Query 025388
Match_columns 253
No_of_seqs 241 out of 2347
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 5.4E-36 1.2E-40 234.9 10.3 95 158-253 1-95 (96)
2 COG0234 GroS Co-chaperonin Gro 100.0 2.4E-35 5.3E-40 231.2 9.4 94 59-153 1-95 (96)
3 PRK00364 groES co-chaperonin G 100.0 8.2E-34 1.8E-38 223.0 11.2 94 159-253 2-95 (95)
4 PTZ00414 10 kDa heat shock pro 100.0 1.5E-33 3.2E-38 223.7 10.6 96 152-253 4-99 (100)
5 PTZ00414 10 kDa heat shock pro 100.0 1.2E-33 2.6E-38 224.2 9.8 94 55-153 6-99 (100)
6 PRK00364 groES co-chaperonin G 100.0 8.3E-33 1.8E-37 217.3 10.5 94 59-153 1-95 (95)
7 cd00320 cpn10 Chaperonin 10 Kd 100.0 1.4E-32 3E-37 215.2 10.3 93 159-252 1-93 (93)
8 PRK14533 groES co-chaperonin G 100.0 2.4E-32 5.2E-37 213.5 9.7 90 59-153 1-90 (91)
9 PRK14533 groES co-chaperonin G 100.0 5.6E-32 1.2E-36 211.4 10.4 89 159-253 2-90 (91)
10 cd00320 cpn10 Chaperonin 10 Kd 100.0 1.4E-31 3.1E-36 209.5 10.1 92 60-152 1-93 (93)
11 PF00166 Cpn10: Chaperonin 10 100.0 1.2E-30 2.6E-35 203.7 10.7 93 159-252 1-93 (93)
12 KOG1641 Mitochondrial chaperon 100.0 8.9E-31 1.9E-35 207.0 7.1 102 151-252 2-103 (104)
13 PF00166 Cpn10: Chaperonin 10 100.0 1.2E-29 2.6E-34 198.0 9.9 92 60-152 1-93 (93)
14 KOG1641 Mitochondrial chaperon 99.9 2.8E-28 6E-33 192.8 6.4 97 55-152 5-103 (104)
15 KOG1197 Predicted quinone oxid 79.8 1.6 3.5E-05 41.2 3.0 45 76-129 51-99 (336)
16 PF08240 ADH_N: Alcohol dehydr 76.5 2.9 6.3E-05 32.3 3.1 26 193-227 39-64 (109)
17 KOG1197 Predicted quinone oxid 73.2 3 6.5E-05 39.4 2.8 44 177-229 53-99 (336)
18 COG1062 AdhC Zn-dependent alco 70.6 3.6 7.8E-05 39.9 2.8 48 162-224 25-85 (366)
19 PF08240 ADH_N: Alcohol dehydr 68.4 3.6 7.9E-05 31.7 2.0 26 94-128 39-64 (109)
20 COG1062 AdhC Zn-dependent alco 61.7 6 0.00013 38.5 2.4 141 63-229 25-196 (366)
21 COG1329 Transcriptional regula 59.1 6.8 0.00015 34.2 2.1 52 114-166 3-66 (166)
22 TIGR02227 sigpep_I_bact signal 57.5 50 0.0011 27.8 7.1 60 64-139 36-95 (163)
23 COG1064 AdhP Zn-dependent alco 57.0 20 0.00044 34.5 5.1 24 93-125 64-87 (339)
24 KOG0022 Alcohol dehydrogenase, 56.5 31 0.00066 33.6 6.1 141 62-228 29-202 (375)
25 KOG0025 Zn2+-binding dehydroge 54.6 26 0.00056 33.8 5.2 30 192-230 84-114 (354)
26 COG0604 Qor NADPH:quinone redu 54.6 16 0.00035 34.3 3.9 72 162-248 25-108 (326)
27 TIGR03366 HpnZ_proposed putati 53.0 18 0.00039 32.2 3.9 30 193-226 6-36 (280)
28 COG4384 Mu-like prophage prote 52.9 29 0.00062 31.2 5.0 31 112-143 92-129 (203)
29 KOG0022 Alcohol dehydrogenase, 52.1 25 0.00053 34.2 4.7 22 193-223 69-90 (375)
30 KOG0025 Zn2+-binding dehydroge 51.8 20 0.00043 34.6 4.0 72 62-143 45-129 (354)
31 TIGR01202 bchC 2-desacetyl-2-h 47.0 18 0.0004 32.8 3.0 23 94-126 66-88 (308)
32 COG4384 Mu-like prophage prote 46.6 58 0.0013 29.3 5.9 32 191-228 77-108 (203)
33 COG1465 Predicted alternative 46.0 55 0.0012 31.6 6.0 75 156-230 203-295 (376)
34 PF02559 CarD_CdnL_TRCF: CarD- 44.6 30 0.00065 26.5 3.4 14 116-130 2-15 (98)
35 TIGR03366 HpnZ_proposed putati 44.0 19 0.00042 32.1 2.6 30 94-127 6-36 (280)
36 PF06890 Phage_Mu_Gp45: Bacter 43.8 83 0.0018 27.2 6.4 40 82-129 48-87 (162)
37 TIGR02819 fdhA_non_GSH formald 42.6 25 0.00055 33.5 3.3 24 193-225 69-92 (393)
38 COG0604 Qor NADPH:quinone redu 41.1 24 0.00052 33.1 2.9 95 63-172 25-151 (326)
39 cd08230 glucose_DH Glucose deh 40.1 27 0.00059 32.1 3.1 23 193-225 65-87 (355)
40 PF10844 DUF2577: Protein of u 39.1 33 0.00071 27.0 2.9 23 215-244 76-98 (100)
41 PF06890 Phage_Mu_Gp45: Bacter 37.8 1.6E+02 0.0035 25.4 7.2 43 181-232 48-90 (162)
42 TIGR02822 adh_fam_2 zinc-bindi 37.6 63 0.0014 29.6 5.0 24 193-225 64-87 (329)
43 COG1064 AdhP Zn-dependent alco 37.5 30 0.00065 33.4 2.9 23 193-224 65-87 (339)
44 TIGR01202 bchC 2-desacetyl-2-h 37.4 35 0.00076 30.9 3.3 23 193-225 66-88 (308)
45 TIGR03214 ura-cupin putative a 36.9 37 0.00079 31.0 3.3 49 194-245 202-253 (260)
46 PF00235 Profilin: Profilin; 36.8 1E+02 0.0023 24.1 5.6 46 131-204 59-104 (121)
47 TIGR02819 fdhA_non_GSH formald 36.4 29 0.00063 33.1 2.7 24 94-126 69-92 (393)
48 PF01079 Hint: Hint module; I 35.1 3.4E+02 0.0073 24.4 9.8 23 112-136 27-50 (217)
49 cd08230 glucose_DH Glucose deh 34.6 29 0.00064 31.9 2.3 23 94-126 65-87 (355)
50 cd08237 ribitol-5-phosphate_DH 33.7 84 0.0018 28.9 5.2 23 193-226 66-88 (341)
51 PF10794 DUF2606: Protein of u 33.6 2.8E+02 0.0061 23.4 7.6 68 163-233 40-112 (131)
52 PLN02586 probable cinnamyl alc 32.7 44 0.00096 31.1 3.2 23 193-224 74-96 (360)
53 cd08281 liver_ADH_like1 Zinc-d 31.2 49 0.0011 30.7 3.2 23 193-224 69-91 (371)
54 cd08237 ribitol-5-phosphate_DH 31.2 77 0.0017 29.1 4.5 22 94-126 66-87 (341)
55 PRK10309 galactitol-1-phosphat 30.6 50 0.0011 30.1 3.1 25 192-225 60-84 (347)
56 PRK10861 signal peptidase I; P 30.5 1.8E+02 0.004 27.8 7.0 67 64-138 98-170 (324)
57 cd08238 sorbose_phosphate_red 29.2 57 0.0012 31.0 3.3 25 193-225 70-94 (410)
58 PLN02178 cinnamyl-alcohol dehy 28.8 56 0.0012 30.9 3.2 23 193-224 68-90 (375)
59 cd08293 PTGR2 Prostaglandin re 27.8 62 0.0013 29.2 3.2 24 193-225 76-99 (345)
60 PLN02827 Alcohol dehydrogenase 27.1 59 0.0013 30.6 3.0 24 193-225 71-94 (378)
61 cd08301 alcohol_DH_plants Plan 26.9 58 0.0013 30.1 2.9 24 193-225 64-87 (369)
62 PF09871 DUF2098: Uncharacteri 26.6 1.2E+02 0.0025 24.0 4.1 35 215-249 2-40 (91)
63 PLN02586 probable cinnamyl alc 26.4 52 0.0011 30.7 2.5 23 94-125 74-96 (360)
64 cd08269 Zn_ADH9 Alcohol dehydr 26.2 1.4E+02 0.0031 26.1 5.1 26 193-227 59-84 (312)
65 PRK09859 multidrug efflux syst 26.0 5.7E+02 0.012 24.2 9.8 71 160-233 283-370 (385)
66 PF08140 Cuticle_1: Crustacean 25.9 86 0.0019 21.3 2.8 26 80-105 2-29 (40)
67 cd08254 hydroxyacyl_CoA_DH 6-h 25.6 1.5E+02 0.0033 26.2 5.3 23 193-224 64-86 (338)
68 cd08239 THR_DH_like L-threonin 25.6 72 0.0016 28.8 3.2 25 193-226 62-86 (339)
69 cd05279 Zn_ADH1 Liver alcohol 25.1 1.2E+02 0.0026 28.1 4.6 45 96-149 63-150 (365)
70 smart00696 DM9 Repeats found i 25.0 1.7E+02 0.0038 21.6 4.7 50 85-136 12-63 (71)
71 PRK10579 hypothetical protein; 25.0 2E+02 0.0043 23.0 5.2 61 79-148 25-86 (94)
72 PLN02740 Alcohol dehydrogenase 24.8 70 0.0015 29.9 3.1 24 193-225 73-96 (381)
73 cd08281 liver_ADH_like1 Zinc-d 24.8 57 0.0012 30.3 2.4 23 94-125 69-91 (371)
74 TIGR03451 mycoS_dep_FDH mycoth 24.8 73 0.0016 29.3 3.2 23 193-224 62-84 (358)
75 TIGR02818 adh_III_F_hyde S-(hy 24.8 74 0.0016 29.6 3.2 24 193-225 63-86 (368)
76 cd00148 PROF Profilin binds ac 24.4 2.6E+02 0.0057 22.6 6.0 43 133-203 62-104 (127)
77 cd08300 alcohol_DH_class_III c 24.3 75 0.0016 29.5 3.2 24 193-225 64-87 (368)
78 PLN02514 cinnamyl-alcohol dehy 23.8 78 0.0017 29.3 3.2 23 193-224 71-93 (357)
79 TIGR02822 adh_fam_2 zinc-bindi 23.6 65 0.0014 29.6 2.6 23 94-125 64-86 (329)
80 COG1726 NqrA Na+-transporting 23.5 1.3E+02 0.0028 29.9 4.6 93 122-232 18-110 (447)
81 COG2140 Thermophilic glucose-6 23.2 1.2E+02 0.0026 27.6 4.0 31 207-238 121-151 (209)
82 PRK10309 galactitol-1-phosphat 23.1 64 0.0014 29.4 2.4 25 93-126 60-84 (347)
83 PRK10083 putative oxidoreducta 23.1 94 0.002 27.9 3.5 24 193-225 61-84 (339)
84 PRK02268 hypothetical protein; 22.9 49 0.0011 28.1 1.5 17 208-224 27-44 (141)
85 cd08269 Zn_ADH9 Alcohol dehydr 22.8 1.2E+02 0.0026 26.5 4.0 27 94-129 59-85 (312)
86 cd08233 butanediol_DH_like (2R 22.7 87 0.0019 28.5 3.2 23 193-224 72-94 (351)
87 TIGR02817 adh_fam_1 zinc-bindi 22.6 92 0.002 27.8 3.3 24 193-225 66-89 (336)
88 PLN02178 cinnamyl-alcohol dehy 22.6 67 0.0015 30.3 2.5 23 94-125 68-90 (375)
89 cd08301 alcohol_DH_plants Plan 22.3 65 0.0014 29.7 2.3 24 94-126 64-87 (369)
90 cd08277 liver_alcohol_DH_like 22.2 84 0.0018 29.1 3.0 24 193-225 63-86 (365)
91 COG3450 Predicted enzyme of th 22.0 1.9E+02 0.0041 23.8 4.7 38 105-143 75-114 (116)
92 TIGR02227 sigpep_I_bact signal 22.0 4.5E+02 0.0097 21.9 7.2 48 153-200 26-77 (163)
93 cd08293 PTGR2 Prostaglandin re 21.5 71 0.0015 28.8 2.3 24 94-126 76-99 (345)
94 PF00278 Orn_DAP_Arg_deC: Pyri 21.4 2.5E+02 0.0054 21.4 5.1 35 196-230 59-97 (116)
95 PRK04190 glucose-6-phosphate i 21.4 1.7E+02 0.0037 25.8 4.6 27 207-233 115-141 (191)
96 TIGR00692 tdh L-threonine 3-de 21.2 98 0.0021 28.0 3.2 25 192-225 62-86 (340)
97 PLN02827 Alcohol dehydrogenase 21.0 70 0.0015 30.1 2.3 24 94-126 71-94 (378)
98 cd08264 Zn_ADH_like2 Alcohol d 20.9 99 0.0022 27.5 3.2 24 193-225 62-85 (325)
99 KOG0024 Sorbitol dehydrogenase 20.8 46 0.001 32.4 1.0 25 193-226 69-93 (354)
100 cd08260 Zn_ADH6 Alcohol dehydr 20.7 1.3E+02 0.0027 27.3 3.8 24 192-224 61-84 (345)
101 cd08300 alcohol_DH_class_III c 20.1 82 0.0018 29.2 2.5 24 94-126 64-87 (368)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=234.85 Aligned_cols=95 Identities=46% Similarity=0.844 Sum_probs=92.4
Q ss_pred ceeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEEecCC
Q 025388 158 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 237 (253)
Q Consensus 158 ~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg 237 (253)
++|+||+|||||++.|+|++|+|||+||++|+|||+.|+|+|||+|..+++|++.|++||+||+|+|++|+|++++. ||
