Query 025389
Match_columns 253
No_of_seqs 126 out of 170
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02344 chorismate mutase 100.0 5E-133 1E-137 908.8 24.6 252 2-253 32-284 (284)
2 TIGR01802 CM_pl-yst monofuncti 100.0 6E-132 1E-136 887.3 23.6 243 7-253 1-246 (246)
3 KOG0795 Chorismate mutase [Ami 100.0 3E-126 6E-131 843.5 23.3 251 3-253 11-262 (262)
4 COG1605 PheA Chorismate mutase 98.4 5E-07 1.1E-11 71.7 5.1 79 139-250 20-98 (101)
5 PF01817 CM_2: Chorismate muta 95.4 0.027 5.9E-07 42.1 4.6 76 138-247 6-81 (81)
6 TIGR01803 CM-like chorismate m 94.6 0.073 1.6E-06 40.6 4.9 65 138-235 10-74 (82)
7 PRK08055 chorismate mutase; Pr 94.6 0.067 1.5E-06 47.2 5.3 74 142-249 29-102 (181)
8 PRK09269 chorismate mutase; Pr 94.5 0.053 1.2E-06 48.2 4.6 74 142-249 36-109 (193)
9 TIGR01799 CM_T chorismate muta 94.0 0.097 2.1E-06 40.0 4.4 65 138-235 10-74 (83)
10 smart00830 CM_2 Chorismate mut 93.9 0.077 1.7E-06 39.1 3.6 65 137-234 5-69 (79)
11 PRK06285 chorismate mutase; Pr 93.2 0.2 4.3E-06 39.4 5.2 77 138-248 18-94 (96)
12 PRK09239 chorismate mutase; Pr 93.1 0.22 4.8E-06 40.1 5.3 64 137-233 20-83 (104)
13 TIGR01791 CM_archaeal chorisma 93.0 0.2 4.2E-06 38.0 4.6 64 138-234 10-73 (83)
14 TIGR01797 CM_P_1 chorismate mu 92.6 0.2 4.4E-06 38.3 4.2 65 138-235 10-74 (83)
15 TIGR01806 CM_mono2 chorismate 92.2 0.26 5.6E-06 40.2 4.7 74 142-249 8-81 (114)
16 TIGR01795 CM_mono_cladeE monof 88.6 1.1 2.3E-05 35.5 5.1 55 138-209 14-68 (94)
17 PRK10622 pheA bifunctional cho 87.6 0.63 1.4E-05 45.1 3.9 65 138-235 16-80 (386)
18 PRK07075 isochorismate-pyruvat 85.0 2.1 4.4E-05 34.2 5.0 64 138-235 19-82 (101)
19 PRK07248 hypothetical protein; 83.1 1.6 3.5E-05 33.4 3.6 49 138-203 12-60 (87)
20 TIGR01805 CM_mono_grmpos monof 79.7 2.6 5.6E-05 31.9 3.6 64 138-235 10-73 (81)
21 TIGR01807 CM_P2 chorismate mut 78.7 5.3 0.00012 29.8 5.0 64 138-235 10-75 (76)
22 PRK11199 tyrA bifunctional cho 78.3 3.3 7.2E-05 39.5 4.7 65 138-235 14-78 (374)
23 PF12491 ApoB100_C: Apolipopro 63.4 3.5 7.7E-05 30.7 0.9 21 143-163 5-27 (58)
24 TIGR01801 CM_A chorismate muta 59.5 17 0.00037 29.1 4.3 64 138-235 15-78 (102)
25 cd03567 VHS_GGA VHS domain fam 55.8 37 0.00081 28.6 5.9 69 142-210 38-123 (139)
26 PRK06443 chorismate mutase; Va 52.7 19 0.00041 32.2 3.8 52 138-206 16-67 (177)
27 cd03565 VHS_Tom1 VHS domain fa 42.7 93 0.002 26.0 6.3 69 142-210 38-122 (141)
28 PRK12595 bifunctional 3-deoxy- 40.9 41 0.00088 32.6 4.4 72 138-244 15-86 (360)
29 PRK06034 hypothetical protein; 37.8 51 0.0011 31.3 4.4 64 138-235 20-84 (279)
30 TIGR01808 CM_M_hiGC-arch monof 36.8 44 0.00096 25.1 3.2 48 138-202 11-58 (74)
31 PF02252 PA28_beta: Proteasome 35.5 86 0.0019 27.0 5.1 68 112-182 31-111 (150)
32 PF11159 DUF2939: Protein of u 34.7 90 0.0019 24.0 4.7 35 170-204 21-55 (95)
33 PF00790 VHS: VHS domain; Int 28.2 1.1E+02 0.0024 25.0 4.5 67 142-208 42-123 (140)
34 COG0337 AroB 3-dehydroquinate 25.0 1.3E+02 0.0029 29.5 5.0 74 135-212 160-235 (360)
35 PHA03147 hypothetical protein; 23.6 29 0.00063 32.9 0.3 118 79-208 82-227 (280)
36 PRK07857 hypothetical protein; 20.7 1E+02 0.0023 25.3 2.9 45 139-200 40-84 (106)
37 cd03561 VHS VHS domain family; 20.1 3.3E+02 0.0071 22.1 5.7 67 142-208 37-117 (133)
No 1
>PLN02344 chorismate mutase
Probab=100.00 E-value=4.7e-133 Score=908.80 Aligned_cols=252 Identities=65% Similarity=1.106 Sum_probs=245.2
Q ss_pred CCCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCCCCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCCCC
Q 025389 2 ALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFF 81 (253)
Q Consensus 2 ~~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~PFf 81 (253)
..+++|||||||++||||||||||+||||||||+|+.+|++|+++++||+|||+||||+|||++||++|||+||||||||
T Consensus 32 ~~~~~L~L~~IR~~LIR~EDTIiF~LIERaqf~~N~~~Y~~~~~~~~~f~gS~le~~l~etE~lha~vrRY~sPDE~PFF 111 (284)
T PLN02344 32 DESEVLSLDSIRSSLIRQEDTIIFSLIERAQFPYNAPTYDPNAFGVPGFHGSLVEFMVRETEALHAKVGRYKSPDEHPFF 111 (284)
T ss_pred CccccccHHHHHHHHHHhhhHHHHHHHHHhhcccCccccCCCCcCCCCCCccHHHHHHHHHHHHHHhhcccCCCCcCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccCCCCCCchhHHHhhHHHHHHhHhhhhhchhhhhhc
Q 025389 82 PDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVK 161 (253)
Q Consensus 82 P~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~gdd~nygSta~~Di~cLQALSrRIHyGKFVAEaK 161 (253)
|++||+|||||++||+||||+|++||||++||+|||++|||++|++||||||||||+||++|||||||||||||||||||
T Consensus 112 P~~Lp~pilpp~~yP~vLhp~a~~iNiN~~I~~~Y~~~ilP~~~~~Gdd~NyGSta~cDi~cLQALSrRIHyGKFVAEaK 191 (284)
T PLN02344 112 PEDLPEPVLPPLQYPQVLHPAADSININKAIWDMYFNDLLPLLVKEGDDGNYGSTAVCDLACLQALSKRIHYGKFVAEAK 191 (284)
T ss_pred hhhcccccCCCCCCCcccCCCccccchhHHHHHHHHHHhchhhcCCCCccccHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCC-CCCCCccccChHHHHHhhcccccccc
