)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-21 5.7E-26 148.7 11.4 80 153-240 19-98 (99)
3 1x5u_A Splicing factor 3B subu 99.9 9E-21 3.1E-25 144.5 12.8 92 151-250 13-104 (105)
4 2dng_A Eukaryotic translation 99.8 1.8E-20 6.2E-25 142.7 13.4 94 148-251 10-103 (103)
5 2d9p_A Polyadenylate-binding p 99.8 2.5E-20 8.6E-25 141.7 14.1 88 150-247 12-99 (103)
6 1x5s_A Cold-inducible RNA-bind 99.8 1E-20 3.5E-25 143.5 11.9 86 152-245 11-96 (102)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.5E-21 3.3E-25 143.7 11.5 89 152-248 11-99 (102)
8 2dgs_A DAZ-associated protein 99.8 2.5E-20 8.5E-25 140.8 13.5 88 152-248 9-96 (99)
9 2cq0_A Eukaryotic translation 99.8 2.5E-20 8.6E-25 141.7 13.4 85 152-244 14-98 (103)
10 2cpz_A CUG triplet repeat RNA- 99.8 2.1E-20 7.3E-25 145.0 12.8 86 152-245 24-109 (115)
11 2dnm_A SRP46 splicing factor; 99.8 1.7E-20 5.7E-25 142.7 11.5 86 152-245 12-97 (103)
12 3s8s_A Histone-lysine N-methyl 99.8 2E-20 6.8E-25 145.6 12.1 81 153-241 6-86 (110)
13 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-20 9.4E-25 141.9 12.5 90 149-247 11-100 (104)
14 2cpe_A RNA-binding protein EWS 99.8 2.6E-20 8.8E-25 143.9 12.5 88 152-247 14-109 (113)
15 2cph_A RNA binding motif prote 99.8 4.2E-20 1.4E-24 141.1 13.4 86 152-245 14-101 (107)
16 1x5t_A Splicing factor 3B subu 99.8 1.2E-20 4.1E-25 141.4 10.0 86 153-246 5-91 (96)
17 1x4a_A Splicing factor, argini 99.8 4.8E-20 1.7E-24 141.7 13.6 83 152-245 21-103 (109)
18 2dgp_A Bruno-like 4, RNA bindi 99.8 1.8E-20 6.2E-25 143.0 11.1 88 151-246 11-101 (106)
19 2la6_A RNA-binding protein FUS 99.8 3.4E-20 1.2E-24 140.2 12.3 84 148-239 8-99 (99)
20 1whw_A Hypothetical protein ri 99.8 4.2E-20 1.4E-24 139.3 12.6 86 152-245 7-92 (99)
21 1u6f_A Tcubp1, RNA-binding pro 99.8 4.3E-20 1.5E-24 147.6 13.2 87 150-244 39-125 (139)
22 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.8E-20 2.3E-24 139.3 13.4 84 152-245 14-97 (103)
23 1x4h_A RNA-binding protein 28; 99.8 6.9E-20 2.4E-24 140.7 13.5 87 151-245 13-105 (111)
24 2cqc_A Arginine/serine-rich sp 99.8 4.9E-20 1.7E-24 137.6 12.3 82 151-240 13-94 (95)
25 2cq3_A RNA-binding protein 9; 99.8 1.3E-19 4.4E-24 137.8 14.5 84 152-245 14-97 (103)
26 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.4E-20 1.2E-24 136.3 10.8 82 152-241 5-86 (87)
27 2fy1_A RNA-binding motif prote 99.8 4.7E-20 1.6E-24 144.3 12.0 83 151-242 5-87 (116)
28 3ex7_B RNA-binding protein 8A; 99.8 2.7E-20 9.4E-25 146.4 10.7 83 152-242 21-103 (126)
29 2do4_A Squamous cell carcinoma 99.8 1E-19 3.5E-24 137.6 13.5 83 152-243 16-98 (100)
30 2cpf_A RNA binding motif prote 99.8 4.2E-20 1.4E-24 139.1 11.2 87 153-244 5-91 (98)
31 2dgv_A HnRNP M, heterogeneous 99.8 5.7E-20 2E-24 136.6 11.6 83 152-244 7-89 (92)
32 2lkz_A RNA-binding protein 5; 99.8 1E-20 3.5E-25 143.9 7.5 80 153-240 9-94 (95)
33 2e5h_A Zinc finger CCHC-type a 99.8 6.6E-20 2.3E-24 136.8 11.6 79 153-239 16-94 (94)
34 2div_A TRNA selenocysteine ass 99.8 3.7E-20 1.3E-24 139.7 10.3 88 152-243 8-96 (99)
35 4f25_A Polyadenylate-binding p 99.8 4.2E-20 1.4E-24 144.1 10.9 81 153-243 5-85 (115)
36 2fc8_A NCL protein; structure 99.8 1.2E-19 3.9E-24 137.6 13.0 89 151-250 13-101 (102)
37 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-19 8.5E-24 136.5 14.5 87 152-244 14-100 (105)
38 2cpi_A CCR4-NOT transcription 99.8 9.9E-20 3.4E-24 141.0 12.4 86 152-242 14-102 (111)
39 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.8E-20 1.6E-24 134.9 10.1 80 152-239 6-85 (85)
40 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-19 4.7E-24 140.3 13.1 84 151-242 13-96 (115)
41 2do0_A HnRNP M, heterogeneous 99.8 2.7E-19 9.1E-24 138.2 14.6 82 152-242 14-95 (114)
42 3md1_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 131.8 11.6 81 153-241 1-81 (83)
43 2x1f_A MRNA 3'-END-processing 99.8 1E-19 3.5E-24 136.8 10.9 82 153-242 2-83 (96)
44 2khc_A Testis-specific RNP-typ 99.8 9.5E-20 3.2E-24 141.8 11.0 81 151-239 38-118 (118)
45 1p27_B RNA-binding protein 8A; 99.8 1E-19 3.5E-24 138.8 11.0 84 152-243 22-105 (106)
46 2lxi_A RNA-binding protein 10; 99.8 1.2E-20 4E-25 141.7 5.4 81 153-241 1-83 (91)
47 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.8E-19 6.1E-24 147.1 12.6 83 152-242 38-120 (156)
48 4a8x_A RNA-binding protein wit 99.8 1.2E-19 4.2E-24 133.4 10.2 85 153-244 4-88 (88)
49 2ywk_A Putative RNA-binding pr 99.8 1.1E-19 3.7E-24 135.9 10.0 80 152-240 15-94 (95)
50 2kxn_B Transformer-2 protein h 99.8 1.5E-19 5.3E-24 144.2 11.2 85 151-243 44-128 (129)
51 2dnq_A RNA-binding protein 4B; 99.8 3.4E-19 1.2E-23 132.4 12.2 80 152-247 7-86 (90)
52 2fc9_A NCL protein; structure 99.8 4E-19 1.4E-23 134.6 12.5 81 152-244 14-94 (101)
53 3ulh_A THO complex subunit 4; 99.8 3E-19 1E-23 136.5 11.9 80 152-240 28-107 (107)
54 3p5t_L Cleavage and polyadenyl 99.8 4.2E-20 1.4E-24 137.7 6.8 82 154-243 2-85 (90)
55 2dh8_A DAZ-associated protein 99.8 1.8E-19 6.2E-24 137.4 10.5 86 152-246 15-100 (105)
56 1wez_A HnRNP H', FTP-3, hetero 99.8 2.5E-19 8.5E-24 137.4 11.2 81 153-244 15-95 (102)
57 1x4e_A RNA binding motif, sing 99.8 5.6E-20 1.9E-24 135.0 7.3 81 152-240 4-84 (85)
58 2jrs_A RNA-binding protein 39; 99.8 3.4E-19 1.2E-23 137.7 11.9 83 151-241 24-106 (108)
59 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-19 5.7E-24 138.7 10.1 84 152-243 25-108 (110)
60 2cqp_A RNA-binding protein 12; 99.8 1.3E-19 4.3E-24 136.4 9.1 82 153-242 15-96 (98)
61 2dhg_A TRNA selenocysteine ass 99.8 2.4E-19 8.3E-24 136.3 10.7 82 152-242 8-91 (104)
62 2dgx_A KIAA0430 protein; RRM d 99.8 3.9E-19 1.4E-23 134.0 10.8 82 152-244 8-93 (96)
63 2cq1_A PTB-like protein L; RRM 99.8 1.4E-18 4.7E-23 133.5 13.9 81 151-245 13-95 (101)
64 2cpx_A Hypothetical protein FL 99.8 5.4E-19 1.9E-23 136.7 11.6 85 150-246 22-110 (115)
65 1x4c_A Splicing factor, argini 99.8 1.1E-18 3.8E-23 134.2 13.0 81 152-242 14-94 (108)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 1.5E-18 5.1E-23 131.8 13.5 82 152-243 14-95 (103)
67 2cqd_A RNA-binding region cont 99.8 1.1E-18 3.8E-23 135.5 12.9 81 152-241 16-96 (116)
68 1x4b_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 137.8 10.5 87 152-247 26-112 (116)
69 1x4d_A Matrin 3; structural ge 99.8 4.6E-19 1.6E-23 136.7 10.4 77 151-241 13-92 (102)
70 2err_A Ataxin-2-binding protei 99.8 3.4E-19 1.2E-23 137.7 9.5 81 151-241 27-107 (109)
71 2cpj_A Non-POU domain-containi 99.8 1.1E-18 3.7E-23 131.8 12.1 81 152-246 14-94 (99)
72 2dgt_A RNA-binding protein 30; 99.8 1.3E-18 4.4E-23 129.8 12.1 79 152-246 9-87 (92)
73 2ek1_A RNA-binding protein 12; 99.8 2E-19 6.7E-24 134.5 7.7 80 153-240 15-94 (95)
74 3ucg_A Polyadenylate-binding p 99.8 5.5E-19 1.9E-23 130.3 9.9 80 153-241 6-85 (89)
75 3ns6_A Eukaryotic translation 99.8 1.8E-19 6E-24 137.2 7.3 81 153-240 6-92 (100)
76 3r27_A HnRNP L, heterogeneous 99.8 5.4E-19 1.9E-23 136.0 10.1 76 152-241 20-97 (100)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.5E-19 2.2E-23 145.4 11.2 86 152-245 71-156 (165)
78 1wex_A Hypothetical protein (r 99.8 1.4E-18 4.6E-23 134.2 12.1 79 152-244 14-94 (104)
79 2jwn_A Embryonic polyadenylate 99.8 7.2E-19 2.5E-23 137.9 10.7 82 153-243 36-117 (124)
80 2cq4_A RNA binding motif prote 99.8 2E-19 6.7E-24 139.3 7.2 81 152-241 24-104 (114)
81 1wf1_A RNA-binding protein RAL 99.8 9.2E-19 3.2E-23 134.8 10.9 85 151-251 25-110 (110)
82 2m2b_A RNA-binding protein 10; 99.8 3.9E-19 1.4E-23 141.4 9.0 83 151-242 21-109 (131)
83 1why_A Hypothetical protein ri 99.8 1.3E-18 4.4E-23 131.0 11.3 77 153-243 17-95 (97)
84 1x5o_A RNA binding motif, sing 99.8 3.5E-18 1.2E-22 132.1 14.0 86 152-241 24-112 (114)
85 2dgw_A Probable RNA-binding pr 99.8 1.8E-18 6.3E-23 128.5 11.8 79 152-241 9-87 (91)
86 3s7r_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 127.6 11.2 78 152-238 10-87 (87)
87 1sjq_A Polypyrimidine tract-bi 99.8 4.7E-19 1.6E-23 137.5 8.4 79 152-244 15-95 (105)
88 2kt5_A RNA and export factor-b 99.8 1.9E-18 6.5E-23 135.8 11.9 83 151-242 33-115 (124)
89 3lqv_A PRE-mRNA branch site pr 99.8 1.5E-18 5.2E-23 134.3 11.0 82 149-241 4-85 (115)
90 1p1t_A Cleavage stimulation fa 99.8 7.2E-19 2.5E-23 133.5 8.8 82 153-242 8-89 (104)
91 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.1E-19 1.1E-23 135.6 6.7 82 150-241 16-98 (100)
92 2cpd_A Apobec-1 stimulating pr 99.8 5.9E-18 2E-22 127.8 13.7 76 152-243 14-91 (99)
93 2kn4_A Immunoglobulin G-bindin 99.8 2E-18 6.9E-23 140.6 11.8 85 152-244 69-153 (158)
94 3n9u_C Cleavage and polyadenyl 99.8 1E-18 3.5E-23 144.0 10.1 80 153-240 55-136 (156)
95 1wg5_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 130.6 12.4 82 152-243 14-96 (104)
96 2a3j_A U1 small nuclear ribonu 99.8 1E-18 3.5E-23 139.6 9.7 79 152-241 28-110 (127)
97 2nlw_A Eukaryotic translation 99.8 1.1E-18 3.8E-23 133.7 8.8 79 152-240 14-99 (105)
98 1s79_A Lupus LA protein; RRM, 99.8 1E-18 3.4E-23 134.5 8.5 78 153-240 11-88 (103)
99 2ad9_A Polypyrimidine tract-bi 99.8 2.8E-18 9.7E-23 135.9 11.2 80 152-245 30-111 (119)
100 2ytc_A PRE-mRNA-splicing facto 99.8 2.3E-18 7.7E-23 126.1 9.9 74 152-239 11-85 (85)
101 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.7E-18 9.3E-23 136.6 10.9 78 153-238 63-140 (140)
102 1fj7_A Nucleolin RBD1, protein 99.8 2.3E-19 7.9E-24 135.9 4.4 84 152-245 16-99 (101)
103 2cpy_A RNA-binding protein 12; 99.8 1.5E-18 5.1E-23 134.9 9.0 81 151-241 13-94 (114)
104 2lcw_A RNA-binding protein FUS 99.6 3.9E-20 1.3E-24 143.9 0.0 85 152-244 6-98 (116)
105 2dnp_A RNA-binding protein 14; 99.8 3.5E-18 1.2E-22 126.9 10.6 80 152-247 8-87 (90)
106 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-18 8E-23 133.1 10.0 83 151-242 23-105 (109)
107 1wel_A RNA-binding protein 12; 99.8 1.2E-18 4E-23 137.3 8.1 82 150-240 22-103 (124)
108 2lea_A Serine/arginine-rich sp 99.8 6.9E-19 2.3E-23 141.4 6.7 84 152-243 46-129 (135)
109 2e5i_A Heterogeneous nuclear r 99.8 7.4E-18 2.5E-22 134.4 12.5 76 154-241 26-102 (124)
110 1fjc_A Nucleolin RBD2, protein 99.8 2.3E-18 7.8E-23 129.0 8.9 80 152-244 15-94 (96)
111 1nu4_A U1A RNA binding domain; 99.8 1.5E-18 5.1E-23 130.1 7.7 80 152-242 7-90 (97)
112 2mss_A Protein (musashi1); RNA 99.8 1E-18 3.6E-23 125.2 6.5 75 155-238 1-75 (75)
113 2hvz_A Splicing factor, argini 99.8 2E-18 6.8E-23 130.7 8.4 76 154-242 1-76 (101)
114 2db1_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 134.2 9.9 79 152-240 16-97 (118)
115 1x4g_A Nucleolysin TIAR; struc 99.8 5.5E-18 1.9E-22 130.3 10.9 77 152-242 24-100 (109)
116 2dis_A Unnamed protein product 99.8 1.9E-18 6.3E-23 132.4 8.0 81 153-241 8-92 (109)
117 2kvi_A Nuclear polyadenylated 99.7 3.8E-18 1.3E-22 128.5 9.4 75 152-242 9-84 (96)
118 2xnq_A Nuclear polyadenylated 99.7 7E-18 2.4E-22 127.8 10.8 76 150-241 19-95 (97)
119 2cqh_A IGF-II mRNA-binding pro 99.7 3.9E-18 1.3E-22 127.2 9.2 81 152-247 7-89 (93)
120 4f02_A Polyadenylate-binding p 99.7 5.3E-18 1.8E-22 144.8 11.2 86 148-241 10-95 (213)
121 2krb_A Eukaryotic translation 99.7 1.3E-18 4.4E-23 127.0 6.2 74 153-235 1-80 (81)
122 2e5j_A Methenyltetrahydrofolat 99.7 7.1E-18 2.4E-22 127.0 10.4 78 152-242 18-95 (97)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.5E-18 5E-23 124.7 5.9 76 154-238 1-76 (77)
124 3q2s_C Cleavage and polyadenyl 99.7 2.9E-18 1E-22 149.4 8.8 80 152-239 67-148 (229)
125 2ki2_A SS-DNA binding protein 99.7 6.4E-19 2.2E-23 130.6 3.9 80 154-242 2-81 (90)
126 2jvo_A Nucleolar protein 3; nu 99.7 7.8E-18 2.7E-22 130.1 10.1 77 152-244 30-106 (108)
127 2dgu_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 126.6 11.6 73 153-241 11-83 (103)
128 1x5p_A Negative elongation fac 99.7 3.5E-17 1.2E-21 123.2 13.2 78 152-245 14-91 (97)
129 2jvr_A Nucleolar protein 3; RN 99.7 2.8E-18 9.4E-23 134.1 7.3 79 152-242 27-106 (111)
130 1x4f_A Matrin 3; structural ge 99.7 1.7E-17 5.8E-22 130.1 11.8 76 152-241 24-102 (112)
131 2la4_A Nuclear and cytoplasmic 99.7 5.5E-18 1.9E-22 128.2 8.4 74 153-240 27-100 (101)
132 3egn_A RNA-binding protein 40; 99.7 6.2E-18 2.1E-22 136.0 9.0 85 150-245 42-134 (143)
133 2f3j_A RNA and export factor b 99.7 2.6E-17 9E-22 138.1 13.2 83 150-241 85-167 (177)
134 2hgl_A HNRPF protein, heteroge 99.7 6.9E-18 2.4E-22 136.4 9.0 79 152-240 43-124 (136)
135 2wbr_A GW182, gawky, LD47780P; 99.7 8.9E-18 3E-22 126.3 8.2 73 153-239 7-79 (89)
136 3pgw_S U1-70K; protein-RNA com 99.7 2.3E-17 7.7E-22 156.5 12.7 83 151-241 100-182 (437)
137 1whx_A Hypothetical protein ri 99.7 1.4E-17 4.8E-22 129.2 9.2 75 153-241 10-84 (111)
138 2lmi_A GRSF-1, G-rich sequence 99.7 4.8E-18 1.6E-22 130.6 6.3 80 151-240 9-91 (107)
139 1sjr_A Polypyrimidine tract-bi 99.7 1.9E-17 6.4E-22 138.0 10.1 79 153-241 46-124 (164)
140 3md3_A Nuclear and cytoplasmic 99.7 7.7E-17 2.6E-21 129.8 13.0 81 152-240 86-166 (166)
141 2dnn_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 129.2 8.7 77 153-240 16-92 (109)
142 3zzy_A Polypyrimidine tract-bi 99.7 3.4E-17 1.2E-21 131.6 10.6 78 153-241 28-106 (130)
143 1fxl_A Paraneoplastic encephal 99.7 5.8E-17 2E-21 130.7 11.8 81 153-241 2-82 (167)
144 2i2y_A Fusion protein consists 99.7 3.2E-17 1.1E-21 132.8 10.2 77 152-241 72-148 (150)
145 1wg1_A KIAA1579 protein, homol 99.7 5E-17 1.7E-21 120.4 10.4 74 153-241 5-78 (88)
146 2hgn_A Heterogeneous nuclear r 99.7 3.4E-18 1.2E-22 138.7 4.2 80 152-242 45-124 (139)
147 1b7f_A Protein (SXL-lethal pro 99.7 4.8E-17 1.6E-21 131.7 10.3 83 152-242 2-84 (168)
148 2e44_A Insulin-like growth fac 99.7 5.5E-17 1.9E-21 121.4 9.8 78 152-241 14-92 (96)
149 3beg_B Splicing factor, argini 99.7 5.4E-17 1.8E-21 126.5 9.9 79 153-241 16-94 (115)
150 2qfj_A FBP-interacting repress 99.7 8.7E-17 3E-21 135.5 11.9 83 152-242 124-206 (216)
151 2e5g_A U6 snRNA-specific termi 99.7 1.2E-16 4.2E-21 119.5 10.8 77 153-243 8-84 (94)
152 1iqt_A AUF1, heterogeneous nuc 99.7 6.2E-18 2.1E-22 121.0 3.4 75 155-238 1-75 (75)
153 1l3k_A Heterogeneous nuclear r 99.7 8.6E-17 3E-21 133.5 10.8 82 152-242 103-184 (196)
154 2yh0_A Splicing factor U2AF 65 99.7 1.2E-16 4.2E-21 132.8 11.4 85 151-243 112-196 (198)
155 2cq2_A Hypothetical protein LO 99.7 4.5E-17 1.5E-21 128.1 8.2 80 152-241 24-106 (114)
156 2g4b_A Splicing factor U2AF 65 99.7 1.4E-16 4.8E-21 129.6 11.1 79 153-239 94-172 (172)
157 2hgm_A HNRPF protein, heteroge 99.7 5E-17 1.7E-21 129.8 8.0 78 152-240 41-120 (126)
158 4f02_A Polyadenylate-binding p 99.7 1.1E-16 3.9E-21 136.5 10.6 78 153-240 103-180 (213)
159 2xs2_A Deleted in azoospermia- 99.7 2.9E-17 9.9E-22 124.5 5.7 78 153-241 9-86 (102)
160 3tyt_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 136.5 10.4 76 153-241 4-80 (205)
161 1b7f_A Protein (SXL-lethal pro 99.7 4.3E-16 1.5E-20 126.0 12.8 80 153-238 89-168 (168)
162 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 129.9 6.0 77 153-239 23-103 (123)
163 3md3_A Nuclear and cytoplasmic 99.7 2.1E-16 7.2E-21 127.2 10.3 80 154-242 1-80 (166)
164 3nmr_A Cugbp ELAV-like family 99.7 2.4E-16 8.3E-21 128.1 10.6 82 152-239 94-175 (175)
165 2diu_A KIAA0430 protein; struc 99.7 1.7E-16 5.9E-21 120.6 8.8 71 153-241 8-84 (96)
166 3d2w_A TAR DNA-binding protein 99.7 2.2E-16 7.4E-21 117.9 9.2 75 152-241 10-84 (89)
167 1wf0_A TDP-43, TAR DNA-binding 99.7 8E-17 2.8E-21 119.0 6.7 77 153-244 5-81 (88)
168 1l3k_A Heterogeneous nuclear r 99.7 2.3E-16 7.8E-21 131.0 10.0 82 151-241 11-92 (196)
169 1fxl_A Paraneoplastic encephal 99.7 4.5E-16 1.6E-20 125.4 11.2 80 153-238 88-167 (167)
170 2bz2_A Negative elongation fac 99.7 3.9E-16 1.3E-20 123.1 9.7 76 151-242 37-112 (121)
171 3nmr_A Cugbp ELAV-like family 99.6 8E-16 2.7E-20 125.0 11.3 87 153-242 3-89 (175)
172 2cjk_A Nuclear polyadenylated 99.6 2.3E-16 7.8E-21 127.8 7.7 80 153-241 87-166 (167)
173 2qfj_A FBP-interacting repress 99.6 5E-16 1.7E-20 130.8 10.1 81 153-241 28-108 (216)
174 2dnl_A Cytoplasmic polyadenyla 99.6 3.6E-16 1.2E-20 121.4 8.2 70 153-223 8-80 (114)
175 3pgw_A U1-A; protein-RNA compl 99.6 1E-15 3.5E-20 134.9 11.8 80 152-242 8-91 (282)
176 2hzc_A Splicing factor U2AF 65 99.6 3.9E-16 1.3E-20 114.4 7.1 70 152-236 5-85 (87)
177 2pe8_A Splicing factor 45; RRM 99.6 2.5E-15 8.4E-20 116.0 10.8 82 152-240 7-93 (105)
178 3pgw_A U1-A; protein-RNA compl 99.6 4.1E-15 1.4E-19 131.0 13.3 76 152-240 206-282 (282)
179 1fje_B Nucleolin RBD12, protei 99.6 2.1E-15 7E-20 123.4 10.2 77 152-241 98-174 (175)
180 2j8a_A Histone-lysine N-methyl 99.6 8.8E-16 3E-20 123.2 7.6 79 154-240 3-95 (136)
181 2voo_A Lupus LA protein; RNA-b 99.6 3.5E-15 1.2E-19 126.6 10.2 78 153-240 109-186 (193)
182 2adc_A Polypyrimidine tract-bi 99.6 2.4E-15 8.1E-20 129.7 9.3 77 152-241 33-110 (229)
183 3u1l_A PRE-mRNA-splicing facto 99.6 1.9E-15 6.5E-20 133.0 8.3 76 152-241 133-229 (240)
184 2cjk_A Nuclear polyadenylated 99.6 1.8E-15 6.3E-20 122.4 7.6 78 153-240 3-80 (167)
185 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.2E-20 129.0 8.3 81 152-238 122-204 (205)
186 3smz_A Protein raver-1, ribonu 99.6 5.5E-15 1.9E-19 130.3 10.3 82 152-242 183-265 (284)
187 1qm9_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 121.8 10.6 77 152-241 119-197 (198)
188 2adc_A Polypyrimidine tract-bi 99.6 1.8E-14 6.1E-19 124.2 11.7 77 152-241 150-228 (229)
189 2dit_A HIV TAT specific factor 99.6 3.2E-14 1.1E-18 110.0 11.6 79 151-241 13-102 (112)
190 2ghp_A U4/U6 snRNA-associated 99.5 8.9E-15 3E-19 129.5 8.8 82 152-241 209-291 (292)
191 1qm9_A Polypyrimidine tract-bi 99.5 6.5E-15 2.2E-19 123.1 7.3 76 153-241 3-79 (198)
192 1fje_B Nucleolin RBD12, protei 99.5 1.7E-15 5.9E-20 123.9 3.4 82 150-241 10-91 (175)
193 3smz_A Protein raver-1, ribonu 99.5 2.5E-14 8.5E-19 126.1 10.9 82 153-242 95-176 (284)
194 3sde_A Paraspeckle component 1 99.5 3.5E-14 1.2E-18 124.8 9.6 75 152-240 21-95 (261)
195 3sde_A Paraspeckle component 1 99.5 8.8E-14 3E-18 122.1 11.1 83 153-241 96-179 (261)