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~-dg 79 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKI-DG 79 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEE-CC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999995 99
Q ss_pred eEEEEEeCCceEEEeC
Q 025388 238 TNYIALRASEVMAVLS 253 (253)
Q Consensus 238 ~~y~vlr~~DIlAvi~ 253 (253)
++|++++++||||+++
T Consensus 80 eeylil~e~DILAiv~ 95 (96)
T COG0234 80 EEYLILSESDILAIVE 95 (96)
T ss_pred EEEEEechHHeeEEec
Confidence 9999999999999985
No 2
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=231.16 Aligned_cols=94 Identities=54% Similarity=0.862 Sum_probs=90.3
Q ss_pred eeceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCC-eeeeeeeeCCcEEEeccCCceEEEEcC
Q 025388 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKVPGTQVIYSKYAGTELEFNG 137 (253)
Q Consensus 59 ~~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~-~~p~~Vkv~GD~Vl~~ky~G~ev~~~g 137 (253)
|+|+||+|||||++.++|++|+|||+||++|++||+.|+|+|||+|..++++ .+|++||+ ||+|+|++|+|+++++||
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~Vkv-GD~Vlf~ky~G~evk~dg 79 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKV-GDRVLFGKYAGTEVKIDG 79 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEecccccc-CCEEEECccCCcEEEECC
Confidence 5799999999999999999999999999999999999999999999988775 58999999 999999999999999999
Q ss_pred eeeeEEeecceeeeec
Q 025388 138 ANHLILREDDVVGILE 153 (253)
Q Consensus 138 ~~~~llre~DIlaii~ 153 (253)
++|++|+++||||+++
T Consensus 80 eeylil~e~DILAiv~ 95 (96)
T COG0234 80 EEYLILSESDILAIVE 95 (96)
T ss_pred EEEEEechHHeeEEec
Confidence 9999999999999986
No 3
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=8.2e-34 Score=222.99 Aligned_cols=94 Identities=48% Similarity=0.873 Sum_probs=91.8
Q ss_pred eeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEEecCCe
Q 025388 159 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 238 (253)
Q Consensus 159 ~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg~ 238 (253)
+|+||+|||||++.+++++|+|||+||+++++|+++|+|+|||||+++++|++.|++||+||+|+|++|+|++|++ ||+
T Consensus 2 ~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~~~ 80 (95)
T PRK00364 2 NLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKI-DGE 80 (95)
T ss_pred cceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEE-CCE
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred EEEEEeCCceEEEeC
Q 025388 239 NYIALRASEVMAVLS 253 (253)
Q Consensus 239 ~y~vlr~~DIlAvi~ 253 (253)
+|+++|++||||+++
T Consensus 81 ~y~iv~~~DIlavi~ 95 (95)
T PRK00364 81 EYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEHHHEEEEeC
Confidence 999999999999986
No 4
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=223.70 Aligned_cols=96 Identities=27% Similarity=0.490 Sum_probs=90.1
Q ss_pred eccCccceeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeE
Q 025388 152 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 231 (253)
Q Consensus 152 i~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~e 231 (253)
+.+.++++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|..+ .|++||+||+|+|++|+|++
T Consensus 4 ~~~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gte 78 (100)
T PTZ00414 4 FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSS 78 (100)
T ss_pred ccccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcE
Confidence 4567788999999999999999999999999999999999999999999999754 38899999999999999999
Q ss_pred EEecCCeEEEEEeCCceEEEeC
Q 025388 232 FKGSDGTNYIALRASEVMAVLS 253 (253)
Q Consensus 232 v~~~dg~~y~vlr~~DIlAvi~ 253 (253)
|++ ||++|+++|++||||+++
T Consensus 79 vk~-dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 79 VKV-EGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred EEE-CCEEEEEEEhHHEEEEec
Confidence 996 999999999999999986
No 5
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=224.20 Aligned_cols=94 Identities=31% Similarity=0.616 Sum_probs=88.5
Q ss_pred cccceeceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCCceEEE
Q 025388 55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYAGTELE 134 (253)
Q Consensus 55 ~~~~~~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~G~ev~ 134 (253)
++++++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|+.+ .|++||+ ||+|+|++|+|++|+
T Consensus 6 ~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~----~~~~Vk~-GD~Vl~~~y~Gtevk 80 (100)
T PTZ00414 6 VPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD----WTPTVKV-GDTVLLPEFGGSSVK 80 (100)
T ss_pred ccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc----ccceecC-CCEEEEcCCCCcEEE
Confidence 34678899999999999999999999999999999999999999999999743 4889999 999999999999999
Q ss_pred EcCeeeeEEeecceeeeec
Q 025388 135 FNGANHLILREDDVVGILE 153 (253)
Q Consensus 135 ~~g~~~~llre~DIlaii~ 153 (253)
++|++|++++|+||||+++
T Consensus 81 ~dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 81 VEGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred ECCEEEEEEEhHHEEEEec
Confidence 9999999999999999986
No 6
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=8.3e-33 Score=217.28 Aligned_cols=94 Identities=54% Similarity=0.914 Sum_probs=89.4
Q ss_pred eeceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCC-eeeeeeeeCCcEEEeccCCceEEEEcC
Q 025388 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKVPGTQVIYSKYAGTELEFNG 137 (253)
Q Consensus 59 ~~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~-~~p~~Vkv~GD~Vl~~ky~G~ev~~~g 137 (253)
++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||||+.++++ .+|++||+ ||+|+|++|+|++|+++|
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~-GD~Vlf~~~~g~ev~~~~ 79 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKV-GDKVLFGKYAGTEVKIDG 79 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCC-CCEEEEcCCCCeEEEECC
Confidence 4699999999999999999999999999999999999999999999987765 47999999 999999999999999999
Q ss_pred eeeeEEeecceeeeec
Q 025388 138 ANHLILREDDVVGILE 153 (253)
Q Consensus 138 ~~~~llre~DIlaii~ 153 (253)
++|++++++||||+++
T Consensus 80 ~~y~iv~~~DIlavi~ 95 (95)
T PRK00364 80 EEYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEEHHHEEEEeC
Confidence 9999999999999985
No 7
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.98 E-value=1.4e-32 Score=215.16 Aligned_cols=93 Identities=51% Similarity=0.913 Sum_probs=90.5
Q ss_pred eeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEEecCCe
Q 025388 159 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 238 (253)
Q Consensus 159 ~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg~ 238 (253)
+|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||||+++++|++.|++|++||+|+|++|+|++|++ ||+
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~ 79 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKL-DGE 79 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEE-CCE
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred EEEEEeCCceEEEe
Q 025388 239 NYIALRASEVMAVL 252 (253)
Q Consensus 239 ~y~vlr~~DIlAvi 252 (253)
+|+++|++||||++
T Consensus 80 ~y~i~~~~DIla~i 93 (93)
T cd00320 80 EYLILRESDILAVI 93 (93)
T ss_pred EEEEEEHHHEEEEC
Confidence 99999999999986
No 8
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.97 E-value=2.4e-32 Score=213.53 Aligned_cols=90 Identities=43% Similarity=0.754 Sum_probs=85.5
Q ss_pred eeceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCCceEEEEcCe
Q 025388 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYAGTELEFNGA 138 (253)
Q Consensus 59 ~~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~G~ev~~~g~ 138 (253)
++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||+|.. ..|++||+ ||+|+|++|+|++|+++|+
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~----~~~~~Vk~-GD~Vl~~~y~g~ev~~~~~ 75 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD----EEDFDIKV-GDKVIFSKYAGTEIKIDDE 75 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc----cccccccC-CCEEEEccCCCeEEEECCE
Confidence 479999999999999999999999999999999999999999999852 45899999 9999999999999999999
Q ss_pred eeeEEeecceeeeec
Q 025388 139 NHLILREDDVVGILE 153 (253)
Q Consensus 139 ~~~llre~DIlaii~ 153 (253)
+|++++++||||+++
T Consensus 76 ~y~iv~e~DILa~i~ 90 (91)
T PRK14533 76 DYIIIDVNDILAKIE 90 (91)
T ss_pred EEEEEEhHhEEEEee
Confidence 999999999999986
No 9
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.97 E-value=5.6e-32 Score=211.43 Aligned_cols=89 Identities=35% Similarity=0.634 Sum_probs=84.5
Q ss_pred eeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEEecCCe
Q 025388 159 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 238 (253)
Q Consensus 159 ~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg~ 238 (253)
+|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||||.. ..|++||+||+|+|++|+|++|++ ||+
T Consensus 2 ~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~-~~~ 75 (91)
T PRK14533 2 KVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKI-DDE 75 (91)