Q 025389 162 FRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGND-GDKQARFKVDPSVVSRLYGDWIMPFT 240 (253)
Q Consensus 162 F~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~-~~~~~~~Ki~p~~V~~lY~~~VIPLT 240 (253)
||++|+.|++||+|||++|||++|||++||++||+||++||++|||||+.++. +.+++.+||||++|++||++||||||
T Consensus 192 F~~~p~~y~~lI~a~D~dglm~llT~~aVE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~~KI~p~~v~~lY~~~ViPLT 271 (284)
T PLN02344 192 FRESPEEYEPAIRAQDADGLMKLLTFEAVEEAVKKRVEKKARTFGQEVTLSGEEDGADPKYKVDPSLVARLYGEWIMPLT 271 (284)
T ss_pred hhcCHHHHHHHHHhhCHHHHHHHhhhHHHHHHHHHHHHHHHHhhCCCCCCCCcccccCCCcccCHHHHHHHHHhceeeCc
Confidence 99999999999999999999999999999999999999999999999986532 23467899999999999999999999
Q ss_pred hHHHHHHHHhhcC
Q 025389 241 KLVQVEYLLRRLD 253 (253)
Q Consensus 241 KeVEVeYLlrRLd 253 (253)
|+|||+|||||||
T Consensus 272 K~VeVeYLLrRLd 284 (284)
T PLN02344 272 KEVQVEYLLRRLD 284 (284)
T ss_pred hHHHHHHHHHhcC
Confidence 9999999999997
No 2
>TIGR01802 CM_pl-yst monofunctional chorismate mutase, eukaryotic type. This model represents the plant and yeast (plastidic) chorismate mutase. These CM's are distinct from other forms by the presence of an extended regulatory domain.
Probab=100.00 E-value=6e-132 Score=887.27 Aligned_cols=243 Identities=49% Similarity=0.878 Sum_probs=237.5
Q ss_pred cChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCCCC-CCCCCchHHHHHHHhHhhhhhhccccCCCCCCCCCCCCC
Q 025389 7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYAS-FPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKL 85 (253)
Q Consensus 7 l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~~~-~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~PFfP~~L 85 (253)
|||||||++||||||||||+||||||||+|+.+|++|+|+ ++||+|||+||||+|||++||++|||+|||||||||++|
T Consensus 1 L~L~~IR~~LiR~EDTIiF~LIERaqf~~N~~~Y~~~~~~~~~~f~gS~le~~l~etE~lha~vrRY~sPDE~PFfP~~L 80 (246)
T TIGR01802 1 LNLENIRSQLIRQEDTIIFKLIERAQFAYNKKVYEAGAFGEIPNFDGSFLDYLLSETEKLHARVRRFESPDEHPFFPDKL 80 (246)
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHhhcccCchhcCCCCcCCCCCCcccHHHHHHHHHHHHHHHhcccCCCCcCCCChhhc
Confidence 7999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccCC--CCCCchhHHHhhHHHHHHhHhhhhhchhhhhhccc
Q 025389 86 PHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEG--DDGNYASTATSDLACLQALSRRIHYGKFVAEVKFR 163 (253)
Q Consensus 86 p~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~g--dd~nygSta~~Di~cLQALSrRIHyGKFVAEaKF~ 163 (253)
|+|||||++||+||||.|++||||++||+|||++|||++|++| |||||||||+||++|||||||||||||||||||||
T Consensus 81 p~pilpp~~yp~vLhp~a~~iNvN~~I~~~Y~~~ilP~~~~~~g~dd~NyGSta~cDi~cLQALSrRIHyGKFVAEaKF~ 160 (246)
T TIGR01802 81 PKPILPPLKYPKILHPYAPSVNVNSKIKKVYIEDIVPLISKRGGDDDGNYGSTATCDIECLQSLSRRIHFGKFVAEAKFQ 160 (246)
T ss_pred ccccCCCCCCCcccCCCccccchhHHHHHHHHHHhchHhhcCCCCCcccchHHHHHHHHHHHHHHHHhhhhhhHhHHHHh
Confidence 9999999999999999999999999999999999999999887 88999999999999999999999999999999999
Q ss_pred cChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccccChHHHHHhhcccccccchHH
Q 025389 164 DAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLV 243 (253)
Q Consensus 164 ~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~Ki~p~~V~~lY~~~VIPLTKeV 243 (253)
++|+.|++||+|+|++|||++|||++||++||+||++||++|||||+.++ +..+||||++|++||++|||||||+|
T Consensus 161 ~~p~~y~~lI~a~D~~glm~llT~~aVE~~Vl~Rv~~KA~~yGqd~~~~~----~~~~KI~p~~v~~lY~~~viPLTK~V 236 (246)
T TIGR01802 161 ADPEKYTKLIKAKDVEGIMKNITDPAVEEKILERLAKKARVYGVDPTVPE----ESGRKIDPEYVVDIYKDWVIPLTKEV 236 (246)
T ss_pred hCHHHHHHHHHhhcHHHHHHHhhhHHHHHHHHHHHHHHHHhhCCCCCCCC----CCCCCcCHHHHHHHHHhceecCchHH
Confidence 99999999999999999999999999999999999999999999998642 44579999999999999999999999
Q ss_pred HHHHHHhhcC
Q 025389 244 QVEYLLRRLD 253 (253)
Q Consensus 244 EVeYLlrRLd 253 (253)
||+|||||||
T Consensus 237 eVeYLLrRLd 246 (246)
T TIGR01802 237 EVEYLLRRLD 246 (246)
T ss_pred HHHHHHHhcC
Confidence 9999999997
No 3
>KOG0795 consensus Chorismate mutase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-126 Score=843.50 Aligned_cols=251 Identities=57% Similarity=1.014 Sum_probs=243.9
Q ss_pred CCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCCCCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCCCCC
Q 025389 3 LAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFP 82 (253)
Q Consensus 3 ~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~PFfP 82 (253)
.|++|+|++||++||||||||||+||||||||+|+++|+++++.++||+|||+|||++|||++||+||||+|||||||||
T Consensus 11 ~s~~L~Le~IR~sLIRqEDsIIF~llERa~f~~n~~~ye~~~~~~~gf~gSl~e~~v~etEk~hakV~Ry~sPdE~PFfp 90 (262)
T KOG0795|consen 11 ESEVLKLENIRDSLIRQEDSIIFNLLERAQFPYNADVYEENAFGMEGFKGSLLEYMVRETEKLHAKVRRYESPDEHPFFP 90 (262)