196 3v4m_A Splicing factor U2AF 65 99.5 6.4E-14 2.2E-18 108.0 8.8 83 152-240 4-96 (105)
197 3tht_A Alkylated DNA repair pr 99.5 4.7E-14 1.6E-18 130.1 9.5 82 149-239 14-97 (345)
198 2ghp_A U4/U6 snRNA-associated 99.5 5.1E-14 1.7E-18 124.6 8.3 80 153-241 117-197 (292)
199 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.9E-19 112.0 3.5 73 157-238 19-103 (104)
200 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.5E-13 8.4E-18 104.1 11.0 76 153-243 10-92 (100)
201 2g4b_A Splicing factor U2AF 65 99.5 8.4E-14 2.9E-18 113.1 8.1 74 153-241 4-88 (172)
202 2yh0_A Splicing factor U2AF 65 99.5 1.2E-13 4E-18 114.7 8.4 74 153-241 4-88 (198)
203 3ue2_A Poly(U)-binding-splicin 99.5 3E-13 1E-17 106.5 10.0 84 152-240 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.3 7.8E-12 2.7E-16 97.9 10.0 79 149-239 3-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 2.5E-10 8.5E-15 85.9 8.6 71 154-241 8-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 4.5E-10 1.5E-14 88.9 9.8 72 153-238 18-93 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 1.2E-09 4.2E-14 82.6 4.8 69 154-239 16-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 5.4E-09 1.9E-13 89.2 9.1 70 165-239 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.7E-06 5.9E-11 67.0 7.7 70 153-236 21-95 (117)
210 1wey_A Calcipressin 1; structu 97.9 1E-05 3.5E-10 62.0 5.1 74 154-241 6-84 (104)
211 1whv_A Poly(A)-specific ribonu 97.7 0.00016 5.5E-09 54.7 8.5 55 153-219 16-70 (100)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00034 1.2E-08 52.3 10.1 87 154-241 2-88 (91)
213 3ctr_A Poly(A)-specific ribonu 97.1 0.00078 2.7E-08 51.1 5.6 54 154-219 7-60 (101)
214 2dhx_A Poly (ADP-ribose) polym 97.1 0.0017 5.8E-08 49.6 7.3 61 153-225 8-73 (104)
215 2l08_A Regulator of nonsense t 97.0 0.0019 6.4E-08 48.8 7.0 87 153-240 9-95 (97)
216 1wwh_A Nucleoporin 35, nucleop 96.5 0.0081 2.8E-07 46.9 7.1 63 153-226 24-86 (119)
217 2kn4_A Immunoglobulin G-bindin 96.2 0.0035 1.2E-07 49.8 3.9 35 182-221 2-36 (158)
218 3pq1_A Poly(A) RNA polymerase; 96.0 0.003 1E-07 60.0 2.8 55 152-215 52-106 (464)
219 2i2y_A Fusion protein consists 95.5 0.0053 1.8E-07 48.5 2.2 40 195-240 10-50 (150)
220 3d45_A Poly(A)-specific ribonu 93.5 0.18 6.2E-06 48.2 8.0 55 153-219 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 88.8 0.37 1.3E-05 38.1 3.9 72 153-226 7-89 (132)
222 2g0c_A ATP-dependent RNA helic 70.4 11 0.00037 25.8 5.8 68 155-239 2-75 (76)
223 4f25_A Polyadenylate-binding p 58.7 2 6.9E-05 31.8 0.0 17 153-169 97-113 (115)
224 4e8u_A Putative uncharacterize 34.1 68 0.0023 26.1 5.4 51 154-210 13-74 (172)
225 3fry_A Probable copper-exporti 29.4 98 0.0033 19.9 4.9 58 154-222 7-64 (73)
226 4eyt_A Telomerase associated p 27.4 1.8E+02 0.0063 21.3 8.2 56 153-219 12-67 (129)
227 2e7g_A Putative ribosome-bindi 27.3 1.4E+02 0.0048 22.7 6.0 36 177-219 43-79 (129)
228 2i9x_A Putative septation prot 24.2 97 0.0033 22.3 4.2 47 179-238 5-51 (87)
229 3fut_A Dimethyladenosine trans 22.3 59 0.002 27.9 3.3 32 154-186 111-142 (271)
230 3uzu_A Ribosomal RNA small sub 22.0 35 0.0012 29.5 1.7 33 154-186 115-147 (279)
231 4a4j_A Pacszia, cation-transpo 22.0 1.3E+02 0.0043 18.8 4.3 55 154-217 4-61 (69)
232 2zvk_U DNA polymerase ETA, pro 21.5 28 0.00095 19.4 0.6 7 21-27 2-8 (26)
233 2ia9_A Putative septation prot 21.0 1.2E+02 0.004 22.4 4.2 47 179-238 5-51 (100)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=144.72 Aligned_cols=90 Identities=24% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+++.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT---GRSKGYGFITFSDSECARRALEQLNGFELAG-----R 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSS---CCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 4689999999999999999999999999999999977654 7889999999999999999999999999998 5
Q ss_pred cEEEEeecCCCCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSVFGA 249 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g~g~ 249 (253)
.|+|+|++.+..++++++
T Consensus 76 ~l~V~~a~~~~~~~~~~~ 93 (95)
T 2dnz_A 76 PMRVGHVTERLDGGSGPS 93 (95)
T ss_dssp CCEEEESSCCCCCCCCCC
T ss_pred EEEEEEcccccCCCCCCC
Confidence 799999998755544433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=148.74 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-----r~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA---GHSLGYGFVNYVTAKDAERAINTLNGLRLQS-----KT 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCC---CcccccEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 578999999999999999999999999999999987654 8899999999999999999999999999998 68
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|+||++
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999974
No 3
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9e-21 Score=144.51 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=80.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 84 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT---GQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----- 84 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcCCcEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 34689999999999999999999999999999999877643 7899999999999999999999999999998
Q ss_pred ccEEEEeecCCCCCCCCCCC
Q 025386 231 KFLRLQFSRNPGPRSVFGAR 250 (253)
Q Consensus 231 r~L~V~~ak~~~~r~g~g~r 250 (253)
+.|+|+|++....+...+.+
T Consensus 85 ~~l~v~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 85 KPIRVNKASAHNKNLSGPSS 104 (105)
T ss_dssp CBCEEEETTTTSCCCCCCCC
T ss_pred eEEEEEECCCCCcCCCCCCC
Confidence 57999999987655444433
No 4
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=142.67 Aligned_cols=94 Identities=23% Similarity=0.441 Sum_probs=81.0
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 148 ~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
.+..+.++|||+|||+++++++|+++|++|+ |.+|+|+.++.+ |+++|||||+|.+.++|++|+ .||+..|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 82 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT---DKFKGFCYVEFDEVDSLKEAL-TYDGALLGD-- 82 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC---CccceEEEEEECCHHHHHHHH-hhCCCeECC--
Confidence 3444579999999999999999999999996 999999977654 889999999999999999999 899999998
Q ss_pred CCCccEEEEeecCCCCCCCCCCCC
Q 025386 228 PDSKFLRLQFSRNPGPRSVFGARG 251 (253)
Q Consensus 228 ~~~r~L~V~~ak~~~~r~g~g~rG 251 (253)
+.|+|+|++....+..+.++|
T Consensus 83 ---~~l~V~~a~~~~~~~~~~~~G 103 (103)
T 2dng_A 83 ---RSLRVDIAEGRKQDKSGPSSG 103 (103)
T ss_dssp ---EECEEEECCCCCCCCSSCCCC
T ss_pred ---eEEEEEEecCCCCCCCCCCCC
Confidence 689999999876555444443
No 5
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=141.73 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=78.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ . |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 82 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT---- 82 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----
Confidence 334789999999999999999999999999999999977 2 7889999999999999999999999999988
Q ss_pred CccEEEEeecCCCCCCCC
Q 025386 230 SKFLRLQFSRNPGPRSVF 247 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r~g~ 247 (253)
+.|+|+|++....+...
T Consensus 83 -~~l~V~~a~~~~~~~~~ 99 (103)
T 2d9p_A 83 -KPLYVALAQRKEERQSG 99 (103)
T ss_dssp -SBCEEEECSSCCCCCCC
T ss_pred -cEEEEEEecccccCCCC
Confidence 57999999987555443
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=143.47 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=77.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET---QRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-----R 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSS---CSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-----C
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 3689999999999999999999999999999999876544 7889999999999999999999999999988 5
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++......
T Consensus 83 ~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 83 QIRVDQAGKSSDNR 96 (102)
T ss_dssp CCEEEEEECCCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 79999999875443
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-21 Score=143.65 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSS---CCCSSEEEECCSSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3689999999999999999999999999999999876544 7889999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSVFG 248 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g~g 248 (253)
.|+|+|++....+....
T Consensus 83 ~l~V~~a~~~~~~~~~~ 99 (102)
T 2cqb_A 83 TIRVNLAKPMRIKESGP 99 (102)
T ss_dssp EEEEEECCCCCCCCCCC
T ss_pred EEEEEeCCCCCCCCCCC
Confidence 89999999876555443
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=140.79 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++ ||+..|.+ +
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK---QRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-----K 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTT---CSCCSEEEEEESSHHHHHHHHH-HCCCBSSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCCCceEEEEECCHHHHHHHHH-hCCCEECC-----e
Confidence 3689999999999999999999999999999999977544 7889999999999999999998 99999998 5
Q ss_pred cEEEEeecCCCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSVFG 248 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g~g 248 (253)
.|+|+|++.+..+....
T Consensus 80 ~l~V~~a~~~~~~~~~~ 96 (99)
T 2dgs_A 80 KVEVKRAEPRDSKSSGP 96 (99)
T ss_dssp BCEEEECCCCCCCCCCS
T ss_pred EEEEEECCCCcccCCCC
Confidence 79999999875554443
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=141.72 Aligned_cols=85 Identities=21% Similarity=0.456 Sum_probs=77.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT---GQSKGFAFISFHRREDAARAIAGVSGFGYDH-----L 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHcCCCeeCC-----c
Confidence 4689999999999999999999999999999999977644 8899999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++....+
T Consensus 86 ~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 86 ILNVEWAKPSTNS 98 (103)
T ss_dssp ECEEEESSCCCCS
T ss_pred EEEEEECCCCCCC
Confidence 8999999986543
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=2.1e-20 Score=145.01 Aligned_cols=86 Identities=21% Similarity=0.477 Sum_probs=78.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT---NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-----K 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---CCcCccEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 3689999999999999999999999999999999977644 8899999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....+.
T Consensus 96 ~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 96 RLKVQLKRSKNDSK 109 (115)
T ss_dssp ECEEECCCCSCCCC
T ss_pred EEEEEEcCCCCcCC
Confidence 89999999875443
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=142.73 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=77.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT---KAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS---CSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-----B
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCCCeEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 4689999999999999999999999999999999877644 7889999999999999999999999999998 5
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....+.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 84 ELRVQVARYGRRDL 97 (103)
T ss_dssp CCEEEECSSCCSCC
T ss_pred EEEEEECCcCCCCC
Confidence 79999999865443
No 12
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=145.56 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+|+|+.+..+ |+++|||||+|++.++|++|++.|||+.|.+ +.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-----r~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT---RKHLGLARVLFTSTRGAKETVKNLHLTSVMG-----NI 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC---CceeeEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 589999999999999999999999999999999987654 8899999999999999999999999999998 68
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|++++..
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999999754
No 13
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=141.92 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=78.2
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 149 p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+..+.++|||+|||+++++++|+++|++|| |.+|+|+.++.+ .|+++|||||+|.+.++|++|| .||+..|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g--- 83 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--- 83 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---
Confidence 344568999999999999999999999999 999999876542 1678899999999999999999 999999998
Q ss_pred CCccEEEEeecCCCCCCCC
Q 025386 229 DSKFLRLQFSRNPGPRSVF 247 (253)
Q Consensus 229 ~~r~L~V~~ak~~~~r~g~ 247 (253)
+.|+|+|++....+..+
T Consensus 84 --~~l~V~~a~~~~~~~~~ 100 (104)
T 1wi8_A 84 --KRIRVDVADQAQDKDSG 100 (104)
T ss_dssp --EECEEEECCCCCCCCCC
T ss_pred --cEEEEEEccCCCCCCCC
Confidence 68999999987555443
No 14
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=143.93 Aligned_cols=88 Identities=23% Similarity=0.373 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEE--------EEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 223 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~--------~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i 223 (253)
+.++|||+|||+++++++|+++|++||.|. .|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET---GKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTT---CSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCC---CCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 468999999999999999999999999998 6888876543 88999999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCCCCCCCC
Q 025386 224 DEDDPDSKFLRLQFSRNPGPRSVF 247 (253)
Q Consensus 224 ~g~~~~~r~L~V~~ak~~~~r~g~ 247 (253)
.+ +.|+|+|++....+..+
T Consensus 91 ~g-----~~l~V~~a~~~~~~~~~ 109 (113)
T 2cpe_A 91 QG-----SKLKVSLARKKPPMNSG 109 (113)
T ss_dssp TT-----EECEEECSSCCCCSTTC
T ss_pred CC-----CEEEEEECCCCCCCCCC
Confidence 98 68999999987555443
No 15
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.2e-20 Score=141.06 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeec-CCccCCCccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~-~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~ 229 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+ ++++|||||+|.+.++|++|++.| |+..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---- 86 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT---GAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---- 86 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSS---CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS----
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCC---CCcCceEEEEECCHHHHHHHHHHhccCCeECC----
Confidence 4689999999999999999999999999999999876 333 788999999999999999999999 9999998
Q ss_pred CccEEEEeecCCCCCC
Q 025386 230 SKFLRLQFSRNPGPRS 245 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r~ 245 (253)
+.|+|+|++......
T Consensus 87 -~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 87 -RRLVLEWADSEVTVQ 101 (107)
T ss_dssp -CBCEEEECCCCCCCC
T ss_pred -CEEEEEeCCCCCCCC
Confidence 579999999875443
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=141.39 Aligned_cols=86 Identities=13% Similarity=0.296 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEE-EEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~v-rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+++|||+|||+++++++|+++|++||.|.++ +|+.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT---GNSKGYAFINFASFDASDAAIEAMNGQYLCN-----R 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTT---CSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 6899999999999999999999999999999 88876443 7889999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSV 246 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g 246 (253)
.|+|+|++....+..
T Consensus 77 ~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 77 PITVSYAFKKDSKGS 91 (96)
T ss_dssp ECEEEESCCCCCCCC
T ss_pred EEEEEEecccCCCCC
Confidence 899999998755443
No 17
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=141.69 Aligned_cols=83 Identities=25% Similarity=0.480 Sum_probs=74.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++|+++|+++|++||.|.+|+|... ++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-----Y 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 4689999999999999999999999999999999643 4467899999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....++
T Consensus 90 ~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 90 RLRVEFPRSGRGTG 103 (109)
T ss_dssp ECEEECCCCCCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 89999999865443
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=1.8e-20 Score=143.04 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee---CCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM---DEDD 227 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i---~g~~ 227 (253)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.||+..+ .+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-- 85 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT---GMHKGCAFLTYCERESALKAQSALHEQKTLPGMN-- 85 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSS---CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC--
Confidence 34689999999999999999999999999999999877654 78899999999999999999999999987 54
Q ss_pred CCCccEEEEeecCCCCCCC
Q 025386 228 PDSKFLRLQFSRNPGPRSV 246 (253)
Q Consensus 228 ~~~r~L~V~~ak~~~~r~g 246 (253)
+.|+|+|++....+..