T ss_pred CceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEE-CCE
Confidence 69999999999999999999999999999999999999999999862 558999999999999999999997 899
Q ss_pred EEEEEeCCceEEEeC
Q 025388 239 NYIALRASEVMAVLS 253 (253)
Q Consensus 239 ~y~vlr~~DIlAvi~ 253 (253)
+|+++|++||||+++
T Consensus 76 ~y~iv~e~DILa~i~ 90 (91)
T PRK14533 76 DYIIIDVNDILAKIE 90 (91)
T ss_pred EEEEEEhHhEEEEee
Confidence 999999999999985
No 10
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.97 E-value=1.4e-31 Score=209.50 Aligned_cols=92 Identities=54% Similarity=0.916 Sum_probs=87.9
Q ss_pred eceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCCe-eeeeeeeCCcEEEeccCCceEEEEcCe
Q 025388 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKVPGTQVIYSKYAGTELEFNGA 138 (253)
Q Consensus 60 ~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-~p~~Vkv~GD~Vl~~ky~G~ev~~~g~ 138 (253)
+|+||+|||||++.++|++|+|||+||++++++++.|+|+|||||+.++++. +|++||+ ||+|+|++|+|++|+++|+
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~-GD~Vl~~~~~g~~v~~~~~ 79 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKV-GDKVLFPKYAGTEVKLDGE 79 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccC-CCEEEECCCCceEEEECCE
Confidence 4899999999999999999999999999999999999999999999877764 7999999 9999999999999999999
Q ss_pred eeeEEeecceeeee
Q 025388 139 NHLILREDDVVGIL 152 (253)
Q Consensus 139 ~~~llre~DIlaii 152 (253)
+|+|++++||||++
T Consensus 80 ~y~i~~~~DIla~i 93 (93)
T cd00320 80 EYLILRESDILAVI 93 (93)
T ss_pred EEEEEEHHHEEEEC
Confidence 99999999999985
No 11
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.97 E-value=1.2e-30 Score=203.67 Aligned_cols=93 Identities=46% Similarity=0.876 Sum_probs=87.4
Q ss_pred eeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEEecCCe
Q 025388 159 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 238 (253)
Q Consensus 159 ~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg~ 238 (253)
+|+||+|||||++.+++++|+|||+||+++++++++|+|||||+|+++++|+..|+.|++||+|+|++|+|+++++ ||+
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~ 79 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKF-DGE 79 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEE-TTE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEE-CCE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999997 899
Q ss_pred EEEEEeCCceEEEe
Q 025388 239 NYIALRASEVMAVL 252 (253)
Q Consensus 239 ~y~vlr~~DIlAvi 252 (253)
+|+++|++||||++
T Consensus 80 ~~~~~~~~dIlavi 93 (93)
T PF00166_consen 80 KYLIVREDDILAVI 93 (93)
T ss_dssp EEEEEEGGGEEEEE
T ss_pred EEEEEEHHHeEEEC
Confidence 99999999999986
No 12
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-31 Score=206.99 Aligned_cols=102 Identities=38% Similarity=0.586 Sum_probs=96.6
Q ss_pred eeccCccceeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCe
Q 025388 151 ILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGN 230 (253)
Q Consensus 151 ii~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ 230 (253)
+...+.++++.|+.|||||++.+++++|+|||+||+++++|.++|+|+|||||.++++|+.+|..|++||+|||++|+|+
T Consensus 2 ~~~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt 81 (104)
T KOG1641|consen 2 ISTSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGT 81 (104)
T ss_pred cchhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEEeCCceEEEe
Q 025388 231 DFKGSDGTNYIALRASEVMAVL 252 (253)
Q Consensus 231 ev~~~dg~~y~vlr~~DIlAvi 252 (253)
+|++.|+++|+++|.+|+|+.+
T Consensus 82 ~V~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 82 KVKLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred EEeccCCceeEEecchhhhhhh
Confidence 9998767899999999999876
No 13
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.96 E-value=1.2e-29 Score=198.02 Aligned_cols=92 Identities=52% Similarity=0.894 Sum_probs=84.8
Q ss_pred eceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCCe-eeeeeeeCCcEEEeccCCceEEEEcCe
Q 025388 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKVPGTQVIYSKYAGTELEFNGA 138 (253)
Q Consensus 60 ~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-~p~~Vkv~GD~Vl~~ky~G~ev~~~g~ 138 (253)
+|+||+|||||++.+++++|+|||+||++++++++.|+|||||+|+.+.++. +|++|++ ||+|+|++|+|+++++||+
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~-GD~Vl~~~~~g~~v~~~~~ 79 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKV-GDKVLFPKYAGTEVKFDGE 79 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-T-TSEEEEETTTSEEEEETTE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeee-ccEEeccccCceEEEECCE
Confidence 5899999999999999999999999999999999999999999999987664 7999999 9999999999999999999
Q ss_pred eeeEEeecceeeee
Q 025388 139 NHLILREDDVVGIL 152 (253)
Q Consensus 139 ~~~llre~DIlaii 152 (253)
+|++++++||||++
T Consensus 80 ~~~~~~~~dIlavi 93 (93)
T PF00166_consen 80 KYLIVREDDILAVI 93 (93)
T ss_dssp EEEEEEGGGEEEEE
T ss_pred EEEEEEHHHeEEEC
Confidence 99999999999986
No 14
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-28 Score=192.84 Aligned_cols=97 Identities=34% Similarity=0.526 Sum_probs=89.6
Q ss_pred cccceeceecCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCCe-eeeeeeeCCcEEEeccCCceEE
Q 025388 55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKVPGTQVIYSKYAGTEL 133 (253)
Q Consensus 55 ~~~~~~lkPL~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-~p~~Vkv~GD~Vl~~ky~G~ev 133 (253)
.+.++++.|+.|||||++.+++++|+|||+||+++++|.++|+|+|||||.++..++ +|++|++ ||+|+|++|+|++|
T Consensus 5 ~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~-Gd~VLlpeygGt~V 83 (104)
T KOG1641|consen 5 SWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKV-GDRVLLPEYGGTKV 83 (104)
T ss_pred hhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccC-CCEEEeeccCCcEE
Confidence 456789999999999999999999999999999999999999999999999987655 7999999 99999999999999
Q ss_pred EEcC-eeeeEEeecceeeee
Q 025388 134 EFNG-ANHLILREDDVVGIL 152 (253)
Q Consensus 134 ~~~g-~~~~llre~DIlaii 152 (253)
++++ ++|++++++|+|+++
T Consensus 84 ~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 84 KLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred eccCCceeEEecchhhhhhh
Confidence 9984 689999999988765
No 15
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=79.81 E-value=1.6 Score=41.17 Aligned_cols=45 Identities=36% Similarity=0.493 Sum_probs=30.7
Q ss_pred ccccceeEE-ecCCCC--CCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEecc-CC
Q 025388 76 EEKTDGGIF-LPSAAQ--TKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSK-YA 129 (253)
Q Consensus 76 e~kT~gGI~-LP~sa~--~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~k-y~ 129 (253)
+..-+-|+| +|+-.- -+.-.|+|+|||.|.. +-|+ ||+|.|-. |+
T Consensus 51 d~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt--------drkv-GDrVayl~~~g 99 (336)
T KOG1197|consen 51 DLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT--------DRKV-GDRVAYLNPFG 99 (336)
T ss_pred HHHHhccccCCCCCCcCCCcccceEEEEecCCcc--------cccc-ccEEEEeccch
Confidence 344567888 333211 2346899999999985 4689 99999965 44
No 16
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=76.49 E-value=2.9 Score=32.27 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=20.4
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEecCC
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKY 227 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ky 227 (253)
..|+|+++|++.. .+++||+|...-+
T Consensus 39 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~~ 64 (109)
T PF08240_consen 39 GVGVVVAVGPGVT---------DFKVGDRVVVSPN 64 (109)
T ss_dssp EEEEEEEESTTTT---------SSGTT-EEEEESE
T ss_pred eeeeeeeeccccc---------cccccceeeeecc
Confidence 5899999999763 3899999998543
No 17
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=73.24 E-value=3 Score=39.45 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=29.9
Q ss_pred cccceEE-eeccc--cCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCC
Q 025388 177 TTAGGLL-LTEAS--KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 229 (253)
Q Consensus 177 kT~gGIi-Lp~sa--~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG 229 (253)
--.-||| +++-. --+.-.|+|+|||.|.. +.++||+|.|-.-.|
T Consensus 53 y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt---------drkvGDrVayl~~~g 99 (336)
T KOG1197|consen 53 YFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT---------DRKVGDRVAYLNPFG 99 (336)
T ss_pred HHhccccCCCCCCcCCCcccceEEEEecCCcc---------ccccccEEEEeccch
Confidence 3456888 33221 12346899999999975 469999999965333
No 18
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.63 E-value=3.6 Score=39.93 Aligned_cols=48 Identities=35% Similarity=0.636 Sum_probs=32.4
Q ss_pred ecCCeEEEEEecccccccceEEeecccc------C-CC------ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 162 PLNDRVFIKVAEAEETTAGGLLLTEASK------E-KP------SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 162 PL~DRVLVk~~e~e~kT~gGIiLp~sa~------e-k~------~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
|=-|-||||..- .|+-=+|..- + -| --|.|.+||+|.. +||+||+|+.
