Query 025387
Match_columns 253
No_of_seqs 209 out of 579
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 5.4E-51 1.8E-55 345.0 14.0 168 2-169 2-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 6.8E-35 2.3E-39 274.4 7.0 170 22-193 210-389 (393)
3 3txn_A 26S proteasome regulato 99.4 1E-12 3.5E-17 123.8 11.6 159 24-187 221-389 (394)
4 4b4t_P 26S proteasome regulato 99.0 8.4E-10 2.9E-14 104.9 8.3 161 24-197 259-435 (445)
5 4b4t_R RPN7, 26S proteasome re 98.8 3.6E-08 1.2E-12 93.0 11.1 153 25-189 249-415 (429)
6 3t5x_A PCI domain-containing p 98.6 2.7E-08 9.1E-13 85.6 3.8 97 60-157 81-193 (203)
7 4b4t_Q 26S proteasome regulato 98.5 1.4E-07 4.6E-12 85.0 5.9 124 59-194 296-429 (434)
8 1ufm_A COP9 complex subunit 4; 98.3 1.1E-06 3.6E-11 65.7 7.1 62 94-157 15-76 (84)
9 4b4t_S RPN3, 26S proteasome re 97.8 1.7E-05 5.7E-10 77.0 5.8 94 60-154 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 97.6 2.2E-05 7.5E-10 75.1 3.3 95 62-157 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 93.6 0.1 3.4E-06 45.0 5.8 107 26-134 101-214 (229)
12 1wi9_A Protein C20ORF116 homol 92.0 0.19 6.4E-06 36.1 4.2 54 100-155 12-65 (72)
13 3df8_A Possible HXLR family tr 85.9 3.3 0.00011 31.0 7.7 81 93-182 26-107 (111)
14 2hzt_A Putative HTH-type trans 85.4 5.9 0.0002 29.2 8.9 69 107-180 25-94 (107)
15 1qbj_A Protein (double-strande 83.9 2.9 9.9E-05 30.2 6.2 58 95-155 13-70 (81)
16 1i1g_A Transcriptional regulat 80.4 1.1 3.9E-05 34.4 3.1 71 106-178 15-88 (141)
17 3r0a_A Putative transcriptiona 80.3 3.2 0.00011 31.7 5.6 82 102-188 34-118 (123)
18 1qgp_A Protein (double strande 80.1 4 0.00014 28.9 5.7 47 97-145 19-65 (77)
19 4a5n_A Uncharacterized HTH-typ 77.8 19 0.00065 28.0 9.6 76 96-180 28-106 (131)
20 1ub9_A Hypothetical protein PH 73.8 13 0.00046 26.0 7.2 39 107-147 28-66 (100)
21 2d1h_A ST1889, 109AA long hypo 73.8 17 0.00058 25.6 7.8 74 102-182 29-105 (109)
22 3t8r_A Staphylococcus aureus C 73.7 5 0.00017 31.5 5.2 57 95-154 14-70 (143)
23 3lwf_A LIN1550 protein, putati 72.8 6.6 0.00023 31.7 5.8 65 87-154 22-86 (159)
24 2cg4_A Regulatory protein ASNC 72.2 4.5 0.00015 31.6 4.6 47 100-148 13-62 (152)
25 2dbb_A Putative HTH-type trans 71.9 4 0.00014 31.8 4.2 47 100-148 14-63 (151)
26 1yyv_A Putative transcriptiona 71.9 16 0.00056 28.0 7.7 79 94-179 35-114 (131)
27 1z7u_A Hypothetical protein EF 71.9 27 0.00091 25.7 8.7 68 108-180 34-102 (112)
28 2fsw_A PG_0823 protein; alpha- 71.5 15 0.00052 26.8 7.2 66 107-179 36-104 (107)
29 2pn6_A ST1022, 150AA long hypo 71.3 9.2 0.00032 29.5 6.2 48 99-148 7-57 (150)
30 2p5v_A Transcriptional regulat 71.2 3.8 0.00013 32.4 4.0 42 105-148 20-64 (162)
31 2kko_A Possible transcriptiona 70.9 15 0.0005 27.1 7.0 63 108-180 37-99 (108)
32 2cfx_A HTH-type transcriptiona 70.8 3.7 0.00013 31.8 3.8 47 100-148 10-59 (144)
33 2y75_A HTH-type transcriptiona 69.9 13 0.00044 28.1 6.7 49 94-144 11-59 (129)
34 2ia0_A Putative HTH-type trans 69.8 3.9 0.00013 33.1 3.8 42 105-148 27-71 (171)
35 2gxg_A 146AA long hypothetical 69.6 19 0.00066 26.8 7.7 43 107-151 48-90 (146)
36 3bpv_A Transcriptional regulat 69.4 14 0.00048 27.3 6.7 46 107-154 41-86 (138)
37 2e1c_A Putative HTH-type trans 69.1 2.9 0.0001 33.9 2.9 41 105-147 37-80 (171)
38 3cuo_A Uncharacterized HTH-typ 68.7 15 0.0005 25.8 6.4 41 105-147 34-74 (99)
39 4b4t_T 26S proteasome regulato 68.3 9 0.00031 33.6 6.1 95 38-132 118-222 (274)
40 1lj9_A Transcriptional regulat 67.6 15 0.00053 27.4 6.7 42 108-151 42-83 (144)
41 2oqg_A Possible transcriptiona 66.7 33 0.0011 24.6 9.4 37 108-146 33-69 (114)
42 2cyy_A Putative HTH-type trans 66.5 3.4 0.00012 32.3 2.7 42 100-143 12-53 (151)
43 3i4p_A Transcriptional regulat 66.0 5.8 0.0002 31.5 4.1 48 99-148 7-57 (162)
44 3g3z_A NMB1585, transcriptiona 64.9 21 0.00073 26.7 7.0 40 109-150 45-84 (145)
45 1oyi_A Double-stranded RNA-bin 64.3 11 0.00038 27.3 4.9 45 93-143 18-62 (82)
46 1ylf_A RRF2 family protein; st 63.9 9.9 0.00034 29.8 5.0 48 95-145 17-64 (149)
47 2fbh_A Transcriptional regulat 61.9 23 0.00077 26.3 6.6 44 106-151 49-92 (146)
48 4aik_A Transcriptional regulat 60.6 27 0.00092 27.0 7.0 64 87-157 29-92 (151)
49 2f2e_A PA1607; transcription f 59.6 29 0.00098 27.0 7.0 42 107-150 35-76 (146)
50 1sfx_A Conserved hypothetical 59.6 41 0.0014 23.4 8.5 38 108-147 33-70 (109)
51 3jth_A Transcription activator 59.1 28 0.00095 24.6 6.4 39 108-148 35-73 (98)
52 1xn7_A Hypothetical protein YH 59.0 10 0.00035 27.0 3.8 42 99-142 6-47 (78)
53 1xd7_A YWNA; structural genomi 58.9 15 0.00051 28.6 5.2 34 111-146 25-58 (145)
54 3f6o_A Probable transcriptiona 58.2 18 0.00063 26.8 5.4 38 108-147 30-67 (118)
55 3k69_A Putative transcription 58.0 16 0.00055 29.3 5.4 55 95-153 15-69 (162)
56 4hbl_A Transcriptional regulat 57.5 18 0.00062 27.4 5.4 44 107-152 53-96 (149)
57 3deu_A Transcriptional regulat 56.2 27 0.00092 27.2 6.4 50 104-155 63-112 (166)
58 3kp7_A Transcriptional regulat 55.9 16 0.00055 27.7 4.9 44 106-151 48-93 (151)
59 2v79_A DNA replication protein 55.5 66 0.0022 24.9 8.5 72 96-179 37-111 (135)
60 3k0l_A Repressor protein; heli 55.3 22 0.00074 27.4 5.6 47 108-156 59-105 (162)
61 2vn2_A DNAD, chromosome replic 54.9 27 0.00092 26.6 6.0 75 95-179 36-111 (128)
62 3s2w_A Transcriptional regulat 54.8 18 0.00061 27.7 5.0 45 108-154 63-107 (159)
63 2htj_A P fimbrial regulatory p 54.0 28 0.00096 24.0 5.5 36 107-144 12-47 (81)
64 3bja_A Transcriptional regulat 53.8 16 0.00056 26.9 4.5 43 107-151 45-87 (139)
65 2eth_A Transcriptional regulat 52.0 30 0.001 26.3 5.9 42 108-151 57-98 (154)
66 2k02_A Ferrous iron transport 51.5 11 0.00038 27.5 3.1 44 99-144 6-49 (87)
67 2rdp_A Putative transcriptiona 51.0 25 0.00087 26.3 5.3 43 108-152 55-97 (150)
68 2jt1_A PEFI protein; solution 50.5 12 0.00041 26.6 3.0 34 107-142 22-55 (77)
69 2a61_A Transcriptional regulat 50.2 66 0.0023 23.6 7.5 46 107-154 45-90 (145)
70 2fbi_A Probable transcriptiona 49.9 61 0.0021 23.7 7.3 45 108-154 49-93 (142)
71 1uly_A Hypothetical protein PH 49.5 1.1E+02 0.0036 25.0 11.5 35 108-144 32-66 (192)
72 3nrv_A Putative transcriptiona 49.4 17 0.00057 27.3 4.0 43 107-151 52-94 (148)
73 2w25_A Probable transcriptiona 49.2 20 0.00068 27.6 4.4 37 106-144 18-54 (150)
74 2heo_A Z-DNA binding protein 1 48.6 20 0.00069 24.2 3.9 44 96-143 14-57 (67)
75 3oop_A LIN2960 protein; protei 48.0 23 0.0008 26.4 4.6 42 108-151 50-91 (143)
76 1s3j_A YUSO protein; structura 47.9 28 0.00097 26.2 5.1 42 107-150 49-90 (155)
77 3cjn_A Transcriptional regulat 47.5 55 0.0019 24.8 6.8 43 107-151 64-106 (162)
78 2p4w_A Transcriptional regulat 47.3 1.2E+02 0.004 25.0 13.3 38 108-147 27-64 (202)
79 3pqk_A Biofilm growth-associat 46.5 54 0.0019 23.2 6.3 39 108-148 35-73 (102)
80 2x4h_A Hypothetical protein SS 45.8 45 0.0016 24.8 6.0 55 86-144 10-64 (139)
81 3eco_A MEPR; mutlidrug efflux 45.8 46 0.0016 24.5 6.0 44 108-153 46-89 (139)
82 1u2w_A CADC repressor, cadmium 45.0 28 0.00094 26.1 4.5 38 107-146 54-91 (122)
83 2pg4_A Uncharacterized protein 44.7 31 0.001 24.3 4.6 45 96-142 16-62 (95)
84 3tgn_A ADC operon repressor AD 44.0 54 0.0018 24.3 6.1 43 110-154 52-94 (146)
85 1j5y_A Transcriptional regulat 43.9 44 0.0015 26.9 5.9 50 92-143 18-69 (187)
86 3gpv_A Transcriptional regulat 43.9 78 0.0027 24.7 7.2 97 109-220 16-132 (148)
87 1r1u_A CZRA, repressor protein 43.4 37 0.0013 24.5 4.9 37 108-146 38-74 (106)