T Consensus 86 ---~~l~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 86 ---RPIQVKPADSESRGGS 101 (106)
T ss_dssp ---SCCEEEECCCCSCCCC
T ss_pred ---ceEEEEECCcccccCC
Confidence 6799999998755443
No 19
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=140.19 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=76.2
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEE--------EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025386 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 148 ~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
.++.+.++|||+|||+++++++|+++|++||.|.+ ++++.++.+ |+++|||||+|.+.++|++|++.||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT---CSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC---CCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34455799999999999999999999999999999 999877644 8899999999999999999999999
Q ss_pred CceeCCCCCCCccEEEEeec
Q 025386 220 GYRMDEDDPDSKFLRLQFSR 239 (253)
Q Consensus 220 G~~i~g~~~~~r~L~V~~ak 239 (253)
|..|.+ +.|+|+||+
T Consensus 85 g~~~~g-----~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSG-----NPIKVSFAT 99 (99)
T ss_dssp TCBSSS-----SBCEEEECC
T ss_pred CCEeCC-----cEEEEEecC
Confidence 999998 579999985
No 20
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=139.34 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT---KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-----R 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTT---CCCCSEEEEEESSHHHHHHHHHHTTTEESSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3689999999999999999999999999999999877643 7889999999999999999999999999998 5
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....+.
T Consensus 79 ~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 79 MLHVLPSTIKKEAS 92 (99)
T ss_dssp EEEEEECCCCSTTC
T ss_pred EEEEEEcCCCcccc
Confidence 79999999875443
No 21
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=147.65 Aligned_cols=87 Identities=21% Similarity=0.387 Sum_probs=78.8
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
+...++|||+|||+++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---- 111 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET---RQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---- 111 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT---TEEEEEEEEEESSHHHHHHHHHHTTTEECSS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC----
Confidence 345789999999999999999999999999999999977654 7899999999999999999999999999998
Q ss_pred CccEEEEeecCCCCC
Q 025386 230 SKFLRLQFSRNPGPR 244 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r 244 (253)
+.|+|+|++....+
T Consensus 112 -~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 112 -KRLKVALAASGHQR 125 (139)
T ss_dssp -CEEEEEESSCCCCC
T ss_pred -eEEEEEECCCCCCC
Confidence 57999999986443
No 22
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=139.32 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. .++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-----SNDPYCFVEFYEHRDAAAALAAMNGRKILG-----K 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-----SSCCEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-----CCCCEEEEEECCHHHHHHHHHHhCCCCcCC-----C
Confidence 468999999999999999999999999999999997753 357899999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++.+..+.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 84 EVKVNWATTPSSQK 97 (103)
T ss_dssp EEEEEECCCTTCCC
T ss_pred eEEEEECCCCcccc
Confidence 89999999875443
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=140.73 Aligned_cols=87 Identities=20% Similarity=0.370 Sum_probs=78.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc------CceeC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ------GYRMD 224 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln------G~~i~ 224 (253)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|| +..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT---EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34689999999999999999999999999999999977654 7889999999999999999999999 99998
Q ss_pred CCCCCCccEEEEeecCCCCCC
Q 025386 225 EDDPDSKFLRLQFSRNPGPRS 245 (253)
Q Consensus 225 g~~~~~r~L~V~~ak~~~~r~ 245 (253)
+ +.|+|+|++....+.
T Consensus 90 g-----~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 G-----RQLKVDLAVTRDEAA 105 (111)
T ss_dssp S-----CEEEEECCCCCCCCC
T ss_pred C-----EEEEEEECCCCccCC
Confidence 8 579999998865443
No 24
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=137.62 Aligned_cols=82 Identities=24% Similarity=0.326 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++++|||+|||+++++++|+++|++||.|.+|+++.++.+ ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 84 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDG----- 84 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS---SSEEEEEEEEESSHHHHHHHHHHHTTEEETT-----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 34689999999999999999999999999999999977654 7889999999999999999999999999998
Q ss_pred ccEEEEeecC
Q 025386 231 KFLRLQFSRN 240 (253)
Q Consensus 231 r~L~V~~ak~ 240 (253)
+.|+|+|+++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 6899999985
No 25
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=137.77 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+.. .++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVEG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-----TTCCEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCcEEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 468999999999999999999999999999999997652 367899999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....+.
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 84 KIEVNNATARVMTN 97 (103)
T ss_dssp ECEEEECCSSCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 89999999875443
No 26
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=136.33 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 4689999999999999999999999999999999977543 8899999999999999999999999999998 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|++..
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 8999999863
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=144.28 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
++.++|||+|||+++++++|+++|++||.|.+|+|+.++ + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----- 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-T---SKSRGFAFITFENPADAKNAAKDMNGKSLHG----- 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-T---TTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C---CCcccEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 346899999999999999999999999999999999776 2 8899999999999999999999999999998
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|+|++.+.
T Consensus 76 ~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 KAIKVEQAKKPS 87 (116)
T ss_dssp SBCEEEECCCSS
T ss_pred EEEEEEECCCCC
Confidence 579999998863
No 28
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.7e-20 Score=146.43 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=75.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 92 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-----Q 92 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---SSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCC-----e
Confidence 3689999999999999999999999999999999877543 7889999999999999999999999999988 5
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++...
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 79999998753
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=137.61 Aligned_cols=83 Identities=28% Similarity=0.524 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 86 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIKE-----N 86 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 368999999999999999999999999999999997762 8899999999999999999999999999998 5
Q ss_pred cEEEEeecCCCC
Q 025386 232 FLRLQFSRNPGP 243 (253)
Q Consensus 232 ~L~V~~ak~~~~ 243 (253)
.|+|+|++.+..
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 799999988654
No 30
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=139.09 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++++++|+++|++||.|.+|+|+.+......++++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-----HK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 5899999999999999999999999999999999765411014789999999999999999999999999998 68
Q ss_pred EEEEeecCCCCC
Q 025386 233 LRLQFSRNPGPR 244 (253)
Q Consensus 233 L~V~~ak~~~~r 244 (253)
|+|+|++.....
T Consensus 80 l~V~~a~~~~~~ 91 (98)
T 2cpf_A 80 LEVRISERATKP 91 (98)
T ss_dssp CEEECSSCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999886443
No 31
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=5.7e-20 Score=136.63 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.+. |+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSG-----R 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-----B
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 36899999999999999999999999999999998742 7889999999999999999999999999998 5
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++.+...
T Consensus 77 ~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 77 EIDVRIDRNASGP 89 (92)
T ss_dssp CCCCEECSCCSSC
T ss_pred EEEEEEcCCCCCC
Confidence 7999999986543
No 32
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=143.86 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCc--EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc----eeCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~--i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~----~i~g~ 226 (253)
-+||||+|||+++|+++|+++|++||. |.+|+++.++.+ |++||||||+|.+.++|++|++.|||. .|++
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t---g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT---QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS---SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC---CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 479999999999999999999999995 678998877654 889999999999999999999999997 4777
Q ss_pred CCCCccEEEEeecC
Q 025386 227 DPDSKFLRLQFSRN 240 (253)
Q Consensus 227 ~~~~r~L~V~~ak~ 240 (253)
|+|+|+||++
T Consensus 85 ----r~i~V~~Aks 94 (95)
T 2lkz_A 85 ----KTIGVDFAKS 94 (95)
T ss_dssp ----EEEEEEECCC
T ss_pred ----EEEEEEEccC
Confidence 7899999986
No 33
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=136.82 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=73.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+|+++.++.+ ++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 87 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDT---RKSKGVAFILFLDKDSAQNCTRAINNKQLFG-----RV 87 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSS---CCCTTCEEEEESCHHHHHHHHHHTTTEEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHcCCCeeCC-----cE
Confidence 589999999999999999999999999999999877654 7889999999999999999999999999998 68
Q ss_pred EEEEeec
Q 025386 233 LRLQFSR 239 (253)
Q Consensus 233 L~V~~ak 239 (253)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 34
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=139.66 Aligned_cols=88 Identities=22% Similarity=0.427 Sum_probs=77.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEE-EEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~-~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
++++|||+|||+++++++|+++|++||.|. +|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+... .
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~-~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT---GIPAGYCFVEFADLATAEKCLHKINGKPLPGATP-A 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS---CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS-C
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC---CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc-c
Confidence 468999999999999999999999999999 9999977654 8899999999999999999999999999998420 0
Q ss_pred ccEEEEeecCCCC
Q 025386 231 KFLRLQFSRNPGP 243 (253)
Q Consensus 231 r~L~V~~ak~~~~ 243 (253)
+.|+|+|++....
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 1299999988643
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=4.2e-20 Score=144.12 Aligned_cols=81 Identities=16% Similarity=0.292 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.+|||+|||+++|+++|+++|++||.|.+|+|+.++ +.+||||||+|.+.++|++||+.|||+.|.+ +.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-----~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 5789999999999999999999999999999999775 4578999999999999999999999999998 68
Q ss_pred EEEEeecCCCC
Q 025386 233 LRLQFSRNPGP 243 (253)
Q Consensus 233 L~V~~ak~~~~ 243 (253)
|+|++++....
T Consensus 75 i~V~~a~~~~~ 85 (115)
T 4f25_A 75 VFVGRFKSRKE 85 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCccc
Confidence 99999987543
No 36
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=137.63 Aligned_cols=89 Identities=26% Similarity=0.380 Sum_probs=75.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||+++++++|+++|+.|+ +|+++.++.+ ++++|||||+|.+.++|++||+.||+..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET---GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----- 81 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 3468999999999999999999999874 5666665543 7889999999999999999999999999998
Q ss_pred ccEEEEeecCCCCCCCCCCC
Q 025386 231 KFLRLQFSRNPGPRSVFGAR 250 (253)
Q Consensus 231 r~L~V~~ak~~~~r~g~g~r 250 (253)
+.|+|+|++....++++++.
T Consensus 82 ~~l~V~~a~~~~~~~~~~~~ 101 (102)
T 2fc8_A 82 NKVTLDWAKPKGEGGSGPSS 101 (102)
T ss_dssp EECEEEECCCCCSSSCSCCC
T ss_pred eEEEEEEecCCCCCCCCCCC
Confidence 67999999987655544443
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=2.5e-19 Score=136.46 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=77.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..|.+.. .+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~--~~ 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA--SS 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC--SS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC--Cc
Confidence 368999999999999999999999999999999997763 889999999999999999999999999998731 14
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++....+
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 6999999987544
No 38
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=140.98 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCCCCHHHHH---HhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~---~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.+......++++|||||+|++.++|++|++.|||+.|++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 35899999999999999999 999999999999998765432224677999999999999999999999999998
Q ss_pred CCccEEEEeecCCC
Q 025386 229 DSKFLRLQFSRNPG 242 (253)
Q Consensus 229 ~~r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 91 --r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 --RTLKASLGTTKY 102 (111)
T ss_dssp --EEEEEESCCCCS
T ss_pred --EEEEEEeccccc
Confidence 689999998864
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=4.8e-20 Score=134.94 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+++++.+..+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC---CccccEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 3689999999999999999999999999999999876543 7889999999999999999999999999998 6
Q ss_pred cEEEEeec
Q 025386 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
.|+|+|||
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 89999986
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.4e-19 Score=140.26 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=77.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++||+.|||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 84 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----- 84 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTCEETT-----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 34689999999999999999999999999999999977543 8899999999999999999999999999998
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 85 ~~l~V~~a~~~~ 96 (115)
T 2dgo_A 85 RQIRTNWATRKP 96 (115)
T ss_dssp EECEEEESSCCC
T ss_pred EEEEEEEccCCC
Confidence 689999998763
No 41
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=138.23 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=75.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.||++.|.+ +
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 84 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-----R 84 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-----C
Confidence 368999999999999999999999999999999997763 7899999999999999999999999999998 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++...
T Consensus 85 ~l~v~~a~~~~ 95 (114)
T 2do0_A 85 PMHVKMDERAL 95 (114)
T ss_dssp ECEEEECSCCC
T ss_pred EEEEEEcccCC
Confidence 89999998653
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.5e-19 Score=131.76 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.+|||+|||+++++++|+++|++||.|.+++++.+..+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----RP 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCccceEEEEECCHHHHHHHHHHhcCCeeCC-----cE
Confidence 368999999999999999999999999999999877544 8899999999999999999999999999988 68
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++..
T Consensus 73 l~v~~a~~~ 81 (83)
T 3md1_A 73 LRINWAAKL 81 (83)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCcC
Confidence 999999864
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1e-19 Score=136.82 Aligned_cols=82 Identities=21% Similarity=0.475 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQT---GRSKGYAFIEFRDLESSASAVRNLNGYQLGS-----RF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---CCBCSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 689999999999999999999999999999999877543 7889999999999999999999999999998 68
Q ss_pred EEEEeecCCC
Q 025386 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|+|++.+.
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 44
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=9.5e-20 Score=141.78 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=74.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 109 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQT---SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT----- 109 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSS---SCCCCEEEEEEESSHHHHHHHHHCCCCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCcCcEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 34689999999999999999999999999999999977544 7889999999999999999999999999998
Q ss_pred ccEEEEeec
Q 025386 231 KFLRLQFSR 239 (253)
Q Consensus 231 r~L~V~~ak 239 (253)
+.|+|+|+|
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 689999986
No 45
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=138.81 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-----Q 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CceeeEEEEEECCHHHHHHHHHHhcCCEECC-----c
Confidence 4689999999999999999999999999999999977654 7889999999999999999999999999998 5
Q ss_pred cEEEEeecCCCC
Q 025386 232 FLRLQFSRNPGP 243 (253)
Q Consensus 232 ~L~V~~ak~~~~ 243 (253)
.|+|+|++...+
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 799999987543
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=141.70 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCC-cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc-CceeCCCCCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln-G~~i~g~~~~~ 230 (253)
+++|||+|||+++||++|+++|++|| .|.+|+|+.++.+ |++||||||+|.+.++|++|++.|+ +..|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t---~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----- 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSS---GQSRGFAFVEFSHLQDATRWMEANQHSLNILG----- 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSS---CCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHhcCCCeEECC-----
Confidence 47999999999999999999999999 8999999877654 8899999999999999999999885 567887
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+||+..
T Consensus 73 r~i~V~~a~~~ 83 (91)
T 2lxi_A 73 QKVSMHYSDPK 83 (91)
T ss_dssp EEEEEECCCSC
T ss_pred EEEEEEEcCCC
Confidence 68999999874
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.8e-19 Score=147.07 Aligned_cols=83 Identities=24% Similarity=0.404 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++|+++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++||+.||+..|.+ +
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK---KTACGFCFVEYYSRADAENAMRYINGTRLDD-----R 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTSEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 4689999999999999999999999999999999977654 7889999999999999999999999999988 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++...
T Consensus 110 ~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 IIRTDWDAGFK 120 (156)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEECCCCC
Confidence 89999998753
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=133.40 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=76.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.+..+. ++++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 76 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHP--HLSKGYAYVEFENPDEAEKALKHMDGGQIDG-----QE 76 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEE--EEECSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCC--CCCCcEEEEEEecHHHHHHHHHHcCCCeECC-----eE
Confidence 4799999999999999999999999999999998766431 3478999999999999999999999999998 68
Q ss_pred EEEEeecCCCCC
Q 025386 233 LRLQFSRNPGPR 244 (253)
Q Consensus 233 L~V~~ak~~~~r 244 (253)
|+|++++.+.+|
T Consensus 77 l~v~~a~~~~~R 88 (88)
T 4a8x_A 77 ITATAVLAPWPR 88 (88)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887654
No 49
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=135.91 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYG-----R 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECC-----C
Confidence 368999999999999999999999999999999997763 7889999999999999999999999999998 6
Q ss_pred cEEEEeecC
Q 025386 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+|+|+++
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 899999975
No 50
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.5e-19 Score=144.21 Aligned_cols=85 Identities=27% Similarity=0.385 Sum_probs=77.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----- 115 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDG----- 115 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS---SCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 34689999999999999999999999999999999977644 7889999999999999999999999999998
Q ss_pred ccEEEEeecCCCC
Q 025386 231 KFLRLQFSRNPGP 243 (253)
Q Consensus 231 r~L~V~~ak~~~~ 243 (253)
+.|+|+|++...+
T Consensus 116 ~~l~V~~a~~~~p 128 (129)
T 2kxn_B 116 RRIRVDFSITKRP 128 (129)
T ss_dssp SCCEESCCSSSSC
T ss_pred EEEEEEEecCCCC
Confidence 5799999988654
No 51
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=132.41 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.||+..|.+ +
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHG-----V 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSS-----C
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCC-----c
Confidence 46899999999999999999999999999999987 1499999999999999999999999998 5
Q ss_pred cEEEEeecCCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSVF 247 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g~ 247 (253)
.|+|+|++....+..+
T Consensus 71 ~l~v~~a~~~~~~~~~ 86 (90)
T 2dnq_A 71 NINVEASKNKSKASSG 86 (90)
T ss_dssp BCEEECSSCCCCCCSS
T ss_pred EEEEEECCCCCCCCCC
Confidence 7999999987554433
No 52
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=134.58 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.| +++.+.. ++++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----GKSKGYAFIEFASFEDAKEALNSCNKREIEG-----R 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----SCBCSEEEEECSSHHHHHHHHHHTSSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----CCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-----e
Confidence 36899999999999999999999999977 4554422 7889999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++.+..+
T Consensus 82 ~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 82 AIRLELQGPRGSP 94 (101)
T ss_dssp EEEEEECSSCCCC
T ss_pred EEEEEEcCCCCCC
Confidence 8999999987543
No 53
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3e-19 Score=136.49 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLDG-----R 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 468999999999999999999999999999999997763 8899999999999999999999999999988 6
Q ss_pred cEEEEeecC
Q 025386 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+|+|+++
T Consensus 99 ~l~V~~a~s 107 (107)
T 3ulh_A 99 PMNIQLVTS 107 (107)
T ss_dssp ECEEEEECC
T ss_pred EEEEEEeCC
Confidence 899999864
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.2e-20 Score=137.66 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=70.2
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCC--cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~---g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g-----r 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHG-----Q 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT---CCEEEEEEECC-CHHHHHHHHHHGGGSCSSS-----C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC---CccCcEEEEEECCHHHHHHHHHHcCCCeeCC-----E
Confidence 5799999999999999999999999 9999999987654 8999999999999999999999999999998 5
Q ss_pred cEEEEeecCCCC
Q 025386 232 FLRLQFSRNPGP 243 (253)
Q Consensus 232 ~L~V~~ak~~~~ 243 (253)
.|+|++++.+..
T Consensus 74 ~i~V~~~~~~~~ 85 (90)
T 3p5t_L 74 NPVVTPSNKLEH 85 (90)
T ss_dssp CCEECCC-----
T ss_pred EEEEEECCCCcc
Confidence 799999988643
No 55
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=137.39 Aligned_cols=86 Identities=17% Similarity=0.326 Sum_probs=77.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++||+. |+..|.+ +
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-----~ 85 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT---NQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-----R 85 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSTTHHHHHHHH-CSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---CCcceEEEEEECCHHHHHHHHHh-CCCeECC-----E
Confidence 3689999999999999999999999999999999987644 88999999999999999999999 9999998 6
Q ss_pred cEEEEeecCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSV 246 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g 246 (253)
.|+|+|++....++.
T Consensus 86 ~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 86 NIDPKPCTPRGMQPS 100 (105)
T ss_dssp EEBCCCSCCSSCCTT
T ss_pred EEEEEEccCCCCCCC
Confidence 899999988754443
No 56
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=137.35 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++|| +++|+|+.+++ |+++|||||+|++.++|++|| .+|+..|.+ |.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-----r~ 83 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAM-AKDKANMQH-----RY 83 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHH-TTSSCCSSS-----SC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHH-HhCCCeECC-----cE
Confidence 58999999999999999999999999 55999987763 899999999999999999999 579999988 67
Q ss_pred EEEEeecCCCCC
Q 025386 233 LRLQFSRNPGPR 244 (253)
Q Consensus 233 L~V~~ak~~~~r 244 (253)
|+|.++..+...
T Consensus 84 i~V~~~~~~~~~ 95 (102)
T 1wez_A 84 VELFLNSTAGTS 95 (102)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999876433
No 57
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-20 Score=134.95 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT---NKCKGYGFVDFDSPSAAQKAVTALKASGVQA-----Q 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSS---CSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhcCCeEee-----E
Confidence 4689999999999999999999999999999999977644 7889999999999999999999999999988 5
Q ss_pred cEEEEeecC
Q 025386 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+++|+++
T Consensus 76 ~~~~~~~~s 84 (85)
T 1x4e_A 76 MAKQSGPSS 84 (85)
T ss_dssp SCCSSCCCC
T ss_pred EEeecCCCC
Confidence 688777653
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=137.69 Aligned_cols=83 Identities=23% Similarity=0.453 Sum_probs=76.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++++|||+|||+++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----- 95 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET---GRSKGYGFITFSDSECAKKALEQLNGFELAG----- 95 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTT---TEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 34689999999999999999999999999999999977544 8899999999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 96 ~~l~V~~a~~k 106 (108)
T 2jrs_A 96 RPMKVGHVTER 106 (108)
T ss_dssp SCCEEECSCSS
T ss_pred EEEEEEEcccC
Confidence 57999999874
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.7e-19 Score=138.71 Aligned_cols=84 Identities=19% Similarity=0.315 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTT---SSBCSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 3689999999999999999999999999999999876544 7889999999999999999999999999998 6
Q ss_pred cEEEEeecCCCC
Q 025386 232 FLRLQFSRNPGP 243 (253)
Q Consensus 232 ~L~V~~ak~~~~ 243 (253)
.|+|+|++....
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 899999987644
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=136.45 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=74.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS---SCEEEEEEEEESCHHHHHHHHHHTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC---CCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 589999999999999999999999999988877766543 8899999999999999999999999999998 68
Q ss_pred EEEEeecCCC
Q 025386 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|+|++.+.