T ss_pred ccceeeHHhHHHHHHhhhhHHHHHHHHHhccCCCccccccCCCCCCCcchHHHHHHHHhHHHHHHHHhcccCCccCCCcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccCCCCCCchhHHHhhHHHHHHhHhhhhhchhhhhhcc
Q 025389 83 DKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKF 162 (253)
Q Consensus 83 ~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~gdd~nygSta~~Di~cLQALSrRIHyGKFVAEaKF 162 (253)
++||+|||||++||++|||+|.+||||++||+|||++|||+++++||||||||||+||++|||+||||||||||||||||
T Consensus 91 d~lpepilP~~~yp~~Lhp~a~svNiNkkIw~~Yf~~lvP~ivkpGDDgNygSta~cD~~CLQ~LSrRIHyGKFVAEaKf 170 (262)
T KOG0795|consen 91 DNLPEPILPPIQYPQVLHPYAPSVNINKKIWNMYFKELVPLIVKPGDDGNYGSTAVCDIECLQSLSRRIHYGKFVAEAKF 170 (262)
T ss_pred ccCCcccCCCCCCCcccccCCcccchhHHHHHHHHHHHhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCC-CCCCCccccChHHHHHhhcccccccch
Q 025389 163 RDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGND-GDKQARFKVDPSVVSRLYGDWIMPFTK 241 (253)
Q Consensus 163 ~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~-~~~~~~~Ki~p~~V~~lY~~~VIPLTK 241 (253)
|++|+.|+++|++||++|||++||+++||++|++||++||++||||+..+.+ ....+.+||+|++|++||++|||||||
T Consensus 171 ~~~p~~Ye~aIkaqD~~~lm~~lt~~~vEe~vkkRv~~Ka~~yGqdvk~~~~~t~es~~ykI~p~lv~~iYge~viPlTK 250 (262)
T KOG0795|consen 171 QANPEAYEKAIKAQDREGLMKLLTFEAVEEKVKKRVEKKAETYGQDVKFNVDPTEESGEYKITPELVAKIYGEWVIPLTK 250 (262)
T ss_pred hcCHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccCHHHHHHHhhheeeccch
Confidence 9999999999999999999999999999999999999999999999987643 233456999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q 025389 242 LVQVEYLLRRLD 253 (253)
Q Consensus 242 eVEVeYLlrRLd 253 (253)
+|||||||||||
T Consensus 251 eVeVeYLLrRLd 262 (262)
T KOG0795|consen 251 EVEVEYLLRRLD 262 (262)
T ss_pred hhhHHHHHHhhC
Confidence 999999999997
No 4
>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]
Probab=98.38 E-value=5e-07 Score=71.67 Aligned_cols=79 Identities=28% Similarity=0.321 Sum_probs=66.6
Q ss_pred hhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 025389 139 SDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQ 218 (253)
Q Consensus 139 ~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~ 218 (253)
+|-.||+.||+|.++++.||++|..... --+++++.|++|++|+..-|..+
T Consensus 20 iD~~ll~Ll~eR~~l~~~Va~~K~~~g~----------------~pi~d~~RE~~vl~~~~~~~~~~------------- 70 (101)
T COG1605 20 IDRELLDLLAERLELAKEVGEAKAASGK----------------LPIYDPEREEQVLERLRAEAEKG------------- 70 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------CCCCChHHHHHHHHHHHHHHHhC-------------
Confidence 8999999999999999999999999885 35788999999999999855443
Q ss_pred CccccChHHHHHhhcccccccchHHHHHHHHh
Q 025389 219 ARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLR 250 (253)
Q Consensus 219 ~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLlr 250 (253)
.++|+.+.++|+. +|...|.+|=.|+-.
T Consensus 71 ---~l~~~~i~~~f~~-i~~~~~~~q~~~~~~ 98 (101)
T COG1605 71 ---GLDPELIERLFRE-IMEASKAVQYKLLGK 98 (101)
T ss_pred ---CCCHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 4578888999986 488888888777643
No 5
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=95.45 E-value=0.027 Score=42.08 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=60.7
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
.+|-.++..|++|..+.+-||+.|-...- -+.++.-|+.|++++..+|..+|
T Consensus 6 ~iD~~i~~Ll~~R~~l~~~i~~~K~~~~~-----------------~i~d~~RE~~v~~~~~~~~~~~~----------- 57 (81)
T PF01817_consen 6 EIDREIVDLLAERMDLVRKIAEYKKENGL-----------------PIFDPDREEEVLERLRELAEEGG----------- 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSSTHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCCcHHHHHHHHHHHHHhHhCC-----------
Confidence 58999999999999999999999976643 35577889999999999998555
Q ss_pred CCccccChHHHHHhhcccccccchHHHHHH
Q 025389 218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEY 247 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeY 247 (253)
++|+.+.++|+.. |=.++.+|-+|
T Consensus 58 -----l~~~~i~~if~~i-i~~s~~~Q~~f 81 (81)
T PF01817_consen 58 -----LDPEFIERIFRAI-IEESRAIQYEF 81 (81)
T ss_dssp -----SEHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH-HHHHHHHHccC
Confidence 4677888888754 66666666554
No 6
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=94.62 E-value=0.073 Score=40.56 Aligned_cols=65 Identities=29% Similarity=0.334 Sum_probs=52.2
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+.+-||+.|-..+-. +.+++=|+.|++|++..|..+|
T Consensus 10 ~ID~~lv~Ll~~R~~~~~~ia~~K~~~~~~-----------------v~d~~Re~~vl~~~~~~a~~~g----------- 61 (82)
T TIGR01803 10 RIDLALVQALGRRMDYVKRASEFKRSHEAA-----------------IPAPERVAAVLPNAARWAEENG----------- 61 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------CCChHHHHHHHHHHHHHHHHcC-----------
Confidence 368899999999999999999999775433 4566779999999999997766
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
++|+.+..+|+..