T Consensus 25 P~~gEVlVri~A------tGVCHTD~~~~~G~~p~~~P~vLGHEgAGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 25 PRAGEVLVRITA------TGVCHTDAHTLSGDDPEGFPAVLGHEGAGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred CCCCeEEEEEEE------eeccccchhhhcCCCCCCCceecccccccEEEEecCCcc---------ccCCCCEEEE
Confidence 777889998753 3433322110 0 11 3799999999984 6999999975
No 19
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=68.41 E-value=3.6 Score=31.69 Aligned_cols=26 Identities=50% Similarity=0.652 Sum_probs=20.1
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEeccC
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKY 128 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky 128 (253)
..|+|+++|++.. .+++ ||+|+..-+
T Consensus 39 ~~G~V~~vG~~v~--------~~~~-Gd~V~~~~~ 64 (109)
T PF08240_consen 39 GVGVVVAVGPGVT--------DFKV-GDRVVVSPN 64 (109)
T ss_dssp EEEEEEEESTTTT--------SSGT-T-EEEEESE
T ss_pred eeeeeeeeccccc--------cccc-cceeeeecc
Confidence 4799999999863 4789 999998543
No 20
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=61.74 E-value=6 Score=38.46 Aligned_cols=141 Identities=28% Similarity=0.336 Sum_probs=81.2
Q ss_pred ecCCeEEEEeccc-----ccccceeEEecCCCC---CCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccC--C---
Q 025388 63 PLGDRVLVKIKTV-----EEKTDGGIFLPSAAQ---TKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKY--A--- 129 (253)
Q Consensus 63 PL~DRVLVk~~e~-----e~kT~gGI~LP~sa~---~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky--~--- 129 (253)
|--|-||||.... +.-+.+|.+ |+.-- -..-.|.|.+||+|.. +||+ ||+|+..=- =
T Consensus 25 P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gVt--------~vkp-GDhVI~~f~p~CG~C 94 (366)
T COG1062 25 PRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGVT--------SVKP-GDHVILLFTPECGQC 94 (366)
T ss_pred CCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCcc--------ccCC-CCEEEEcccCCCCCC
Confidence 7789999997532 233333332 32210 0124799999999985 7999 999985321 0
Q ss_pred ---------------ceE---EEEcCeeeeEEeecceeeeeccCccceeeecCCeEEEEEecccccccceEEeeccccCC
Q 025388 130 ---------------GTE---LEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEK 191 (253)
Q Consensus 130 ---------------G~e---v~~~g~~~~llre~DIlaii~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek 191 (253)
.+. ...||..-+.....++...+-+..+....-++++-++|..+...-...+++
T Consensus 95 ~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~ll-------- 166 (366)
T COG1062 95 KFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLL-------- 166 (366)
T ss_pred chhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEE--------
Confidence 111 223564444477777887777666666667778888887765543333332
Q ss_pred CceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCC
Q 025388 192 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 229 (253)
Q Consensus 192 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG 229 (253)
|==|-.|-|...+ ...|++||+|-..--.|
T Consensus 167 ---GCgV~TG~Gav~n-----ta~v~~G~tvaV~GlGg 196 (366)
T COG1062 167 ---GCGVTTGIGAVVN-----TAKVEPGDTVAVFGLGG 196 (366)
T ss_pred ---eeeeccChHHhhh-----cccCCCCCeEEEEeccH
Confidence 2222233333222 22477777776654443
No 21
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=59.09 E-value=6.8 Score=34.24 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=32.8
Q ss_pred eeeeeCCcEEEeccCCceEE------EEcC--eeeeEE--eecceeeeeccCcc--ceeeecCCe
Q 025388 114 ISVKVPGTQVIYSKYAGTEL------EFNG--ANHLIL--REDDVVGILETDEI--KDLKPLNDR 166 (253)
Q Consensus 114 ~~Vkv~GD~Vl~~ky~G~ev------~~~g--~~~~ll--re~DIlaii~t~~~--~~ikPL~DR 166 (253)
+..|+ ||+|+|+-++--.| +++| .+|+++ .++|....+-++.+ -.|+|+-|+
T Consensus 3 ~~Fk~-Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~~GiR~v~~~ 66 (166)
T COG1329 3 MAFKI-GDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADSVGLRPVVDQ 66 (166)
T ss_pred ccccC-CCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEeeccchhhcCChhhhhh
Confidence 45678 99999999993222 2444 456664 46677777665543 256666654
No 22
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=57.52 E-value=50 Score=27.75 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=32.8
Q ss_pred cCCeEEEEecccccccceeEEecCCCCCCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCCceEEEEcCee
Q 025388 64 LGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYAGTELEFNGAN 139 (253)
Q Consensus 64 L~DRVLVk~~e~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~G~ev~~~g~~ 139 (253)
-+|+||+.+..-. ...++.|.||+.-.....+...+.--+..|||+|.+.. .++-+||+.
T Consensus 36 ~Gd~vlv~k~~~~-------------~~~~~rGDiVvf~~~~~~~~~~iKRVig~pGd~v~i~~---~~l~vNg~~ 95 (163)
T TIGR02227 36 EGDRILVNKFAYG-------------TSDPKRGDIVVFKDPDDNKNIYVKRVIGLPGDKVEFRD---GKLYINGKK 95 (163)
T ss_pred CCCEEEEEEeEcC-------------CCCCCCCcEEEEecCCCCCceeEEEEEecCCCEEEEEC---CEEEECCEE
Confidence 4999999875321 12455666666653211111112222334799998865 246667754
No 23
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=56.97 E-value=20 Score=34.50 Aligned_cols=24 Identities=50% Similarity=0.649 Sum_probs=20.5
Q ss_pred CcceeEEEEcCceecCCCeeeeeeeeCCcEEEe
Q 025388 93 PQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIY 125 (253)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~ 125 (253)
-..|+|++||++.. .+|+ ||+|-.
T Consensus 64 EivG~V~~vG~~V~--------~~k~-GDrVgV 87 (339)
T COG1064 64 EIVGTVVEVGEGVT--------GLKV-GDRVGV 87 (339)
T ss_pred ceEEEEEEecCCCc--------cCCC-CCEEEe
Confidence 35899999999974 5899 999988
No 24
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.52 E-value=31 Score=33.62 Aligned_cols=141 Identities=22% Similarity=0.309 Sum_probs=80.7
Q ss_pred eecCCeEEEEecc-----cccccceeEEecCCCCC----CCcceeEEEEcCceecCCCeeeeeeeeCCcEEE--------
Q 025388 62 KPLGDRVLVKIKT-----VEEKTDGGIFLPSAAQT----KPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVI-------- 124 (253)
Q Consensus 62 kPL~DRVLVk~~e-----~e~kT~gGI~LP~sa~~----k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl-------- 124 (253)
.|-...|.||..- -+..+-+|-. |+.+-. ..-.|.|.+||+|.. .+|. ||+|+
T Consensus 29 pPka~EVRIKI~~t~vCHTD~~~~~g~~-~~~~fP~IlGHEaaGIVESvGegV~--------~vk~-GD~Viplf~p~Cg 98 (375)
T KOG0022|consen 29 PPKAHEVRIKILATGVCHTDAYVWSGKD-PEGLFPVILGHEAAGIVESVGEGVT--------TVKP-GDHVIPLFTPQCG 98 (375)
T ss_pred CCCCceEEEEEEEEeeccccceeecCCC-ccccCceEecccceeEEEEecCCcc--------ccCC-CCEEeeccccCCC
Confidence 3677777777653 1223333332 333211 124799999999974 6888 99998
Q ss_pred ---------------eccCCceEE-EEcCeeeeEEeecceeeeeccCccceeeecCCeEEEEEecccccccceEEeeccc
Q 025388 125 ---------------YSKYAGTEL-EFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEAS 188 (253)
Q Consensus 125 ---------------~~ky~G~ev-~~~g~~~~llre~DIlaii~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa 188 (253)
|..+.+... -+||+.-+..+.++|+--+-++-+....-+.|--|+|..+..--.+..
T Consensus 99 eCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvc------- 171 (375)
T KOG0022|consen 99 ECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVC------- 171 (375)
T ss_pred CcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhhee-------
Confidence 222223333 347766666888888888877767666667777777765432111111
Q ss_pred cCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCC
Q 025388 189 KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYA 228 (253)
Q Consensus 189 ~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kya 228 (253)
..|==+..|=|..+.. -.|++|++|-...-+
T Consensus 172 ----LLgCGvsTG~GAa~~~-----Akv~~GstvAVfGLG 202 (375)
T KOG0022|consen 172 ----LLGCGVSTGYGAAWNT-----AKVEPGSTVAVFGLG 202 (375)
T ss_pred ----Eeeccccccchhhhhh-----cccCCCCEEEEEecc
Confidence 2333344555554332 247777777665444
No 25
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=54.59 E-value=26 Score=33.80 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=22.7
Q ss_pred CceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCC-Ce
Q 025388 192 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYA-GN 230 (253)
Q Consensus 192 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kya-G~ 230 (253)
--.|+||+||.+.. .+|+||+|+-..-. |+
T Consensus 84 EGv~eVv~vGs~vk---------gfk~Gd~VIp~~a~lGt 114 (354)
T KOG0025|consen 84 EGVGEVVAVGSNVK---------GFKPGDWVIPLSANLGT 114 (354)
T ss_pred cceEEEEEecCCcC---------ccCCCCeEeecCCCCcc
Confidence 36899999998542 38999999876533 54
No 26
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=54.55 E-value=16 Score=34.26 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=43.7
Q ss_pred ecCCeEEEEEecc-----cccccceEEeeccc----cCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecC-C--CC
Q 025388 162 PLNDRVFIKVAEA-----EETTAGGLLLTEAS----KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK-Y--AG 229 (253)
Q Consensus 162 PL~DRVLVk~~e~-----e~kT~gGIiLp~sa----~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k-y--aG 229 (253)
|-.+.|||++.-. +-....|-.-|... --.-..|+|++||+|.. ..++||+|.+.. . .|
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~---------~~~~GdrV~~~~~~~~~G 95 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVT---------GFKVGDRVAALGGVGRDG 95 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCC---------CcCCCCEEEEccCCCCCC
Confidence 7779999998753 22333333111110 11236899999999874 249999999984 2 22
Q ss_pred eEEEecCCeEEEEEeCCce
Q 025388 230 NDFKGSDGTNYIALRASEV 248 (253)
Q Consensus 230 ~ev~~~dg~~y~vlr~~DI 248 (253)
---||..+.++.+
T Consensus 96 ------~~AEy~~v~a~~~ 108 (326)
T COG0604 96 ------GYAEYVVVPADWL 108 (326)
T ss_pred ------cceeEEEecHHHc
Confidence 1246777666544
No 27
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=53.00 E-value=18 Score=32.22 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=21.5
Q ss_pred ceeEEEEecCCccC-CCCCeeeecCCCCCEEEecC
Q 025388 193 SIGMVIAVGPGPLD-EEGNRKPLSIAPGNTVMYSK 226 (253)
Q Consensus 193 ~~G~VVAVGpG~~~-~~G~~~p~~Vk~GD~Vlf~k 226 (253)
..|+|+++|++... .+|. .+++||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~~~~----~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGV----PLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccCC----CCCCCCEEEEcC
Confidence 57999999998641 1221 489999998743
No 28
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=52.94 E-value=29 Score=31.16 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=21.7
Q ss_pred eeeeeeeCCcEEEeccCC-------ceEEEEcCeeeeEE
Q 025388 112 LDISVKVPGTQVIYSKYA-------GTELEFNGANHLIL 143 (253)
Q Consensus 112 ~p~~Vkv~GD~Vl~~ky~-------G~ev~~~g~~~~ll 143 (253)
.|+-++. ||+|+|..++ |-.|+.+-+.|.+.