T Consensus 87 l~V~~a~~~~ 96 (98)
T 2cqp_A 87 VKLVLGSGPS 96 (98)
T ss_dssp CEEEESSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=136.29 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=75.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcC-CCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce-eCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~-fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~-i~g~~~~ 229 (253)
++++|||+|||+++|+++|+++|++ ||.|.+|+|+.+. + |+++|||||+|.+.++|++|++.||+.. |.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---- 79 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-T---GVSKGYGFVKFTDELEQKRALTECQGAVGLGS---- 79 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-T---CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-C---CCccceEEEEECCHHHHHHHHHHccCCcccCC----
Confidence 4689999999999999999999999 9999999999876 3 8899999999999999999999999999 888
Q ss_pred CccEEEEeecCCC
Q 025386 230 SKFLRLQFSRNPG 242 (253)
Q Consensus 230 ~r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 80 -~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 -KPVRLSVAIPKA 91 (104)
T ss_dssp -SCCCCCBCCCCC
T ss_pred -EeEEEEEccCCC
Confidence 579999998763
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=134.03 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.++. + +|||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~----~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g-- 79 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD----Y--QLKAVVQMENLQDAIGAVNSLHRYKIGS-- 79 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS----T--TCCEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC----C--CeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 35899999999999999999 9999999999999997754 2 5799999999999999999999999998
Q ss_pred CCCccEEEEeecCCCCC
Q 025386 228 PDSKFLRLQFSRNPGPR 244 (253)
Q Consensus 228 ~~~r~L~V~~ak~~~~r 244 (253)
+.|+|+|++....+
T Consensus 80 ---r~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 80 ---KKILVSLATGASGP 93 (96)
T ss_dssp ---EEEEEEECCCSSCC
T ss_pred ---eEEEEEEcCCCCCC
Confidence 68999999876443
No 63
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=133.55 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=71.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc--CceeCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDP 228 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln--G~~i~g~~~ 228 (253)
.++++|||+|||+++++++|+++|++||.|.+|+|+.. ||||||+|++.++|++|++.|+ +..|.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G--- 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------KNQAFLELATEEAAITMVNYYSAVTPHLRN--- 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECC---
Confidence 34789999999999999999999999999999988754 3699999999999999999875 677887
Q ss_pred CCccEEEEeecCCCCCC
Q 025386 229 DSKFLRLQFSRNPGPRS 245 (253)
Q Consensus 229 ~~r~L~V~~ak~~~~r~ 245 (253)
++|+|+|++....+.
T Consensus 81 --r~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 81 --QPIYIQYSNHKELKT 95 (101)
T ss_dssp --EECEEEECSCSSCCC
T ss_pred --cEEEEEEcCcccCcC
Confidence 789999999875443
No 64
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=136.68 Aligned_cols=85 Identities=27% Similarity=0.470 Sum_probs=73.5
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcE----EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i----~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
..++++|||+|||+++|+++|+++|++||.| +.+++. + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----T---GRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----C---SSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----C---CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3457999999999999999999999999998 455554 1 6778999999999999999999999999987
Q ss_pred CCCCCccEEEEeecCCCCCCC
Q 025386 226 DDPDSKFLRLQFSRNPGPRSV 246 (253)
Q Consensus 226 ~~~~~r~L~V~~ak~~~~r~g 246 (253)
+.|+|+|++....+..
T Consensus 95 -----~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 95 -----KILVIEFGKNKKQRSS 110 (115)
T ss_dssp -----CBCEEEECCCCSCCCC
T ss_pred -----cEEEEEEccCCCCCCC
Confidence 5799999998755443
No 65
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=134.24 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++||.|++|+|+.+ |||||+|++.++|++||+.|||+.|.++....+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3689999999999999999999999999999999854 499999999999999999999999998544445
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|++++.+.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 79999998864
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=131.84 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+ +++.|.+ +
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-----~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT---GHSKGFGFVRFTEYETQVKVMS--QRHMIDG-----R 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHH--SCEEETT-----E
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCC---CCccceEEEEECCHHHHHHHHH--cCCeeCC-----e
Confidence 3689999999999999999999999999999999977654 8899999999999999999998 5778887 6
Q ss_pred cEEEEeecCCCC
Q 025386 232 FLRLQFSRNPGP 243 (253)
Q Consensus 232 ~L~V~~ak~~~~ 243 (253)
.|+|+|++....
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cqg_A 84 WCDCKLPNSKQS 95 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEEecCCCCc
Confidence 899999988643
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=135.47 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++||+.||+ .|.+ +
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-----~ 86 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT---GKSRGYGFVTMADRAAAERACKDPNP-IIDG-----R 86 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSS---CCCCSEEEEEESSHHHHHHHHTCSSC-EETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhCCC-cCCC-----E
Confidence 3689999999999999999999999999999999977654 78899999999999999999999998 7888 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|++..
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 8999999763
No 68
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=137.77 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=77.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+. ++..|.+ +
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS---KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-----R 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTT---SSCCSEEEEECSSHHHHHHHHTS-CSEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC---CCcCceEEEEeCCHHHHHHHHHh-CCcEECC-----E
Confidence 3589999999999999999999999999999999977544 78899999999999999999988 9999998 6
Q ss_pred cEEEEeecCCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSVF 247 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g~ 247 (253)
.|+|+|++....+..+
T Consensus 97 ~l~V~~a~~~~~~~~~ 112 (116)
T 1x4b_A 97 VVEPKRAVAREESGSG 112 (116)
T ss_dssp EEEEECCSSCCCCCCS
T ss_pred EEEEEECCCCccCCCC
Confidence 8999999987544433
No 69
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=136.69 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc--eeCCCC
Q 025386 151 DASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY--RMDEDD 227 (253)
Q Consensus 151 ~~~~tLfV~nLp~-~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~--~i~g~~ 227 (253)
+++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ |||||+|++.++|++|++.||+. .|.+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G-- 81 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---------NEAFIEMATTEDAQAAVDYYTTTPALVFG-- 81 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---------SCEEEEESSHHHHHHHHHHHHHSCCEETT--
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---------CEEEEEECCHHHHHHHHHHHcCCCceECC--
Confidence 3578999999999 99999999999999999999998543 59999999999999999999975 4887
Q ss_pred CCCccEEEEeecCC
Q 025386 228 PDSKFLRLQFSRNP 241 (253)
Q Consensus 228 ~~~r~L~V~~ak~~ 241 (253)
++|+|+||+..
T Consensus 82 ---r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 ---KPVRVHLSQKY 92 (102)
T ss_dssp ---EECEEEEECCC
T ss_pred ---cEEEEEECCCC
Confidence 78999999964
No 70
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=137.68 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=74.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
...++|||+|||+++++++|+++|++||.|.+|+++.++ ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----- 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEG----- 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-----TBCTTEEEEECCCSHHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-----CCCceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 346899999999999999999999999999999998765 3478999999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 68999999864
No 71
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=131.85 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---------kg~afV~f~~~~~a~~a~~~l~g~~~~g-----~ 79 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------KGFGFIRLETRTLAEIAKVELDNMPLRG-----K 79 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---------TTEEEEECSSSHHHHHHHHHHTTCCBTT-----B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 3689999999999999999999999999999998743 3699999999999999999999999998 5
Q ss_pred cEEEEeecCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSV 246 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g 246 (253)
.|+|+|++.......
T Consensus 80 ~l~v~~a~~~~~~~~ 94 (99)
T 2cpj_A 80 QLRVRFACHSASLTS 94 (99)
T ss_dssp CCEEEESSCCSCCCC
T ss_pred eEEEEEcCCCCCCCC
Confidence 799999998754443
No 72
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=129.79 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+++. +||||+|.+.++|++|++.||+..|.+ +
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQG-----K 72 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 368999999999999999999999999999999872 399999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSV 246 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g 246 (253)
.|+|+|++.......
T Consensus 73 ~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 73 RMHVQLSTSRLRTAS 87 (92)
T ss_dssp EEEEEESSCCCSCCC
T ss_pred EEEEEEccCCCCCCC
Confidence 899999998754443
No 73
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2e-19 Score=134.47 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----r~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTT---SCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCC---CCEeeEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 489999999999999999999999999988888866543 8899999999999999999999999999998 68
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|+++.+
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999875
No 74
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=5.5e-19 Score=130.33 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.+..+ ++++|||||+|.+.++|++|+ .|||..|.+ +.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-----~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFS---GHPKGFAYIEFSDKESVRTSL-ALDESLFRG-----RQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSS---SSCCEEEEEEESSTHHHHHHG-GGTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHH-hcCCCEECC-----cE
Confidence 479999999999999999999999999999999977543 788999999999999999999 999999998 68
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|++++.+
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999999874
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.8e-19 Score=137.22 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=74.7
Q ss_pred CCEEEEeCCCC------CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025386 153 SSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~------~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
+++|||+|||+ ++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||+.|.+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT---GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 58999999999 9999999999999999999999977654 88999999999999999999999999999983
Q ss_pred CCCCccEEEEeecC
Q 025386 227 DPDSKFLRLQFSRN 240 (253)
Q Consensus 227 ~~~~r~L~V~~ak~ 240 (253)
+.|+|++++.
T Consensus 83 ----r~l~V~~a~~ 92 (100)
T 3ns6_A 83 ----HRLFLYTMKD 92 (100)
T ss_dssp ----CBCEEEESHH
T ss_pred ----eEEEEEECch
Confidence 3799999864
No 76
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=136.01 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce--eCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~--i~g~~~~ 229 (253)
++++|||+|||+++|+++|+++|++||.|.+|+++.. ||||||+|++.++|++|++.||+.. |.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G---- 86 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---------KRQALVEFEDVLGACNAVNYAADNQIYIAG---- 86 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCEEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhcCCCceeCC----
Confidence 4799999999999999999999999999999999843 3699999999999999999999986 566
Q ss_pred CccEEEEeecCC
Q 025386 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
++|+|+||++.
T Consensus 87 -r~i~V~~S~~k 97 (100)
T 3r27_A 87 -HPAFVNYSTSQ 97 (100)
T ss_dssp -EEEEEEECSCS
T ss_pred -cEEEEEecccc
Confidence 68999999874
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=6.5e-19 Score=145.42 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=76.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.+ +
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC---CcEeeEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 3689999999999999999999999999999999977644 8899999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|.|++....+.
T Consensus 143 ~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 143 TIQVDWCFVKGPKR 156 (165)
T ss_dssp ECEEEESEECC---
T ss_pred EEEEEEecCCCCCC
Confidence 89999998865443
No 78
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=134.21 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce--eCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~--i~g~~~~ 229 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.. ||||||+|++.++|++|++.||+.. |.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G---- 80 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------KRQALVEFENIDSAKECVTFAADVPVYIAG---- 80 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 4689999999999999999999999999999998753 3699999999999999999998754 776
Q ss_pred CccEEEEeecCCCCC
Q 025386 230 SKFLRLQFSRNPGPR 244 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r 244 (253)
++|+|+|++....+
T Consensus 81 -r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 -QQAFFNYSTSKRIT 94 (104)
T ss_dssp -SBCEEEECSSSSCC
T ss_pred -EEEEEEEccCcccc
Confidence 68999999886433
No 79
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=7.2e-19 Score=137.91 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|+ .|||..|.+ +.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFS---GHPKGYAYIEFAERNSVDAAV-AMDETVFRG-----RT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTT---SSCEEEEEEEESSHHHHHHHH-TTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcccEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 589999999999999999999999999999999977543 888999999999999999999 899999998 67
Q ss_pred EEEEeecCCCC
Q 025386 233 LRLQFSRNPGP 243 (253)
Q Consensus 233 L~V~~ak~~~~ 243 (253)
|+|+|++.+..
T Consensus 107 l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 IKVLPKRTNMP 117 (124)
T ss_dssp CEEEESSCCCS
T ss_pred EEEEECCCCCC
Confidence 99999997543
No 80
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-19 Score=139.33 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=74.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|| .||+..|.+ +
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS---RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-----V 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS---SSCCCCEEEEESCGGGHHHHH-HHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC---CccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-----e
Confidence 3589999999999999999999999999999999977654 788999999999999999999 999999998 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|++..
T Consensus 95 ~l~V~~a~~~ 104 (114)
T 2cq4_A 95 PIIVQASQAE 104 (114)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEecCCC
Confidence 8999999865
No 81
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=9.2e-19 Score=134.85 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCCCEEEEeCCCCC-CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 151 DASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 151 ~~~~tLfV~nLp~~-vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
..+++|||+|||++ +++++|+++|++||.|.+|++ . +|||||+|++.++|++|++.||+..|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 89 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H---------KGYAFVQYSNERHARAAVLGENGRVLAG---- 89 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E---------TTEEEEECSSSHHHHHHHHHHTTCEETT----
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e---------CCEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 34689999999999 999999999999999999998 1 3599999999999999999999999998
Q ss_pred CccEEEEeecCCCCCCCCCCCC
Q 025386 230 SKFLRLQFSRNPGPRSVFGARG 251 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r~g~g~rG 251 (253)
+.|+|+|++.+.....+.++|
T Consensus 90 -~~l~V~~a~~~~~~~~~~~~G 110 (110)
T 1wf1_A 90 -QTLDINMAGEPKPDRSGPSSG 110 (110)
T ss_dssp -EECCEEESCCCCSCCCCCCCC
T ss_pred -eEEEEEECCCCCCCCCCCCCC
Confidence 679999999765544444443
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=141.44 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=75.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEE--EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc----eeC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMD 224 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~--vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~----~i~ 224 (253)
.++++|||+|||+++|+++|+++|++||.|.. |+|+.++.+ |++||||||+|.+. +|++|++.|||. .|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t---g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT---QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS---SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC---CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34689999999999999999999999999977 999977744 88999999999999 999999999999 998
Q ss_pred CCCCCCccEEEEeecCCC
Q 025386 225 EDDPDSKFLRLQFSRNPG 242 (253)
Q Consensus 225 g~~~~~r~L~V~~ak~~~ 242 (253)
+ +.|+|+|++...
T Consensus 97 g-----r~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 G-----KTINVEFAKGSK 109 (131)
T ss_dssp G-----CCCCCEECCCSC
T ss_pred C-----EEEEEEECCCCC
Confidence 8 679999998753
No 83
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=130.96 Aligned_cols=77 Identities=19% Similarity=0.427 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC--CCCCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD--EDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~--g~~~~~ 230 (253)
+++|||+|||+++++++|+++|++||.|.+|++... +|||||+|.+.++|++|++.||+..|. +
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----- 82 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGGPD----- 82 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC-----
Confidence 589999999999999999999999999999998754 369999999999999999999999998 6
Q ss_pred ccEEEEeecCCCC
Q 025386 231 KFLRLQFSRNPGP 243 (253)
Q Consensus 231 r~L~V~~ak~~~~ 243 (253)
+.|+|+|++.+..
T Consensus 83 ~~l~V~~a~~~~~ 95 (97)
T 1why_A 83 RRLRVDFAKSGPS 95 (97)
T ss_dssp CBCEEEECCCCCC
T ss_pred cEEEEEECCCCCC
Confidence 5799999998644
No 84
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-18 Score=132.08 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC---
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP--- 228 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~--- 228 (253)
+.++|||+|||+++++++|+++|++||.|.+|+|+.++ + |+++|||||+|.+.++|++|++.|||..|.+...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-S---GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-S---SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C---CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 35899999999999999999999999999999999776 3 8899999999999999999999999999965321
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
..++|+|.|++.+
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 2368999999854
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=128.50 Aligned_cols=79 Identities=22% Similarity=0.348 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++| .|.+|+|+.+.. |+++|||||+|.+.++|++|++ ||+..|.+ +
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-----r 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMGG-----R 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEETT-----E
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeCC-----c
Confidence 36899999999999999999999999 999999997733 8899999999999999999999 99999998 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|.+++..
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 8999999875
No 86
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.6e-18 Score=127.59 Aligned_cols=78 Identities=18% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++ +++..|.+ +
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT---GRSRGFGFILFKDAASVEKVLD-QKEHRLDG-----R 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSTHHHHHHHH-SSCEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccccEEEEEECCHHHHHHHHH-hCCCEECC-----E
Confidence 4689999999999999999999999999999999977644 8899999999999999999995 58888988 6
Q ss_pred cEEEEee
Q 025386 232 FLRLQFS 238 (253)
Q Consensus 232 ~L~V~~a 238 (253)
.|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7999886
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=137.51 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC--ceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG--~~i~g~~~~ 229 (253)
+.++|||+|||+++||++|+++|++||.|++|+|+.+ ||||||+|++.++|++|++.|++ ..|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---- 81 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG---- 81 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 3689999999999999999999999999999999854 36999999999999999999974 78888
Q ss_pred CccEEEEeecCCCCC
Q 025386 230 SKFLRLQFSRNPGPR 244 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r 244 (253)
++|+|+||+....+
T Consensus 82 -r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 82 -QPIYIQFSNHKELK 95 (105)
T ss_dssp -EECCBCCCSSSSCC
T ss_pred -EEEEEEEcCCCCCC
Confidence 78999999886443
No 88
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=1.9e-18 Score=135.79 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=76.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++++|||+|||+++++++|+++|++||.|.+|+|+.++ + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S---GRSLGTADVHFERRADALKAMKQYKGVPLDG----- 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-S---SSCCSEEEEEESSHHHHHHHHHHHTTEESSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-C---CCEeeEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 446899999999999999999999999999999999776 3 7889999999999999999999999999988
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|+||....
T Consensus 104 ~~l~V~~a~~~~ 115 (124)
T 2kt5_A 104 RPMDIQLVASQI 115 (124)
T ss_dssp CEEEEEEECCTT
T ss_pred cEEEEEEeCCCC
Confidence 579999998763
No 89
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.5e-18 Score=134.31 Aligned_cols=82 Identities=22% Similarity=0.427 Sum_probs=73.8
Q ss_pred CCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 149 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 149 p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
|+.++++|||+|||+++++++|+++|++||.|.+|+++.+ ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--- 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN--- 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 4555799999999999999999999999999999999854 4457899999999999999999999999988
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 75 --~~l~v~~a~~~ 85 (115)
T 3lqv_A 75 --RYLVVLYYNAN 85 (115)
T ss_dssp --CBCEEEECCHH
T ss_pred --eEEEEEEecCC
Confidence 57999999753
No 90
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.2e-19 Score=133.47 Aligned_cols=82 Identities=21% Similarity=0.389 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET---GKPKGYGFCEYQDQETALSAMRNLNGREFSG-----RA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTT---TEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-----SC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCC-----cE
Confidence 589999999999999999999999999999999977543 8899999999999999999999999999988 57
Q ss_pred EEEEeecCCC
Q 025386 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|+|++...
T Consensus 80 l~v~~a~~~~ 89 (104)
T 1p1t_A 80 LRVDNAASEK 89 (104)
T ss_dssp BEEEETTCTT
T ss_pred EEEEeCCCcc
Confidence 9999998863
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-19 Score=135.59 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecC-CccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-SKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
....++|||+|||+++++++|+++|++|| |.+|+|+.++ .+ |+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g--- 87 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---ERLKGFGYAEFEDLDSLLSAL-SLNEESLGN--- 87 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTT---CCCCSCEEEEECCHHHHHHHH-HTTTCCBTT---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcC---CccCeEEEEEECCHHHHHHHH-hcCCCEECC---
Confidence 34579999999999999999999999999 9999998765 23 889999999999999999999 999999998
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 88 --~~l~V~~a~~~ 98 (100)
T 2j76_E 88 --RRIRVDVADQA 98 (100)
T ss_dssp --BCCCCEECCCS
T ss_pred --eEEEEEeccCC
Confidence 57999999863
No 92
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.9e-18 Score=127.81 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCC--CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
++++|||+|||+++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDG---- 78 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETT----
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCC----
Confidence 46899999999999999999999999 999988764 2599999999999999999999999998
Q ss_pred CccEEEEeecCCCC
Q 025386 230 SKFLRLQFSRNPGP 243 (253)
Q Consensus 230 ~r~L~V~~ak~~~~ 243 (253)
+.|+|+|++....
T Consensus 79 -~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 79 -SPIEVTLAKPVDK 91 (99)
T ss_dssp -EEEEEECCCCCCC
T ss_pred -cEEEEEECCCCCC
Confidence 6899999998643
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2e-18 Score=140.57 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----R 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSC---TTSCCEEEEEESBHHHHHHHHHHSTTEESSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 3689999999999999999999999999999999877543 8899999999999999999999999999988 6
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++....+
T Consensus 141 ~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 141 ELRVQMARYGRPP 153 (158)
T ss_dssp EEEEEEECCSSCC
T ss_pred EEEEEECCCCCCC
Confidence 8999999986443
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=143.97 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCC--cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++|||+|||+++|+++|+++|++|| .|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t---g~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----- 126 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN---GQSKGYAEVVVASENSVHKLLELLPGKVLNG----- 126 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHSTTCEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 58999999999999999999999999 9999999987654 8999999999999999999999999999998
Q ss_pred ccEEEEeecC
Q 025386 231 KFLRLQFSRN 240 (253)
Q Consensus 231 r~L~V~~ak~ 240 (253)
+.|+|++++.
