BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025389
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42738|CHMU_ARATH Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1
PE=2 SV=3
Length = 340
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 141/255 (55%), Positives = 182/255 (71%), Gaps = 8/255 (3%)
Query: 7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
LTL+ +R+SLIRQED+IIF L+ERAK+ NA YD + GF+GSL++Y+V+ +E +
Sbjct: 86 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLH 145
Query: 67 ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
A GR+++P+E PFFPD LP +PP +YP+VLH A SIN NK IW+MYF L+P V
Sbjct: 146 AKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVK 205
Query: 127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
+GDDGNY STA D CLQ LS+RIHYGKFVAE KF+ +P YE AI+A+D+DALM++LT
Sbjct: 206 KGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLT 265
Query: 187 YENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQAR--------FKVDPSVVSRLYGDWIMP 238
+ VE +KKRVE K GQEV +G + ++ +K+ P +V LYGDWIMP
Sbjct: 266 FPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMP 325
Query: 239 FTKLVQVEYLLRRLD 253
TK VQVEYLLRRLD
Sbjct: 326 LTKEVQVEYLLRRLD 340
>sp|P32178|CHMU_YEAST Chorismate mutase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ARO7 PE=1 SV=1
Length = 256
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 150/251 (59%), Gaps = 9/251 (3%)
Query: 7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
L L +RD L+R ED+IIF IER+ Y+ ++ P F GS L + + E
Sbjct: 10 LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69
Query: 65 MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
+ R+E+P+E+PFFPDK+ SF+P YPQ+L P +N N I +Y +++PL
Sbjct: 70 AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129
Query: 125 VA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
+GDD N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+ Y I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189
Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
+T VE+ + +R+ KKA V G V N+ ++ ++ P + ++Y + ++P TK
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYG--VDPTNESGER---RITPEYLVKIYKEIVIPITKE 244
Query: 243 VQVEYLLRRLD 253
V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255
>sp|O13739|CHMU_SCHPO Probable chorismate mutase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC16E8.04c PE=3 SV=1
Length = 251
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 12/257 (4%)
Query: 1 MALAGD-LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYD---QSYASFPGFSGSLLQ 56
M+L + L L+ +R +LIRQEDTIIF +ERA+ P N Y + + + GS L
Sbjct: 1 MSLVNEKLKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLN 60
Query: 57 YIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMY 116
Y++ + E + A RY +PEE PF D LP +P F LHP ++N N I + Y
Sbjct: 61 YLLHEEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYY 117
Query: 117 FNQLLPLFVAEGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRA 175
N+++P + GDD NY ST D+ CLQ+LSRRIHYGKFVAE K+ P +Y+ I A
Sbjct: 118 INEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILA 177
Query: 176 KDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDW 235
+D + N + E+ V KR+ KA+ G++ + D K + +++ V+ +Y D+
Sbjct: 178 RDIKGIENEIVDAAQEERVLKRLHYKALNYGRDAA---DPTKPSD-RINADCVASIYKDY 233
Query: 236 IMPFTKLVQVEYLLRRL 252
++P TK V+V+YLL RL
Sbjct: 234 VIPMTKKVEVDYLLARL 250
>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1
PE=1 SV=4
Length = 2555
Score = 35.0 bits (79), Expect = 0.47, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 75 PEESPFFPDKLPHSFVPPFKYPQVLHP 101
P+ESP P LP S VPP Q L P
Sbjct: 2458 PQESPALPTSLPSSLVPPVTAAQFLTP 2484
>sp|Q9DF60|MY88A_XENLA Myeloid differentiation primary response protein MyD88-A OS=Xenopus
laevis GN=myd88-a PE=2 SV=1
Length = 283
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 156 FVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDG 215
FV E+ R +Y+L + DRD L + ++++ R K +++ + +D
Sbjct: 162 FVQEMISRLEQTDYKLKLCVFDRDVLPGTCLWSITSELIENRCRKMVVIISDDYLDSSDC 221
Query: 216 DKQARF 221
D Q +F
Sbjct: 222 DFQTKF 227
>sp|Q8BGQ2|CSRN2_MOUSE Cysteine/serine-rich nuclear protein 2 OS=Mus musculus GN=Csrnp2
PE=2 SV=1
Length = 534
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 24 IFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSE--AMQATAGRYENPEESPFF 81
+ C E ++HP +P SY + SG L+ Y V+Q ++A +G E P + F
Sbjct: 383 VLCFTENSEHPAASPMSSPSYLN----SGPLVYYQVEQRPVVGVKAESGSEEGP--ASFP 436
Query: 82 PDKLPHSFVPPFKYPQVLHP-AGTSINKNKIIWDMYFNQLLP 122
+K F P P A ++ K ++ N+LLP
Sbjct: 437 KEKDLSVFSLPVTSLVACGPSASAALCKPEVGKTSSLNKLLP 478
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,720,591
Number of Sequences: 539616
Number of extensions: 3829154
Number of successful extensions: 9237
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9220
Number of HSP's gapped (non-prelim): 13
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)