88 3bj6_A Transcriptional regulat 43.1 40 0.0014 25.2 5.3 41 108-150 53-93 (152)
89 2nnn_A Probable transcriptiona 41.8 57 0.0019 23.8 5.9 44 108-153 51-94 (140)
90 1z05_A Transcriptional regulat 41.5 21 0.00072 32.6 4.0 71 71-143 13-85 (429)
91 1tbx_A ORF F-93, hypothetical 40.2 90 0.0031 21.8 6.6 42 107-150 20-65 (99)
92 3cdh_A Transcriptional regulat 39.4 93 0.0032 23.2 6.9 43 106-150 54-96 (155)
93 3boq_A Transcriptional regulat 39.2 28 0.00095 26.4 3.8 45 105-151 58-102 (160)
94 2hr3_A Probable transcriptiona 38.3 84 0.0029 23.1 6.5 43 107-151 48-90 (147)
95 1ku9_A Hypothetical protein MJ 38.0 1.2E+02 0.0039 22.2 10.3 45 108-154 40-85 (152)
96 2fa5_A Transcriptional regulat 37.0 41 0.0014 25.5 4.5 43 107-151 61-103 (162)
97 3gp4_A Transcriptional regulat 36.6 87 0.003 24.3 6.4 28 110-143 3-30 (142)
98 2nyx_A Probable transcriptiona 35.6 74 0.0025 24.5 5.9 43 108-152 58-100 (168)
99 1rz4_A Eukaryotic translation 35.1 2E+02 0.0069 24.2 10.1 77 56-132 96-175 (226)
100 2p7v_B Sigma-70, RNA polymeras 35.0 35 0.0012 22.5 3.3 28 107-136 23-50 (68)
101 3f6v_A Possible transcriptiona 34.9 96 0.0033 24.2 6.4 41 107-149 69-109 (151)
102 3bdd_A Regulatory protein MARR 34.1 57 0.0019 23.9 4.8 42 108-151 44-85 (142)
103 3u2r_A Regulatory protein MARR 33.1 1.6E+02 0.0054 22.4 7.9 49 107-157 60-108 (168)
104 1y0u_A Arsenical resistance op 32.9 61 0.0021 22.8 4.6 35 108-144 42-76 (96)
105 3hsr_A HTH-type transcriptiona 32.7 73 0.0025 23.6 5.3 47 106-154 47-93 (140)
106 1jgs_A Multiple antibiotic res 32.0 1.1E+02 0.0036 22.3 6.0 43 108-152 47-89 (138)
107 1tc3_C Protein (TC3 transposas 31.6 37 0.0013 19.9 2.8 22 110-132 22-43 (51)
108 1ku3_A Sigma factor SIGA; heli 31.3 50 0.0017 22.1 3.7 27 108-136 29-55 (73)
109 3c57_A Two component transcrip 30.9 54 0.0019 23.3 4.0 26 109-136 42-67 (95)
110 1z91_A Organic hydroperoxide r 30.4 41 0.0014 25.0 3.4 40 108-149 53-92 (147)
111 3fm5_A Transcriptional regulat 30.1 72 0.0025 23.8 4.8 49 103-153 48-96 (150)
112 3e6m_A MARR family transcripti 29.5 29 0.00099 26.6 2.4 42 108-151 66-107 (161)
113 3bro_A Transcriptional regulat 29.5 1.6E+02 0.0055 21.3 6.8 41 109-151 50-90 (141)
114 3hug_A RNA polymerase sigma fa 29.5 44 0.0015 23.4 3.3 26 109-136 53-78 (92)
115 2zqm_A Prefoldin beta subunit 29.4 1.3E+02 0.0045 21.9 6.1 42 154-195 55-96 (117)
116 2jsc_A Transcriptional regulat 29.3 89 0.003 23.0 5.1 38 108-147 33-70 (118)
117 3t5v_A Nuclear mRNA export pro 28.7 45 0.0015 29.8 3.8 61 72-132 177-247 (316)
118 1tty_A Sigma-A, RNA polymerase 27.9 60 0.0021 22.6 3.7 28 107-136 36-63 (87)
119 2qlz_A Transcription factor PF 27.9 61 0.0021 27.6 4.4 44 107-155 176-219 (232)
120 1q1h_A TFE, transcription fact 27.7 45 0.0015 24.0 3.1 38 105-144 29-66 (110)
121 2k6x_A Sigma-A, RNA polymerase 26.8 38 0.0013 23.3 2.4 39 100-139 14-56 (72)
122 3t72_q RNA polymerase sigma fa 26.7 58 0.002 23.9 3.5 28 107-136 37-64 (99)
123 3kor_A Possible Trp repressor; 25.9 94 0.0032 24.0 4.7 37 98-139 66-102 (119)
124 3ech_A MEXR, multidrug resista 25.6 52 0.0018 24.4 3.2 44 108-153 50-93 (142)
125 2qvo_A Uncharacterized protein 25.5 1.3E+02 0.0046 20.8 5.3 47 106-154 27-73 (95)
126 2o8x_A Probable RNA polymerase 24.8 1.4E+02 0.0048 19.0 6.5 26 109-136 31-56 (70)
127 3ulq_B Transcriptional regulat 24.7 82 0.0028 22.4 4.0 23 109-132 44-66 (90)
128 2bv6_A MGRA, HTH-type transcri 24.4 93 0.0032 22.8 4.5 43 107-151 49-91 (142)
129 1r1t_A Transcriptional repress 24.4 1.6E+02 0.0056 21.8 5.9 37 108-146 58-94 (122)
130 3nr7_A DNA-binding protein H-N 23.6 2.1E+02 0.0072 20.6 6.1 19 202-220 50-68 (86)
131 2wte_A CSA3; antiviral protein 23.4 1E+02 0.0035 26.2 5.0 45 107-155 164-208 (244)
132 1eij_A Hypothetical protein MT 23.3 32 0.0011 24.8 1.5 22 125-147 37-58 (80)
133 2lfw_A PHYR sigma-like domain; 23.2 58 0.002 25.0 3.2 27 108-136 108-134 (157)
134 2eqb_B RAB guanine nucleotide 22.4 2.4E+02 0.0083 20.9 7.4 27 194-220 66-92 (97)
135 1on2_A Transcriptional regulat 22.1 63 0.0021 24.1 3.1 42 101-144 14-55 (142)
136 2jpc_A SSRB; DNA binding prote 22.0 76 0.0026 20.0 3.1 23 109-132 13-35 (61)
137 2l16_A SEC-independent protein 21.7 66 0.0022 22.9 2.9 31 161-191 20-50 (78)
138 2fh0_A Hypothetical 16.0 kDa p 21.5 34 0.0012 24.8 1.3 23 124-147 34-56 (81)
139 2pex_A Transcriptional regulat 21.4 1E+02 0.0036 22.9 4.3 43 107-151 59-101 (153)
140 2qww_A Transcriptional regulat 21.2 69 0.0024 23.9 3.2 42 108-151 54-97 (154)
141 1je8_A Nitrate/nitrite respons 21.2 1.2E+02 0.0041 20.8 4.2 26 109-136 36-61 (82)
142 1r7j_A Conserved hypothetical 21.1 2.3E+02 0.0079 20.2 9.8 59 110-183 21-79 (95)
143 3f3x_A Transcriptional regulat 20.9 1.5E+02 0.0051 21.7 5.0 44 111-156 52-95 (144)
144 3nqo_A MARR-family transcripti 20.8 3E+02 0.01 21.4 8.0 64 86-156 38-102 (189)
145 3mzy_A RNA polymerase sigma-H 20.6 77 0.0026 23.5 3.3 27 108-136 123-149 (164)
146 1x3u_A Transcriptional regulat 20.4 1.4E+02 0.0047 19.7 4.3 27 108-136 30-56 (79)
147 1fse_A GERE; helix-turn-helix 20.2 1.4E+02 0.0049 19.2 4.3 23 109-132 26-48 (74)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-51 Score=344.99 Aligned_cols=168 Identities=79% Similarity=1.223 Sum_probs=158.7
Q ss_pred cHhHHHHHHHHHHHHhcccccHHHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhhh
Q 025387 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (253)
Q Consensus 2 ~~~~~~~~~l~~fl~lak~~~~~aa~~lI~~AL~~p~vf~F~eLL~~p~v~~L~~t~~~~~~~LL~iFa~Gt~~dy~~~~ 81 (253)
++|+++.++||||+.+||++++++|+++|++||.+|++|+|||||.+|+|++|++++++|+++||++|++|||.+|.+++
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCC
Q 025387 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (253)
Q Consensus 82 ~~l~~L~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rd 161 (253)
+.+|.|++.+.+|||+|||++||..+++|||++|+++|+|+|+++||+||||+||+.|||+|||||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 89999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred CCCCcHHH
Q 025387 162 LRPGQLGS 169 (253)
Q Consensus 162 l~~~q~~~ 169 (253)
|+++||++
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999963
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-35 Score=274.39 Aligned_cols=170 Identities=14% Similarity=0.320 Sum_probs=118.6
Q ss_pred cHHHHHHHHHHHhcCCCcccchhhhcCchhhhccC-CCchHHHHHHHHHhcCChhhHhh----hhCCCCCcchH---HHH
Q 025387 22 KGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKN----NAGHLPQLVPD---QVL 93 (253)
Q Consensus 22 ~~~aa~~lI~~AL~~p~vf~F~eLL~~p~v~~L~~-t~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~~L~~~---~~~ 93 (253)
+...|+.+++.||.+|++|+||+|+.+|.+++|++ +++.|+++||++|++||+.+|.+ +.+.+|.|.+. ..+
T Consensus 210 ~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~ 289 (393)
T 4b4t_O 210 RQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQ 289 (393)
T ss_dssp HHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHH
Confidence 34679999999999999999999999999999975 57999999999999999999976 34566766644 478
Q ss_pred HHHHHHhhhccc--CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHH
Q 025387 94 KLKQLTVLTLAE--TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (253)
Q Consensus 94 KLr~LtLlsLa~--~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~ 171 (253)
|+|.+++++|+. +++.|||++|+++|+|+ +++||+||| +||+.|+|+|+|||++++|+|+|++||+|+++||..|.