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 6899999964
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=130.63 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEE-EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~-vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+.. |+++|||||+|.+.++|++||+. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----- 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----GRSTGEAFVQFASQEIAEKALKK-HKERIGH----- 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----SCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CcchhCC-----
Confidence 3689999999999999999999999999987 77776632 88999999999999999999987 9999988
Q ss_pred ccEEEEeecCCCC
Q 025386 231 KFLRLQFSRNPGP 243 (253)
Q Consensus 231 r~L~V~~ak~~~~ 243 (253)
|.|+|.++.....
T Consensus 84 r~i~v~~~~~~~~ 96 (104)
T 1wg5_A 84 RYIEIFKSSRAEV 96 (104)
T ss_dssp SCCEEEEECTTTS
T ss_pred cEEEEEECCHHHH
Confidence 6799999877543
No 96
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=139.65 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
++++|||+|||+++++++|+ ++|++||.|.+|.+... ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g-- 99 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQG-- 99 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCTT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeCC--
Confidence 46899999999999999876 79999999999887531 6788999999999999999999999999998
Q ss_pred CCCccEEEEeecCC
Q 025386 228 PDSKFLRLQFSRNP 241 (253)
Q Consensus 228 ~~~r~L~V~~ak~~ 241 (253)
++|+|+||+..
T Consensus 100 ---r~l~V~~a~~~ 110 (127)
T 2a3j_A 100 ---NPLVITFSETP 110 (127)
T ss_dssp ---SCCEEEECCCC
T ss_pred ---CEEEEEEccCc
Confidence 68999999875
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=133.73 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCCC------CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025386 152 ASSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 152 ~~~tLfV~nLp~~v------te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.+++|||+|||+++ ++++|+++|++||.|.+|+|+ .. + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~-~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EE-D---GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CB-T---TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CC-C---CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 36899999999999 789999999999999999988 22 2 7899999999999999999999999999998
Q ss_pred CCCCCc-cEEEEeecC
Q 025386 226 DDPDSK-FLRLQFSRN 240 (253)
Q Consensus 226 ~~~~~r-~L~V~~ak~ 240 (253)
+ .|+|+|+..
T Consensus 89 -----~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 -----QHTFRVNLFTD 99 (105)
T ss_dssp -----TCEEEEECSCC
T ss_pred -----CceEEEEEcch
Confidence 5 799999975
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=134.49 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++|++ +++..|.+ +.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g-----r~ 80 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-----TD 80 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT-----TT
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECC-----EE
Confidence 58999999999999999999999999999999997653 7889999999999999999998 99999998 57
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.|++.
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998864
No 99
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=135.88 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC--ceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG--~~i~g~~~~ 229 (253)
++++|||+|||+++||++|+++|++||.|++|+|+.+ ||||||+|++.++|++|++.|++ ..|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G---- 96 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG---- 96 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 4689999999999999999999999999999999864 36999999999999999999985 57887
Q ss_pred CccEEEEeecCCCCCC
Q 025386 230 SKFLRLQFSRNPGPRS 245 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r~ 245 (253)
++|+|+||+....+.
T Consensus 97 -r~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 97 -QPIYIQFSNHKELKT 111 (119)
T ss_dssp -BCCEEEECSSSSCCC
T ss_pred -eEEEEEEccCCCCCc
Confidence 689999998865443
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=126.12 Aligned_cols=74 Identities=22% Similarity=0.361 Sum_probs=68.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~~ 230 (253)
+.++|||+|||+++++++|+++|++||.|.+|+++.. +|||||+|.+.++|++|++.| |+..+.+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---------kg~afV~f~~~~~A~~a~~~l~~~~~~~g----- 76 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---------QQCAFIQFATRQAAEVAAEKSFNKLIVNG----- 76 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHTTTTTCEETT-----
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---------CCEEEEEECCHHHHHHHHHHhcCCeeECC-----
Confidence 3689999999999999999999999999999999853 369999999999999999999 9999998
Q ss_pred ccEEEEeec
Q 025386 231 KFLRLQFSR 239 (253)
Q Consensus 231 r~L~V~~ak 239 (253)
+.|+|+|+|
T Consensus 77 ~~l~v~~ak 85 (85)
T 2ytc_A 77 RRLNVKWGR 85 (85)
T ss_dssp EECCEEECC
T ss_pred CEEEEEecC
Confidence 679999986
No 101
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=136.57 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 134 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFG-----RT 134 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTT---CCCCSEEEEEESCHHHHHHHHHHSTEEEETT-----EE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 689999999999999999999999999999999876544 7889999999999999999999999999998 68
Q ss_pred EEEEee
Q 025386 233 LRLQFS 238 (253)
Q Consensus 233 L~V~~a 238 (253)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 102
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-19 Score=135.90 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++|+++|+++|++||.|.. +++.+..+ |+++|||||+|.+.++|++||+ |||..|.+ +
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-----~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT---GTNRKFGYVDFESAEDLEKALE-LTGLKVFG-----N 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE---ETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-----B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC---CCcCcEEEEEECCHHHHHHHHh-cCCcEECC-----c
Confidence 4689999999999999999999999999887 44444332 7788999999999999999998 99999998 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....++
T Consensus 86 ~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 86 EIKLEKPKGRDGTR 99 (101)
T ss_dssp CCEEECCSCCCCSS
T ss_pred EEEEEEcCCCCCCC
Confidence 79999998865443
No 103
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=134.92 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=73.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcE-EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i-~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
.+.++|||+|||+++|+++|+++|++||.| ..|+|+.++ + |+++|||||+|.+.++|++||+. |+..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~---g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g---- 83 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-N---GQGLGQALVQFKNEDDARKSERL-HRKKLNG---- 83 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-T---SSCSSCEEEECSSHHHHHHHGGG-CSEEETT----
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-C---CCcceEEEEEECCHHHHHHHHHh-CCCccCC----
Confidence 346899999999999999999999999999 889998776 3 88999999999999999999987 9999998
Q ss_pred CccEEEEeecCC
Q 025386 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
+.|+|.+++..
T Consensus 84 -r~i~v~~a~~~ 94 (114)
T 2cpy_A 84 -REAFVHVVTLE 94 (114)
T ss_dssp -EEEEEEEECHH
T ss_pred -eEEEEEECCHH
Confidence 68999999653
No 104
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-20 Score=143.87 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEE--------EEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 223 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i 223 (253)
++++|||+|||+++++++|+++|++||.|.+ |+|+.++.+ ++++|||||+|.+.++|++|++.|||..|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3689999999999999999999999999998 888866543 78899999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCCCCC
Q 025386 224 DEDDPDSKFLRLQFSRNPGPR 244 (253)
Q Consensus 224 ~g~~~~~r~L~V~~ak~~~~r 244 (253)
.+ +.|+|+|++....+
T Consensus 83 ~g-----~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SG-----NPIKVSFATRRADF 98 (116)
Confidence 98 57999999886433
No 105
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=126.90 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++|+++|+++|++||.|.+|+++. +||||+|.+.++|++|++.|||..|.+ +
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKG-----K 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 368999999999999999999999999999999872 389999999999999999999999998 6
Q ss_pred cEEEEeecCCCCCCCC
Q 025386 232 FLRLQFSRNPGPRSVF 247 (253)
Q Consensus 232 ~L~V~~ak~~~~r~g~ 247 (253)
.|+|+|++....+.++
T Consensus 72 ~l~v~~a~~~~~~~~~ 87 (90)
T 2dnp_A 72 RINVELSTKGQKKSGP 87 (90)
T ss_dssp ECEEEESCCCCCCCSC
T ss_pred EEEEEECCCCCCCCCC
Confidence 8999999987555443
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.3e-18 Score=133.06 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.++ ..|.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g----- 93 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQSR-HELDS----- 93 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT---CCCTTCEEEEESSHHHHHHHHHSSC-EEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC---CCcCcEEEEEECCHHHHHHHHHHCC-CcCCC-----
Confidence 34689999999999999999999999999999999977644 7889999999999999999999874 88888
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|++++...
T Consensus 94 ~~l~V~~a~~~~ 105 (109)
T 2rs2_A 94 KTIDPKVAFPRR 105 (109)
T ss_dssp EEEEEEECCCCC
T ss_pred EEEEEEEccCCC
Confidence 689999998754
No 107
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=137.28 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
....++|||+|||+++|+++|+++|++||.|.++.++....+ |+++|||||+|.+.++|++||+ ||+..|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~---g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---- 93 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN---GKATGEGFVEFRNEADYKAALC-RHKQYMGN---- 93 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT---SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT----
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC---CCCCeEEEEEECCHHHHHHHHH-hCCCeECC----
Confidence 344689999999999999999999999999988555544433 8899999999999999999999 99999998
Q ss_pred CccEEEEeecC
Q 025386 230 SKFLRLQFSRN 240 (253)
Q Consensus 230 ~r~L~V~~ak~ 240 (253)
+.|+|.+++.
T Consensus 94 -r~i~V~~a~~ 103 (124)
T 1wel_A 94 -RFIQVHPITK 103 (124)
T ss_dssp -SCBEEEEECH
T ss_pred -cEEEEEECCH
Confidence 6799999865
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=6.9e-19 Score=141.36 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-----~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----R 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS---SSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 3689999999999999999999999999999999876543 7889999999999999999999999999998 5
Q ss_pred cEEEEeecCCCC
Q 025386 232 FLRLQFSRNPGP 243 (253)
Q Consensus 232 ~L~V~~ak~~~~ 243 (253)
.|+|+|++....
T Consensus 118 ~l~V~~a~~~~~ 129 (135)
T 2lea_A 118 ELRVQMARYGRP 129 (135)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 799999988644
No 109
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=7.4e-18 Score=134.36 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=67.7
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceE-EEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~-aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
-.|||+||++.+|+++|+++|++||.|.+|+|+.+ . || |||+|++.++|++|++.|||..|.+.+ +.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~--------Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~---~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N--------GIQAMVEFESVLCAQKAKAALNGADIYAGC---CT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S--------SEEEEEEESSHHHHHHHHHHHTTCCCBTTB---SE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C--------CCEEEEEECCHHHHHHHHHHhCCCEecCCC---eE
Confidence 44689999999999999999999999999999753 1 56 999999999999999999999998743 47
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+||+..
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999999876
No 110
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=129.04 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|..+ ... ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQD-----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EET-----TEEEEEEEEEESSHHHHHHHHHHTTEEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 46899999999999999999999999987655 221 7789999999999999999999999999998 6
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++....+
T Consensus 82 ~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 82 SVSLYYTGEKGGT 94 (96)
T ss_dssp EEEEEECSSSCCC
T ss_pred EEEEEEcCCCCCC
Confidence 8999999886543
No 111
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.5e-18 Score=130.12 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
++++|||+|||+++++++|+ ++|++||.|.+|++... |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 36899999999999999999 99999999999988731 6677899999999999999999999999988
Q ss_pred CCCccEEEEeecCCC
Q 025386 228 PDSKFLRLQFSRNPG 242 (253)
Q Consensus 228 ~~~r~L~V~~ak~~~ 242 (253)
+.|+|+|++.+.
T Consensus 79 ---~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 ---KPMRIQYAKTDS 90 (97)
T ss_dssp ---EECEEEECSSCC
T ss_pred ---cEEEEEEccCCC
Confidence 689999998753
No 112
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1e-18 Score=125.18 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=68.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025386 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
+|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++ ||+..|.+ +.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-----~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT---NRHRGFGFVTFESEDIVEKVCE-IHFHEINN-----KMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS---TTSCBEEEEECSCHHHHHHHHS-SSCCCSSS-----CCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHH-CCCCEECC-----EEEE
Confidence 5899999999999999999999999999999876643 7899999999999999999997 99999998 5799
Q ss_pred EEee
Q 025386 235 LQFS 238 (253)
Q Consensus 235 V~~a 238 (253)
|+||
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9886
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=130.72 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=69.9
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|.+ +.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICG-----SRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSS-----CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECC-----cEE
Confidence 48999999999999999999999999999999865 24699999999999999999999999998 579
Q ss_pred EEEeecCCC
Q 025386 234 RLQFSRNPG 242 (253)
Q Consensus 234 ~V~~ak~~~ 242 (253)
+|+|++...
T Consensus 68 ~V~~a~~~~ 76 (101)
T 2hvz_A 68 RVELSTGMP 76 (101)
T ss_dssp EEEESSSCC
T ss_pred EEEEccCCC
Confidence 999998864
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=3.2e-18 Score=134.17 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCc---EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~---i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
..++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++||+ ||+..|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 4689999999999999999999999999 89999987754 8899999999999999999999 99999988
Q ss_pred CCccEEEEeecC
Q 025386 229 DSKFLRLQFSRN 240 (253)
Q Consensus 229 ~~r~L~V~~ak~ 240 (253)
+.|+|.+++.
T Consensus 88 --r~i~V~~a~~ 97 (118)
T 2db1_A 88 --RYIEVFKSHR 97 (118)
T ss_dssp --EEEEEEEECH
T ss_pred --eEEEEEECCH
Confidence 6899999854
No 115
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=130.28 Aligned_cols=77 Identities=21% Similarity=0.394 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------KGYSFVRFSTHESAAHAIVSVNGTTIEG-----H 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHcCCCEECC-----c
Confidence 3689999999999999999999999999999999865 2699999999999999999999999998 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++...
T Consensus 90 ~l~v~~a~~~~ 100 (109)
T 1x4g_A 90 VVKCYWGKESP 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 89999999864
No 116
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=132.44 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCc-EEEEEEe-ecCCccCCCccceEEEEEeCCHHHHHHHHHHHc--CceeCCCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~-i~~vrl~-~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln--G~~i~g~~~ 228 (253)
.++|||+|||+++++++|+++|++||. |.+|+++ .++.+ |+++|||||+|.+.++|++|++.|| +..|.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--- 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--- 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTT---TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCC---CCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---
Confidence 589999999999999999999999998 9999988 44433 7889999999999999999999996 588888
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 82 --~~l~V~~a~~~ 92 (109)
T 2dis_A 82 --HQIAVDWAEPE 92 (109)
T ss_dssp --BCCEEEESCSS
T ss_pred --CeEEEEEcCCC
Confidence 57999999875
No 117
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.8e-18 Score=128.46 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~-~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
++++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFG----- 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBT-----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCC-----
Confidence 368999999999 99999999999999999999984 2599999999999999999999999998
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 73 ~~l~V~~a~~~~ 84 (96)
T 2kvi_A 73 KKLILEVSSSNA 84 (96)
T ss_dssp TTBCEEEEECCC
T ss_pred cEEEEEEcCcCC
Confidence 579999998763
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=7e-18 Score=127.76 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=69.4
Q ss_pred CCCCCEEEEeCCCC-CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 150 PDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 150 ~~~~~tLfV~nLp~-~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
..++++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g--- 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFG--- 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETT---
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECC---
Confidence 33579999999998 99999999999999999999983 2599999999999999999999999998
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 85 --~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 --KKLILEVSSSN 95 (97)
T ss_dssp --EECEEEECCCC
T ss_pred --EEEEEEecCCC
Confidence 68999999874
No 119
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=127.19 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCc-EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC-ceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~-i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG-~~i~g~~~~ 229 (253)
+.++|||+|||+++|+++|+++|++||. |..+.+. . +|||||+|.+.++|++|++.||| ..|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~g---- 72 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K---------SGYAFVDYPDQNWAIRAIETLSGKVELHG---- 72 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E---------TTEEEECCSCHHHHHHHHHHHTTTCEETT----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C---------CCEEEEEECCHHHHHHHHHHccCCeeECC----
Confidence 3689999999999999999999999999 5555553 2 36999999999999999999999 99988
Q ss_pred CccEEEEeecCCCCCCCC
Q 025386 230 SKFLRLQFSRNPGPRSVF 247 (253)
Q Consensus 230 ~r~L~V~~ak~~~~r~g~ 247 (253)
+.|+|+|++....++..
T Consensus 73 -~~l~v~~a~~~~~~~~~ 89 (93)
T 2cqh_A 73 -KIMEVDYSVSKKLRSSG 89 (93)
T ss_dssp -EECEEEECCCCCCCCCS
T ss_pred -EEEEEEEccCccccCCC
Confidence 68999999987555443
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=5.3e-18 Score=144.80 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 148 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 148 ~p~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
.|..+.+||||+|||+++||++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++||+.||+..+.+
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g-- 84 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT---RRSLGYAYVNFQQPADAERALDTMNFDVIKG-- 84 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC---CCccccccceeCCHHHHHHHHHHhhhhhcCC--
Confidence 34445789999999999999999999999999999999987654 8899999999999999999999999999998
Q ss_pred CCCccEEEEeecCC
Q 025386 228 PDSKFLRLQFSRNP 241 (253)
Q Consensus 228 ~~~r~L~V~~ak~~ 241 (253)
+.|++.++...
T Consensus 85 ---~~i~~~~~~~~ 95 (213)
T 4f02_A 85 ---KPVRIMWSQRD 95 (213)
T ss_dssp ---EECEEEECCCC
T ss_pred ---ccccccccccc
Confidence 67999998764
No 121
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=126.97 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=65.5
Q ss_pred CCEEEEeCCCCCC------CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025386 153 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~v------te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
+++|||+|||+++ ++++|+++|++||.|.+|+++. . + |+++|||||+|.+.++|++|++.|||..|.+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~-~---g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-E-D---GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-B-T---TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-C-C---CcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3799999999999 7799999999999999999873 2 2 78999999999999999999999999999983
Q ss_pred CCCCccEEE
Q 025386 227 DPDSKFLRL 235 (253)
Q Consensus 227 ~~~~r~L~V 235 (253)
+ +|+|
T Consensus 76 ~----~l~V 80 (81)
T 2krb_A 76 H----TFRV 80 (81)
T ss_dssp S----CCCC
T ss_pred e----eEEe
Confidence 1 5765
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=127.03 Aligned_cols=78 Identities=27% Similarity=0.482 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.+++|||+|||+++++++|+++|++||.|. ++++.. +++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-----D 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCCSSS-----S
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-------CCCcEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 468999999999999999999999999996 666643 345799999999999999999999999998 5
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++.+.
T Consensus 85 ~l~V~~a~~~~ 95 (97)
T 2e5j_A 85 TLRVALARQQR 95 (97)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEcCCCC
Confidence 79999998764
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=124.68 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.++ ..+.+ +.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g-----~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQSR-HELDS-----KTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCS---SSCSSEEEECCCCTTHHHHHHHTTT-CCCSS-----CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCC---CCcCceEEEEEcCHHHHHHHHHhCC-CccCC-----EEE
Confidence 47999999999999999999999999999999876543 7889999999999999999999999 88888 579
Q ss_pred EEEee
Q 025386 234 RLQFS 238 (253)
Q Consensus 234 ~V~~a 238 (253)
+|++|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 124
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=2.9e-18 Score=149.44 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCC--cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.+ |++||||||+|.+.++|++||+.||++.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t---g~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---- 139 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHG---- 139 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT---CCEEEEEEEEESCTTHHHHHHTTSTTSCBTT----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCeECC----
Confidence 357899999999999999999999999 9999999987654 8999999999999999999999999999998
Q ss_pred CccEEEEeec
Q 025386 230 SKFLRLQFSR 239 (253)
Q Consensus 230 ~r~L~V~~ak 239 (253)
+.|+|+|++
T Consensus 140 -r~l~V~~a~ 148 (229)
T 3q2s_C 140 -QNPVVTPVN 148 (229)
T ss_dssp -BCCEEEECC
T ss_pred -EEeEEEECC
Confidence 679999985
No 125
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=6.4e-19 Score=130.57 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=71.1
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.+ |++|++.|||..|.+ +.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g-----~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRET---KKPKGFGFVEMQEES-VSEAIAKLDNTDFMG-----RTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSS---CCCCEEEEEEECTTH-HHHHHHTSCSSCCSS-----SSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCC---CCcceEEEEEECCHH-HHHHHHHhCCCEECC-----eEE
Confidence 58999999999999999999999999999999877654 788999999999999 999999999999998 579
Q ss_pred EEEeecCCC
Q 025386 234 RLQFSRNPG 242 (253)
Q Consensus 234 ~V~~ak~~~ 242 (253)
+|+||....
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 999998753
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.8e-18 Score=130.14 Aligned_cols=77 Identities=31% Similarity=0.570 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFAN-----Q 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 46899999999999999999999999999999998 1599999999999999999999999988 6
Q ss_pred cEEEEeecCCCCC
Q 025386 232 FLRLQFSRNPGPR 244 (253)
Q Consensus 232 ~L~V~~ak~~~~r 244 (253)
.|+|+|++.+..+
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 8999999986543
No 127
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.5e-17 Score=126.56 Aligned_cols=73 Identities=19% Similarity=0.403 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++|+++|+++|++||.|.+|+++. +||||+|.+.++|++|++.||+..|.+ +.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 74 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEG-----EN 74 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCC-----CE
Confidence 58999999999999999999999999999998861 499999999999999999999999998 68
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++.+
T Consensus 75 l~v~~a~~~ 83 (103)
T 2dgu_A 75 IEIVFAKPP 83 (103)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999876
No 128
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-17 Score=123.18 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|| ++|+++|+++|++||.|.+|+|.. ++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES-----V 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHTTTEEETT-----E
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 4689999996 899999999999999999999852 34699999999999999999999999988 6
Q ss_pred cEEEEeecCCCCCC
Q 025386 232 FLRLQFSRNPGPRS 245 (253)
Q Consensus 232 ~L~V~~ak~~~~r~ 245 (253)
.|+|+|++....+.