T Consensus 62 -----l~~~~~~~if~~i 74 (82)
T TIGR01803 62 -----LDPPFVEGLFAQI 74 (82)
T ss_pred -----CCHHHHHHHHHHH
Confidence 3667777787653
No 7
>PRK08055 chorismate mutase; Provisional
Probab=94.61 E-value=0.067 Score=47.24 Aligned_cols=74 Identities=26% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 025389 142 ACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARF 221 (253)
Q Consensus 142 ~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~ 221 (253)
.++..+++|..+.+-||+.|...+- -+.+++-|+.|+++++..|..+|
T Consensus 29 ~Lv~Li~eRl~la~~VA~~K~~~~~-----------------PI~Dp~RE~~VL~~v~~~A~~~G--------------- 76 (181)
T PRK08055 29 ALATLINERLSYMKDVAGYKAEHHL-----------------PIEDLTQEQKVLAEAEEEAASNG--------------- 76 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHHhhhCC---------------
Confidence 4899999999999999999987753 35577889999999999987766
Q ss_pred ccChHHHHHhhcccccccchHHHHHHHH
Q 025389 222 KVDPSVVSRLYGDWIMPFTKLVQVEYLL 249 (253)
Q Consensus 222 Ki~p~~V~~lY~~~VIPLTKeVEVeYLl 249 (253)
++|+.+..+|++ +|=..|.+|=.|+-
T Consensus 77 -Ldp~~i~~~F~~-~I~asK~iQ~~~~a 102 (181)
T PRK08055 77 -LDPESIKPFIVA-QMDAAKAIQYRYRA 102 (181)
T ss_pred -CCHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 367788888876 48888888877764
No 8
>PRK09269 chorismate mutase; Provisional
Probab=94.53 E-value=0.053 Score=48.24 Aligned_cols=74 Identities=28% Similarity=0.323 Sum_probs=61.6
Q ss_pred HHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 025389 142 ACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARF 221 (253)
Q Consensus 142 ~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~ 221 (253)
.++..|++|.-+-+-||+.|...+- -+.+++-|++|+++++..|..+|
T Consensus 36 ~Lv~Li~eRl~la~~VA~~K~~~~~-----------------pI~Dp~RE~~VL~~v~~~A~~~g--------------- 83 (193)
T PRK09269 36 PLVDLAAQRLALADPVALSKWDSGK-----------------PIEDPPREAQVLANVEAQAPAHG--------------- 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHHhhcCC---------------
Confidence 5688999999999999999987643 45677889999999999886544
Q ss_pred ccChHHHHHhhcccccccchHHHHHHHH
Q 025389 222 KVDPSVVSRLYGDWIMPFTKLVQVEYLL 249 (253)
Q Consensus 222 Ki~p~~V~~lY~~~VIPLTKeVEVeYLl 249 (253)
++|+.|..+|++- |=..|.||-.|+-
T Consensus 84 -Ldp~~v~~iF~~~-I~aSk~iQ~~~~a 109 (193)
T PRK09269 84 -VDPDYVRRFFRDQ-IEANKLVQYALLA 109 (193)
T ss_pred -CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5778888898874 8899999988874
No 9
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=93.95 E-value=0.097 Score=39.97 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=52.0
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
.+|-.++..|++|..+.+-||+.|-...- -+.+++-|+.|++|+..+|..+|
T Consensus 10 ~ID~~il~Ll~~R~~~~~~ia~~K~~~~~-----------------~v~d~~RE~~vl~~~~~~a~~~g----------- 61 (83)
T TIGR01799 10 GVDQELLHLLAKRLELVAQVGKVKHAAGL-----------------PIYAPEREAAMLAARREEAEKAG----------- 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCCHHHHHHHHHHHHHHhhcCC-----------
Confidence 57999999999999999999999876543 35567789999999999986655
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
++|+.+.++|+..
T Consensus 62 -----l~~~~i~~if~~i 74 (83)
T TIGR01799 62 -----IAPDLIEDVLRRF 74 (83)
T ss_pred -----CCHHHHHHHHHHH
Confidence 3566777777653
No 10
>smart00830 CM_2 Chorismate mutase type II. Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.
Probab=93.89 E-value=0.077 Score=39.10 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=52.5
Q ss_pred HHhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 025389 137 ATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGD 216 (253)
Q Consensus 137 a~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~ 216 (253)
...|-.++..|++|..+.+-||+.|...+ .-+.+++-|+.|+++++.+|..+|
T Consensus 5 d~iD~~ii~Ll~~R~~l~~~i~~~K~~~~-----------------~~i~d~~Re~~vl~~~~~~a~~~~---------- 57 (79)
T smart00830 5 DAIDDQILALLAERAALAREVARLKAKNG-----------------LPIYDPEREAEVLERLRALAEGPG---------- 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCChHHHHHHHHHHHHHcccCC----------
Confidence 46799999999999999999999997642 136778889999999999886544
Q ss_pred CCCccccChHHHHHhhcc
Q 025389 217 KQARFKVDPSVVSRLYGD 234 (253)
Q Consensus 217 ~~~~~Ki~p~~V~~lY~~ 234 (253)
++|+.+..+|+.
T Consensus 58 ------l~~~~~~~if~~ 69 (79)
T smart00830 58 ------LDPELVERIFRE 69 (79)
T ss_pred ------cCHHHHHHHHHH
Confidence 467777777764
No 11
>PRK06285 chorismate mutase; Provisional
Probab=93.25 E-value=0.2 Score=39.35 Aligned_cols=77 Identities=19% Similarity=0.228 Sum_probs=61.2
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+.+-||+.|-..+- -+.+++-|+.|+.++..+|..+|
T Consensus 18 ~ID~~iv~Ll~~R~~l~~~I~~~K~~~~~-----------------~v~dp~RE~~vl~~~~~~a~~~~----------- 69 (96)
T PRK06285 18 EIDEQIIDLIAERTSLAKEIAELKKSLGM-----------------PIFDPEREDYIHEKIRKLCEEHN----------- 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHhhhCC-----------
Confidence 47889999999999999999998865533 35577889999999999987655
Q ss_pred CCccccChHHHHHhhcccccccchHHHHHHH
Q 025389 218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYL 248 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYL 248 (253)
++|+.+..+|+. ||=.+|.+|-+||
T Consensus 70 -----l~~~~i~~if~~-Ii~~s~~~Q~~~~ 94 (96)
T PRK06285 70 -----IDENIGLKIMKI-LMEHSKELQKEYL 94 (96)
T ss_pred -----CCHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 467788888875 4777777777765
No 12
>PRK09239 chorismate mutase; Provisional
Probab=93.13 E-value=0.22 Score=40.13 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=51.6
Q ss_pred HHhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 025389 137 ATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGD 216 (253)
Q Consensus 137 a~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~ 216 (253)
-.+|-.++..|++|..+.+-||+.|-..+- -+.+++-|++|++|++..|..+|
T Consensus 20 D~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~~~g---------- 72 (104)
T PRK09239 20 DNIDAALIHMLAERFKCTQAVGVLKAEHGL-----------------PPADPAREAYQIERLRQLAKDAN---------- 72 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCHHHHHHHHHHHHHHHHHCC----------
Confidence 358999999999999999999998865422 35677889999999999998777
Q ss_pred CCCccccChHHHHHhhc
Q 025389 217 KQARFKVDPSVVSRLYG 233 (253)
Q Consensus 217 ~~~~~Ki~p~~V~~lY~ 233 (253)
++|+.+.++|+
T Consensus 73 ------l~p~~~~~i~~ 83 (104)
T PRK09239 73 ------LDPDFAEKFLN 83 (104)
T ss_pred ------CCHHHHHHHHH
Confidence 35666777775
No 13
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=92.97 E-value=0.2 Score=38.00 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=52.3
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+.+-||+.|-... .-+.+++-|+.|++|+...|...|
T Consensus 10 ~iD~~i~~Ll~~R~~l~~~i~~~K~~~g-----------------~~i~d~~RE~~v~~~~~~~~~~~~----------- 61 (83)
T TIGR01791 10 EIDKSILDLIEKRIKIARKIGEIKHNNG-----------------LPITDEEREERVIERLRNTARNLG----------- 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChHHHHHHHHHHHHHHHhcC-----------
Confidence 5799999999999999999999885543 256788899999999999986544
Q ss_pred CCccccChHHHHHhhcc
Q 025389 218 QARFKVDPSVVSRLYGD 234 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~ 234 (253)
++|+.+..+|+.