T Consensus 290 kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~ 367 (393)
T 4b4t_O 290 KICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMK 367 (393)
T ss_dssp HHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC-----------------
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHH
Confidence 999999999874 57899999999999997 999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025387 172 QTLSNWLTTSDNLLISIQEKIK 193 (253)
Q Consensus 172 ~~L~~W~~~~~~vl~~Ie~~i~ 193 (253)
++|..|+++|++++..|+++..
T Consensus 368 ~~L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 368 DRLVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998754
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.41 E-value=1e-12 Score=123.84 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhhh----hCCCCC---cc---hHHHH
Q 025387 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHLPQ---LV---PDQVL 93 (253)
Q Consensus 24 ~aa~~lI~~AL~~p~vf~F~eLL~~p~v~~L~~t~~~~~~~LL~iFa~Gt~~dy~~~----~~~l~~---L~---~~~~~ 93 (253)
..+.-++..+|..-+.+.+++++..|......+++..|+.+|+..|.+|++..|... .+.+.. +. ....+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 356667888888888999999999887665655667899999999999999999863 222221 11 23467
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHH
Q 025387 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (253)
Q Consensus 94 KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~ 173 (253)
+++...|+.+..++++|+++.|++.++++ ++++|.+|+ ++|..|.|.|+|||++++|++....+|+ ...+...+.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~ 375 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLET 375 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC----------------
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHH
Confidence 88899999999999999999999999996 999999999 9999999999999999999998776665 345556778
Q ss_pred HHHHHHHHHHHHHH
Q 025387 174 LSNWLTTSDNLLIS 187 (253)
Q Consensus 174 L~~W~~~~~~vl~~ 187 (253)
+.+|...++.++..
T Consensus 376 l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 376 IQSMGKVVDTLYQK 389 (394)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877653
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=8.4e-10 Score=104.86 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhHhh----hhCCCC---Cc---------
Q 025387 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKN----NAGHLP---QL--------- 87 (253)
Q Consensus 24 ~aa~~lI~~AL~~p~vf~F~eLL~~p~v~~L~~t~~~~~~~LL~iFa~Gt~~dy~~----~~~~l~---~L--------- 87 (253)
.+...+|...+.+|..-.++.++.-+.... ...+...+..|+.+|..+.+..|.. +...+. ..
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence 356667778888888888888886543211 1123567899999999999887764 222111 11
Q ss_pred chHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcH
Q 025387 88 VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQL 167 (253)
Q Consensus 88 ~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~ 167 (253)
.....+.++...|..++..++.|+++.|++.|+++ ++++|.++. ++|..|.|.|+|||++|+|++....+
T Consensus 338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~-------- 407 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN-------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC--------
Confidence 12346677778888999999999999999999997 999999999 99999999999999999887654321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025387 168 GSMIQTLSNWLTTSDNLLISIQEKIKWADS 197 (253)
Q Consensus 168 ~~l~~~L~~W~~~~~~vl~~Ie~~i~~a~~ 197 (253)
-.+.|..|.+++++++..|+.-.+-.++
T Consensus 408 --~~~~l~~W~~~i~~l~~~v~k~~~lI~k 435 (445)
T 4b4t_P 408 --SSQLLNEWSHNVDELLEHIETIGHLITK 435 (445)
T ss_dssp ------------------------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357899999999999999765555554
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.6e-08 Score=92.96 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCcccc-hhhhcCchhhhcc-CCC-chHHHHHHHHHhcCChhhHhhh-----hCC------CCCcchH
Q 025387 25 ALGSVIVEATSQPSLFAF-SEILAVPNIAEFE-GTE-NSKYLDMLRLFAHGTWSDYKNN-----AGH------LPQLVPD 90 (253)
Q Consensus 25 aa~~lI~~AL~~p~vf~F-~eLL~~p~v~~L~-~t~-~~~~~~LL~iFa~Gt~~dy~~~-----~~~------l~~L~~~ 90 (253)
.+.-.+.-++..++--.+ ..++.-|.+...- ..+ ..++.+++..|-.+.+..|... ... +.+-...
T Consensus 249 ~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~ 328 (429)
T 4b4t_R 249 IATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADF 328 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHH
Confidence 344455555555444332 2355556554433 222 3567788888888988886531 111 1122345
Q ss_pred HHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHH
Q 025387 91 QVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSM 170 (253)
Q Consensus 91 ~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l 170 (253)
..+.+|...++.++.++++|+++.+++.++++ +.++|.++. +.|..|-|.|||||++|+|++....+|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~~~giv~~~~~d~~~--------- 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDRVNGIVETNRPDNKN--------- 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECC--------------
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcCCCCEEEECCCCchh---------
Confidence 78999999999999999999999999999997 999999999 9999999999999999999988776664
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025387 171 IQTLSNWLTTSDNLLISIQ 189 (253)
Q Consensus 171 ~~~L~~W~~~~~~vl~~Ie 189 (253)
...+.|.+..+.+++.|+
T Consensus 398 -~~y~~~i~~gd~Ll~riq 415 (429)
T 4b4t_R 398 -AQYHLLVKQGDGLLTKLQ 415 (429)
T ss_dssp -------------------
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 234445555555555444
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.57 E-value=2.7e-08 Score=85.56 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhcCChhhHhhhh----CCCC-CcchHHHHHHHHHHhhhccc------CCcccChHHHHHHcCCC-----C
Q 025387 60 SKYLDMLRLFAHGTWSDYKNNA----GHLP-QLVPDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----N 123 (253)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~~----~~l~-~L~~~~~~KLr~LtLlsLa~------~~k~Isy~~I~~~L~I~-----~ 123 (253)
..+.+|...+..||+..|.+.- +.+. .-.--.+.|+|.+.+.+|.. ++..||++.|+.+|++. +
T Consensus 81 ~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 81 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 3588999999999999998622 1111 11112468888888877765 68899999999999652 5
Q ss_pred hHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025387 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (253)
Q Consensus 124 ~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~ 157 (253)
.+|||.+|. .+|+.|.|+|+||+.++++.++..
T Consensus 161 ~~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 161 IDEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 899999999 899999999999999999988754
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.4e-07 Score=85.02 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=79.3
Q ss_pred chHHHHHHHHHhcCChhhHhhhhCC----CCC------cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHH
Q 025387 59 NSKYLDMLRLFAHGTWSDYKNNAGH----LPQ------LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELE 128 (253)
Q Consensus 59 ~~~~~~LL~iFa~Gt~~dy~~~~~~----l~~------L~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE 128 (253)
..++..++..|..+++..|...... +.. ........++...+..++..++.|+++.|++.|+++ ++++|
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 4678889999999999998863211 111 113345677888899999999999999999999997 99999
Q ss_pred HHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025387 129 DFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKW 194 (253)
Q Consensus 129 ~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~~ 194 (253)
.+|. ++|..|.|.|+|||.+++|++.....++ .....|.+.++++...++.....
T Consensus 375 ~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd~L~~k 429 (434)
T 4b4t_Q 375 GKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVDQLFEK 429 (434)
T ss_dssp HHHH-HHHHHTSSCCEEETTTTEEECC---------------------------------------
T ss_pred HHHH-HHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999986554443 23455666666655555544333
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.35 E-value=1.1e-06 Score=65.69 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=54.1
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025387 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (253)
Q Consensus 94 KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~ 157 (253)
++..-.|..+++.++.|+++.|++.++++ .+++|.++. ++|..|-|.|+|||++++|.+...
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCS
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCc
Confidence 34444555677899999999999999998 999999999 999999999999999999987543
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=1.7e-05 Score=77.04 Aligned_cols=94 Identities=12% Similarity=0.239 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhcCChhhHhhh----hCC-CCCcchHHHHHHHHH----HhhhcccCCcccChHHHHHHcCCCChHHHHHH
Q 025387 60 SKYLDMLRLFAHGTWSDYKNN----AGH-LPQLVPDQVLKLKQL----TVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (253)
Q Consensus 60 ~~~~~LL~iFa~Gt~~dy~~~----~~~-l~~L~~~~~~KLr~L----tLlsLa~~~k~Isy~~I~~~L~I~~~~evE~l 130 (253)
.+|+.|..+|..|++..|.+. ... ...=+-..+.++|+. -|..+...+..||+++|+..|++++.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 569999999999999999862 111 111111234444443 34556667899999999999999878899999
Q ss_pred HHHHhHhcCccEEEecCCCCEEEE
Q 025387 131 LINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 131 lI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
|- ++|+.|.|+|+|||.++.|..