T Consensus 78 ~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 78 QLKVNIARKQPMLD 91 (97)
T ss_dssp EEEEECCSSCCCCC
T ss_pred EEEEEECCCCCCCC
Confidence 89999998875443
No 129
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.8e-18 Score=134.15 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCC-cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
...+|||+|||+++++++|+++|++|| .|..+++... +++|||||+|++.++|++||+.|||..|.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----- 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-------DFDGTGALEFPSEEILVEALERLNNIEFRG----- 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-------SSSCCEEEEESSHHHHHHHHHHTTTEEETT-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-------CCCCEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 368999999999999999999999999 8999988633 346899999999999999999999999998
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|++++.+.
T Consensus 95 r~i~V~~a~~~p 106 (111)
T 2jvr_A 95 SVITVERDDNPP 106 (111)
T ss_dssp EEEEEEESCC--
T ss_pred eEEEEEECCCCC
Confidence 689999998753
No 130
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=130.07 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC--ceeCCCCC
Q 025386 152 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDP 228 (253)
Q Consensus 152 ~~~tLfV~nLp~~-vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG--~~i~g~~~ 228 (253)
++++|||+|||++ +++++|+++|++||.|.+|+|+.. ||||||+|++.++|++|++.||+ ..|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--- 91 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---------KSQAFIEMETREDAMAMVDHCLKKALWFQG--- 91 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS---
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhccCCceECC---
Confidence 4789999999998 999999999999999999999733 36999999999999999999975 45777
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
++|+|+||+..
T Consensus 92 --r~l~V~~a~~~ 102 (112)
T 1x4f_A 92 --RCVKVDLSEKY 102 (112)
T ss_dssp --SCCEEEEECSC
T ss_pred --EEEEEEECccc
Confidence 68999999875
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.5e-18 Score=128.25 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++++++|+++|++||.|.++++... +|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE---------KGCCFIKYDTHEQAAVCIVALANFPFQG-----RN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 689999999999999999999999999999999722 3699999999999999999999999998 67
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|+|++.
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999986
No 132
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=135.97 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEE--------EEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEV--------RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~v--------rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
..++++|||+|||+++|+++|+++|++||.|..+ ++... |+++|||||+|.+.++|++|++.|||+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------GRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------TTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC------CCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 3446899999999999999999999999998764 33221 778999999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeecCCCCCC
Q 025386 222 RMDEDDPDSKFLRLQFSRNPGPRS 245 (253)
Q Consensus 222 ~i~g~~~~~r~L~V~~ak~~~~r~ 245 (253)
.|.+ +.|+|+|++....+.
T Consensus 116 ~~~g-----~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 116 VLFG-----KPMVVQFARSARPKQ 134 (143)
T ss_dssp EETT-----EECEEEECCCSCC--
T ss_pred EeCC-----cEEEEEECCCCCCcc
Confidence 9998 689999998865544
No 133
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=2.6e-17 Score=138.08 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=75.9
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
+.++++|||+|||+++++++|+++|++||.|++|+|+.+. + |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~---g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---- 156 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S---GRSLGTADVHFERRADALKAMKQYKGVPLDG---- 156 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-T---SSCSCCEEEEESCHHHHHHHHHHSTTCBCSS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C---CCEeeEEEEEeCCHHHHHHHHHHhCCCEECC----
Confidence 3457899999999999999999999999999999998776 2 7889999999999999999999999999998
Q ss_pred CccEEEEeecCC
Q 025386 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
+.|+|+||...
T Consensus 157 -r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 -RPMDIQLVASQ 167 (177)
T ss_dssp -SBCEEEEESSG
T ss_pred -EEEEEEEecCC
Confidence 57999999764
No 134
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=6.9e-18 Score=136.37 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCc---EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~---i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|++.++|++||+ ||+..|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 3589999999999999999999999999 88999987754 8899999999999999999999 99999988
Q ss_pred CCccEEEEeecC
Q 025386 229 DSKFLRLQFSRN 240 (253)
Q Consensus 229 ~~r~L~V~~ak~ 240 (253)
|.|+|.++..
T Consensus 115 --r~i~V~~a~~ 124 (136)
T 2hgl_A 115 --RYIEVFKSHR 124 (136)
T ss_dssp --SEEEEEECCH
T ss_pred --EEEEEEECCh
Confidence 6899998854
No 135
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=8.9e-18 Score=126.32 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+.-|||+||++.+||++|+++|.+||+|+++++.. +||||||+|.++++|++|++.||+.++.+ ++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-----r~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLAN-----TT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECC-----cE
Confidence 57899999999999999999999999999999875 24799999999999999999999999999 68
Q ss_pred EEEEeec
Q 025386 233 LRLQFSR 239 (253)
Q Consensus 233 L~V~~ak 239 (253)
|+|++|.
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999984
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.3e-17 Score=156.53 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=76.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||++||+++|.++|++||.|+.|+|+.+..+ |+++|||||+|.+.++|++||+.|||+.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g----- 171 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS---GKPRGYAFIEYEHERDMHSAYKHADGKKIDG----- 171 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC---CCccceEEEeeccHHHHHHHHHHcCCCEECC-----
Confidence 34689999999999999999999999999999999977544 8889999999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 172 r~i~V~~a~~~ 182 (437)
T 3pgw_S 172 RRVLVDVERGR 182 (437)
T ss_pred EEEEEEEeCCC
Confidence 57999999864
No 137
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=129.18 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|..|+|+.. +|||||+|.+.++|++|++.|||+.|.+ +.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---------GITAIVEFLEPLEARKAFRHLAYSKFHH-----VP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---------SSCEEEEESCHHHHHHHHHHHTTCBSSS-----SB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCEECC-----eE
Confidence 479999999999999999999999999999988742 3699999999999999999999999998 68
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++..
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999999875
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=130.62 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCc---EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~---i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
...++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ ||+..|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-- 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMGQ-- 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS--
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeCC--
Confidence 34689999999999999999999999988 89999987653 7899999999999999999999 99999987
Q ss_pred CCCccEEEEeecC
Q 025386 228 PDSKFLRLQFSRN 240 (253)
Q Consensus 228 ~~~r~L~V~~ak~ 240 (253)
+.|+|.+++.
T Consensus 82 ---r~i~V~~a~~ 91 (107)
T 2lmi_A 82 ---RYVEVYEINN 91 (107)
T ss_dssp ---SCCCCEECCH
T ss_pred ---eEEEEEECCH
Confidence 6799998864
No 139
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=1.9e-17 Score=137.98 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
..+|||+||++.+|+++|+++|++||.|++|+|..++ ++|||||+|++.++|++|++.|||..|.+.. +.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g---~~ 115 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYNAC---CT 115 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSC---SC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC---cE
Confidence 4679999999999999999999999999999987543 3479999999999999999999999997632 57
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++..
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999999875
No 140
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.7e-17 Score=129.79 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++++++|+++|++||.|.+++++.+..+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----R 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCC-----c
Confidence 4689999999999999999999999999999999977544 8899999999999999999999999999988 6
Q ss_pred cEEEEeecC
Q 025386 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+|+||+.
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 899999863
No 141
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=129.15 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++. |+++|||||+|.+.++|++|| .||+..|.+ |.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-----r~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-----RY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 4799999999999999999999999 899999987653 889999999999999999999 799999998 68
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|..+..
T Consensus 85 i~V~~a~~ 92 (109)
T 2dnn_A 85 VEVSPATE 92 (109)
T ss_dssp EEEEECCH
T ss_pred EEEEECCc
Confidence 99988754
No 142
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3.4e-17 Score=131.59 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceE-EEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~-aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.-.|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|++|++.|||..|.+.+ +
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~---~ 96 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNAC---C 96 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTE---E
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCC---c
Confidence 3567899999999999999999999999999987543 367 999999999999999999999998743 5
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|||..
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 8999999975
No 143
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=5.8e-17 Score=130.67 Aligned_cols=81 Identities=26% Similarity=0.470 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----KT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CcceeEEEEEECCHHHHHHHHHHcCCCccCC-----ce
Confidence 589999999999999999999999999999999977643 8899999999999999999999999999988 67
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|.|++..
T Consensus 74 l~v~~~~~~ 82 (167)
T 1fxl_A 74 IKVSYARPS 82 (167)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999864
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=3.2e-17 Score=132.81 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 138 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCG-----C 138 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSS-----S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 4689999999999999999999999999999999855 24799999999999999999999999988 5
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
+|+|+|++.+
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 7999999875
No 145
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=5e-17 Score=120.40 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-----KD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 5899999999999999999999999 99999885 235799999999999999999999999998 68
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+|++..
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999775
No 146
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=3.4e-18 Score=138.74 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++||++|+++|++|| |++|+|+.++. |+++|||||+|++.++|++|| .||+..|.+ |
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-----R 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQH-----R 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS-----C
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECC-----E
Confidence 358999999999999999999999999 77999887653 889999999999999999999 899999988 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|.++..+.
T Consensus 114 ~i~V~~a~~~~ 124 (139)
T 2hgn_A 114 YIELFLNSTTG 124 (139)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 79999988763
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=4.8e-17 Score=131.72 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=75.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
++++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT---GYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-----K 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC---CccceEEEEEECCHHHHHHHHHhcCCCEeCC-----c
Confidence 3689999999999999999999999999999999876543 7889999999999999999999999999988 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++...
T Consensus 74 ~l~v~~~~~~~ 84 (168)
T 1b7f_A 74 RLKVSYARPGG 84 (168)
T ss_dssp ECEEEECCCCS
T ss_pred EEEEEecCCCc
Confidence 89999998653
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=121.43 Aligned_cols=78 Identities=12% Similarity=0.235 Sum_probs=69.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEE-EeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vr-l~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+++|||+|||+++++++|+++|++||.|.+|+ ++.++.+ +.|||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-------~~afV~f~~~~~a~~Ai~~l~g~~~~g----- 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-------AVVNVTYSSKDQARQALDKLNGFQLEN----- 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-------EEEEEEESSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-------CEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 368999999999999999999999999999995 6655432 359999999999999999999999998
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 57999999875
No 149
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=5.4e-17 Score=126.51 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|++|+|+.+ |||||+|++.++|++||+.|||+.|.+.......
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 589999999999999999999999999999998744 4999999999999999999999999995322223
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|..++..
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 788777654
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=8.7e-17 Score=135.47 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++||.|.+|+++.+..+ |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~ 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT---GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG-----Q 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-----S
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHHccCCEeCC-----c
Confidence 3589999999999999999999999999999999977544 8899999999999999999999999999988 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|+|++.+.
T Consensus 196 ~i~V~~a~~~~ 206 (216)
T 2qfj_A 196 YLRVGKAVTPP 206 (216)
T ss_dssp BCEEEECSSCS
T ss_pred EEEEEEecCCC
Confidence 79999999863
No 151
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=119.52 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=66.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+| +. ++.+ |+ ||||+|.+.++|++|++ |||..|.+ +.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~---g~---~afV~f~~~~~a~~ai~-l~g~~~~g-----~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDK---GV---FAIVEMGDVGAREAVLS-QSQHSLGG-----HR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSS---CC---EEEEEESSHHHHHHHHT-CSCCEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCC---Cc---EEEEEECCHHHHHHHHh-cCCeEECC-----EE
Confidence 5799999999999999999999999999987 33 3322 33 99999999999999999 99999998 67
Q ss_pred EEEEeecCCCC
Q 025386 233 LRLQFSRNPGP 243 (253)
Q Consensus 233 L~V~~ak~~~~ 243 (253)
|+|+++.....
T Consensus 74 l~V~~a~~~~~ 84 (94)
T 2e5g_A 74 LRVRPREQKEF 84 (94)
T ss_dssp CCCBCSCCSCC
T ss_pred EEEEECCcCCC
Confidence 99999976533
No 152
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=6.2e-18 Score=120.96 Aligned_cols=75 Identities=13% Similarity=0.314 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEE
Q 025386 155 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 234 (253)
Q Consensus 155 tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~ 234 (253)
+|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++. ++..|.+ +.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT---NKRRGFCFITFKEEEPVKKIMEK-KYHNVGL-----SKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCC---SSSCCCEEEECSSSHHHHHHHTT-SSCCBTT-----BCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCCEEEEEECCHHHHHHHHHh-CCCeECC-----EEEE
Confidence 5999999999999999999999999999999876543 78899999999999999999985 8899988 5688
Q ss_pred EEee
Q 025386 235 LQFS 238 (253)
Q Consensus 235 V~~a 238 (253)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=8.6e-17 Score=133.54 Aligned_cols=82 Identities=10% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++|+++|+++|++||.|..|+++.+..+ |+++|||||+|.+.++|++|++. ++..|.+ +
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G-----~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS---GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG-----H 173 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHC-SCCEETT-----E
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCccceEEEEECCHHHHHHHHHh-CCcEECC-----E
Confidence 3589999999999999999999999999999999977644 88999999999999999999976 8999998 6
Q ss_pred cEEEEeecCCC
Q 025386 232 FLRLQFSRNPG 242 (253)
Q Consensus 232 ~L~V~~ak~~~ 242 (253)
.|+|.|+....
T Consensus 174 ~i~v~~a~~k~ 184 (196)
T 1l3k_A 174 NCEVRKALSKQ 184 (196)
T ss_dssp ECEEEECC---
T ss_pred EEEEEecCChh
Confidence 79999998763
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.2e-16 Score=132.81 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=77.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.+.++|||+|||+++++++|+++|++||.|.+++++.+..+ |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----- 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT---CSEEEEEEEEESSSSHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 34689999999999999999999999999999999977543 8889999999999999999999999999988
Q ss_pred ccEEEEeecCCCC
Q 025386 231 KFLRLQFSRNPGP 243 (253)
Q Consensus 231 r~L~V~~ak~~~~ 243 (253)
+.|+|+|++.+..
T Consensus 184 ~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 184 KKLLVQRASVGAK 196 (198)
T ss_dssp EECEEEESCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 6899999988643
No 155
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=128.07 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=68.0
Q ss_pred CCCEEEE--eCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCcee-CCCCC
Q 025386 152 ASSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM-DEDDP 228 (253)
Q Consensus 152 ~~~tLfV--~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i-~g~~~ 228 (253)
++++||| +||++++++++|+++|++||.|.+|.|+.. ||||||+|++.++|++|++.|||..| ... .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l-g 93 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDDL-G 93 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------CSCEEEEESSHHHHHHHHHHTTTCEEECTT-S
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCEEcccc-C
Confidence 4689999 779999999999999999999999987642 36999999999999999999999988 211 0
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
.+++|.|.|++.-
T Consensus 94 ~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKITLYLNFVEKV 106 (114)
T ss_dssp CEEECEEEEESCC
T ss_pred CCcEEEEEecccC
Confidence 1268999999863
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.4e-16 Score=129.64 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.+..+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-----KK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CSEEEEEEEEESSTTHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCEECC-----eE
Confidence 689999999999999999999999999999999977543 8899999999999999999999999999998 68
Q ss_pred EEEEeec
Q 025386 233 LRLQFSR 239 (253)
Q Consensus 233 L~V~~ak 239 (253)
|+|+||.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999973
No 157
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=5e-17 Score=129.83 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEE--EEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~--~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
..++|||+|||+++|+++|+++|++| .|+ +|+|+.++. |+++|||||+|++.++|++||+. ++..|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g---- 110 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALGK-HKERIGH---- 110 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHTT-TTCCBTT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHHH-CCCEECC----
Confidence 35899999999999999999999999 787 888887653 88999999999999999999975 7788887
Q ss_pred CccEEEEeecC
Q 025386 230 SKFLRLQFSRN 240 (253)
Q Consensus 230 ~r~L~V~~ak~ 240 (253)
|.|+|..+..
T Consensus 111 -R~I~V~~a~~ 120 (126)
T 2hgm_A 111 -RYIEVFKSSQ 120 (126)
T ss_dssp -BCCCCEEECH
T ss_pred -EEEEEEECCH
Confidence 6799888753
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=1.1e-16 Score=136.54 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|++||+.|||..|.+ +.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-----~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECC-----EE
Confidence 5789999999999999999999999999999999775 4578999999999999999999999999998 68
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|+|++.
T Consensus 173 i~V~~a~~ 180 (213)
T 4f02_A 173 VFVGRFKS 180 (213)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99999975
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.9e-17 Score=124.47 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+|+|+.++ + |+++|||||+|.+.++|++|++ ++..|.+ +.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-----~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-T---GVSKGYGFVSFYNDVDVQKIVE--SQINFHG-----KK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-T---SCEEEEEEEEESSCCCHHHHTT--CCCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C---CCccceEEEEECCHHHHHHHHh--CCCeECC-----EE
Confidence 5899999999999999999999999999999999876 3 8899999999999999999998 9999988 57
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|.|.++...
T Consensus 78 l~v~~a~~~ 86 (102)
T 2xs2_A 78 LKLGPAIRK 86 (102)
T ss_dssp CEEEEEEEC
T ss_pred EEEEECCcC
Confidence 999988754
No 160
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.3e-16 Score=136.50 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=70.2
Q ss_pred CCEEEEeCCC-CCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 153 SSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp-~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+++|||+||| +++|+++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~~~g-----~ 70 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--------PGAAMVEMADGYAVDRAITHLNNNFMFG-----Q 70 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--------TTCEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 6899999999 899999999999999999999998543 4699999999999999999999999998 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|.|++..
T Consensus 71 ~l~v~~s~~~ 80 (205)
T 3tyt_A 71 KMNVCVSKQP 80 (205)
T ss_dssp ECEEEECSCS
T ss_pred eEEEEEccCC
Confidence 8999999864
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=4.3e-16 Score=126.04 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=73.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||.++++++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|.+|++.|||..|.+.. ++
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 162 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT---GRPRGVAFVRYNKREEAQEAISALNNVIPEGGS---QP 162 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhcCCEecCCC---eE
Confidence 589999999999999999999999999999999877643 788999999999999999999999999998744 58
Q ss_pred EEEEee
Q 025386 233 LRLQFS 238 (253)
Q Consensus 233 L~V~~a 238 (253)
|+|+||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999986
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=129.87 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcE----EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i----~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
..+|||+|||+++|+++|+++|++||.| ..|+|+.++. |+++|||||+|++.++|++||+. |+..|.+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g--- 94 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLGK--- 94 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESSS---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeCC---
Confidence 5899999999999999999999999875 5888887642 89999999999999999999986 9988877
Q ss_pred CCccEEEEeec
Q 025386 229 DSKFLRLQFSR 239 (253)
Q Consensus 229 ~~r~L~V~~ak 239 (253)
|.|+|..+.
T Consensus 95 --R~i~V~~a~ 103 (123)
T 2dha_A 95 --RYIELFRST 103 (123)
T ss_dssp --CEECCEEEC
T ss_pred --eEEEEEECC
Confidence 678888775
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-16 Score=127.21 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=73.2
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
++|||+|||+++|+++|+++|++||.|.+|+++.++. ++++|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIEN-----NIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETT-----EEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCC-----Cee
Confidence 5899999999999999999999999999999997764 6789999999999999999999999999988 689
Q ss_pred EEEeecCCC
Q 025386 234 RLQFSRNPG 242 (253)
Q Consensus 234 ~V~~ak~~~ 242 (253)
+|.|+....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997753
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.4e-16 Score=128.12 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++|+++|+++|++||.|.+++++.+.. |+++|||||+|.+.++|++|++.|||..+.+.+ .+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~~ 167 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC--SS 167 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC--SS
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCC--CC
Confidence 358999999999999999999999999999999987753 789999999999999999999999999887531 16
Q ss_pred cEEEEeec
Q 025386 232 FLRLQFSR 239 (253)
Q Consensus 232 ~L~V~~ak 239 (253)
+|+|+||.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 89999983
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=120.64 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=63.9
Q ss_pred CCE-EEEeCCCCCCCHHH----HHHhhcCC-CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025386 153 SST-LYVEGLPADSTKRE----VAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~t-LfV~nLp~~vte~~----L~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
+.| |||+|||+++++++ |+++|++| |.|.+| . | |||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t----g---G~AfV~F~~~esA~~A~~~l~G~~l~g- 73 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T----G---CSAILRFINQDSAERAQKRMENEDVFG- 73 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C----T---TCEEEEESSHHHHHHHHHHHTTCCSSS-
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e----c---CEEEEEECCHHHHHHHHHHhcCCccCC-
Confidence 566 99999999999988 55899999 599888 1 2 699999999999999999999999999
Q ss_pred CCCCccEEEEeecCC
Q 025386 227 DPDSKFLRLQFSRNP 241 (253)
Q Consensus 227 ~~~~r~L~V~~ak~~ 241 (253)
|+|+|+||+..
T Consensus 74 ----r~i~v~~A~~~ 84 (96)
T 2diu_A 74 ----NRIIVSFTPKN 84 (96)
T ss_dssp ----SCCEEESSCCS
T ss_pred ----ceEEEEecCCC
Confidence 68999999885
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=2.2e-16 Score=117.89 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=61.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|++.++|+ +|++..+.... +
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~~g---~ 74 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLIIKG---I 74 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEETT---E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCcccCC---E
Confidence 3689999999999999999999999999999999853 3579999999999987 36777765322 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|.+++..
