Query 025389
Match_columns 253
No_of_seqs 126 out of 170
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 5csm_A Chorismate mutase; chor 100.0 1E-131 4E-136 889.6 22.1 247 2-253 5-255 (256)
2 3ret_A Salicylate biosynthesis 94.8 0.054 1.8E-06 41.6 5.9 77 138-249 19-95 (101)
3 1ecm_A Endo-oxabicyclic transi 93.9 0.064 2.2E-06 41.5 4.5 77 138-248 16-92 (109)
4 3rmi_A Chorismate mutase prote 93.3 0.11 3.9E-06 41.0 5.1 77 138-248 23-99 (114)
5 2gtv_X CM, chorismate mutase; 90.8 0.15 5.1E-06 40.1 3.0 78 138-249 14-99 (104)
6 2d8d_A Aroag, phospho-2-dehydr 90.8 0.2 6.7E-06 37.4 3.6 64 138-235 14-77 (90)
7 2fp1_A Chorismate mutase; alph 89.8 0.32 1.1E-05 40.8 4.4 74 141-248 7-80 (166)
8 2gbb_A Putative chorismate mut 87.6 0.36 1.2E-05 40.2 3.2 72 143-248 6-77 (156)
9 2vkl_A RV0948C/MT0975; helical 81.0 0.49 1.7E-05 35.9 1.1 62 138-235 23-84 (90)
10 3nvt_A 3-deoxy-D-arabino-heptu 75.0 2.8 9.6E-05 39.3 4.6 64 138-235 39-102 (385)
11 3ldz_A STAM-1, signal transduc 47.6 39 0.0013 26.9 6.0 25 186-210 97-121 (140)
12 1ybz_A Chorismate mutase; cons 43.9 15 0.00051 27.7 2.8 46 138-200 28-73 (91)
13 1juq_A ADP-ribosylation factor 40.2 41 0.0014 27.8 5.2 68 142-209 50-134 (171)
14 3g2s_A C-terminal fragment of 32.8 63 0.0022 26.2 5.1 66 142-207 48-130 (149)
15 1elk_A Target of MYB1; superhe 31.3 72 0.0025 25.7 5.2 68 142-209 53-136 (157)
16 1wlz_A DJBP, CAP-binding prote 29.1 63 0.0021 22.6 4.0 33 220-253 38-70 (105)
17 1u7k_A GAG polyprotein; capsid 28.9 71 0.0024 26.2 4.7 44 161-209 29-82 (131)
18 1dvp_A HRS, hepatocyte growth 26.4 1.2E+02 0.0041 25.4 5.9 70 142-211 42-123 (220)
19 4ath_A MITF, microphthalmia-as 24.9 85 0.0029 23.8 4.1 30 105-136 4-33 (83)
20 3zyq_A Hepatocyte growth facto 24.2 1.1E+02 0.0038 26.0 5.3 26 185-210 100-125 (226)
21 1mhq_A ADP-ribosylation factor 22.0 1.2E+02 0.0042 24.3 4.9 68 142-209 38-122 (148)
22 3rru_A TOM1L1 protein; structu 21.9 50 0.0017 26.9 2.6 79 142-234 53-147 (152)
No 1
>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric protein, complex (ISOM peptide), transition state analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} SCOP: a.130.1.2 PDB: 3csm_A* 2csm_A* 4csm_A* 1csm_A*
Probab=100.00 E-value=1.1e-131 Score=889.61 Aligned_cols=247 Identities=39% Similarity=0.721 Sum_probs=237.2
Q ss_pred CCCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCC--CCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCC
Q 025389 2 ALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSY--ASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESP 79 (253)
Q Consensus 2 ~~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~--~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~P 79 (253)
.++++||||+||++||||||||||+|||||||++|+.+|++|+ ++++||+|||+||||+|||++||++|||+||||||
T Consensus 5 ~~~~~L~L~~IR~~LiR~EDTIiF~LIERaqf~~N~~~Y~~~~~~~~~~~f~gS~ld~~l~etE~~ha~vrRY~sPdE~P 84 (256)
T 5csm_A 5 KPETVLNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDETP 84 (256)
T ss_dssp SHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGTSTTCTTSCCTTCCSCHHHHHHHHHHHHHHHTTGGGSTTCCC
T ss_pred CccccCcHHHHHHHHHhhhhhhhhhHHHhhhcccChHhhCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCCCCcCC
Confidence 3578899999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhccccc-CC-CCCCchhHHHhhHHHHHHhHhhhhhchhh
Q 025389 80 FFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA-EG-DDGNYASTATSDLACLQALSRRIHYGKFV 157 (253)
Q Consensus 80 FfP~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~-~g-dd~nygSta~~Di~cLQALSrRIHyGKFV 157 (253)
|||++||+|||||++||++|||++++||||++||+||+++|||++|+ .| |||||||||+||++|||||||||||||||
T Consensus 85 FfP~~Lp~piLpp~~yP~vLhp~~~~vNvN~~I~~~Y~~~ilP~~~~~~G~dd~NyGSta~~Di~cLQALSRRIHfGKFV 164 (256)
T 5csm_A 85 FFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFV 164 (256)