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997753
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.63 E-value=2.2e-05 Score=75.08 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChhhHhhh----hCC-CCCcc-hHHHHHHHHHHhhhcc----------cCCcccChHHHHHHcCC----
Q 025387 62 YLDMLRLFAHGTWSDYKNN----AGH-LPQLV-PDQVLKLKQLTVLTLA----------ETNKVLPYDELMEELDV---- 121 (253)
Q Consensus 62 ~~~LL~iFa~Gt~~dy~~~----~~~-l~~L~-~~~~~KLr~LtLlsLa----------~~~k~Isy~~I~~~L~I---- 121 (253)
+..|...+..||+..|.+. ... +..=. --.+.|+|++++-.|. .+...||++.|+.+|++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 7889999999999999873 211 11112 3446777776543332 23479999999999984
Q ss_pred ----------------CChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025387 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (253)
Q Consensus 122 ----------------~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~ 157 (253)
.+.+|||.+|. .+|+.|+|+|+||+.++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 24889999999 899999999999999999998765
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.63 E-value=0.1 Score=45.03 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCCcccchhhhc-CchhhhccCCC-chHHHHHHHHHhcCChhhHhhhhCCCCC-----cchHHHHHHHHH
Q 025387 26 LGSVIVEATSQPSLFAFSEILA-VPNIAEFEGTE-NSKYLDMLRLFAHGTWSDYKNNAGHLPQ-----LVPDQVLKLKQL 98 (253)
Q Consensus 26 a~~lI~~AL~~p~vf~F~eLL~-~p~v~~L~~t~-~~~~~~LL~iFa~Gt~~dy~~~~~~l~~-----L~~~~~~KLr~L 98 (253)
+..++.. |.-.++-.|.-.+. +|.-..+++++ -...+++-+.+..|+|..|-......|. +.+-...++|.-
T Consensus 101 ~~~LL~l-L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~ 179 (229)
T 4b0z_A 101 GLNLLYL-LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNE 179 (229)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4444443 33334555543332 33222223333 2456789999999999998775444453 223457788888
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHH
Q 025387 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINE 134 (253)
Q Consensus 99 tLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~ 134 (253)
.+-+++..+..||.+++++.|+++|.++++.++- +
T Consensus 180 ~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 180 IATCAEKVYSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp HHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 8888888889999999999999999999999988 6
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.95 E-value=0.19 Score=36.14 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=46.4
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025387 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (253)
Q Consensus 100 LlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~ 155 (253)
++.....+++++.++||.++++. ..++-+-|- +....|.|.|-||...+-++|+
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEec
Confidence 34555678999999999999998 777777777 8888999999999999998886
No 13
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=85.90 E-value=3.3 Score=31.01 Aligned_cols=81 Identities=11% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHH
Q 025387 93 LKLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (253)
Q Consensus 93 ~KLr~LtLlsLa~~~k~Isy~~I~~~L-~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~ 171 (253)
.|-|.+.|..|......++|.+|++.+ +|+ ..-|=.-+= .....|+|.-+.+ .++.+--.-.++. +....
T Consensus 26 ~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~--r~~~y~LT~~G~~-----l~~~l 96 (111)
T 3df8_A 26 KKYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG--QITTYALTEKGMN-----VRNSL 96 (111)
T ss_dssp STTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES--SSEEEEECHHHHH-----HHHHH
T ss_pred CccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec--CcEEEEECccHHH-----HHHHH
Confidence 344554555555444446699999999 897 777766666 7788999999888 2222211222332 44567
Q ss_pred HHHHHHHHHHH
Q 025387 172 QTLSNWLTTSD 182 (253)
Q Consensus 172 ~~L~~W~~~~~ 182 (253)
..+..|....+
T Consensus 97 ~~l~~w~~~~~ 107 (111)
T 3df8_A 97 MPLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77888877543
No 14
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=85.43 E-value=5.9 Score=29.17 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=48.3
Q ss_pred CcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025387 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (253)
Q Consensus 107 ~k~Isy~~I~~~L-~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (253)
....++.+|++.+ +++ ...|=..|= .....|+|..+-+..++....-+.++. + .++-.....+..|...
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~ 94 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGAN 94 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHH
Confidence 3578999999999 997 777776666 788899999998876654433333332 1 2234556777788754
No 15
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.87 E-value=2.9 Score=30.17 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025387 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (253)
Q Consensus 95 Lr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~ 155 (253)
.+.|.++.-..+++.+++.+||+.|+++ ...|...|- +....|+|.-. +.....-.|.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i~ 70 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEEe
Confidence 3345555533456799999999999997 899999888 88889998643 3444444443
No 16
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.41 E-value=1.1 Score=34.37 Aligned_cols=71 Identities=15% Similarity=0.320 Sum_probs=42.5
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk---IDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~ 178 (253)
.+..+|+.+|++.++++ ...+=..+= .....|+|.+. +|...--..++....-.+.+.....+.+.|..|-
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence 34568999999999997 777766666 77778999765 3332111111110000113356667777777763
No 17
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=80.28 E-value=3.2 Score=31.68 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=55.1
Q ss_pred hcccCCcc-cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC--CCEEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 025387 102 TLAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL--RRCFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (253)
Q Consensus 102 sLa~~~k~-Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~--~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~ 178 (253)
.|...... ++-.+|++.++++ ...|-..|= .....|+|.-.-+.. .+..++..+.+. .+-.+.+...+..|.
T Consensus 34 ~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~d~~~~~~~y~~~~~---~~~~~~i~~~~~~~~ 108 (123)
T 3r0a_A 34 SFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNLDGGGYVYIYKIYSK---NQIRNIIQKIVQSWA 108 (123)
T ss_dssp HHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEECTTSCEEEEEEECCH---HHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCccCCCcceEEEecCCH---HHHHHHHHHHHHHHH
Confidence 34444455 9999999999997 888877766 788899998765443 233333333221 122455788899999
Q ss_pred HHHHHHHHHH
Q 025387 179 TTSDNLLISI 188 (253)
Q Consensus 179 ~~~~~vl~~I 188 (253)
+.+...++.+
T Consensus 109 ~~~~~~l~~~ 118 (123)
T 3r0a_A 109 DRLGQELKEW 118 (123)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHHHHHH
Confidence 8887766544
No 18
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.07 E-value=4 Score=28.90 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 025387 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (253)
Q Consensus 97 ~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkI 145 (253)
.|.++.-...+..+++.+||+.|+++ ...|...|= +....|+|.+.-
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 44555444446689999999999998 899998877 888999998864
No 19
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=77.81 E-value=19 Score=28.00 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCE-EEEEe-ecCCCCCCCcHHHHHH
Q 025387 96 KQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRC-FEVQF-AAGRDLRPGQLGSMIQ 172 (253)
Q Consensus 96 r~LtLlsLa~~~k~Isy~~I~~~L-~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~-v~V~~-~~~Rdl~~~q~~~l~~ 172 (253)
+.+.|..|. .+..+|.+|++.+ +|+ ...|=..|= +....|||.=+.+..... +.+.- -.||. +.....
T Consensus 28 ~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~-----l~~~l~ 98 (131)
T 4a5n_A 28 KGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKVEYSLTEFGRT-----LEPIVL 98 (131)
T ss_dssp HHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTTGGG-----GHHHHH
T ss_pred HHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeEEEEECHhHHH-----HHHHHH
Confidence 344444554 4679999999999 997 777777666 788899999887765443 33322 23444 455677
Q ss_pred HHHHHHHH
Q 025387 173 TLSNWLTT 180 (253)
Q Consensus 173 ~L~~W~~~ 180 (253)
.|..|...
T Consensus 99 ~l~~W~~~ 106 (131)
T 4a5n_A 99 QMKEWGES 106 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88899764
No 20
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=73.77 E-value=13 Score=25.97 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=31.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
+..+++.+|++.++++ ...|=..|= .....|+|...-+.
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 3479999999999997 777877665 77889999976643
No 21
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=73.76 E-value=17 Score=25.61 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=46.1
Q ss_pred hcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC---EEEEEeecCCCCCCCcHHHHHHHHHHHH
Q 025387 102 TLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR---CFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (253)
Q Consensus 102 sLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~---~v~V~~~~~Rdl~~~q~~~l~~~L~~W~ 178 (253)
.+...+..++..+|++.++++ ...|-..|= .....|+|...-+...+ ........ ++-+..+...+..|.
T Consensus 29 ~l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~~~gr~~~~~~l~-----~~~~~~~~~~~~~~~ 101 (109)
T 2d1h_A 29 KMVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGKKIGRPKYYYSIS-----SNILEKIRNDLLNCA 101 (109)
T ss_dssp HHHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC-------CCEEEEEC-----TTHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccCCCCCCCeeeecC-----HHHHHHHHHHHHHHH
Confidence 333335679999999999997 788877766 78889999876654332 11111111 244556666666666
Q ss_pred HHHH
Q 025387 179 TTSD 182 (253)
Q Consensus 179 ~~~~ 182 (253)
+.+.
T Consensus 102 ~~~~ 105 (109)
T 2d1h_A 102 KRME 105 (109)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 22
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=73.74 E-value=5 Score=31.53 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=40.9
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 95 Lr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
+|.|..+.....++.++-++|++.+++| ..-|+.++- ..-.+|+|... -..++-+..
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~L 70 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQL 70 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeee
Confidence 3444444433345679999999999998 999999988 88999999864 334444443
No 23
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=72.84 E-value=6.6 Score=31.67 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 87 L~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
++....-=+|.|..+.....++.+|-++|++.+++| ..-|+.++- ..-.+|+|...= ..++-+..