T Consensus 75 ~v~v~~a~~k 84 (89)
T 3d2w_A 75 SVHISNAEPK 84 (89)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEcCCC
Confidence 7899998764
No 167
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8e-17 Score=118.98 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=62.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++ +++..+.... +.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~----~~~~~~~~~g---~~ 69 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQS----LCGEDLIIKG---IS 69 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHH----TTTCEEEETT---EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHH----HhcCCceeCC---EE
Confidence 589999999999999999999999999999998743 35799999999999975 4555552221 67
Q ss_pred EEEEeecCCCCC
Q 025386 233 LRLQFSRNPGPR 244 (253)
Q Consensus 233 L~V~~ak~~~~r 244 (253)
|+|.+++....+
T Consensus 70 l~v~~a~~~~~~ 81 (88)
T 1wf0_A 70 VHISNAEPKHNS 81 (88)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 999999876443
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=2.3e-16 Score=130.98 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=73.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+..+ |+++|||||+|.+.++|++||+. ++..|.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g----- 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT---KRSRGFGFVTYATVEEVDAAMNA-RPHKVDG----- 81 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHT-CSCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC---CCccceEEEEeCCHHHHHHHHhc-CCCEECC-----
Confidence 34689999999999999999999999999999999977644 88999999999999999999976 8999988
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|.++...
T Consensus 82 ~~l~v~~~~~~ 92 (196)
T 1l3k_A 82 RVVEPKRAVSR 92 (196)
T ss_dssp EECEEEECCC-
T ss_pred EEeeeecccCc
Confidence 67999998764
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=4.5e-16 Score=125.36 Aligned_cols=80 Identities=23% Similarity=0.454 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||.++++++|+++|++||.|.+++++.+..+ |+++|||||+|.+.++|++|++.|||..|.+.. .+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 161 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT---EP 161 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---cc
Confidence 579999999999999999999999999999999877643 788999999999999999999999999999853 36
Q ss_pred EEEEee
Q 025386 233 LRLQFS 238 (253)
Q Consensus 233 L~V~~a 238 (253)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999986
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=3.9e-16 Score=123.12 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=68.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 151 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
.++++|||+|| ++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.|||..|.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----- 100 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES----- 100 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 34789999996 699999999999999999999862 34799999999999999999999999988
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 101 ~~l~V~~a~~~~ 112 (121)
T 2bz2_A 101 VQLKVNIARKQP 112 (121)
T ss_dssp CBCEEEECCSSC
T ss_pred eEEEEEEeCCCC
Confidence 579999998864
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=8e-16 Score=125.03 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++|+++|+++|++||.|.+|+++.+.... .++++|||||+|.+.++|++|++.||+..+..... +.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~--~~ 79 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN-PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH--HP 79 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS-SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS--SC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc--cc
Confidence 5899999999999999999999999999999999776430 02789999999999999999999999998865321 57
Q ss_pred EEEEeecCCC
Q 025386 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|.+.+++...
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 8888887643
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.3e-16 Score=127.78 Aligned_cols=80 Identities=11% Similarity=0.289 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++++++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++ |++..|.+ +.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT---GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-----RK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS---STTSEEEEEEESSHHHHHHHHH-CSEECSSS-----SC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHh-CCCEEeCC-----eE
Confidence 579999999999999999999999999999999877543 8899999999999999999997 89999988 57
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|+||++.
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999763
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.64 E-value=5e-16 Score=130.78 Aligned_cols=81 Identities=19% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+..+ |+++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-----~~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT---MKHKGFAFVEYEVPEAAQLALEQMNSVMLGG-----RN 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC------CC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccCceEEEEeCCHHHHHHHHHHccCCeeCC-----ee
Confidence 589999999999999999999999999999999876543 7889999999999999999999999999988 57
Q ss_pred EEEEeecCC
Q 025386 233 LRLQFSRNP 241 (253)
Q Consensus 233 L~V~~ak~~ 241 (253)
|+|.++...
T Consensus 100 l~v~~~~~~ 108 (216)
T 2qfj_A 100 IKVGRPSNI 108 (216)
T ss_dssp CEEECCSCC
T ss_pred EEEecCCCc
Confidence 999888654
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=121.39 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=60.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH---cCcee
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL---QGYRM 223 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L---nG~~i 223 (253)
+++|||+|||+++|+++|+++|++||.|. ++++.+..+...|+++|||||+|++.++|++||+.| +|..|
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 58999999999999999999999999998 777755543222688999999999999999999999 66644
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=1e-15 Score=134.92 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCCCCHHHHH----HhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
++++|||+|||+++|+++|+ ++|++||.|.+|+++.. |+++|||||+|.+.++|++|++.|||..|.+
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 79 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCC--
Confidence 36899999999999999966 89999999999998752 7788999999999999999999999999998
Q ss_pred CCCccEEEEeecCCC
Q 025386 228 PDSKFLRLQFSRNPG 242 (253)
Q Consensus 228 ~~~r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 80 ---~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 ---KPMRIQYAKTDS 91 (282)
T ss_pred ---cEEEEEEeccCc
Confidence 579999997753
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=3.9e-16 Score=114.41 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=63.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCC----C-------cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 220 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~f----G-------~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 220 (253)
+.++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 36899999999999999999999999 8 8999988744 369999999999999999 9999
Q ss_pred ceeCCCCCCCccEEEE
Q 025386 221 YRMDEDDPDSKFLRLQ 236 (253)
Q Consensus 221 ~~i~g~~~~~r~L~V~ 236 (253)
..|.+ +.|+|+
T Consensus 75 ~~~~g-----~~l~V~ 85 (87)
T 2hzc_A 75 IIFQG-----QSLKIR 85 (87)
T ss_dssp CEETT-----EECEEE
T ss_pred CEECC-----eEEEEe
Confidence 99998 578886
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.5e-15 Score=116.02 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCC-----CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025386 152 ASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 152 ~~~tLfV~nLp~-----~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.++.. .++++||+||+|.+.++|++|++.|||..+.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFGG- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 478999999963 2378999999999999999999876432 15789999999999999999999999999998
Q ss_pred CCCCccEEEEeecC
Q 025386 227 DPDSKFLRLQFSRN 240 (253)
Q Consensus 227 ~~~~r~L~V~~ak~ 240 (253)
|.|+|+|+..
T Consensus 84 ----r~i~v~~a~~ 93 (105)
T 2pe8_A 84 ----RVVKACFYNL 93 (105)
T ss_dssp ----EECEEEECCH
T ss_pred ----cEEEEEEcCH
Confidence 7899999864
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=4.1e-15 Score=131.00 Aligned_cols=76 Identities=30% Similarity=0.629 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC-CCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~-g~~~~~ 230 (253)
++++|||+|||+++++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|. +
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g----- 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQN----- 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC-----
Confidence 46899999999999999999999999999999998554 369999999999999999999999999 6
Q ss_pred ccEEEEeecC
Q 025386 231 KFLRLQFSRN 240 (253)
Q Consensus 231 r~L~V~~ak~ 240 (253)
+.|+|+|+|.
T Consensus 273 ~~l~v~~akk 282 (282)
T 3pgw_A 273 NAMKISFAKK 282 (282)
T ss_pred CEEEEEEecC
Confidence 5899999974
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=2.1e-15 Score=123.41 Aligned_cols=77 Identities=22% Similarity=0.378 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++++++|+++|++||.|..+ ... ++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEETT-----E
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 46899999999999999999999999987655 221 7788999999999999999999999999998 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|++..
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 8999999763
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.8e-16 Score=123.17 Aligned_cols=79 Identities=9% Similarity=0.129 Sum_probs=70.8
Q ss_pred CEEEEeCC----CCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCC----HHH----HHHHHH--HHc
Q 025386 154 STLYVEGL----PADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PAC----AATALS--ALQ 219 (253)
Q Consensus 154 ~tLfV~nL----p~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~----~~~----A~~Al~--~Ln 219 (253)
+.|||+|| |+.+++++|+++|++||+|.+++++.++.+ |+++|||||+|.+ +++ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T---g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS---ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT---CCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999999999999876 9999999999996 333 788888 789
Q ss_pred CceeCCCCCCCccEEEEeecC
Q 025386 220 GYRMDEDDPDSKFLRLQFSRN 240 (253)
Q Consensus 220 G~~i~g~~~~~r~L~V~~ak~ 240 (253)
|..|++ +.|+|.+-+.
T Consensus 80 g~~I~G-----r~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMG-----FKFEVILNKH 95 (136)
T ss_dssp CEEETT-----EEEEEEECCT
T ss_pred CCeecC-----cEEEEEECcc
Confidence 999999 7899998765
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.5e-15 Score=126.63 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.. ++++|||||+|++.++|++|++.++ ..|.+ +.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-----r~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPG-QKYKE-----TD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTT-CEETT-----EE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCC-CeECC-----EE
Confidence 47999999999999999999999999999999987653 7889999999999999999997665 58888 68
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.|++.
T Consensus 179 l~V~~~~~ 186 (193)
T 2voo_A 179 LLILFKDD 186 (193)
T ss_dssp CEEEETTT
T ss_pred EEEEEhHH
Confidence 99999875
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=2.4e-15 Score=129.65 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCC-CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~-~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
++++|||+|||+ ++++++|+++|++||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~g----- 99 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHG----- 99 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeECC-----
Confidence 468999999999 99999999999999999999998664 3699999999999999999999999988
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 100 ~~l~v~~a~~~ 110 (229)
T 2adc_A 100 KPIRITLSKHQ 110 (229)
T ss_dssp SBCEEECCSCC
T ss_pred eEEEEEEecCc
Confidence 57999999864
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.9e-15 Score=133.00 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCCC---------CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025386 152 ASSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 222 (253)
Q Consensus 152 ~~~tLfV~nLp~~v---------te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 222 (253)
.++||||+||+.++ +|++|+++|++||.|.+|+|+.. ||||||+|.+.++|+.|+++|||..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 46899999999998 79999999999999999999854 3699999999999999999999999
Q ss_pred e------------CCCCCCCccEEEEeecCC
Q 025386 223 M------------DEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 223 i------------~g~~~~~r~L~V~~ak~~ 241 (253)
| .+ +.|+|.||+..
T Consensus 204 l~~~~~~e~~~~~~g-----r~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREG-----TGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGS-----CCCEEEECC--
T ss_pred EeccccccccccCCC-----CEEEEEEccCC
Confidence 9 44 68999999874
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.59 E-value=1.8e-15 Score=122.39 Aligned_cols=78 Identities=17% Similarity=0.336 Sum_probs=68.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+++|||+|||+++|+++|+++|++||.|.+|+++.+..+ |+++|||||+|.+.++|++|++. +..+.+ +.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~--~~~~~g-----~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT---GRSRGFGFLSFEKPSSVDEVVKT--QHILDG-----KV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTT---SSCCSCEEEEESSTHHHHHHHHS--CCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCC---CCccceEEEEEccHHHHHHHHhc--ccccCC-----eE
Confidence 589999999999999999999999999999999877544 88999999999999999999984 567776 56
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
|+|.++..
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 77777654
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=2.1e-15 Score=128.96 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcE--EEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i--~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
++++|||+|||+++|+++|+++|++||.| .+++++.++ ++++|||||+|++.++|.+||..|||+.|.+...
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~- 195 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG- 195 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC-
Confidence 36899999999999999999999999999 899988664 4456899999999999999999999999988632
Q ss_pred CccEEEEee
Q 025386 230 SKFLRLQFS 238 (253)
Q Consensus 230 ~r~L~V~~a 238 (253)
..+|.|.|+
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 246777765
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=5.5e-15 Score=130.31 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCCC-CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~v-te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
..++|||+|||+++ |+++|+++|++||.|.+++|+.+.. |+++|||||+|.+.++|.+|++.|||..|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----- 253 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGG----- 253 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETT-----
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCC-----
Confidence 36899999999995 9999999999999999999987753 8899999999999999999999999999988
Q ss_pred ccEEEEeecCCC
Q 025386 231 KFLRLQFSRNPG 242 (253)
Q Consensus 231 r~L~V~~ak~~~ 242 (253)
+.|+|+|++...
T Consensus 254 ~~l~v~~a~~~~ 265 (284)
T 3smz_A 254 SHLRVSFCAPGP 265 (284)
T ss_dssp EECEEEECCSSS
T ss_pred eEEEEEEecCCC
Confidence 689999998754
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=1e-14 Score=121.84 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCC-cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC-CCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~-g~~~~ 229 (253)
++++|||+|||+++++++|+++|++|| .|.+|+++.+. +|||||+|.+.++|++|++.|||..|. +
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g---- 186 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGEN---- 186 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSC----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCC----
Confidence 468999999999999999999999999 99999997543 369999999999999999999999998 5
Q ss_pred CccEEEEeecCC
Q 025386 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
+.|+|+|++++
T Consensus 187 -~~l~v~~a~~~ 197 (198)
T 1qm9_A 187 -HHLRVSFSKST 197 (198)
T ss_dssp -CSCCEEEECCC
T ss_pred -CeEEEEeeccc
Confidence 57999999874
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.8e-14 Score=124.15 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCC-cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC-CCCCC
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPD 229 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~-g~~~~ 229 (253)
++++|||+|||+++++++|+++|++|| .|.+|+++.+. +|||||+|.+.++|++|++.|||..|. +
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g---- 217 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGEN---- 217 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--------TTCEEEEESSHHHHHHHHHHHTTCBSSSS----
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--------CcEEEEEECCHHHHHHHHHHHCCCccCCC----
Confidence 368999999999999999999999999 99999997542 369999999999999999999999998 5
Q ss_pred CccEEEEeecCC
Q 025386 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
+.|+|+|++++
T Consensus 218 -~~l~v~~a~~~ 228 (229)
T 2adc_A 218 -HHLRVSFSKST 228 (229)
T ss_dssp -CBCEEEECSSC
T ss_pred -CeEEEEEecCC
Confidence 58999999874
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-14 Score=110.03 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCCCCCC-----------HHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025386 151 DASSTLYVEGLPADST-----------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 151 ~~~~tLfV~nLp~~vt-----------e~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
.++++|+|.||....+ +++|+++|++||.|.+|.|. ++ .++|||||+|.+.++|++|++.||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~------~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR------HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT------CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC------CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3479999999954432 58999999999999999663 32 256899999999999999999999
Q ss_pred CceeCCCCCCCccEEEEeecCC
Q 025386 220 GYRMDEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 220 G~~i~g~~~~~r~L~V~~ak~~ 241 (253)
|..|.+ ++|+|+|++..
T Consensus 86 g~~~~g-----r~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGG-----RQITAQAWDGT 102 (112)
T ss_dssp TCEETT-----EECEEEECCSC
T ss_pred CCEECC-----cEEEEEEeCCC
Confidence 999998 68999999774
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=8.9e-15 Score=129.47 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCC
Q 025386 152 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 230 (253)
Q Consensus 152 ~~~tLfV~nLp~~-vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~ 230 (253)
..++|||+|||++ +++++|+++|++||.|..|+|+.+...+ |+++|||||+|.+.++|.+|+ .|||..|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~t--g~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----- 280 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEH--SFNNCCAFMVFENKDSAERAL-QMNRSLLGN----- 280 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT-----
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcC--CCCceEEEEEeCCHHHHHHHH-HhcCCEECC-----
Confidence 4689999999999 9999999999999999999998765311 678899999999999999999 999999998
Q ss_pred ccEEEEeecCC
Q 025386 231 KFLRLQFSRNP 241 (253)
Q Consensus 231 r~L~V~~ak~~ 241 (253)
+.|+|+|++..
T Consensus 281 ~~i~V~~a~~k 291 (292)
T 2ghp_A 281 REISVSLADKK 291 (292)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEecCC
Confidence 68999999863
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=6.5e-15 Score=123.09 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=69.9
Q ss_pred CCEEEEeCCCC-CCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 153 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~-~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
+++|||+|||+ ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHG-----K 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTTHHHHHHHHHHTTCCCSS-----C
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCeecC-----e
Confidence 58999999999 99999999999999999999998654 3699999999999999999999999988 5
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|+|++..
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 7999999864
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1.7e-15 Score=123.86 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=69.0
Q ss_pred CCCCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCC
Q 025386 150 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 229 (253)
Q Consensus 150 ~~~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~ 229 (253)
+.+.++|||+|||+++|+++|+++|++||.+..+.+.... . |+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~-~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 80 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-T---GTNRKFGYVDFESAEDLEKAL-ELTGLKVFG---- 80 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEE-E---ETTTTEEEEEESSHHHHHHHH-HGGGEEETT----
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECC-C---CccccEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3447899999999999999999999999887663332222 2 678899999999999999999 599999998
Q ss_pred CccEEEEeecCC
Q 025386 230 SKFLRLQFSRNP 241 (253)
Q Consensus 230 ~r~L~V~~ak~~ 241 (253)
+.|+|++++..
T Consensus 81 -~~l~v~~~~~~ 91 (175)
T 1fje_B 81 -NEIKLEKPKGR 91 (175)
T ss_dssp -EEEEEECCCCS
T ss_pred -eEEEEecCCCc
Confidence 68999999865
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.5e-14 Score=126.09 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
.++|||+|||+++|+++|+++|++||.|..++++.+..+ |+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT---GQSKGYGFAEYMKKDSAARAKSDLLGKPLGP-----RT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC---CccceEEEEEECCHHHHHHHHHHhCCCEeCC-----cE
Confidence 479999999999999999999999999999999876644 8899999999999999999999999999988 68
Q ss_pred EEEEeecCCC
Q 025386 233 LRLQFSRNPG 242 (253)
Q Consensus 233 L~V~~ak~~~ 242 (253)
|+|.|+....
T Consensus 167 i~v~~a~~~~ 176 (284)
T 3smz_A 167 LYVHWTDAGQ 176 (284)
T ss_dssp CEEEECCGGG
T ss_pred EEEEECCCCC
Confidence 9999997653
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=3.5e-14 Score=124.76 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
..++|||+|||+++|+++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..|.+ +
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~~i~g-----~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---------RGFGFIRLESRTLAEIAKAELDGTILKS-----R 86 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CcEEEEEECCHHHHHHHHHHcCCcEECC-----c
Confidence 3689999999999999999999999999999998633 3699999999999999999999999988 6
Q ss_pred cEEEEeecC
Q 025386 232 FLRLQFSRN 240 (253)
Q Consensus 232 ~L~V~~ak~ 240 (253)
.|+|.|+..
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 899999875
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=8.8e-14 Score=122.15 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc-CceeCCCCCCCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln-G~~i~g~~~~~r 231 (253)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|.+|++.|| +..+.... .+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~--~r 169 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTT--PR 169 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS--CC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC--Cc
Confidence 57999999999999999999999999999999997753 8899999999999999999999995 45544221 26
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
+|.|.++...
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 8999999764
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=6.4e-14 Score=107.97 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCEEEEeCC--CCCCC--------HHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025386 152 ASSTLYVEGL--PADST--------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 152 ~~~tLfV~nL--p~~vt--------e~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
++++|.+.|+ |.++. +++|+++|++||.|.+|+|+.+...+. ++++||+||+|.+.++|++|++.|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3689999998 43443 368999999999999999986653211 357899999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeecC
Q 025386 222 RMDEDDPDSKFLRLQFSRN 240 (253)
Q Consensus 222 ~i~g~~~~~r~L~V~~ak~ 240 (253)
.+.+ |.|+|+|+..
T Consensus 83 ~f~G-----R~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFAN-----RVVVTKYCDP 96 (105)
T ss_dssp EETT-----EECEEEEECH
T ss_pred EeCC-----CEEEEEEeCH
Confidence 9998 7899999853
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=4.7e-14 Score=130.08 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=67.6
Q ss_pred CCCCCCEEEEeC--CCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025386 149 PPDASSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 149 p~~~~~tLfV~n--Lp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
...++++|||+| |++.+||++|+++|++||.|.+|++... ||||||+|++.++|++|+++|||..+.+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~---------kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT---------CSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 345579999999 5889999999999999999999877532 47999999999999999999999999543
Q ss_pred CCCCccEEEEeec
Q 025386 227 DPDSKFLRLQFSR 239 (253)
Q Consensus 227 ~~~~r~L~V~~ak 239 (253)
.-.+.+|.|.|++
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 2111268888885
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=5.1e-14 Score=124.57 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCC-cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 231 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r 231 (253)
.++|||+|||+++++++|+++|++|| .|..|+++.+.. |+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 187 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEG-----Y 187 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 58999999999999999999999999 999999986653 6788999999999999999999999999988 6
Q ss_pred cEEEEeecCC
Q 025386 232 FLRLQFSRNP 241 (253)
Q Consensus 232 ~L~V~~ak~~ 241 (253)
.|+|.|+...