T Consensus 92 R~~GL~a-GeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~ 129 (203)
T COG4384 92 RITGLKA-GETVIYNHEGAKIVLTEGGIIEADCKTLTVN 129 (203)
T ss_pred ccccccC-CceEEEeccCcEEEEccCcEEEEeccEEEEe
Confidence 5678899 9999999887 34455555555543
No 29
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.06 E-value=25 Score=34.24 Aligned_cols=22 Identities=36% Similarity=0.764 Sum_probs=19.2
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEE
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVM 223 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vl 223 (253)
-.|.|.+||+|.. .|++||+|+
T Consensus 69 aaGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 69 AAGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred ceeEEEEecCCcc---------ccCCCCEEe
Confidence 4799999999873 699999998
No 30
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=51.76 E-value=20 Score=34.56 Aligned_cols=72 Identities=32% Similarity=0.372 Sum_probs=40.4
Q ss_pred eecCCeEEEEeccccc-----ccceeEEe--cCC-C-CCCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCC-ce
Q 025388 62 KPLGDRVLVKIKTVEE-----KTDGGIFL--PSA-A-QTKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYA-GT 131 (253)
Q Consensus 62 kPL~DRVLVk~~e~e~-----kT~gGI~L--P~s-a-~~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~-G~ 131 (253)
.|..| ||||-..+.- .+--|.|= |+- | ---...|+||+||.+.. ..|. ||+|+-..-+ |+
T Consensus 45 ~~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vk--------gfk~-Gd~VIp~~a~lGt 114 (354)
T KOG0025|consen 45 VPGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVK--------GFKP-GDWVIPLSANLGT 114 (354)
T ss_pred CCCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcC--------ccCC-CCeEeecCCCCcc
Confidence 36667 8888765431 22244441 111 1 11235789999998652 3777 9999976644 54
Q ss_pred E---EEEcCeeeeEE
Q 025388 132 E---LEFNGANHLIL 143 (253)
Q Consensus 132 e---v~~~g~~~~ll 143 (253)
. ..+++.+++-+
T Consensus 115 W~t~~v~~e~~Li~v 129 (354)
T KOG0025|consen 115 WRTEAVFSESDLIKV 129 (354)
T ss_pred ceeeEeecccceEEc
Confidence 3 33444444333
No 31
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=47.03 E-value=18 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=18.8
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++. ..++ ||+|+..
T Consensus 66 ~~G~V~~vG~~v---------~~~v-GdrV~~~ 88 (308)
T TIGR01202 66 SVGRVVEAGPDT---------GFRP-GDRVFVP 88 (308)
T ss_pred eEEEEEEecCCC---------CCCC-CCEEEEe
Confidence 489999999874 2688 9999963
No 32
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=46.62 E-value=58 Score=29.25 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCC
Q 025388 191 KPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYA 228 (253)
Q Consensus 191 k~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kya 228 (253)
+.+.|.+|.+= +|..+|+-+++||+|+|.-+.
T Consensus 77 ~rShgviv~~~------~~syR~~GL~aGeT~iY~~eG 108 (203)
T COG4384 77 KRSHGVIVVSQ------HGSYRITGLKAGETVIYNHEG 108 (203)
T ss_pred ccceeEEEEec------CCccccccccCCceEEEeccC
Confidence 34566666654 455678889999999999876
No 33
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=46.03 E-value=55 Score=31.57 Aligned_cols=75 Identities=24% Similarity=0.521 Sum_probs=43.3
Q ss_pred ccceeeecC--CeEEEEEecc----c----ccccceEEeeccc-cCCCc-eeEEEEecCCccC-----CCCCeeee-cCC
Q 025388 156 EIKDLKPLN--DRVFIKVAEA----E----ETTAGGLLLTEAS-KEKPS-IGMVIAVGPGPLD-----EEGNRKPL-SIA 217 (253)
Q Consensus 156 ~~~~ikPL~--DRVLVk~~e~----e----~kT~gGIiLp~sa-~ek~~-~G~VVAVGpG~~~-----~~G~~~p~-~Vk 217 (253)
.++.+.||+ |||-|-...- | -.+++|++|--+- .+.|. -..=--|..|..+ .+|+.+-+ .++
T Consensus 203 ~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~ 282 (376)
T COG1465 203 TVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELK 282 (376)
T ss_pred EEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhc
Confidence 467899986 9998876542 1 2466888885432 12221 1111112222211 23333333 699
Q ss_pred CCCEEEecCCCCe
Q 025388 218 PGNTVMYSKYAGN 230 (253)
Q Consensus 218 ~GD~Vlf~kyaG~ 230 (253)
.||.|+.-+|.|.
T Consensus 283 aGDeV~iVD~dGr 295 (376)
T COG1465 283 AGDEVLIVDFDGR 295 (376)
T ss_pred CCCeEEEEecCCc
Confidence 9999999999985
No 34
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=44.60 E-value=30 Score=26.51 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=10.8
Q ss_pred eeeCCcEEEeccCCc
Q 025388 116 VKVPGTQVIYSKYAG 130 (253)
Q Consensus 116 Vkv~GD~Vl~~ky~G 130 (253)
.++ ||.|+|+.++-
T Consensus 2 f~~-GD~VVh~~~Gv 15 (98)
T PF02559_consen 2 FKI-GDYVVHPNHGV 15 (98)
T ss_dssp --T-TSEEEETTTEE
T ss_pred CCC-CCEEEECCCce
Confidence 356 99999999993
No 35
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=44.00 E-value=19 Score=32.06 Aligned_cols=30 Identities=33% Similarity=0.579 Sum_probs=20.5
Q ss_pred cceeEEEEcCceecC-CCeeeeeeeeCCcEEEecc
Q 025388 94 QAGEVVAVGEGKTVG-KAKLDISVKVPGTQVIYSK 127 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~-~~~~p~~Vkv~GD~Vl~~k 127 (253)
..|+|+++|++.... .+ -.+++ ||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~~~---~~~~~-GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDG---VPLRL-GQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccC---CCCCC-CCEEEEcC
Confidence 479999999986311 00 03788 99998643
No 36
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=43.83 E-value=83 Score=27.24 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=26.4
Q ss_pred eEEecCCCCCCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCC
Q 025388 82 GIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYA 129 (253)
Q Consensus 82 GI~LP~sa~~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~ 129 (253)
+|+||-.- +...|.|+|+..+++- +-.++. |+.++|..++
T Consensus 48 ~vvl~lGG--~rs~~Vvia~~d~~yR-----~~~L~~-GEvalY~~~G 87 (162)
T PF06890_consen 48 AVVLFLGG--DRSHGVVIAVEDRRYR-----PKGLKP-GEVALYDDEG 87 (162)
T ss_pred EEEEEecc--CCcceEEEEeCCcccc-----ccCCCC-CcEEEEcCCC
Confidence 45555432 3467888888876642 224677 9999999765
No 37
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=42.63 E-value=25 Score=33.51 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.2
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|.+.
T Consensus 69 ~~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred eEEEEEEEcCccc---------cccCCCEEEEe
Confidence 5899999999763 48999999774
No 38
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=41.08 E-value=24 Score=33.09 Aligned_cols=95 Identities=32% Similarity=0.391 Sum_probs=54.0
Q ss_pred ecCCeEEEEeccc-----ccccceeEEecCCCC----CCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEecc-C--Cc
Q 025388 63 PLGDRVLVKIKTV-----EEKTDGGIFLPSAAQ----TKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSK-Y--AG 130 (253)
Q Consensus 63 PL~DRVLVk~~e~-----e~kT~gGI~LP~sa~----~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~k-y--~G 130 (253)
|-.+.|||+..-. +-....|-.-|.... -.-..|+|+|||++.. ..++ ||+|++.. . .|
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~--------~~~~-GdrV~~~~~~~~~G 95 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVT--------GFKV-GDRVAALGGVGRDG 95 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCC--------CcCC-CCEEEEccCCCCCC
Confidence 6668888887543 233334431111111 1235899999999874 2377 99999984 2 23
Q ss_pred eEEEEcCeeeeEEeecceeee-----------e-----c----cCccceeeecCCeEEEEEe
Q 025388 131 TELEFNGANHLILREDDVVGI-----------L-----E----TDEIKDLKPLNDRVFIKVA 172 (253)
Q Consensus 131 ~ev~~~g~~~~llre~DIlai-----------i-----~----t~~~~~ikPL~DRVLVk~~ 172 (253)
. -.+|..+.++.++-+ + + ......++| +++|||-=.
T Consensus 96 ~-----~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~-g~~VLV~ga 151 (326)
T COG0604 96 G-----YAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKP-GETVLVHGA 151 (326)
T ss_pred c-----ceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEecC
Confidence 1 145666666444322 0 0 001234777 999998763
No 39
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=40.12 E-value=27 Score=32.07 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=18.9
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++ . .+++||+|+..
T Consensus 65 ~~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred cceEEEEecCC-C---------CCCCCCEEEec
Confidence 58999999986 2 37999999864
No 40
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=39.07 E-value=33 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=17.8
Q ss_pred cCCCCCEEEecCCCCeEEEecCCeEEEEEe
Q 025388 215 SIAPGNTVMYSKYAGNDFKGSDGTNYIALR 244 (253)
Q Consensus 215 ~Vk~GD~Vlf~kyaG~ev~~~dg~~y~vlr 244 (253)
.+|+||+|+.-. . .+|+.|+++.
T Consensus 76 ~Lk~GD~V~ll~-----~--~~gQ~yiVlD 98 (100)
T PF10844_consen 76 GLKVGDKVLLLR-----V--QGGQKYIVLD 98 (100)
T ss_pred CCcCCCEEEEEE-----e--cCCCEEEEEE
Confidence 589999999866 2 3678888764
No 41
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=37.79 E-value=1.6e+02 Score=25.43 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=29.0
Q ss_pred eEEeeccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEE
Q 025388 181 GLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDF 232 (253)
Q Consensus 181 GIiLp~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev 232 (253)
+|+|+-.- +.+.|.|+++..++ .+|..+++|+.++|.++. +.|
T Consensus 48 ~vvl~lGG--~rs~~Vvia~~d~~------yR~~~L~~GEvalY~~~G-~~I 90 (162)
T PF06890_consen 48 AVVLFLGG--DRSHGVVIAVEDRR------YRPKGLKPGEVALYDDEG-QKI 90 (162)
T ss_pred EEEEEecc--CCcceEEEEeCCcc------ccccCCCCCcEEEEcCCC-CEE
Confidence 45555432 35778888887644 455669999999999754 444
No 42
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=37.57 E-value=63 Score=29.63 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=19.6
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|++.
T Consensus 64 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 87 (329)
T TIGR02822 64 VVGEVAGRGADAG---------GFAVGDRVGIA 87 (329)
T ss_pred eEEEEEEECCCCc---------ccCCCCEEEEc
Confidence 5899999999752 47999999853
No 43
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=37.46 E-value=30 Score=33.36 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|++||++.. .+|+||+|-.
T Consensus 65 ivG~V~~vG~~V~---------~~k~GDrVgV 87 (339)
T COG1064 65 IVGTVVEVGEGVT---------GLKVGDRVGV 87 (339)
T ss_pred eEEEEEEecCCCc---------cCCCCCEEEe
Confidence 6899999999874 4899999988
No 44
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=37.40 E-value=35 Score=30.94 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=19.0
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++. .+++||+|...