T Consensus 22 lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~r-G~~GGy~L 86 (159)
T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSIR-GAHGGYVL 86 (159)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-STTCEEEE
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEec-CCCCceEe
Confidence 454444445555555544456679999999999998 999999888 889999998763 33444333
No 24
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=72.15 E-value=4.5 Score=31.57 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.2
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025387 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (253)
Q Consensus 100 LlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G---kIDQ~ 148 (253)
|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|.+ .+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 33333445679999999999997 888877777 7888999986 56764
No 25
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.89 E-value=4 Score=31.79 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.5
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025387 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (253)
Q Consensus 100 LlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk---IDQ~ 148 (253)
|+.+...+..+|+.+|++.++++ ...|-..+- .....|+|.+. +|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 33333445679999999999997 888877777 78889999753 5654
No 26
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=71.87 E-value=16 Score=28.03 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 025387 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (253)
Q Consensus 94 KLr~LtLlsLa~~~k~Isy~~I~~~L-~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~ 172 (253)
+.+.+.|..|. ...++|.+|++.+ +|+ ..-|=..|= .....|+|.-+-+...+....-...+.- .++-....
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G---~~l~~~l~ 107 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLTPLG---EQVSDXVA 107 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEECHHH---HHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEECccH---HHHHHHHH
Confidence 44444444554 3578999999999 697 777777666 7888999999888765443333332211 11333455
Q ss_pred HHHHHHH
Q 025387 173 TLSNWLT 179 (253)
Q Consensus 173 ~L~~W~~ 179 (253)
.+..|..
T Consensus 108 ~l~~w~~ 114 (131)
T 1yyv_A 108 ALADWIE 114 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666764
No 27
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.85 E-value=27 Score=25.69 Aligned_cols=68 Identities=24% Similarity=0.135 Sum_probs=45.3
Q ss_pred cccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025387 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (253)
Q Consensus 108 k~Isy~~I~~~L-~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (253)
..+++.+|++.+ +++ ...|=..|= .....|+|...-+..++....-..++.- .++-.....+..|...
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT~~G---~~~~~~~~~l~~w~~~ 102 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLTPEG---YALYDALSSLCHWGET 102 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEECHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECHhH---HHHHHHHHHHHHHHHH
Confidence 468999999999 997 778877766 7888999999988765544333332210 1123334556667653
No 28
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=71.53 E-value=15 Score=26.80 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=45.6
Q ss_pred CcccChHHHHHHcC-CCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee--cCCCCCCCcHHHHHHHHHHHHH
Q 025387 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA--AGRDLRPGQLGSMIQTLSNWLT 179 (253)
Q Consensus 107 ~k~Isy~~I~~~L~-I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~--~~Rdl~~~q~~~l~~~L~~W~~ 179 (253)
...++|.+|++.++ ++ ...|=..|= .....|+|..+-+..++....-.. .+|. +-.....+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~-----l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSLTPLGEK-----VLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECHHHHT-----THHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEECccHHH-----HHHHHHHHHHHHH
Confidence 45789999999995 97 777777666 788899999988876544333332 2333 2344567777764
No 29
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=71.30 E-value=9.2 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=36.8
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025387 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (253)
Q Consensus 99 tLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G---kIDQ~ 148 (253)
.|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|.+ .+|..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHH
Confidence 344444556679999999999997 888877766 7888999987 56653
No 30
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=71.17 E-value=3.8 Score=32.40 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=33.5
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025387 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (253)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G---kIDQ~ 148 (253)
..+..+|+.+|++.++++ ...|-..+- .....|+|.+ .+|..
T Consensus 20 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 20 QENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeeecccCChH
Confidence 344569999999999997 888887777 8888999985 45543
No 31
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=70.89 E-value=15 Score=27.05 Aligned_cols=63 Identities=5% Similarity=0.032 Sum_probs=45.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~ 180 (253)
+.++..+|++.++++ ...|-..+= .....|+|..+-+.. .+. |. +.++.+..+...|..|...
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~gr--~~~--y~----l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREGT--RQY--YR----IAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEETT--EEE--EE----ESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC--EEE--EE----EChHHHHHHHHHHHHHhhH
Confidence 568999999999997 888877766 778899998775432 222 21 1234577788888888743
No 32
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=70.80 E-value=3.7 Score=31.84 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=35.7
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 025387 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (253)
Q Consensus 100 LlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk---IDQ~ 148 (253)
|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|++. +|..
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 33333445679999999999997 888887777 88889999864 5654
No 33
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=69.94 E-value=13 Score=28.09 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 94 KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
-++.|..+....+++.++-.+|++.+++| ..-|+..+- ..-..|+|...
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 34444444433346789999999999998 999999888 88889998754
No 34
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=69.79 E-value=3.9 Score=33.07 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.3
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025387 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (253)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G---kIDQ~ 148 (253)
..+..+|+.+|++.++++ ...|-..+- .....|+|.+ .+|..
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 344579999999999997 888877777 8888999975 45553
No 35
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=69.60 E-value=19 Score=26.77 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=35.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 5679999999999997 778877666 888899999887765443
No 36
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=69.41 E-value=14 Score=27.29 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=37.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEE
Confidence 4678999999999997 888877766 888899999888876555443
No 37
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.08 E-value=2.9 Score=33.85 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=32.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecC
Q 025387 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQ 147 (253)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G---kIDQ 147 (253)
..+..+||.+|++.++++ ...|-..+- .....|+|++ .+|.
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeeEEECH
Confidence 345679999999999997 888877776 7888999976 3554
No 38
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=68.75 E-value=15 Score=25.80 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=33.0
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025387 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
..+..++..+|++.++++ ...|-..+= .....|+|...-+.
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDA 74 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 445679999999999997 778877766 78889999876553
No 39
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.31 E-value=9 Score=33.64 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=67.9
Q ss_pred Ccccch-hhhcCchh-hhccCCCc-hHHHHHHHHHhcCChhhHhhh--hCCCCC-----cchHHHHHHHHHHhhhcccCC
Q 025387 38 SLFAFS-EILAVPNI-AEFEGTEN-SKYLDMLRLFAHGTWSDYKNN--AGHLPQ-----LVPDQVLKLKQLTVLTLAETN 107 (253)
Q Consensus 38 ~vf~F~-eLL~~p~v-~~L~~t~~-~~~~~LL~iFa~Gt~~dy~~~--~~~l~~-----L~~~~~~KLr~LtLlsLa~~~ 107 (253)
++-.|. +|-.+|.. .++.++++ ...+++-+.+..|+|.-|-+. .+..|. +.+-...++|.-.+-+++..+
T Consensus 118 ~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY 197 (274)
T 4b4t_T 118 NTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSY 197 (274)
T ss_dssp CSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 34445542 34444432 346788889999999988652 233343 334457899998888888889
Q ss_pred cccChHHHHHHcCCCChHHHHHHHH
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI 132 (253)
+.||.+.+++.|+.+|..|+.+|+-
T Consensus 198 ~~i~l~~~~~~L~F~s~~e~~~F~~ 222 (274)
T 4b4t_T 198 DFLPLSNIKALLFFNNEKETEKFAL 222 (274)
T ss_dssp SSCCHHHHHHHHTCCSHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999977
No 40
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.62 E-value=15 Score=27.35 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=34.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCc
Confidence 478999999999997 788877666 888899999888775443
No 41
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=66.69 E-value=33 Score=24.65 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=30.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkID 146 (253)
+.++..+|++.++++ ...|-..+= .....|+|.-.-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999997 788887766 7888999987655
No 42
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=66.55 E-value=3.4 Score=32.31 Aligned_cols=42 Identities=7% Similarity=0.256 Sum_probs=32.4
Q ss_pred hhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025387 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (253)
Q Consensus 100 LlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G 143 (253)
|+.+...+..+|+.+|++.++++ ...|-..+= .....|+|.+
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~ 53 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKK 53 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEE
Confidence 33333445679999999999997 888877766 7888899975
No 43
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=66.02 E-value=5.8 Score=31.52 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=37.1
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 025387 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (253)
Q Consensus 99 tLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G---kIDQ~ 148 (253)
.|+.+.+.+..+||.+|++.++++ ...|-.-+= +....|+|++ .+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 355555667789999999999997 888877766 7888999884 56654
No 44
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=64.90 E-value=21 Score=26.68 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=32.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~ 150 (253)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCC
Confidence 49999999999997 778877766 88889999977765544
No 45
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=64.27 E-value=11 Score=27.33 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025387 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (253)
Q Consensus 93 ~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G 143 (253)
.+.+.|.++. .. . +|+.+|+++|+|+ ...|-..|- ..-..|+|.-
T Consensus 18 ~~~~IL~lL~--~~-g-~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG--IE-G-ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS--SS-T-EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHHH--Hc-C-CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 4555566555 33 3 9999999999997 888888877 7778898875
No 46
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=63.94 E-value=9.9 Score=29.83 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=37.2
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 025387 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (253)
Q Consensus 95 Lr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkI 145 (253)
+|.|..+.. .+++.++-.+|++.++|| ..-|+.++- ..-.+|+|...=
T Consensus 17 l~~L~~La~-~~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKN-NPSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHH-SCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC-
T ss_pred HHHHHHHHh-CCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEcc
Confidence 444444443 245689999999999998 999999988 899999998643
No 47
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.94 E-value=23 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.110 Sum_probs=35.5
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBC
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccC
Confidence 45679999999999997 778877666 888899999887765443
No 48
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=60.60 E-value=27 Score=26.97 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025387 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (253)
Q Consensus 87 L~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~ 157 (253)
|++.+.. .|..|...+..++-.+|++.++++ ...|=..|= .....|+|.=.-|..++....-+.
T Consensus 29 Lt~~q~~-----vL~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~L 92 (151)
T 4aik_A 29 LTQTHWV-----TLYNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKL 92 (151)
T ss_dssp CCHHHHH-----HHHHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEE
T ss_pred CCHHHHH-----HHHHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhc
Confidence 5655443 333444445566778999999997 777776655 888899999999887765444443
No 49
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=59.61 E-value=29 Score=27.01 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=34.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~ 150 (253)
....+|.+|++.++|+ ..-|=..|= .....|+|..+-+...+
T Consensus 35 ~g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 3578999999999997 777776666 78889999999987765
No 50
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=59.61 E-value=41 Score=23.38 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=32.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
..++..+|++.++++ ...|-..|= .....|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 459999999999997 888887777 88999999987776
No 51
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=59.13 E-value=28 Score=24.60 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~ 148 (253)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 689999999999997 777776666 677899998875543
No 52
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.95 E-value=10 Score=27.02 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=33.4
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 025387 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (253)
Q Consensus 99 tLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~ 142 (253)
.|+.+....+.++.++|++.++++ ...|..-+- .....|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 455666678899999999999997 878877766 777778763
No 53
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=58.86 E-value=15 Score=28.59 Aligned_cols=34 Identities=3% Similarity=0.074 Sum_probs=30.6
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025387 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (253)
Q Consensus 111 sy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkID 146 (253)
+-++|++.++|| ..-|+.++- ..-.+|||...=.