T Consensus 62 -----l~~~~i~~if~~ 73 (83)
T TIGR01791 62 -----LDVLKLKEIFEI 73 (83)
T ss_pred -----CCHHHHHHHHHH
Confidence 467778888864
No 14
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=92.58 E-value=0.2 Score=38.26 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=52.0
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+..-||+.|-..+- -+.+++-|+.|++|+...|..+|
T Consensus 10 ~ID~~lv~Ll~~R~~~~~~i~~~K~~~~~-----------------~v~dp~RE~~vl~~~~~~~~~~~----------- 61 (83)
T TIGR01797 10 AIDEKLLKLLAERRELAFEVGKSKLLSHR-----------------PVRDIERERDLLQRLITLGKAYH----------- 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHhhhCC-----------
Confidence 36889999999999999999998876532 45677889999999999886654
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
++|+.+..+|+..
T Consensus 62 -----l~~~~i~~if~~i 74 (83)
T TIGR01797 62 -----LDAHYITRLFQLI 74 (83)
T ss_pred -----CCHHHHHHHHHHH
Confidence 4677778888754
No 15
>TIGR01806 CM_mono2 chorismate mutase, putative. This model represents a clade of probable chorismate mutases from alpha, beta and gamma proteobacteria as well as Mycobacterium tuberculosis and a clade of nematodes. Although the most likely function for the enzymes represented by this model is as a chorismate mutase, in no species are these enzymes the sole chorismate mutase in the genome. Also, in no case are these enzymes located in a region of the genome proximal to any other enzymes involved in chorismate pathways. Although the Pantoea enzyme has been shown to complement a CM-free mutant of E. coli, this was also shown to be the case with isochorismate-pyruvate lyase which only has a secondary (non-physiologically relevant) chorismate mutase activity. This enzyme is believed to be a homodimer and be localized to the periplasm.
Probab=92.22 E-value=0.26 Score=40.23 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=58.6
Q ss_pred HHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 025389 142 ACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARF 221 (253)
Q Consensus 142 ~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~ 221 (253)
.++..|++|..+.+-||+.|-..+- -+.+++-|+.|++|+...|+.+|
T Consensus 8 eLv~Ll~eR~~la~eVa~~K~~~~~-----------------pI~Dp~RE~~Vl~~~~~~a~~~g--------------- 55 (114)
T TIGR01806 8 QLVDAANERLQLADDVAGYKARNNL-----------------PIEDSPREEQVLDSLRAQAQSAG--------------- 55 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHhHcCC---------------
Confidence 5789999999999999999876543 35567789999999999887655
Q ss_pred ccChHHHHHhhcccccccchHHHHHHHH
Q 025389 222 KVDPSVVSRLYGDWIMPFTKLVQVEYLL 249 (253)
Q Consensus 222 Ki~p~~V~~lY~~~VIPLTKeVEVeYLl 249 (253)
++|+.+..+|+.. |=..|.+|-.|+-
T Consensus 56 -L~~~~i~~if~~I-i~~Sk~~Q~~~~~ 81 (114)
T TIGR01806 56 -LDPDYVTRFFQAQ-INANKAIQYRLVS 81 (114)
T ss_pred -CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4667788888764 7778888877763
No 16
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=88.58 E-value=1.1 Score=35.52 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=45.2
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccc
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEV 209 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~ 209 (253)
..|-.++..|++|..+-.-||+.|=..+- .+.+++=|+.|+++++..|..+|-++
T Consensus 14 ~ID~qLv~LL~~R~~~~~~ia~~K~~~~~-----------------~v~dp~Re~~vl~~~~~~a~~~gl~p 68 (94)
T TIGR01795 14 NIDAAVIHMLAERFKCTSQVGVLKANAGL-----------------APADPAREDYQIARLRRLAIDAGLDP 68 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCCHHHHHHHHHHHHHHHHHCCCCH
Confidence 46889999999999999999888754422 46677889999999999999988544
No 17
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=87.56 E-value=0.63 Score=45.12 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=52.6
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-+++..|++|.-+.+-||+.|-..+-..| +++-|+.|++|++..|+.
T Consensus 16 ~ID~~ii~Ll~~R~~~~~~I~~~K~~~~~pi~-----------------dp~RE~~vl~~~~~~a~~------------- 65 (386)
T PRK10622 16 ALDEKLLALLAERRELAVEVAKAKLLSHRPVR-----------------DIDRERDLLERLITLGKA------------- 65 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------------ChHHHHHHHHHHHHhccc-------------
Confidence 36889999999999999999999987764433 567799999999888743
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
..++|+.+.+||+..
T Consensus 66 ---~~l~~~~i~~if~~i 80 (386)
T PRK10622 66 ---HHLDAHYITRLFQLI 80 (386)
T ss_pred ---CCCCHHHHHHHHHHH
Confidence 346788888888765
No 18
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=84.99 E-value=2.1 Score=34.23 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=49.3
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+-+-||+.|-.. - -+.+++=|+.|++|+...|..+|
T Consensus 19 ~ID~~iv~LL~eR~~~~~~ia~~K~~~-~-----------------~i~d~~Re~~vl~~~~~~a~~~g----------- 69 (101)
T PRK07075 19 RLDRDIIAALGRRMQYVKAASRFKPSE-A-----------------SIPAPERVAAMLPERRRWAEQAG----------- 69 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcC-C-----------------CCCChHHHHHHHHHHHHHhhcCC-----------
Confidence 368889999999999999999988532 1 24456678999999999886544
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
++|+.+..+|+..