T Consensus 66 ~~G~V~~vG~~v----------~~~vGdrV~~~ 88 (308)
T TIGR01202 66 SVGRVVEAGPDT----------GFRPGDRVFVP 88 (308)
T ss_pred eEEEEEEecCCC----------CCCCCCEEEEe
Confidence 589999999863 26999999863
No 45
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=36.93 E-value=37 Score=31.04 Aligned_cols=49 Identities=16% Similarity=0.386 Sum_probs=37.8
Q ss_pred eeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEEecCCe---EEEEEeC
Q 025388 194 IGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT---NYIALRA 245 (253)
Q Consensus 194 ~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg~---~y~vlr~ 245 (253)
.+.-|==|.|.+..||+ ..+|++||.+.++.|.=+.+. +.|+ +|+++++
T Consensus 202 h~~yiL~G~G~~~~~g~--~~~V~~GD~i~i~~~~~h~~~-~~G~~~~~~l~ykd 253 (260)
T TIGR03214 202 HGLYVLEGKGVYNLDNN--WVPVEAGDYIWMGAYCPQACY-AGGRGEFRYLLYKD 253 (260)
T ss_pred eEEEEEeceEEEEECCE--EEEecCCCEEEECCCCCEEEE-ecCCCcEEEEEEcc
Confidence 56677778888888876 457999999999999999887 4442 6666654
No 46
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=36.81 E-value=1e+02 Score=24.13 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=32.0
Q ss_pred eEEEEcCeeeeEEeecceeeeeccCccceeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCCc
Q 025388 131 TELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGP 204 (253)
Q Consensus 131 ~ev~~~g~~~~llre~DIlaii~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG~ 204 (253)
.-|.++|++|+++|.+ |+.+.-+ +..+|+++-.+ .+..||++....
T Consensus 59 ~gi~l~G~kY~~~~~d------------------~~~i~~k-----~~~~G~~i~kt-----~~~ivIg~y~~~ 104 (121)
T PF00235_consen 59 NGITLGGKKYIVLRAD------------------DNSIYGK-----KGKGGIIIVKT-----KQAIVIGMYDES 104 (121)
T ss_dssp H-EEETTEEEEEEEEE------------------TTEEEEE-----ETTEEEEEEEC-----SSEEEEEEEETT
T ss_pred CCeEEcCcEeEEEecC------------------CceEEee-----CCCCcEEEEEC-----CCEEEEEEeCCC
Confidence 4589999999999966 4444422 45788887743 567888887653
No 47
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=36.40 E-value=29 Score=33.10 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.0
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++.. .+++ ||+|...
T Consensus 69 ~~G~V~~vG~~V~--------~~~v-GdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDVE--------FIKI-GDIVSVP 92 (393)
T ss_pred eEEEEEEEcCccc--------cccC-CCEEEEe
Confidence 5899999999863 4788 9999774
No 48
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=35.06 E-value=3.4e+02 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=12.0
Q ss_pred eee-eeeeCCcEEEeccCCceEEEEc
Q 025388 112 LDI-SVKVPGTQVIYSKYAGTELEFN 136 (253)
Q Consensus 112 ~p~-~Vkv~GD~Vl~~ky~G~ev~~~ 136 (253)
++| ++++ ||+|+--+-.| ++.|-
T Consensus 27 k~m~~L~i-GD~Vla~d~~G-~~~yS 50 (217)
T PF01079_consen 27 KRMSDLKI-GDRVLAVDSDG-KLVYS 50 (217)
T ss_dssp EEGGG--T-T-EEEEE-TTS--EEEE
T ss_pred eEHHHCCC-CCEEEEecCCC-cEEEE
Confidence 444 7899 99999877555 34444
No 49
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=34.56 E-value=29 Score=31.88 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=18.8
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++ . .+++ ||+|+..
T Consensus 65 ~~G~V~~vG~~-~--------~~~v-GdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-S--------GLSP-GDLVVPT 87 (355)
T ss_pred cceEEEEecCC-C--------CCCC-CCEEEec
Confidence 47999999987 3 3788 9999864
No 50
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=33.67 E-value=84 Score=28.90 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=18.3
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 226 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 226 (253)
..|+|+++|.+ .+++||+|.+..
T Consensus 66 ~~G~V~~~g~~-----------~~~vGdrV~~~~ 88 (341)
T cd08237 66 GIGVVVSDPTG-----------TYKVGTKVVMVP 88 (341)
T ss_pred eEEEEEeeCCC-----------ccCCCCEEEECC
Confidence 68999998753 379999998753
No 51
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=33.63 E-value=2.8e+02 Score=23.35 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=47.4
Q ss_pred cCCeEEEEEecccccccceEEee-----ccccCCCceeEEEEecCCccCCCCCeeeecCCCCCEEEecCCCCeEEE
Q 025388 163 LNDRVFIKVAEAEETTAGGLLLT-----EASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 233 (253)
Q Consensus 163 L~DRVLVk~~e~e~kT~gGIiLp-----~sa~ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev~ 233 (253)
..+-|-.-+.+++.+..-|.-+. ++. ..|+.-..+.+| +.+++|+.++..++.|+-.+|.+..+..+.
T Consensus 40 ~~~pVT~hVen~e~~pi~~~ev~lmKa~ds~-~qPs~eig~~IG--KTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~ 112 (131)
T PF10794_consen 40 VVNPVTFHVENAEGQPIKDFEVTLMKAADSD-PQPSKEIGISIG--KTDEEGKIIWKNGRKGKYIVFLPNGETQET 112 (131)
T ss_pred ecccEEEEEecCCCCcccceEEEEEeccccC-CCCchhhceeec--ccCCCCcEEEecCCcceEEEEEcCCCceeE
Confidence 34445566666666666664332 332 346766666666 567899999999999999999888886554
No 52
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=32.67 E-value=44 Score=31.12 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.0
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|.+
T Consensus 74 ~~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 74 IVGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred eeEEEEEECCCCC---------ccCCCCEEEE
Confidence 5799999998752 3799999974
No 53
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=31.24 E-value=49 Score=30.74 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=19.1
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|+.
T Consensus 69 ~~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred ceeEEEEeCCCCC---------cCCCCCEEEE
Confidence 5799999998752 3799999986
No 54
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=31.23 E-value=77 Score=29.15 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=17.6
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|.+ .+++ ||+|.+.
T Consensus 66 ~~G~V~~~g~~----------~~~v-GdrV~~~ 87 (341)
T cd08237 66 GIGVVVSDPTG----------TYKV-GTKVVMV 87 (341)
T ss_pred eEEEEEeeCCC----------ccCC-CCEEEEC
Confidence 57999998864 3688 9999875
No 55
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=30.62 E-value=50 Score=30.12 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=19.9
Q ss_pred CceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 192 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 192 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 36899999998752 47999999864
No 56
>PRK10861 signal peptidase I; Provisional
Probab=30.54 E-value=1.8e+02 Score=27.85 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=37.7
Q ss_pred cCCeEEEEecccccccceeEEecCCC-----CCCCcceeEEEEcCceecCCC-eeeeeeeeCCcEEEeccCCceEEEEcC
Q 025388 64 LGDRVLVKIKTVEEKTDGGIFLPSAA-----QTKPQAGEVVAVGEGKTVGKA-KLDISVKVPGTQVIYSKYAGTELEFNG 137 (253)
Q Consensus 64 L~DRVLVk~~e~e~kT~gGI~LP~sa-----~~k~~~G~VVAVG~G~~~~~~-~~p~~Vkv~GD~Vl~~ky~G~ev~~~g 137 (253)
-||+|||.+.. -|+-+|=+. -..|+.|.||-.-... +++. -+.=-|-.|||+|.|....| .+-+||
T Consensus 98 ~GD~IlVnK~~------yg~~~p~~~~~~~~~~~p~RGDIVVF~~P~-~~~~~yIKRVIGlPGD~I~~~~~~~-~l~iNg 169 (324)
T PRK10861 98 IGDFILVEKFA------YGIKDPITQTTLIETGHPKRGDIVVFKYPE-DPKLDYIKRVVGLPGDKVTYDPVSK-EVTIQP 169 (324)
T ss_pred CCCEEEEEEee------cCccCccccccccccCCCCCCCEEEEecCC-CCCCcEEEEeeecCCcEEEEEeCCC-EEEEcC
Confidence 59999998853 222222111 1357889888874321 1111 12223445899999875444 366676
Q ss_pred e
Q 025388 138 A 138 (253)
Q Consensus 138 ~ 138 (253)
+
T Consensus 170 ~ 170 (324)
T PRK10861 170 G 170 (324)
T ss_pred c
Confidence 5
No 57
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=29.19 E-value=57 Score=31.00 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.7
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++... .+++||+|...
T Consensus 70 ~~G~V~~vG~~v~~--------~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQG--------KYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCccC--------CCCCCCEEEEc
Confidence 57999999987521 27999999875
No 58
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=28.79 E-value=56 Score=30.85 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.0
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|..
T Consensus 68 ~aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 68 IVGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eeEEEEEECCCCC---------ccCCCCEEEE
Confidence 5799999998752 4799999985
No 59
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=27.79 E-value=62 Score=29.19 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=19.5
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|.+.
T Consensus 76 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 99 (345)
T cd08293 76 GGGVGVVEESKHQ---------KFAVGDIVTSF 99 (345)
T ss_pred eeEEEEEeccCCC---------CCCCCCEEEec
Confidence 6799999998652 37999999863
No 60
>PLN02827 Alcohol dehydrogenase-like
Probab=27.12 E-value=59 Score=30.57 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.9
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 71 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVT---------EFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCc---------ccCCCCEEEEe
Confidence 5799999998762 47999999875
No 61
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=26.90 E-value=58 Score=30.07 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=19.5
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCC---------ccccCCEEEEc
Confidence 5799999998752 47999999863
No 62
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=26.59 E-value=1.2e+02 Score=24.01 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=27.3
Q ss_pred cCCCCCEEEecCCC--C--eEEEecCCeEEEEEeCCceE
Q 025388 215 SIAPGNTVMYSKYA--G--NDFKGSDGTNYIALRASEVM 249 (253)
Q Consensus 215 ~Vk~GD~Vlf~kya--G--~ev~~~dg~~y~vlr~~DIl 249 (253)
++++|+.|.|..-+ | .+++..||..|.+|...|++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 57899999998765 4 36777788999999777764
No 63
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=26.37 E-value=52 Score=30.66 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=18.9
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEe
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIY 125 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~ 125 (253)
..|+|+++|++.. .+++ ||+|+.
T Consensus 74 ~~G~V~~vG~~v~--------~~~v-GdrV~~ 96 (360)
T PLN02586 74 IVGIVTKLGKNVK--------KFKE-GDRVGV 96 (360)
T ss_pred eeEEEEEECCCCC--------ccCC-CCEEEE
Confidence 5799999999753 4788 999974
No 64
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=26.22 E-value=1.4e+02 Score=26.09 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=20.3
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEecCC
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKY 227 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ky 227 (253)
..|.|+++|++.. ..++||+|+...+
T Consensus 59 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~~ 84 (312)
T cd08269 59 GWGRVVALGPGVR---------GLAVGDRVAGLSG 84 (312)
T ss_pred eEEEEEEECCCCc---------CCCCCCEEEEecC
Confidence 5799999998642 3689999997543
No 65
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=26.03 E-value=5.7e+02 Score=24.19 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=35.4
Q ss_pred eeecCCeEEEEEecccccccceEEeeccccCCC--ceeEEEE-----------ecCCccCCCCCeeeecCCCCCEEEecC
Q 025388 160 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKP--SIGMVIA-----------VGPGPLDEEGNRKPLSIAPGNTVMYSK 226 (253)
Q Consensus 160 ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~--~~G~VVA-----------VGpG~~~~~G~~~p~~Vk~GD~Vlf~k 226 (253)
|+| |-.+=++....+ ...++++|.++--.. ....|.- |-.|..+.+.-.+--.+++||+|+...