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCSS
T ss_pred CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeecC
Confidence 999999999998 999999988 8999999986544
No 54
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=58.16 E-value=18 Score=26.82 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=31.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 567999999999997 777766666 67789999987773
No 55
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=58.04 E-value=16 Score=29.26 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025387 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (253)
Q Consensus 95 Lr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~ 153 (253)
+|.|..+... ++..+|-++|++.++|+ ..-|+..+- ..-.+|+|+.. -..++-+.
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~ 69 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT-VGKNGGYQ 69 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE-CSTTCEEE
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee-cCCCCCeE
Confidence 3444444432 35679999999999998 999999888 88899999765 33344333
No 56
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=57.46 E-value=18 Score=27.43 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=29.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v 152 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~ 96 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQ 96 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcce
Confidence 3678999999999997 777777666 8888999998877655543
No 57
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=56.24 E-value=27 Score=27.24 Aligned_cols=50 Identities=10% Similarity=-0.018 Sum_probs=32.8
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025387 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (253)
Q Consensus 104 a~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~ 155 (253)
...+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-
T Consensus 63 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l 112 (166)
T 3deu_A 63 HQLPPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRI 112 (166)
T ss_dssp HHSCSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEE
T ss_pred HHcCCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEE
Confidence 3334569999999999997 777777666 8888999998887766554333
No 58
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=55.94 E-value=16 Score=27.70 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=29.8
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE--ecCCCCE
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRC 151 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk--IDQ~~~~ 151 (253)
.+..++..+|++.++++ ...|=..|= .....|+|.-. -|..++.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCC
Confidence 35679999999999997 667776666 88889999963 3655544
No 59
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=55.52 E-value=66 Score=24.92 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=50.6
Q ss_pred HHHHhhhcccC-CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCEEEEEeecCCCCCCCcHHHHHH
Q 025387 96 KQLTVLTLAET-NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (253)
Q Consensus 96 r~LtLlsLa~~-~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G--kIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~ 172 (253)
-.|-|...... ..-.+.++||+.++++ ..+|...|= ..+..|+|.= +.|..++....-+. ..+.+
T Consensus 37 lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL----------~pL~e 104 (135)
T 2v79_A 37 LLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSL----------QPLWG 104 (135)
T ss_dssp HHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEEC----------HHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeH----------HHHHH
Confidence 33444444443 4568999999999997 999999888 9999999986 55666554444333 34677
Q ss_pred HHHHHHH
Q 025387 173 TLSNWLT 179 (253)
Q Consensus 173 ~L~~W~~ 179 (253)
+|..+..
T Consensus 105 kL~~~~~ 111 (135)
T 2v79_A 105 KLYEYIQ 111 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 60
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=55.28 E-value=22 Score=27.38 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=37.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~ 156 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-.
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~ 105 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVT 105 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeE
Confidence 469999999999997 777777665 88889999999887666544333
No 61
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=54.89 E-value=27 Score=26.60 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=47.2
Q ss_pred HHHHHhhhcccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHH
Q 025387 95 LKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (253)
Q Consensus 95 Lr~LtLlsLa~~~-k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~ 173 (253)
+-.+.|......+ .-++.++|++.++++ ..+|-..|= ..+..|+|.=+-+.... ++....-++..+.++
T Consensus 36 ~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~~~--------g~~~~~Ydl~pl~~k 105 (128)
T 2vn2_A 36 VLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTDEQ--------GIRNEKYTLEPLWEK 105 (128)
T ss_dssp HHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC------------------CEECHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEECCC--------CcEEEEEehHHHHHH
Confidence 3445555554433 348999999999997 999999877 89999999876654331 111122335556777
Q ss_pred HHHHHH
Q 025387 174 LSNWLT 179 (253)
Q Consensus 174 L~~W~~ 179 (253)
|..+..
T Consensus 106 L~~~~~ 111 (128)
T 2vn2_A 106 LVHHLY 111 (128)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766653
No 62
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=54.82 E-value=18 Score=27.73 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=34.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
..++..+|++.++++ ...|=..|= .....|+|.-+-|..++....
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~ 107 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYR 107 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeE
Confidence 568999999999997 778877666 888899999888776655433
No 63
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.03 E-value=28 Score=23.96 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=30.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
...++..+|++.++++ ...|-..+- .....|+|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3569999999999997 888887777 78889999853
No 64
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=53.76 E-value=16 Score=26.87 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCc
Confidence 4469999999999997 777777665 788899999887765443
No 65
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.03 E-value=30 Score=26.27 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=33.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcc
Confidence 369999999999997 777777665 888899999887664443
No 66
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=51.51 E-value=11 Score=27.53 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=35.3
Q ss_pred HhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 99 tLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
.|+.+....+.++.++|++.++++ ...|..-|- .....|+|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 455556678899999999999997 888887777 78888877644
No 67
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=51.02 E-value=25 Score=26.30 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=33.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v 152 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~ 97 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRV 97 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---C
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCcce
Confidence 469999999999997 778877666 8888999998877655543
No 68
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=50.49 E-value=12 Score=26.61 Aligned_cols=34 Identities=6% Similarity=0.222 Sum_probs=28.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~ 142 (253)
+..++..+|+++++++ ...|..-|- ..-..|+|.
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~ 55 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLE 55 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEE
Confidence 4789999999999995 888888777 777788875
No 69
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=50.23 E-value=66 Score=23.64 Aligned_cols=46 Identities=15% Similarity=0.022 Sum_probs=36.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~ 90 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYF 90 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEE
Confidence 3469999999999997 778877665 888899999988876665443
No 70
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=49.93 E-value=61 Score=23.68 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=36.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~ 93 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVY 93 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeE
Confidence 359999999999997 888887766 888999999888876655443
No 71
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=49.45 E-value=1.1e+02 Score=25.00 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=30.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
..+++.+|++.++++ ...|-.-|= .....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 569999999999997 778877666 78889999987
No 72
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=49.39 E-value=17 Score=27.35 Aligned_cols=43 Identities=2% Similarity=-0.083 Sum_probs=29.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
...++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 94 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKR 94 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3489999999999997 777777666 888899999876665543
No 73
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=49.22 E-value=20 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=30.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
.+..+|+.+|++.++++ ...|=..+= .....|+|.+.
T Consensus 18 ~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (150)
T 2w25_A 18 ADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGY 54 (150)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 44579999999999997 888877776 78889999754
No 74
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=48.63 E-value=20 Score=24.23 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025387 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (253)
Q Consensus 96 r~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G 143 (253)
+.|.++. ...+.++..+|++.|+++ ...|...|= ..-..|+|..
T Consensus 14 ~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 3444443 344679999999999998 888888766 6777788754
No 75
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=48.00 E-value=23 Score=26.39 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=32.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCc
Confidence 678999999999997 778877666 888999999887665443
No 76
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=47.89 E-value=28 Score=26.16 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=34.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~ 150 (253)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCC
Confidence 3468999999999997 788877766 88889999988776444
No 77
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=47.49 E-value=55 Score=24.79 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=33.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 3468999999999997 778877665 888899999877654433
No 78
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=47.25 E-value=1.2e+02 Score=24.96 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=31.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
+..++.+|++.++++ ...|=.-+= .....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 568999999999997 777776666 78889999998773
No 79
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=46.47 E-value=54 Score=23.22 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~ 148 (253)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 458999999999997 667766655 677889999876554
No 80
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=45.81 E-value=45 Score=24.81 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 86 QLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 86 ~L~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
.|++.+..-|+ .|..++..+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 10 ~lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred hcCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 45665555454 344555567789999999999997 777777666 77778998753
No 81
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=45.75 E-value=46 Score=24.47 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~ 153 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~ 89 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRK 89 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCee
Confidence 579999999999997 778877666 88889999988877655433
No 82
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=44.96 E-value=28 Score=26.08 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkID 146 (253)
.+.+++.+|++.++++ ...|-..|= .....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 4568999999999997 888877766 6778999987533
No 83
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=44.74 E-value=31 Score=24.33 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=32.5
Q ss_pred HHHHhhhc-ccCCcccChHHHHHHcCCCChHH-HHHHHHHHhHhcCccE
Q 025387 96 KQLTVLTL-AETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (253)
Q Consensus 96 r~LtLlsL-a~~~k~Isy~~I~~~L~I~~~~e-vE~llI~~AI~~gLI~ 142 (253)
+.+.++.+ ...+..++..+|++.++++ ... |=..|= .....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 34444433 3444479999999999997 777 766655 788899998
No 84
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=44.00 E-value=54 Score=24.25 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=29.0
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~ 94 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIF 94 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------C
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeE
Confidence 9999999999997 778877766 888999999888766665443
No 85
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=43.87 E-value=44 Score=26.91 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCc-cEE
Q 025387 92 VLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (253)
Q Consensus 92 ~~KLr~LtLlsLa~-~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gL-I~G 143 (253)
...-|...|+.+.. ..+.+|..+|++.|+++ .+.|-.-|- ..-..|+ |.+
T Consensus 18 ~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 18 VRQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 44556677777655 45679999999999997 777665544 4445687 765
No 86
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=43.87 E-value=78 Score=24.71 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=57.1
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE-EEecCCCCEEEEEeecCCCCCCCcHH----------------HHH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVR-GKLDQLRRCFEVQFAAGRDLRPGQLG----------------SMI 171 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~-GkIDQ~~~~v~V~~~~~Rdl~~~q~~----------------~l~ 171 (253)
.++..++++.+||+ .+.|-.|-= .|+|. ..-+..+. |.++.+++. .+.