T Consensus 70 -----l~~~~i~~if~~I 82 (101)
T PRK07075 70 -----LDADFVEKLFAQL 82 (101)
T ss_pred -----CCHHHHHHHHHHH
Confidence 4677888888653
No 19
>PRK07248 hypothetical protein; Provisional
Probab=83.05 E-value=1.6 Score=33.37 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.3
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHH
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAM 203 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~ 203 (253)
..|-.++..|++|..+.+-||+.|-..+- -+.++.-|+.|++|+...|.
T Consensus 12 ~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~-----------------~v~d~~RE~~vl~~~~~~~~ 60 (87)
T PRK07248 12 QIDDQLVALLEKRMALVEQVVAYKKATGK-----------------PVLDTKREQVILDKVSSLVE 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHcc
Confidence 47899999999999999999999976643 35567789999999988875
No 20
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=79.69 E-value=2.6 Score=31.93 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=49.6
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|.-+.+-||+.|-..+- -+.+++=|+.|++|+...+...
T Consensus 10 ~iD~~i~~Ll~~R~~~~~~i~~~K~~~~~-----------------~i~d~~RE~~vl~~~~~~~~~~------------ 60 (81)
T TIGR01805 10 EIDDKLVVLFEERMEVVKEIAAYKKKNGI-----------------PIFDSKREQEIIDKCTKNVENK------------ 60 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHcccC------------
Confidence 47899999999999999999999976643 3456778999999998877421
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
.+|+.+..+|+..
T Consensus 61 -----~~~~~i~~if~~I 73 (81)
T TIGR01805 61 -----EYRETIEEFFRNI 73 (81)
T ss_pred -----CCHHHHHHHHHHH
Confidence 1466777887653
No 21
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=78.71 E-value=5.3 Score=29.84 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=49.4
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccc--cChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFR--DAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDG 215 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~--~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~ 215 (253)
.+|-.++..|.+|.-+-+-||+.|=. ..- -+-+++-|+.|++|+..++.
T Consensus 10 ~iD~~iv~Ll~~R~~~~~~i~~~K~~~~~~~-----------------~i~d~~Re~~vl~~~~~~~~------------ 60 (76)
T TIGR01807 10 AIDDRILDLLSERATYAQAVGELKGSGASGA-----------------SFYRPEREAQVIRRLQNLNK------------ 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----------------CcCChHHHHHHHHHHHHhcc------------
Confidence 57999999999999999999998866 322 24467779999999866531
Q ss_pred CCCCccccChHHHHHhhccc
Q 025389 216 DKQARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 216 ~~~~~~Ki~p~~V~~lY~~~ 235 (253)
..++|+.+..+|+..
T Consensus 61 -----~~l~~~~i~~if~~I 75 (76)
T TIGR01807 61 -----GPLDQEAIARIFREI 75 (76)
T ss_pred -----CCCCHHHHHHHHHHH
Confidence 235788899998753
No 22
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=78.31 E-value=3.3 Score=39.49 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=51.1
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
.+|-+++..|++|..+-+-||+.|=..+- -+.+++-|+.|++|++..|..+|
T Consensus 14 ~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~-----------------~v~d~~Re~~vl~~~~~~~~~~~----------- 65 (374)
T PRK11199 14 EVDKQLLELLAKRLELVAQVGEVKSRHGL-----------------PIYVPEREAAMLASRRAEAEALG----------- 65 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHHHHhCC-----------
Confidence 47999999999999999999999876542 34567789999999999887655
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
++|+.+.++|+..
T Consensus 66 -----l~~~~~~~i~~~i 78 (374)
T PRK11199 66 -----VPPDLIEDVLRRV 78 (374)
T ss_pred -----CCHHHHHHHHHHH
Confidence 3566677777543
No 23
>PF12491 ApoB100_C: Apolipoprotein B100 C terminal; InterPro: IPR022176 This domain family is found in eukaryotes, and is approximately 60 amino acids in length. There are two conserved sequence motifs: QLS and LIDL. ApoB100 has an essential role in the assembly and secretion of triglyceride-rich lipoproteins and lipids transport.
Probab=63.36 E-value=3.5 Score=30.70 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=18.4
Q ss_pred HHHHhHhhhh--hchhhhhhccc
Q 025389 143 CLQALSRRIH--YGKFVAEVKFR 163 (253)
Q Consensus 143 cLQALSrRIH--yGKFVAEaKF~ 163 (253)
-||..|-.+. |-||+||+|=.
T Consensus 5 KLqe~sdqls~~yEK~IaeskrL 27 (58)
T PF12491_consen 5 KLQEFSDQLSDYYEKFIAESKRL 27 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999 99999999843
No 24
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=59.49 E-value=17 Score=29.13 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=49.4
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.+++.|.+|.-+-.-||+.|=..+-. +-+++-|+.|++|+..++.
T Consensus 15 ~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~~-----------------i~dp~RE~~vl~~~~~~~~-------------- 63 (102)
T TIGR01801 15 QLNRQILALISRRGEVVAQIGHAKSAQGPN-----------------HYDPAREEQMLNELIKINP-------------- 63 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------------CCChHHHHHHHHHHHHhcC--------------
Confidence 478999999999999999999988765433 4466779999999987542
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
+.++++.+..+|+..
T Consensus 64 ---g~l~~~~i~~If~~I 78 (102)
T TIGR01801 64 ---GPFPTATIKGIFKEI 78 (102)
T ss_pred ---CCCCHHHHHHHHHHH
Confidence 235778888888753
No 25
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.83 E-value=37 Score=28.58 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=51.9
Q ss_pred HHHHHhHhhhhhchh--------hhhhccccChhhhHHHHHhcCH-HHHHHhh--------ccHHHHHHHHHHHHHHHHH
Q 025389 142 ACLQALSRRIHYGKF--------VAEVKFRDAPHEYELAIRAKDR-DALMNLL--------TYENVEQMVKKRVEKKAMV 204 (253)
Q Consensus 142 ~cLQALSrRIHyGKF--------VAEaKF~~~p~~y~~lI~a~D~-~~lm~lL--------T~~~VE~~Vl~Rv~~KA~~ 204 (253)
.|++||-|||..|.- +.|+=-...-..|-..|-.++- +.+.+++ |...|-++||+=++.=|..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999998862 3355555666677777766653 6777877 6789999999999999999
Q ss_pred hccccc
Q 025389 205 LGQEVS 210 (253)
Q Consensus 205 yGqd~~ 210 (253)
|+.++.
T Consensus 118 f~~~p~ 123 (139)
T cd03567 118 LPHEPK 123 (139)
T ss_pred hcccch
Confidence 986553
No 26
>PRK06443 chorismate mutase; Validated
Probab=52.71 E-value=19 Score=32.21 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=41.0
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhc
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLG 206 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yG 206 (253)
..|-++|+.|++|..+-.-||+.|-...- -+.+++=|+.|++|+..++..|.