T Consensus 283 l~p-Gm~v~v~i~~~~--~~~~l~VP~~Av~~~~~g~~~v~vv~~~~~~~~~~V~~g~~~~~~~~V~~GL~~Gd~VV~~g 359 (385)
T PRK09859 283 LLP-GMYVTALVDEGS--RQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSG 359 (385)
T ss_pred ECC-CCEEEEEEeccc--cCCeEEECHHHheecCCCCEEEEEECCCCEEEEEEEEEeeEcCCEEEEeCCCCCCCEEEEcC
Confidence 444 555555553322 235788887652111 1111222 222333233222334699999999887
Q ss_pred C----CCeEEE
Q 025388 227 Y----AGNDFK 233 (253)
Q Consensus 227 y----aG~ev~ 233 (253)
. .|..++
T Consensus 360 ~~~l~~G~~V~ 370 (385)
T PRK09859 360 LQRIRPGIKAR 370 (385)
T ss_pred hhcCCCcCEee
Confidence 3 355555
No 66
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=25.89 E-value=86 Score=21.33 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=17.5
Q ss_pred ceeEEecCCCCCC--CcceeEEEEcCce
Q 025388 80 DGGIFLPSAAQTK--PQAGEVVAVGEGK 105 (253)
Q Consensus 80 ~gGI~LP~sa~~k--~~~G~VVAVG~G~ 105 (253)
.+||+.|+...-. +-...|+.+||--
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpSG 29 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPSG 29 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCce
Confidence 4799999975432 2233789999854
No 67
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=25.60 E-value=1.5e+02 Score=26.25 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.5
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|+.
T Consensus 64 ~~G~v~~~G~~v~---------~~~~Gd~V~~ 86 (338)
T cd08254 64 IAGTVVEVGAGVT---------NFKVGDRVAV 86 (338)
T ss_pred ccEEEEEECCCCc---------cCCCCCEEEE
Confidence 5799999998542 3689999986
No 68
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=25.56 E-value=72 Score=28.82 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=20.0
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 226 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 226 (253)
..|+|+++|++.. .+++||+|+...
T Consensus 62 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 86 (339)
T cd08239 62 PAGVVVAVGPGVT---------HFRVGDRVMVYH 86 (339)
T ss_pred ceEEEEEECCCCc---------cCCCCCEEEECC
Confidence 5799999998652 479999998643
No 69
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=25.07 E-value=1.2e+02 Score=28.09 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=0.0
Q ss_pred eeEEEEcCceecCCCeeeeeeeeCCcEEEeccC-------------------------------CceEEEEcC-------
Q 025388 96 GEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKY-------------------------------AGTELEFNG------- 137 (253)
Q Consensus 96 G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky-------------------------------~G~ev~~~g------- 137 (253)
|+|++||++.. .+++ ||+|+.... ++..+..+|
T Consensus 63 G~V~~vG~~v~--------~~~~-Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd05279 63 GIVESIGPGVT--------TLKP-GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFL 133 (365)
T ss_pred EEEEEeCCCcc--------cCCC-CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCcccccc
Q ss_pred -----eeeeEEeeccee
Q 025388 138 -----ANHLILREDDVV 149 (253)
Q Consensus 138 -----~~~~llre~DIl 149 (253)
.+|+.+.++.+.
T Consensus 134 ~~g~~a~~~~v~~~~~~ 150 (365)
T cd05279 134 GTSTFAEYTVVSEISLA 150 (365)
T ss_pred ccccccceEEecCCceE
No 70
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=25.04 E-value=1.7e+02 Score=21.61 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=37.4
Q ss_pred ecCCCCC--CCcceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCCceEEEEc
Q 025388 85 LPSAAQT--KPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYAGTELEFN 136 (253)
Q Consensus 85 LP~sa~~--k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~G~ev~~~ 136 (253)
+|..|-. ....|+.+-||-+.. ++..+|-.|.. .....|-.|+|.|+.++
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~-~g~~~pGKv~p-~~~~~yi~~~g~E~~~~ 63 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYY-EGSLLPGKVVP-SHGCAYIPYGGQEVRLD 63 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEE-CCcEEEEEEEc-cCCEEEEEECCEEEEcC
Confidence 4776643 345788999997764 44457777777 89999999999999874
No 71
>PRK10579 hypothetical protein; Provisional
Probab=25.01 E-value=2e+02 Score=22.98 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=35.1
Q ss_pred cceeEEecCCCCCCCcceeEEEEcCceecCCCeeeeeeeeCCcEEEecc-CCceEEEEcCeeeeEEeecce
Q 025388 79 TDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSK-YAGTELEFNGANHLILREDDV 148 (253)
Q Consensus 79 T~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~k-y~G~ev~~~g~~~~llre~DI 148 (253)
..=||++|....=.....++..|=.|. +.|+.||+.= |.. -+|..+++.+..-+-++-++.
T Consensus 25 kTlGVm~pGey~F~T~~~E~MeivsG~--------l~V~Lpg~~e-w~~~~aG~sF~VpanssF~l~v~~~ 86 (94)
T PRK10579 25 ASVGVMAEGEYTFSTAEPEEMTVISGA--------LNVLLPGATD-WQVYEAGEVFNVPGHSEFHLQVAEP 86 (94)
T ss_pred eEEEEEeeeEEEEcCCCcEEEEEEeeE--------EEEECCCCcc-cEEeCCCCEEEECCCCeEEEEECcc
Confidence 347888887654344555666665564 6788877542 122 246777775544444444443
No 72
>PLN02740 Alcohol dehydrogenase-like
Probab=24.84 E-value=70 Score=29.94 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=19.5
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 73 ~~G~V~~vG~~v~---------~~~vGdrV~~~ 96 (381)
T PLN02740 73 AAGIVESVGEGVE---------DLKAGDHVIPI 96 (381)
T ss_pred ceEEEEEeCCCCC---------cCCCCCEEEec
Confidence 5799999998652 47999999864
No 73
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=24.77 E-value=57 Score=30.31 Aligned_cols=23 Identities=52% Similarity=0.810 Sum_probs=18.9
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEe
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIY 125 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~ 125 (253)
..|+|+++|++.. .+++ ||+|+.
T Consensus 69 ~~G~V~~vG~~v~--------~~~~-GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGVT--------DLEV-GDHVVL 91 (371)
T ss_pred ceeEEEEeCCCCC--------cCCC-CCEEEE
Confidence 5799999998753 4688 999986
No 74
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=24.77 E-value=73 Score=29.34 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=19.1
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|..
T Consensus 62 ~~G~V~~vG~~v~---------~~~~GdrV~~ 84 (358)
T TIGR03451 62 AAGVVEAVGEGVT---------DVAPGDYVVL 84 (358)
T ss_pred eEEEEEEeCCCCc---------ccCCCCEEEE
Confidence 5899999998652 3799999986
No 75
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=24.76 E-value=74 Score=29.64 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.7
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|...
T Consensus 63 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (368)
T TIGR02818 63 GAGIVEAVGEGVT---------SVKVGDHVIPL 86 (368)
T ss_pred cEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 5799999998752 47999999864
No 76
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=24.41 E-value=2.6e+02 Score=22.56 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=29.7
Q ss_pred EEEcCeeeeEEeecceeeeeccCccceeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEecCC
Q 025388 133 LEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPG 203 (253)
Q Consensus 133 v~~~g~~~~llre~DIlaii~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVGpG 203 (253)
|.++|++|+++|.+| +.+.-+ +-.+|+++-. ..+..||+..+.
T Consensus 62 i~l~G~KY~~l~~d~------------------~~i~~k-----k~~~Gi~i~k-----T~~~ivi~~y~e 104 (127)
T cd00148 62 LTLGGQKYMVIRADD------------------RSIYGK-----KGAGGVVIVK-----TKQALVIGMYEE 104 (127)
T ss_pred EEECCeEEEEEecCc------------------cEEEee-----eCCCeEEEEE-----CCCEEEEEEcCC
Confidence 889999999999887 222111 2237887763 367888888864
No 77
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=24.33 E-value=75 Score=29.45 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=19.6
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~---------~~~vGdrV~~~ 87 (368)
T cd08300 64 GAGIVESVGEGVT---------SVKPGDHVIPL 87 (368)
T ss_pred eeEEEEEeCCCCc---------cCCCCCEEEEc
Confidence 5799999998752 47999999864
No 78
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=23.84 E-value=78 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.0
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|++
T Consensus 71 ~~G~Vv~vG~~v~---------~~~~Gd~V~~ 93 (357)
T PLN02514 71 VVGEVVEVGSDVS---------KFTVGDIVGV 93 (357)
T ss_pred eeEEEEEECCCcc---------cccCCCEEEE
Confidence 5799999998752 4799999985
No 79
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=23.59 E-value=65 Score=29.56 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.1
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEe
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIY 125 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~ 125 (253)
..|+|+++|++.. .+++ ||+|+.
T Consensus 64 ~~G~V~~vG~~v~--------~~~~-Gd~V~~ 86 (329)
T TIGR02822 64 VVGEVAGRGADAG--------GFAV-GDRVGI 86 (329)
T ss_pred eEEEEEEECCCCc--------ccCC-CCEEEE
Confidence 5899999999863 4788 999985
No 80
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=23.51 E-value=1.3e+02 Score=29.90 Aligned_cols=93 Identities=25% Similarity=0.340 Sum_probs=60.8
Q ss_pred EEEeccCCceEEEEcCeeeeEEeecceeeeeccCccceeeecCCeEEEEEecccccccceEEeeccccCCCceeEEEEec
Q 025388 122 QVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVG 201 (253)
Q Consensus 122 ~Vl~~ky~G~ev~~~g~~~~llre~DIlaii~t~~~~~ikPL~DRVLVk~~e~e~kT~gGIiLp~sa~ek~~~G~VVAVG 201 (253)
+++|.+-+=++|-++|++|.=||-. +.+=+.|.+++=+|| .|+|.-.|++++. |..|+|.|+-
T Consensus 18 q~i~~~~~i~~Vallg~ey~gmrp~--mkV~~gD~VkkGq~L----------fEdKknpgv~~Ta-----p~sG~V~aI~ 80 (447)
T COG1726 18 QVIYDGPAITEVALLGEEYVGMRPS--MKVREGDAVKKGQVL----------FEDKKNPGVVFTA-----PVSGKVTAIH 80 (447)
T ss_pred hhccCCCCccEEEEccccccCCCCc--ceeccCCeeecccee----------eecccCCCeEEec-----cCCceEEEee
Confidence 3467777778888899999877654 222233444444444 3566677887773 6789999998
Q ss_pred CCccCCCCCeeeecCCCCCEEEecCCCCeEE
Q 025388 202 PGPLDEEGNRKPLSIAPGNTVMYSKYAGNDF 232 (253)
Q Consensus 202 pG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev 232 (253)
-|..-- =+-+-..++.|+.+-|.+|.-+..