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Ye~-----~Gll~p~~r~~~g~---------R~Y~~~dl~~l~~I~~lr~~G~sL~eIk 80 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYYDK-----QGLFPFLQRNEKGD---------RIFNEEALKYLEMILCLKNTGMPIQKIK 80 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHHHH-----TTCCTTCEECTTCC---------EEBCHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHHHH-----CCCCCCCcCCCCCC---------eecCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 58899999999997 888887722 47774 45554333 333444332 222
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 025387 172 QTLSNWL---TTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (253)
Q Consensus 172 ~~L~~W~---~~~~~vl~~Ie~~i~~a~~~~~~~~~~~~~~e~~v~~~k~~~ 220 (253)
.-|..|. ..+......+++++.......++-.+..+.++..++..+..+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 81 QFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233222 245556666777777776666666666667777776666655
No 87
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=43.44 E-value=37 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=30.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkID 146 (253)
..+++.+|++.++++ ...|-..+= .....|+|..+=+
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 458999999999997 778877666 6778899987654
No 88
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=43.05 E-value=40 Score=25.19 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=33.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~ 150 (253)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHA 93 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSST
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCcccc
Confidence 468999999999997 788877766 88889999988765443
No 89
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=41.78 E-value=57 Score=23.78 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=36.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~ 153 (253)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++...
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRL 94 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCee
Confidence 379999999999997 888887766 88899999988777655443
No 90
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=41.49 E-value=21 Score=32.59 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=39.2
Q ss_pred cCChhhHhhhhCCCC-C-cchHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025387 71 HGTWSDYKNNAGHLP-Q-LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (253)
Q Consensus 71 ~Gt~~dy~~~~~~l~-~-L~~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G 143 (253)
-||+.-|-+++.... . -+...++..-...|+.+...+..+|..+|++.++++ ...|-..+= +.+..|+|..
T Consensus 13 ~~~~~~~~~~~~m~~~~~~~~~~~r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~ 85 (429)
T 1z05_A 13 LGTENLYFQSNAMYMAQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHE 85 (429)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred cCccceeeehhhhhcccCCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEe
Confidence 366666666543221 1 122234444444566666667789999999999997 888887766 8888999875
No 91
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=40.23 E-value=90 Score=21.76 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=33.0
Q ss_pred CcccChHHH----HHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025387 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (253)
Q Consensus 107 ~k~Isy~~I----~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~ 150 (253)
+..++..+| ++.++++ ...|=..|= .....|+|.-.-|....
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~~ 65 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGEK 65 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCce
Confidence 467899999 8999997 777777655 77778999988887333
No 92
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.35 E-value=93 Score=23.24 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=31.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~ 150 (253)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDK 96 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC-----
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcC
Confidence 34579999999999997 778877766 88889999876665443
No 93
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=39.16 E-value=28 Score=26.43 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.3
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
..+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 58 ~~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 102 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRR 102 (160)
T ss_dssp HCTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC-------
T ss_pred HcCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCC
Confidence 345579999999999997 666666655 788889999876665444
No 94
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.27 E-value=84 Score=23.13 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=31.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R 90 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGR 90 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCC
Confidence 5679999999999997 778877666 888899999887765443
No 95
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=37.97 E-value=1.2e+02 Score=22.18 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=35.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC-EEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR-CFEV 154 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~-~v~V 154 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++ .+.+
T Consensus 40 ~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r~~~~ 85 (152)
T 1ku9_A 40 KPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERKNYYE 85 (152)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSSCEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCceEEEe
Confidence 469999999999997 777776665 78889999988766544 3444
No 96
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=37.01 E-value=41 Score=25.47 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=29.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999997 777877666 888899998776654443
No 97
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.56 E-value=87 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.8
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 025387 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (253)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G 143 (253)
++..++++.+||+ .+.|-.|-= .|+|.-
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye~-----~GLl~p 30 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYER-----IGLIPP 30 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHHH-----HTSSCC
T ss_pred CcHHHHHHHHCcC-HHHHHHHHH-----CCCCCC
Confidence 5788999999997 888887732 377765
No 98
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.61 E-value=74 Score=24.49 Aligned_cols=43 Identities=9% Similarity=-0.032 Sum_probs=34.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v 152 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~ 100 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRRE 100 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSC
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCe
Confidence 369999999999997 777777655 8888999998888765543
No 99
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=35.13 E-value=2e+02 Score=24.16 Aligned_cols=77 Identities=10% Similarity=0.029 Sum_probs=51.9
Q ss_pred CCCchHHHHHHHHHhcCChhhHhhhhCCCCCcc---hHHHHHHHHHHhhhcccCCcccChHHHHHHcCCCChHHHHHHHH
Q 025387 56 GTENSKYLDMLRLFAHGTWSDYKNNAGHLPQLV---PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 56 ~t~~~~~~~LL~iFa~Gt~~dy~~~~~~l~~L~---~~~~~KLr~LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI 132 (253)
+.+-..++.|=+.+-.|+|..|.+....-+++. +.-...+|.=..-.+...++.||.+.+++-|+..+..+++.|+-
T Consensus 96 ~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 96 ERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp STTHHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 344566788889999999999876433223222 12234445433333445688999999999996435899999987
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.99 E-value=35 Score=22.53 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
....||.+|++.++++ ...|...+- .|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3569999999999997 889988777 665
No 101
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=34.88 E-value=96 Score=24.22 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=31.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~ 149 (253)
.+..+..+|++.|+++ ...|=.-|= ....+|+|..+-+...
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRF 109 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCE
Confidence 3568999999999997 777766655 6778999998755433
No 102
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=34.10 E-value=57 Score=23.87 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=34.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
..++..+|++.++++ ...|-..|= .....|+|.-.-+..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999997 888887766 888899999887765443
No 103
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=33.15 E-value=1.6e+02 Score=22.36 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=36.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~ 157 (253)
+..++..+|++.++++ ...|=.+|= .....|+|.-.-|..++....-..
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 108 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVAL 108 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEE
Confidence 4689999999999997 667776655 888899999998887776554443
No 104
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=32.86 E-value=61 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=28.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
..++..+|++.++++ ...|-..|= .....|+|.-.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 458999999999997 777877666 77888999854
No 105
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=32.72 E-value=73 Score=23.56 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=33.5
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~ 93 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQ 93 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceee
Confidence 35689999999999997 778877766 888999999888776654433
No 106
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=31.97 E-value=1.1e+02 Score=22.29 Aligned_cols=43 Identities=19% Similarity=0.106 Sum_probs=35.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v 152 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~ 89 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRG 89 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSC
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCce
Confidence 468999999999997 788877666 8889999998887755543
No 107
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.56 E-value=37 Score=19.90 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=18.8
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 025387 110 LPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI 132 (253)
+++.+|++.|+|+ ...|..|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999997 888887754
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=31.31 E-value=50 Score=22.05 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=22.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
...||.+|++.++++ ...|...+- .|+
T Consensus 29 ~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 568999999999997 888888766 554
No 109
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.88 E-value=54 Score=23.33 Aligned_cols=26 Identities=4% Similarity=0.261 Sum_probs=21.5
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
-.+|.+|++.|+++ ...|...+- .+.
T Consensus 42 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 42 GLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 999988766 543
No 110
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=30.37 E-value=41 Score=24.96 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=32.9
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~ 149 (253)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..+
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d 92 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEED 92 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSC
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCC
Confidence 378999999999997 888887766 8888999998776533
No 111
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=30.10 E-value=72 Score=23.81 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred cccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025387 103 LAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (253)
Q Consensus 103 La~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~ 153 (253)
|......++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 48 l~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~ 96 (150)
T 3fm5_A 48 ACEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNK 96 (150)
T ss_dssp HHHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC----------
T ss_pred HHhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchh
Confidence 33444569999999999997 777777666 88889999988777665544
No 112
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=29.54 E-value=29 Score=26.61 Aligned_cols=42 Identities=7% Similarity=-0.014 Sum_probs=32.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR 107 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQR 107 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCC
Confidence 479999999999997 777777666 888899999887765443
No 113
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=29.46 E-value=1.6e+02 Score=21.26 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=33.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCC
Confidence 79999999999997 778877666 888899999877765443
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.46 E-value=44 Score=23.43 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=21.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
-.+|.+|++.|+|+ ...|...+- .|+
T Consensus 53 g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 53 GWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888888776 654
No 115
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.39 E-value=1.3e+02 Score=21.88 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=25.8
Q ss_pred EEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025387 154 VQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWA 195 (253)
Q Consensus 154 V~~~~~Rdl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~i~~a 195 (253)
|.+..|+.|=....+.....|..=.+.++..+..++.++...
T Consensus 55 vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l 96 (117)
T 2zqm_A 55 VYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKL 96 (117)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666777777766666666655555555544433
No 116
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=29.29 E-value=89 Score=22.98 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=30.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
+..++.+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 357899999999997 788877766 77789999876553
No 117
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.68 E-value=45 Score=29.83 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=42.6
Q ss_pred CChhhHhhhhCC--CCCcc----hHHHHHHHHHHhhhcccC----CcccChHHHHHHcCCCChHHHHHHHH
Q 025387 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAET----NKVLPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 72 Gt~~dy~~~~~~--l~~L~----~~~~~KLr~LtLlsLa~~----~k~Isy~~I~~~L~I~~~~evE~llI 132 (253)
|+|.-|-..-.. .|-|. +-....+|..+|-+++.. .+.+|.+.|++.|+.++.+|+++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 666665553322 34333 223678888777776653 36899999999999998999998865
No 118
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.93 E-value=60 Score=22.58 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
+...||.+|++.++++ ...|...+- .|+
T Consensus 36 ~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 3579999999999997 888988877 765
No 119
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=27.90 E-value=61 Score=27.56 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=36.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~ 155 (253)
+...+..+|++.++++ ..+|+.-+- +....|+|+ -..+++|.+.