T Consensus 16 ~ID~eIL~LL~kRm~la~eIg~~K~~~g~-----------------pI~Dp~RE~eVLerl~~~n~If~ 67 (177)
T PRK06443 16 ENTMDIIELIEKRRELARMIGIIKMRNGL-----------------SIRDSERENYVKNNLKSDNPLLN 67 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------CCCChHHHHHHHHHHHHhCHHHH
Confidence 46889999999999999999999976643 34456678888888888775553
No 27
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=42.71 E-value=93 Score=26.03 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred HHHHHhHhhhhhchhh---------hhhccccChhhhHHHHHhcCH-HH-HHHhh-----ccHHHHHHHHHHHHHHHHHh
Q 025389 142 ACLQALSRRIHYGKFV---------AEVKFRDAPHEYELAIRAKDR-DA-LMNLL-----TYENVEQMVKKRVEKKAMVL 205 (253)
Q Consensus 142 ~cLQALSrRIHyGKFV---------AEaKF~~~p~~y~~lI~a~D~-~~-lm~lL-----T~~~VE~~Vl~Rv~~KA~~y 205 (253)
.|++||-|||.+|+=. .|+=-......|-..|-.++- +. |.+++ +...|-.+|++-++.=|..|
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 5789999999877632 244444555566666655553 44 66666 34688999999999999998
Q ss_pred ccccc
Q 025389 206 GQEVS 210 (253)
Q Consensus 206 Gqd~~ 210 (253)
+.+++
T Consensus 118 ~~~~~ 122 (141)
T cd03565 118 RGSPD 122 (141)
T ss_pred CCCcc
Confidence 76664
No 28
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=40.90 E-value=41 Score=32.56 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=52.2
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
.+|-.++..|++|..+-+-||+.|=...- -+-+++-|+.|++|+..+..
T Consensus 15 ~ID~eIl~LL~~R~~~~~~I~~~K~~~g~-----------------pi~dp~RE~~vl~~~~~~~~-------------- 63 (360)
T PRK12595 15 EINLQLLELLSKRGELVQEIGEEKTKQGT-----------------KRYDPVREREMLDMIAENNE-------------- 63 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHhcc--------------
Confidence 48999999999999999999988855432 34467789999999976321
Q ss_pred CCccccChHHHHHhhcccccccchHHH
Q 025389 218 QARFKVDPSVVSRLYGDWIMPFTKLVQ 244 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVE 244 (253)
...+++.+..+|+.. |=..+.+|
T Consensus 64 ---g~l~~~~i~~If~~I-~~~Sr~~Q 86 (360)
T PRK12595 64 ---GPFEDSTIQHLFKEI-FKASLELQ 86 (360)
T ss_pred ---CCCCHHHHHHHHHHH-HHHHHHHH
Confidence 245788888888764 44444443
No 29
>PRK06034 hypothetical protein; Provisional
Probab=37.76 E-value=51 Score=31.26 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=45.5
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhcccc-ChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRD-APHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGD 216 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~-~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~ 216 (253)
..|-++++.|.+|..+-.-|++.|=.. +...| +++=|+.|++|+..+++
T Consensus 20 ~ID~eLl~LL~eR~~lv~~Va~~K~~~~~~pv~-----------------dP~RE~evl~rl~~~~~------------- 69 (279)
T PRK06034 20 AIDEELHQLLMERGDIIDRLIAVKRTQEVGSAF-----------------RPGREADMMRRLVSRHR------------- 69 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcc-----------------ChHHHHHHHHHHHHhcc-------------
Confidence 368899999999999999999998643 12223 34447788888866542
Q ss_pred CCCccccChHHHHHhhccc
Q 025389 217 KQARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 217 ~~~~~Ki~p~~V~~lY~~~ 235 (253)
..++++.|.++|+..
T Consensus 70 ----g~L~~~~ie~Ifr~I 84 (279)
T PRK06034 70 ----GILPLDTVESIWRVI 84 (279)
T ss_pred ----CCCCHHHHHHHHHHH
Confidence 124677777787764
No 30
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=36.79 E-value=44 Score=25.14 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=37.4
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHH
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKA 202 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA 202 (253)
..|-.++..|++|.-+..-||+.|-..+- -+.+++-|+.|++|+...+
T Consensus 11 ~ID~~ii~LL~~R~~~~~~i~~~K~~~~~-----------------~i~d~~RE~~vl~~~~~~~ 58 (74)
T TIGR01808 11 RLDAEILALVKRRAEISQAIGKARMASGG-----------------TRLVHSREMKVIERYSELG 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHhC
Confidence 36889999999999999999998866533 3456677888888885443
No 31
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=35.53 E-value=86 Score=26.98 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=38.1
Q ss_pred HHHHHHHhhhcccccCCCCCCchhHHHhhHH-----------HHHHhHhhhhh--chhhhhhccccChhhhHHHHHhcCH
Q 025389 112 IWDMYFNQLLPLFVAEGDDGNYASTATSDLA-----------CLQALSRRIHY--GKFVAEVKFRDAPHEYELAIRAKDR 178 (253)
Q Consensus 112 I~~~Y~~~llP~~~~~gdd~nygSta~~Di~-----------cLQALSrRIHy--GKFVAEaKF~~~p~~y~~lI~a~D~ 178 (253)
+.++++..++|.+ +|..|+|-++--++. -++--..+-|- ||-|+-+--.-+-+.|..+|...|.
T Consensus 31 ~vk~WI~l~IPki---EDGNNFGV~VQeevl~~l~~v~~~a~~~~~~i~~Y~~~Ra~~v~k~~K~p~v~DY~~~v~e~De 107 (150)
T PF02252_consen 31 TVKMWIQLLIPKI---EDGNNFGVSVQEEVLEELRAVESKAENFLDQISKYFSARAKAVSKAAKYPHVEDYRQAVHELDE 107 (150)
T ss_dssp HHHHHHHHT--------SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTBTHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc---ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3468888899987 355789988765541 12222233444 6677666445567889999999985
Q ss_pred HHHH
Q 025389 179 DALM 182 (253)
Q Consensus 179 ~~lm 182 (253)
+..-
T Consensus 108 k~~~ 111 (150)
T PF02252_consen 108 KEYI 111 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 32
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=34.71 E-value=90 Score=24.01 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=31.7
Q ss_pred HHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 025389 170 ELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMV 204 (253)
Q Consensus 170 ~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~ 204 (253)
..+|+++|.+.+.+.+-.++|-..+++++......