T Consensus 81 RG~KRv-LqsVVI~~~g~~~~tf~~Y~~~~L 110 (447)
T COG1726 81 RGEKRV-LQSVVIKVEGDEQITFEKYDLEQL 110 (447)
T ss_pred ccccee-eeeEEEEecCCcccceeecCHHHH
Confidence 775311 112234688899999999986554
No 81
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=23.24 E-value=1.2e+02 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCCeeeecCCCCCEEEecCCCCeEEEecCCe
Q 025388 207 EEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 238 (253)
Q Consensus 207 ~~G~~~p~~Vk~GD~Vlf~kyaG~ev~~~dg~ 238 (253)
.+|+-+...+++||.++.+++.|+-+. +.|+
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~-N~Gd 151 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTI-NTGD 151 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEee-cCCC
Confidence 457777888999999999999998765 3443
No 82
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=23.14 E-value=64 Score=29.42 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred CcceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 93 PQAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
...|+|+++|++.. .+++ ||+|+..
T Consensus 60 e~~G~V~~vG~~v~--------~~~v-Gd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVD--------DLHP-GDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCC--------CCCC-CCEEEEC
Confidence 35799999998752 4788 9999863
No 83
>PRK10083 putative oxidoreductase; Provisional
Probab=23.08 E-value=94 Score=27.94 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=19.2
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 84 (339)
T PRK10083 61 FFGVIDAVGEGVD---------AARIGERVAVD 84 (339)
T ss_pred eEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 5799999998642 47999999853
No 84
>PRK02268 hypothetical protein; Provisional
Probab=22.87 E-value=49 Score=28.10 Aligned_cols=17 Identities=35% Similarity=0.913 Sum_probs=13.0
Q ss_pred CCCeeee-cCCCCCEEEe
Q 025388 208 EGNRKPL-SIAPGNTVMY 224 (253)
Q Consensus 208 ~G~~~p~-~Vk~GD~Vlf 224 (253)
.|+..|+ -+|+||.++|
T Consensus 27 hgK~apl~RmkpGD~ivy 44 (141)
T PRK02268 27 HGKAAPLRRMKPGDWIIY 44 (141)
T ss_pred CCccchhhcCCCCCEEEE
Confidence 4555666 4899999997
No 85
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=22.81 E-value=1.2e+02 Score=26.54 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=20.4
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEeccCC
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYSKYA 129 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ky~ 129 (253)
..|.|+++|++.. ..++ ||+|+.-.++
T Consensus 59 ~~G~V~~vG~~v~--------~~~~-Gd~V~~~~~g 85 (312)
T cd08269 59 GWGRVVALGPGVR--------GLAV-GDRVAGLSGG 85 (312)
T ss_pred eEEEEEEECCCCc--------CCCC-CCEEEEecCC
Confidence 4799999998752 3678 9999975443
No 86
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=22.68 E-value=87 Score=28.50 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.0
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
..|+|+++|++.. .+++||+|+.
T Consensus 72 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 94 (351)
T cd08233 72 FSGVVVEVGSGVT---------GFKVGDRVVV 94 (351)
T ss_pred ceEEEEEeCCCCC---------CCCCCCEEEE
Confidence 5799999998642 4799999986
No 87
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=22.61 E-value=92 Score=27.84 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=19.5
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 66 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 89 (336)
T TIGR02817 66 AAGVVVAVGDEVT---------LFKPGDEVWYA 89 (336)
T ss_pred eEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 5899999998642 47899999864
No 88
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=22.57 E-value=67 Score=30.33 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.9
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEe
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIY 125 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~ 125 (253)
..|+|+++|++.. .+++ ||+|..
T Consensus 68 ~aG~Vv~vG~~v~--------~~~v-GdrV~~ 90 (375)
T PLN02178 68 IVGIATKVGKNVT--------KFKE-GDRVGV 90 (375)
T ss_pred eeEEEEEECCCCC--------ccCC-CCEEEE
Confidence 5799999998753 4788 999974
No 89
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=22.34 E-value=65 Score=29.75 Aligned_cols=24 Identities=46% Similarity=0.602 Sum_probs=19.3
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++.. .+++ ||+|+..
T Consensus 64 ~~G~V~~vG~~v~--------~~~~-GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVT--------DLKP-GDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCC--------cccc-CCEEEEc
Confidence 4799999998753 4788 9999863
No 90
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=22.15 E-value=84 Score=29.09 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=19.4
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 63 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (365)
T cd08277 63 GAGIVESVGEGVT---------NLKPGDKVIPL 86 (365)
T ss_pred eeEEEEeeCCCCc---------cCCCCCEEEEC
Confidence 5899999998653 37899999863
No 91
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=22.01 E-value=1.9e+02 Score=23.78 Aligned_cols=38 Identities=13% Similarity=0.346 Sum_probs=24.8
Q ss_pred eecCCCeeeeeeeeCCcEEEecc-CCceEEEEcC-eeeeEE
Q 025388 105 KTVGKAKLDISVKVPGTQVIYSK-YAGTELEFNG-ANHLIL 143 (253)
Q Consensus 105 ~~~~~~~~p~~Vkv~GD~Vl~~k-y~G~ev~~~g-~~~~ll 143 (253)
....++..|..++. ||.++|+. |.|+--..+. .|++++
T Consensus 75 ~~T~d~Ge~v~~~a-GD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 75 EVTPDGGEPVEVRA-GDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred EEECCCCeEEEEcC-CCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 33445556788999 99999987 8886543333 344443
No 92
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=21.96 E-value=4.5e+02 Score=21.95 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=25.1
Q ss_pred ccCccceeeecCCeEEEEEecc--cccccceEEeeccc--cCCCceeEEEEe
Q 025388 153 ETDEIKDLKPLNDRVFIKVAEA--EETTAGGLLLTEAS--KEKPSIGMVIAV 200 (253)
Q Consensus 153 ~t~~~~~ikPL~DRVLVk~~e~--e~kT~gGIiLp~sa--~ek~~~G~VVAV 200 (253)
..+.|..-..-+|+||+.+..- .+-..|-|++=... ..+...-.|+++
T Consensus 26 ~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~ 77 (163)
T TIGR02227 26 PGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGL 77 (163)
T ss_pred CCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEec
Confidence 3444443334589999988632 23344666664332 123445556555
No 93
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=21.51 E-value=71 Score=28.83 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=19.2
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++.. .+++ ||+|+.-
T Consensus 76 ~~G~V~~vG~~v~--------~~~~-Gd~V~~~ 99 (345)
T cd08293 76 GGGVGVVEESKHQ--------KFAV-GDIVTSF 99 (345)
T ss_pred eeEEEEEeccCCC--------CCCC-CCEEEec
Confidence 5799999998752 4688 9999863
No 94
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=21.44 E-value=2.5e+02 Score=21.45 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=21.2
Q ss_pred EEEEecCCccCCC--CCeeee--cCCCCCEEEecCCCCe
Q 025388 196 MVIAVGPGPLDEE--GNRKPL--SIAPGNTVMYSKYAGN 230 (253)
Q Consensus 196 ~VVAVGpG~~~~~--G~~~p~--~Vk~GD~Vlf~kyaG~ 230 (253)
.+.=.||-+...| .+...+ .+++||.++|..-++.
T Consensus 59 ~~~i~GptC~~~D~i~~~~~lP~~l~~GD~l~f~~~GAY 97 (116)
T PF00278_consen 59 PSTIWGPTCDSGDVIARDVMLPKELEVGDWLVFENMGAY 97 (116)
T ss_dssp EEEEEESSSSTTSEEEEEEEEESTTTTT-EEEESS-SSS
T ss_pred EEEEEECCcCCCceEeeeccCCCCCCCCCEEEEecCccc
Confidence 3333777776554 333333 6999999999886553
No 95
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=21.42 E-value=1.7e+02 Score=25.84 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.7
Q ss_pred CCCCeeeecCCCCCEEEecCCCCeEEE
Q 025388 207 EEGNRKPLSIAPGNTVMYSKYAGNDFK 233 (253)
Q Consensus 207 ~~G~~~p~~Vk~GD~Vlf~kyaG~ev~ 233 (253)
.+|......+++||.|+++.+..+.+.
T Consensus 115 ~~G~~~~~~v~pGd~v~IPpg~~H~~i 141 (191)
T PRK04190 115 PEGEARWIEMEPGTVVYVPPYWAHRSV 141 (191)
T ss_pred CCCcEEEEEECCCCEEEECCCCcEEeE
Confidence 345556678899999999998887765
No 96
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=21.20 E-value=98 Score=28.02 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=19.9
Q ss_pred CceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 192 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 192 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (340)
T TIGR00692 62 EVAGEVVGIGPGVE---------GIKVGDYVSVE 86 (340)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEC
Confidence 36899999998642 47999999874
No 97
>PLN02827 Alcohol dehydrogenase-like
Probab=20.95 E-value=70 Score=30.06 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.7
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++.. .+++ ||+|+..
T Consensus 71 ~~G~V~~vG~~v~--------~~~~-GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVT--------EFEK-GDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCc--------ccCC-CCEEEEe
Confidence 5799999999863 4688 9999874
No 98
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=20.94 E-value=99 Score=27.53 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=19.5
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 225 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 225 (253)
..|+|+++|++.. .+++||+|+..
T Consensus 62 ~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (325)
T cd08264 62 FAGVVEEVGDHVK---------GVKKGDRVVVY 85 (325)
T ss_pred eeEEEEEECCCCC---------CCCCCCEEEEC
Confidence 5799999998652 47999999864
No 99
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.79 E-value=46 Score=32.35 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.2
Q ss_pred ceeEEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025388 193 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 226 (253)
Q Consensus 193 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 226 (253)
..|+|..||++.. .+|+||+|....
T Consensus 69 ssGiV~evG~~Vk---------~LkVGDrVaiEp 93 (354)
T KOG0024|consen 69 SSGIVEEVGDEVK---------HLKVGDRVAIEP 93 (354)
T ss_pred cccchhhhccccc---------ccccCCeEEecC
Confidence 6899999999874 589999998754
No 100
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=20.74 E-value=1.3e+02 Score=27.26 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.4
Q ss_pred CceeEEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025388 192 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 224 (253)
Q Consensus 192 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 224 (253)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~~G~~~~---------~~~~Gd~V~~ 84 (345)
T cd08260 61 EFAGVVVEVGEDVS---------RWRVGDRVTV 84 (345)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEE
Confidence 36799999998642 4799999986
No 101
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=20.11 E-value=82 Score=29.22 Aligned_cols=24 Identities=58% Similarity=0.638 Sum_probs=19.4
Q ss_pred cceeEEEEcCceecCCCeeeeeeeeCCcEEEec
Q 025388 94 QAGEVVAVGEGKTVGKAKLDISVKVPGTQVIYS 126 (253)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~~p~~Vkv~GD~Vl~~ 126 (253)
..|+|+++|++.. .+++ ||+|+..
T Consensus 64 ~~G~V~~vG~~v~--------~~~v-GdrV~~~ 87 (368)
T cd08300 64 GAGIVESVGEGVT--------SVKP-GDHVIPL 87 (368)
T ss_pred eeEEEEEeCCCCc--------cCCC-CCEEEEc
Confidence 5799999998753 4688 9999864
Done!