T Consensus 188 ~l~v~~a~~~ 197 (292)
T 2ghp_A 188 TLVTKVSNPL 197 (292)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEECCCC
Confidence 8999999765
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.1e-14 Score=111.96 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=63.6
Q ss_pred EEeCCCCCCCHHHHHHhh------------cCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025386 157 YVEGLPADSTKREVAHIF------------RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 224 (253)
Q Consensus 157 fV~nLp~~vte~~L~~lF------------~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~ 224 (253)
.+.+|++++++++|+++| ++||.|.+|+|+.+.. ++++|||||+|.+.++|++|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 367888888888887777 9999999999986543 688999999999999999999999999999
Q ss_pred CCCCCCccEEEEee
Q 025386 225 EDDPDSKFLRLQFS 238 (253)
Q Consensus 225 g~~~~~r~L~V~~a 238 (253)
+ |+|+|+|+
T Consensus 95 G-----r~i~v~~s 103 (104)
T 1jmt_A 95 G-----QPIHAELS 103 (104)
T ss_dssp T-----EECCEEEC
T ss_pred C-----EEEEEEEc
Confidence 8 78999986
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-13 Score=104.12 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCEEEEeCCC-------CCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025386 153 SSTLYVEGLP-------ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 153 ~~tLfV~nLp-------~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.++|-|.-.. .++++++|+++|++||.|.+|+|+ ++++|||||+|++.++|++|++.+++ +.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 3566665543 458999999999999999999998 23568999999999999999998665 344
Q ss_pred CCCCCccEEEEeecCCCC
Q 025386 226 DDPDSKFLRLQFSRNPGP 243 (253)
Q Consensus 226 ~~~~~r~L~V~~ak~~~~ 243 (253)
++|+|+|++.+..
T Consensus 80 -----~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 -----NPLKISWLEGQPQ 92 (100)
T ss_dssp -----SBCEEECSSCCCC
T ss_pred -----CeEEEEEccCCCC
Confidence 5899999988643
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=8.4e-14 Score=113.06 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC----C-------cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f----G-------~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
+++|||+|||+++|+++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .||+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---------~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---------TTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---------CCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 5899999999999999999999999 6 677776643 3479999999999999999 89999
Q ss_pred eeCCCCCCCccEEEEeecCC
Q 025386 222 RMDEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 222 ~i~g~~~~~r~L~V~~ak~~ 241 (253)
.+.+ +.|+|.+++..
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQG-----QSLKIRRPHDY 88 (172)
T ss_dssp EETT-----EECEEECCSSC
T ss_pred EecC-----ceeeecCCccc
Confidence 9988 67999998764
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.2e-13 Score=114.67 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC----C-------cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f----G-------~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
+++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 5899999999999999999999999 4 56665553 33579999999999999999 89999
Q ss_pred eeCCCCCCCccEEEEeecCC
Q 025386 222 RMDEDDPDSKFLRLQFSRNP 241 (253)
Q Consensus 222 ~i~g~~~~~r~L~V~~ak~~ 241 (253)
.|.+ +.|+|.+++..
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQG-----QSLKIRRPHDY 88 (198)
T ss_dssp EETT-----EEEEEECCCCC
T ss_pred EEcC-----ceEEEeCCCCC
Confidence 9998 68999998764
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=3e-13 Score=106.54 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCC--CC---CHHHHHHhhcCCCcEEEEEEeecCCc-cCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025386 152 ASSTLYVEGLPA--DS---TKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 152 ~~~tLfV~nLp~--~v---te~~L~~lF~~fG~i~~vrl~~~~~~-~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
++++|+|.|+-. ++ .+++|++.|++||.|.+|+|+.+... ...++++||+||+|.+.++|.+|++.|||..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 368999999842 22 36899999999999999999966431 1125678999999999999999999999999998
Q ss_pred CCCCCccEEEEeecC
Q 025386 226 DDPDSKFLRLQFSRN 240 (253)
Q Consensus 226 ~~~~~r~L~V~~ak~ 240 (253)
|.|+|+|+..
T Consensus 99 -----R~i~v~~~~~ 108 (118)
T 3ue2_A 99 -----RKVVAEVYDQ 108 (118)
T ss_dssp -----EECEEEEECH
T ss_pred -----cEEEEEEcCh
Confidence 7899999853
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=7.8e-12 Score=97.88 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCCCCCEEEEeCCCCCC----------CHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHH
Q 025386 149 PPDASSTLYVEGLPADS----------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 218 (253)
Q Consensus 149 p~~~~~tLfV~nLp~~v----------te~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L 218 (253)
++.++++|.+.|+=..- .+++|++.|++||.|.+|.|.... ++||+||+|.+.++|++|++.|
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHh
Confidence 34457899999973321 134789999999999999886432 3689999999999999999999
Q ss_pred cCceeCCCCCCCccEEEEeec
Q 025386 219 QGYRMDEDDPDSKFLRLQFSR 239 (253)
Q Consensus 219 nG~~i~g~~~~~r~L~V~~ak 239 (253)
||..+.+ |.|+|+|+.
T Consensus 76 nG~~f~G-----R~i~v~~~~ 91 (114)
T 3s6e_A 76 HGRWFAG-----KMITAAYVP 91 (114)
T ss_dssp TTCEETT-----EECEEEEEC
T ss_pred CCCEECC-----EEEEEEEEc
Confidence 9999998 789999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=85.87 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=60.3
Q ss_pred CEEEEeCCCC----CCCH----HHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025386 154 STLYVEGLPA----DSTK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 154 ~tLfV~nLp~----~vte----~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.||+|.-++. +.-. .+|.+.|++||.|+.++++.++ +||+|.+.++|.+|++ |||.++.+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 6888877662 2323 5789999999999999998653 8999999999999998 99999999
Q ss_pred CCCCCccEEEEeecCC
Q 025386 226 DDPDSKFLRLQFSRNP 241 (253)
Q Consensus 226 ~~~~~r~L~V~~ak~~ 241 (253)
|.|+|++++..
T Consensus 76 -----r~LkV~lkt~d 86 (91)
T 2dnr_A 76 -----RTITIALKSPS 86 (91)
T ss_dssp -----EEEEEEECCCS
T ss_pred -----eEEEEEeCCCC
Confidence 78999999865
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=4.5e-10 Score=88.92 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCC-CCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCC-HHHHHHHHHHHc--CceeCCCCC
Q 025386 153 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN-PACAATALSALQ--GYRMDEDDP 228 (253)
Q Consensus 153 ~~tLfV~nLp~~-vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~-~~~A~~Al~~Ln--G~~i~g~~~ 228 (253)
...|||+||+++ +++++|+++|++||.|..|.++.... .|||+|.+ .++|++|+++|| +..|.+.
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~-- 86 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRNK-- 86 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS--
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeCc--
Confidence 589999999999 99999999999999999999987653 69999999 899999999995 6677763
Q ss_pred CCccEEEEee
Q 025386 229 DSKFLRLQFS 238 (253)
Q Consensus 229 ~~r~L~V~~a 238 (253)
.++++..
T Consensus 87 ---~~~~evL 93 (121)
T 1owx_A 87 ---EVTWEVL 93 (121)
T ss_dssp ---SEEEEEC
T ss_pred ---EEEEEEC
Confidence 4666543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=1.2e-09 Score=82.62 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=58.5
Q ss_pred CEEEEeCCCCC------CCH---HHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeC
Q 025386 154 STLYVEGLPAD------STK---REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 224 (253)
Q Consensus 154 ~tLfV~nLp~~------vte---~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~ 224 (253)
.||+|.-++.. .++ .+|.+.|++||.|+.++++.++ +||+|.+.++|.+||+ |||++|.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 68999888643 232 4688999999999999999663 9999999999999998 9999999
Q ss_pred CCCCCCccEEEEeec
Q 025386 225 EDDPDSKFLRLQFSR 239 (253)
Q Consensus 225 g~~~~~r~L~V~~ak 239 (253)
+ |.|+|++-.
T Consensus 84 G-----r~L~V~~k~ 93 (95)
T 1ufw_A 84 G-----RAVKISGPS 93 (95)
T ss_dssp T-----EEEEEECCC
T ss_pred C-----eEEEEeccC
Confidence 9 789998743
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=5.4e-09 Score=89.20 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=59.5
Q ss_pred CCHHHHHHhhcCCCcEEEEEEeecCCc-cCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEeec
Q 025386 165 STKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 239 (253)
Q Consensus 165 vte~~L~~lF~~fG~i~~vrl~~~~~~-~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~ak 239 (253)
-.+++|.+.|++||.|.+++|...... ...++++|++||+|.+.++|++|++.|||..+.+ |+|+++|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g-----r~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG-----RKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-----SBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-----eEEEEEEcC
Confidence 356789999999999999999844321 1225889999999999999999999999999999 789999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.7e-06 Score=66.99 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCC-----CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 227 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~f-----G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~ 227 (253)
.++|-+-|||..+++..|+.|.+++ |.|+.+.+.++.. -|+|+|.|...|.+|.-+|+|++|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~g-- 89 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQG-- 89 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEETT--
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeecC--
Confidence 4789999999999999999999999 9999999988763 59999999999999999999999997
Q ss_pred CCCccEEEE
Q 025386 228 PDSKFLRLQ 236 (253)
Q Consensus 228 ~~~r~L~V~ 236 (253)
|.|++.
T Consensus 90 ---r~Lr~g 95 (117)
T 2l9w_A 90 ---KVIRSG 95 (117)
T ss_dssp ---EEEEEE
T ss_pred ---eEEEec
Confidence 678874
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.94 E-value=1e-05 Score=62.04 Aligned_cols=74 Identities=20% Similarity=0.213 Sum_probs=62.8
Q ss_pred CEEEEeCCCCCC-C----HHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 154 STLYVEGLPADS-T----KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 154 ~tLfV~nLp~~v-t----e~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
++|+|.||+.++ + .+.++++|.+|+++.....++.-. -..|.|.++++|.+|...||+..+.+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g--- 73 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLG--- 73 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETT---
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecC---
Confidence 789999998765 2 257899999999998888775543 37899999999999999999999999
Q ss_pred CCccEEEEeecCC
Q 025386 229 DSKFLRLQFSRNP 241 (253)
Q Consensus 229 ~~r~L~V~~ak~~ 241 (253)
+.|+|-|+...
T Consensus 74 --~~~r~YFgq~~ 84 (104)
T 1wey_A 74 --KEMKLYFAQTL 84 (104)
T ss_dssp --EECEEECCCCS
T ss_pred --ceeEEEecCCC
Confidence 46999999853
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.72 E-value=0.00016 Score=54.75 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=47.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
...++| +.|.+....||.++|++||.| .|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 466777 999999999999999999965 56776554 59999999999999998874
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.70 E-value=0.00034 Score=52.33 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=66.5
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccE
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 233 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L 233 (253)
++|.|.+||+.+||+++.+.++....+.....+..+.... -..-.-|+|.|.+.+++..-.+.++|+.+.+.+-...+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-PHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-TCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 4789999999999999999999998877777765443210 112256999999999999999999999998765332344
Q ss_pred EEEeecCC
Q 025386 234 RLQFSRNP 241 (253)
Q Consensus 234 ~V~~ak~~ 241 (253)
.|+||-..
T Consensus 81 ~VE~AP~q 88 (91)
T 1uw4_A 81 IVEFAPFQ 88 (91)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 67777553
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.10 E-value=0.00078 Score=51.09 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=46.0
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
..|+| +.|.+....||.++|++||.| .|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 57777554 59999999999999999874
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0017 Score=49.58 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=48.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcC----C-CcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRP----F-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 225 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~----f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g 225 (253)
.++|.|.|||.+++++.|.-.|++ - |+|..|+... . -|+|+|.+.+.|++.|+. .-+.|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~----------~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-C----------GGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T----------EEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-C----------cEEEEEcChHHHHHHhcC-CcceecC
Confidence 579999999999999999999997 2 6788887764 1 599999999999988753 2344444
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.01 E-value=0.0019 Score=48.79 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCcc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 232 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~ 232 (253)
+-+|.|..||+.+||+++.+.++..-++.....+..+... .-..-.-|+|.|.+.++...-.+.++|+.+.+.+-..-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL-YPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS-CCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4579999999999999999988877655433333222211 001113599999999999999999999999876543345
Q ss_pred EEEEeecC
Q 025386 233 LRLQFSRN 240 (253)
Q Consensus 233 L~V~~ak~ 240 (253)
-.|+||-.
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 66777754
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0081 Score=46.92 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCC
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 226 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~ 226 (253)
.+.|-|-+.|... .+.|.+.|++||.|++....... .+-.|.|.++.+|++||. .||..|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~---------NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG---------NWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS---------SEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC---------CeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 4678898999874 66778899999999988863221 389999999999999994 599999863
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.21 E-value=0.0035 Score=49.77 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=28.2
Q ss_pred EEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025386 182 EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 182 ~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
.++|+.+. .+++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC-----ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45566554 357899999999999999999998864
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.96 E-value=0.003 Score=60.04 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHH
Q 025386 152 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 215 (253)
Q Consensus 152 ~~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al 215 (253)
+.++|||. .|..+++.+|.+.|++||.|.++.+-..+ | -|+.|||.+.+++..++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHH
Confidence 35789997 79999999999999999999998877544 2 49999999999888665
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.52 E-value=0.0053 Score=48.51 Aligned_cols=40 Identities=8% Similarity=-0.088 Sum_probs=35.8
Q ss_pred CccceEEEEEeCCHHHHHHHHHHH-cCceeCCCCCCCccEEEEeecC
Q 025386 195 GDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSKFLRLQFSRN 240 (253)
Q Consensus 195 G~~kG~aFVeF~~~~~A~~Al~~L-nG~~i~g~~~~~r~L~V~~ak~ 240 (253)
.+.+|+++|+|.+.++|++|++.| ||..+++ .|++.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G------~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG------EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC------EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC------ceecccccC
Confidence 456799999999999999999999 9999988 489998875
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.53 E-value=0.18 Score=48.21 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
...|+|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 3678887 88888999999999999954 66666443 79999999999999999885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.81 E-value=0.37 Score=38.08 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=46.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEE-Eee---------c-CCccCCCccceEEEEEeCCHHHHHHHHHHHcCc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVR-LVI---------K-ESKLRGGDPLILCFVDFENPACAATALSALQGY 221 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vr-l~~---------~-~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 221 (253)
...|.|-+.|.+.+ ..+.+.|++||.|.+-. +.. . ..+-+.=.-..+-.|+|+++.+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 35677888877654 45667899999997621 110 0 000000001248899999999999999 56999
Q ss_pred eeCCC
Q 025386 222 RMDED 226 (253)
Q Consensus 222 ~i~g~ 226 (253)
.|.+.
T Consensus 85 ii~G~ 89 (132)
T 3p3d_A 85 VFNGV 89 (132)
T ss_dssp EETTE
T ss_pred EeCcE
Confidence 99873
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=70.38 E-value=11 Score=25.77 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=41.9
Q ss_pred EEEEeC-CCCCCCHHHHHHhhcCCCc-----EEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCC
Q 025386 155 TLYVEG-LPADSTKREVAHIFRPFVG-----YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 228 (253)
Q Consensus 155 tLfV~n-Lp~~vte~~L~~lF~~fG~-----i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~ 228 (253)
+|||.. --..++..+|..++..-+. |-.+++... |.||+-.. +.|..+++.|++..+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~g--- 66 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVKG--- 66 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCcC---
Confidence 567632 1234677778877776544 334555322 79999876 66888999999999988
Q ss_pred CCccEEEEeec
Q 025386 229 DSKFLRLQFSR 239 (253)
Q Consensus 229 ~~r~L~V~~ak 239 (253)
+.++|+.++
T Consensus 67 --~~~~v~~~~ 75 (76)
T 2g0c_A 67 --KQLKVNKAN 75 (76)
T ss_dssp ---CCCEEECC
T ss_pred --ceEEEEECC
Confidence 457777664
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=58.65 E-value=2 Score=31.84 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCEEEEeCCCCCCCHHH
Q 025386 153 SSTLYVEGLPADSTKRE 169 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~ 169 (253)
.++|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 46799999999999874
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.08 E-value=68 Score=26.12 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=34.9
Q ss_pred CEEEEeCCCC-C--------CCHHHHHHhh--cCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHH
Q 025386 154 STLYVEGLPA-D--------STKREVAHIF--RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPAC 210 (253)
Q Consensus 154 ~tLfV~nLp~-~--------vte~~L~~lF--~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 210 (253)
-++.|-|+|. . ....+|.+.| +.|..++ |+.+..... ..|++.|+|.+--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-----h~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-----HSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-----EEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-----CceeEEEEecCChH
Confidence 3667788886 1 3457899977 9998765 555555543 34799999998433
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=29.37 E-value=98 Score=19.93 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=42.4
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCce
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 222 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 222 (253)
.+|.|.++.-.--...|+..+.. ..|..+.+-... +-+.|+|.+.++..++++.+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~---------~~~~v~~~~~~~i~~~i~~~-Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE---------AVVAGNKEDVDKYIKAVEAA-GYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE---------EEEEEEGGGHHHHHHHHHHT-TCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC---------CEEEEEECCHHHHHHHHHHc-CCc
Confidence 56889998877777888988888 888888775432 25788888666666777654 444
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.37 E-value=1.8e+02 Score=21.28 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHc
Q 025386 153 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 219 (253)
Q Consensus 153 ~~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 219 (253)
++-|-|-|+|..+-..++.-.....|---.+..+. |.|.|.|.+.++...|++.|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid-----------gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-----------GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-----------SCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-----------CeeEEEecCChHHHHHHHHHH
Confidence 46778889999999888877777666545555542 369999999999999998873
No 227
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=27.33 E-value=1.4e+02 Score=22.65 Aligned_cols=36 Identities=19% Similarity=0.039 Sum_probs=21.2
Q ss_pred CCcEEEEEEeecCCccCCCccceEEEEE-eCCHHHHHHHHHHHc
Q 025386 177 FVGYKEVRLVIKESKLRGGDPLILCFVD-FENPACAATALSALQ 219 (253)
Q Consensus 177 fG~i~~vrl~~~~~~~~gG~~kG~aFVe-F~~~~~A~~Al~~Ln 219 (253)
+-.|.+|++-.+-.. .-.||. |-+.++.+.++++|+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHH
Confidence 567899998766532 245666 555555444554443
No 228
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.21 E-value=97 Score=22.29 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=29.7
Q ss_pred cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025386 179 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 179 ~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
+|.+|++.+-.. .|+.|+||=|+|++ + -.+++.+|.+.+ ..|.|.+-
T Consensus 5 ~iTdVri~~~~~---~g~lka~asVt~dd------~-fvI~~ikVieg~---~GlFVaMP 51 (87)
T 2i9x_A 5 KVTDVRLRKIQT---DGRMKALVSITLDE------A-FVIHDLRVIEGN---SGLFVAMP 51 (87)
T ss_dssp CEEEEEEEECCS---SSSEEEEEEEEETT------T-EEEEEEEEEEET---TEEEEECC
T ss_pred EEEEEEEEEcCC---CCCEEEEEEEEECC------E-EEEeeEEEEECC---CceEEECC
Confidence 477888875543 28899999999986 1 245555554432 24555543
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.25 E-value=59 Score=27.90 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=25.0
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEe
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~ 186 (253)
..+.|+|||++++...|.+++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999976 555544443
No 230
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=22.00 E-value=35 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=25.5
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEe
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 186 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~ 186 (253)
..+.|+|||++++...|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865555554444
No 231
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.98 E-value=1.3e+02 Score=18.76 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=38.1
Q ss_pred CEEEEeCCCCCCCHHHHHHhhcCCCcEEEEEEeecCCccCCCccceEEEEEeCC---HHHHHHHHHH
Q 025386 154 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN---PACAATALSA 217 (253)
Q Consensus 154 ~tLfV~nLp~~vte~~L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~---~~~A~~Al~~ 217 (253)
.+|.|.++.-.--...|+..+.....|..+.+-.... -+.|+|.. .+...++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~---------~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE---------QAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT---------EEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC---------EEEEEECCCCCHHHHHHHHHH
Confidence 4677888876666778999999998898888764432 47788743 3444555543
No 232
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=21.48 E-value=28 Score=19.35 Aligned_cols=7 Identities=57% Similarity=0.919 Sum_probs=4.6
Q ss_pred CCCCCCC
Q 025386 21 KRPRSDY 27 (253)
Q Consensus 21 ~~~~~~~ 27 (253)
||||++-
T Consensus 2 KR~R~~g 8 (26)
T 2zvk_U 2 KRPRPEG 8 (26)
T ss_pred CCCCccc
Confidence 6777654
No 233
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.01 E-value=1.2e+02 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=29.8
Q ss_pred cEEEEEEeecCCccCCCccceEEEEEeCCHHHHHHHHHHHcCceeCCCCCCCccEEEEee
Q 025386 179 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 238 (253)
Q Consensus 179 ~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~i~g~~~~~r~L~V~~a 238 (253)
.|.+|++..-... |+.|+||=|+|++ + -.+++.+|.+.+ ..|.|.+-
T Consensus 5 ~ITdVri~~i~~~---gklkA~aSVt~dd------~-fvI~dIkVieg~---~GlFVaMP 51 (100)
T 2ia9_A 5 EVTDVRLRRVNTD---GRMRAIASITLDH------E-FVVHDIRVIDGN---NGLFVAMP 51 (100)
T ss_dssp CEEEEEEEECCSS---SSEEEEEEEEETT------T-EEEEEEEEEEET---TEEEEECC
T ss_pred EEEEEEEEEcCCC---CCEEEEEEEEECC------E-EEEeeEEEEECC---CceEEECC
Confidence 5778888765432 8899999999986 1 244555554432 24555543
Done!