T Consensus 21 ~~Ai~~~D~~~l~~~VD~~avr~slk~ql~~~~~~ 55 (95)
T PF11159_consen 21 RQAIQAHDAAALARYVDFPAVRASLKDQLNAELVS 55 (95)
T ss_pred HHHHHHcCHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999877665
No 33
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.20 E-value=1.1e+02 Score=25.05 Aligned_cols=67 Identities=15% Similarity=0.322 Sum_probs=42.0
Q ss_pred HHHHHhHhhhhhch--------hhhhhccccChhhhHHHHHhcC-HHHHHHhhccHH------HHHHHHHHHHHHHHHhc
Q 025389 142 ACLQALSRRIHYGK--------FVAEVKFRDAPHEYELAIRAKD-RDALMNLLTYEN------VEQMVKKRVEKKAMVLG 206 (253)
Q Consensus 142 ~cLQALSrRIHyGK--------FVAEaKF~~~p~~y~~lI~a~D-~~~lm~lLT~~~------VE~~Vl~Rv~~KA~~yG 206 (253)
.|+++|-+||..|. .|.|+=.......|...|-.++ .+.|.++++++. |-+++++-|..=+..|+
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 57899999998874 3456656666667766665554 356666666543 55555555555555554
Q ss_pred cc
Q 025389 207 QE 208 (253)
Q Consensus 207 qd 208 (253)
.+
T Consensus 122 ~~ 123 (140)
T PF00790_consen 122 SD 123 (140)
T ss_dssp TS
T ss_pred CC
Confidence 33
No 34
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=25.03 E-value=1.3e+02 Score=29.52 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=55.0
Q ss_pred hHHHhhHHHHHHhH-hhhhhch-hhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCC
Q 025389 135 STATSDLACLQALS-RRIHYGK-FVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLG 212 (253)
Q Consensus 135 Sta~~Di~cLQALS-rRIHyGK-FVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~ 212 (253)
..+.+|..+|..|. |.++=|. .|.--=|-++++-|.-|=.. .+.+. .+-. +.++.|.+=++.||.+=++|....
T Consensus 160 ~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~--~~~l~-~~~~-~l~~~I~rs~~~Ka~VV~~De~E~ 235 (360)
T COG0337 160 KAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEEN--LDALL-ALDP-ALEELIARSCQIKAEVVAQDEKES 235 (360)
T ss_pred cEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHH--HHHHH-hcch-HHHHHHHHHHHHhhHHhhcCccch
Confidence 47889999999999 5577774 44444577799888665544 44444 2222 589999999999999999999743
No 35
>PHA03147 hypothetical protein; Provisional
Probab=23.61 E-value=29 Score=32.90 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCCCCCCCCC---C-CCCCCCCccccCCCCCCchhHHHHHHHHHh--------------hhccccc-CCCCCCchhHHHh
Q 025389 79 PFFPDKLPHS---F-VPPFKYPQVLHPAGTSINKNKIIWDMYFNQ--------------LLPLFVA-EGDDGNYASTATS 139 (253)
Q Consensus 79 PFfP~~Lp~p---i-lpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~--------------llP~~~~-~gdd~nygSta~~ 139 (253)
|--|-.+|.+ + |+|.-||.|+||+ .-++-..--+.||-+ +-|.+++ +|.++||+.+
T Consensus 82 pLNPY~~p~~s~l~~lgP~~~p~vih~n--P~~~~rgC~~~~fCk~~~~MPiIkT~~G~~YPNfTk~~GspanY~~A--- 156 (280)
T PHA03147 82 PLNPYRVPGNSVEGGLGQRVPPTVVHIN--PAEIFEGCDDAIFCKLPLPMPIINTTHGRIYPNFTKTGGSPANYKLA--- 156 (280)
T ss_pred cCCceecCCCceEeccCCCCCCceeecC--HHHHHhhcCCceEeccCCCCceeecCCceecCCcccCCCCcccHHHH---
Confidence 3445567777 3 7899999999986 222222222223322 2344444 4567888876
Q ss_pred hHHHHHHhH---------hhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhccc
Q 025389 140 DLACLQALS---------RRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQE 208 (253)
Q Consensus 140 Di~cLQALS---------rRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd 208 (253)
++.|++ -=||+|.-.--++ +.-.|+. .++-=..+|.-|=-|=.=|.-.+.|=+-||.-||.+
T Consensus 157 ---L~~A~~lmnN~~Ct~~tI~~~~~~~s~r---N~T~w~~-~k~~~l~alfiLq~nCHPEav~i~k~~~~~~~~gIn 227 (280)
T PHA03147 157 ---LERLFGLMNNQQCNGEIISQKETQFASR---NHTEFEN-LKAMFILALLVLQKNCHPEAVEIVKGKIKLENYGIN 227 (280)
T ss_pred ---HHHHHHHhcCCCCCcceEEccccccCCc---cchHHHH-HHHHHHHHHHHHhcCCChhhhhhhhhhhhhhhcccc
Confidence 344444 2477775422221 1112221 122123566666566556777788889999999933
No 36
>PRK07857 hypothetical protein; Provisional
Probab=20.67 E-value=1e+02 Score=25.29 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=34.8
Q ss_pred hhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHH
Q 025389 139 SDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEK 200 (253)
Q Consensus 139 ~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~ 200 (253)
.|-+++..|++|.-+..-||+.|-..+-..| +++=|+.|++|+..
T Consensus 40 ID~eIl~LL~eR~~la~eIg~~K~~~g~pI~-----------------dp~RE~eVl~rl~~ 84 (106)
T PRK07857 40 LDAEILALVKRRTEVSQAIGKARMASGGTRL-----------------VHSREMKVIERYRE 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-----------------ChHHHHHHHHHHHH
Confidence 6889999999999999999999977765444 34456667766644
No 37
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.09 E-value=3.3e+02 Score=22.13 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=42.5
Q ss_pred HHHHHhHhhhhhch--------hhhhhccccChhhhHHHHHhcCH-HHHHHhh-----ccHHHHHHHHHHHHHHHHHhcc
Q 025389 142 ACLQALSRRIHYGK--------FVAEVKFRDAPHEYELAIRAKDR-DALMNLL-----TYENVEQMVKKRVEKKAMVLGQ 207 (253)
Q Consensus 142 ~cLQALSrRIHyGK--------FVAEaKF~~~p~~y~~lI~a~D~-~~lm~lL-----T~~~VE~~Vl~Rv~~KA~~yGq 207 (253)
.|++||-+||.+|- .+-|+=.......|...|-.++. +.+.+++ |++.|-+++++=++.=+..|+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 46788888888774 23344444555556555555432 3355555 4567888888888888887775
Q ss_pred c
Q 025389 208 E 208 (253)
Q Consensus 208 d 208 (253)
+
T Consensus 117 ~ 117 (133)
T cd03561 117 H 117 (133)
T ss_pred C
Confidence 5
Done!