T Consensus 176 ~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 176 NGRATVEELSDRLNLK-EREVREKIS-EMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp SSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEE---EETTTEEEEC
T ss_pred cCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeE---EecCCeEEec
Confidence 5789999999999998 999998887 899999998 3345556554
No 120
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=27.67 E-value=45 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.9
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 105 ~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
.++..++-.+|++.++++ ...|=..+- .....|+|...
T Consensus 29 ~~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345458999999999997 788877777 78889999865
No 121
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=26.85 E-value=38 Score=23.35 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=26.7
Q ss_pred hhhcccCCcccChHHHHHHcCC----CChHHHHHHHHHHhHhcC
Q 025387 100 VLTLAETNKVLPYDELMEELDV----TNVRELEDFLINECMYTG 139 (253)
Q Consensus 100 LlsLa~~~k~Isy~~I~~~L~I----~~~~evE~llI~~AI~~g 139 (253)
|+..+...+.|+|++|.+.|.- -+.+++|+++- ..-..|
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~-~L~~~g 56 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHE-ELEKHG 56 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHH-HHHHTC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHH-HHHHCC
Confidence 5556666678999999999852 24788888754 333344
No 122
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=26.73 E-value=58 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
....||.+|++.++|+ ..-|...+- .|+
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 4679999999999997 888888877 775
No 123
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=25.86 E-value=94 Score=24.01 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=25.9
Q ss_pred HHhhhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 025387 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (253)
Q Consensus 98 LtLlsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~g 139 (253)
+-|+.+...+ .||.+|+++++++ ..-|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 4555544443 9999999999997 888876 44 565443
No 124
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=25.57 E-value=52 Score=24.36 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=26.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~ 153 (253)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~ 93 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSF 93 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCee
Confidence 469999999999997 677776666 88889999988887665443
No 125
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=25.46 E-value=1.3e+02 Score=20.85 Aligned_cols=47 Identities=4% Similarity=-0.004 Sum_probs=32.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 025387 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (253)
Q Consensus 106 ~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V 154 (253)
++..++..+|++.++++ ...|=.+|= .....|+|.-.-|.....+.+
T Consensus 27 ~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp TTCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEE
Confidence 34459999999999997 777776665 788899994333433333433
No 126
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=24.83 E-value=1.4e+02 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.3
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
-.||.+|++.++++ ...|...+- .|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887765 554
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.70 E-value=82 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI 132 (253)
-.++.+|++.|+|+ ...|+..+-
T Consensus 44 G~s~~eIA~~L~iS-~~TV~~~~~ 66 (90)
T 3ulq_B 44 GFTNQEIADALHLS-KRSIEYSLT 66 (90)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46999999999997 888887765
No 128
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=24.45 E-value=93 Score=22.78 Aligned_cols=43 Identities=7% Similarity=0.178 Sum_probs=33.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcc
Confidence 3469999999999997 777777666 788899999887764443
No 129
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=24.41 E-value=1.6e+02 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkID 146 (253)
+..++.+|++.|+++ ...|-..|= .....|+|...-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 568999999999997 777776665 6777899987654
No 130
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=23.61 E-value=2.1e+02 Score=20.63 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 025387 202 DKKHRKDLEEKVEEAKKSL 220 (253)
Q Consensus 202 ~~~~~~~~e~~v~~~k~~~ 220 (253)
..+++++-++++++.++.+
T Consensus 50 ~~~~~~er~~Kl~~~~e~l 68 (86)
T 3nr7_A 50 AAAEVEERTRKLQQYREML 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555666678888998888
No 131
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=23.42 E-value=1e+02 Score=26.21 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=35.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~ 155 (253)
+..++..+|++.++++ ...|-..+= .....|+|... ...+.+.++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 3469999999999997 888888777 88889999876 334445544
No 132
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=23.27 E-value=32 Score=24.81 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 025387 125 RELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 125 ~evE~llI~~AI~~gLI~GkIDQ 147 (253)
+.||+.|| .....|-|.|+||.
T Consensus 37 ~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 67999999 88899999988874
No 133
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=23.24 E-value=58 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
.-+||.+||+.|+|+ +..|...+- .|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 358999999999997 999998877 664
No 134
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.36 E-value=2.4e+02 Score=20.91 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=18.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhc
Q 025387 194 WADSMNEMDKKHRKDLEEKVEEAKKSL 220 (253)
Q Consensus 194 ~a~~~~~~~~~~~~~~e~~v~~~k~~~ 220 (253)
.||.|-...++.+..++.+++.++..|
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666677777777776666
No 135
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.14 E-value=63 Score=24.14 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=31.6
Q ss_pred hhcccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 025387 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (253)
Q Consensus 101 lsLa~~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~Gk 144 (253)
+.+...+..++..+|++.++++ ...|=..|= .....|+|.-.
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 14 YMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3343444569999999999997 777776665 77888999765
No 136
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=22.03 E-value=76 Score=19.98 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=17.9
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI 132 (253)
-.|+.+|++.|+++ ...|...+=
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 36889999999997 777776544
No 137
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=21.65 E-value=66 Score=22.93 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=26.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025387 161 DLRPGQLGSMIQTLSNWLTTSDNLLISIQEK 191 (253)
Q Consensus 161 dl~~~q~~~l~~~L~~W~~~~~~vl~~Ie~~ 191 (253)
.|+|+.++.+...+..|.....+..+..++.
T Consensus 20 vfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e 50 (78)
T 2l16_A 20 IFGPSKLPEIGRAAGRTLLEFKSATKSLVSG 50 (78)
T ss_dssp HSCTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeCccHhHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4789999999999999999888877766544
No 138
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=21.49 E-value=34 Score=24.77 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhHhcCccEEEecC
Q 025387 124 VRELEDFLINECMYTGIVRGKLDQ 147 (253)
Q Consensus 124 ~~evE~llI~~AI~~gLI~GkIDQ 147 (253)
.+.||+.|| .....|-|.|+|+.
T Consensus 34 A~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 34 AQAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHHH-HHHHcCCCCCCcCH
Confidence 367999999 88889999888875
No 139
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=21.41 E-value=1e+02 Score=22.88 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=31.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 025387 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (253)
Q Consensus 107 ~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~ 151 (253)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 3568999999999997 778877766 888999999877654443
No 140
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=21.19 E-value=69 Score=23.90 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=32.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCE
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~G--kIDQ~~~~ 151 (253)
..++..+|++.++++ ...|-..|= .....|+|.- .-|..++.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 469999999999997 788887766 8889999998 66655443
No 141
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.18 E-value=1.2e+02 Score=20.79 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
-.+|.+|++.|+++ ...|...+- .+.
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 61 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVK-HML 61 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887665 443
No 142
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=21.12 E-value=2.3e+02 Score=20.16 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=39.8
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHH
Q 025387 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTSDN 183 (253)
Q Consensus 110 Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~~~~Rdl~~~q~~~l~~~L~~W~~~~~~ 183 (253)
++...|+..++++ .+-+-..+= .....|+|.=. .+.+.++- . =..+...+..|..-+.+
T Consensus 21 ~~~t~La~~~~ls-~~~~~~~l~-~L~~~GLI~~~----~~~~~LT~-k--------G~~~l~~l~~~~~~l~~ 79 (95)
T 1r7j_A 21 SPKTRIMYGANLS-YALTGRYIK-MLMDLEIIRQE----GKQYMLTK-K--------GEELLEDIRKFNEMRKN 79 (95)
T ss_dssp BCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE----TTEEEECH-H--------HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEE----CCeeEECh-h--------HHHHHHHHHHHHHHHHH
Confidence 9999999999997 888887655 78889999866 22344431 1 12355666666554443
No 143
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=20.87 E-value=1.5e+02 Score=21.70 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=35.2
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025387 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (253)
Q Consensus 111 sy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~ 156 (253)
+..+|++.++++ ...|=..|= .....|+|.-.-|..++....-.
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~ 95 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVE 95 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEE
Confidence 999999999997 777776655 88889999999888766544433
No 144
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=20.82 E-value=3e+02 Score=21.44 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=45.7
Q ss_pred CcchHHHHHHHHHHhhhccc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 025387 86 QLVPDQVLKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (253)
Q Consensus 86 ~L~~~~~~KLr~LtLlsLa~-~~k~Isy~~I~~~L~I~~~~evE~llI~~AI~~gLI~GkIDQ~~~~v~V~~ 156 (253)
.|++.+..-| ..|.. +...++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-.
T Consensus 38 ~lt~~q~~vL-----~~L~~~~~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~ 102 (189)
T 3nqo_A 38 ILTSRQYMTI-----LSILHLPEEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVK 102 (189)
T ss_dssp SSCHHHHHHH-----HHHHHSCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEE
T ss_pred cCCHHHHHHH-----HHHHhccCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEE
Confidence 3676654433 23333 35689999999999997 777777666 88899999999988766544433
No 145
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.61 E-value=77 Score=23.55 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
.-.||.+||+.|+++ ...|...+- .|.
T Consensus 123 ~g~s~~EIA~~lgis-~~tV~~~~~-ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKN-LKSIDNTIQ-RIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 457999999999997 888887766 654
No 146
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.40 E-value=1.4e+02 Score=19.71 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=21.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 025387 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (253)
Q Consensus 108 k~Isy~~I~~~L~I~~~~evE~llI~~AI 136 (253)
.-.++.+|++.++++ ...|...+- .+.
T Consensus 30 ~g~s~~eIA~~l~is-~~tV~~~~~-r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDIS-PRTVEVHRA-NVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 457999999999997 888887655 443
No 147
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.16 E-value=1.4e+02 Score=19.18 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.1
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 025387 109 VLPYDELMEELDVTNVRELEDFLI 132 (253)
Q Consensus 109 ~Isy~~I~~~L~I~~~~evE~llI 132 (253)
-.++.+|++.++++ ...|...+-
T Consensus 26 g~s~~eIA~~l~is-~~tV~~~~~ 48 (74)
T 1fse_A 26 DKTTKEIASELFIS-EKTVRNHIS 48 (74)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 35999999999997 777776544
Done!