T ss_dssp SCTTTCCCCSSCCCCCCCCSCTTGGGCCCHHHHHHHHHHHTHHHHSSSSSCCTTCHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCccccccccCCCCCCCcccCCCCCcccccHHHHHHHHHHhhHHhhCCCCCCCCccHHHHHHHHHHHHHHHHHHHcchhH
Confidence 99999999999999999999999999999999999999999999998 78 67999999999999999999999999999
Q ss_pred hhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccccChHHHHHhhccccc
Q 025389 158 AEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIM 237 (253)
Q Consensus 158 AEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~Ki~p~~V~~lY~~~VI 237 (253)
||||||++|+.|++||+++|++|||++|||++||++||+||++||++||||++. .++.+||||++|++||++|||
T Consensus 165 AEaKF~~~p~~y~~lI~a~D~~~im~llT~~aVE~~Vl~Rv~~KA~~yGqd~~~-----~~~~~Ki~p~~v~~lY~~~vI 239 (256)
T 5csm_A 165 AEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTE-----RRIERRISPEYLVKIYKEIVI 239 (256)
T ss_dssp HHHHHHTCHHHHHHHHHTTCHHHHHHHTCCHHHHHHHHHHHHHHHHHTTSCCC-----------CCCHHHHHHHHHHTHH
T ss_pred hHHHHhhCHHHHHHHHHccCHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCCC-----CCCCCCcCHHHHHHHHhccee
Confidence 999999999999999999999999999999999999999999999999999982 366799999999999999999
Q ss_pred ccchHHHHHHHHhhcC
Q 025389 238 PFTKLVQVEYLLRRLD 253 (253)
Q Consensus 238 PLTKeVEVeYLlrRLd 253 (253)
||||+|||+|||||||
T Consensus 240 PLTK~VEVeYLLrRLd 255 (256)
T 5csm_A 240 PITKEVEVEYLLRRLE 255 (256)
T ss_dssp HHHHHHHHHHHHTCSC
T ss_pred eCchHHHHHHHHHHhc
Confidence 9999999999999997
No 2
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=94.80 E-value=0.054 Score=41.61 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=62.1
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+-+-||+.|-. . ..+.+++-|+.|++|+...|...|
T Consensus 19 ~iD~~il~LL~~R~~~~~~i~~~K~~-~-----------------~~i~dp~RE~~vl~~~~~~a~~~~----------- 69 (101)
T 3ret_A 19 RIDLDIVQALGRRMDYVKAASRFEAS-E-----------------AAIPAPERVAAMLPERARWAEENG----------- 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCSS-G-----------------GGTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-C-----------------CCCCCHHHHHHHHHHHHHHhhhCC-----------
Confidence 47999999999999999999999932 2 246678899999999999987655
Q ss_pred CCccccChHHHHHhhcccccccchHHHHHHHH
Q 025389 218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYLL 249 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLl 249 (253)
++|+.|.++|+.. |=..+..|-.++-
T Consensus 70 -----l~~~~i~~if~~i-i~~s~~~Q~~~~~ 95 (101)
T 3ret_A 70 -----LDAPFVEGLFAQI-IHWYIAEQIKYWR 95 (101)
T ss_dssp -----SCHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4778899999864 6667777766654
No 3
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=93.85 E-value=0.064 Score=41.47 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=59.8
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+-+-||+.|-...- -+.+++-|+.|++|+...|...|
T Consensus 16 ~iD~~L~~LL~~R~~~~~~v~~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~~~~----------- 67 (109)
T 1ecm_A 16 ALDEKLLALLAERRELAVEVGKAKLLSHR-----------------PVRDIDRERDLLERLITLGKAHH----------- 67 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHHHHhHhCC-----------
Confidence 47999999999999999999999976432 35567889999999999987655
Q ss_pred CCccccChHHHHHhhcccccccchHHHHHHH
Q 025389 218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYL 248 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYL 248 (253)
++|+.+.++|+.. |=..+.+|-.|+
T Consensus 68 -----l~~~~i~~if~~i-i~~s~~~q~~~~ 92 (109)
T 1ecm_A 68 -----LDAHYITRLFQLI-IEDSVLTQQALL 92 (109)
T ss_dssp -----CCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4677888888764 445555665554
No 4
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=93.27 E-value=0.11 Score=41.03 Aligned_cols=77 Identities=17% Similarity=0.102 Sum_probs=60.2
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+-+-||+.|-...- -+.+++-|+.|++|+...|...|
T Consensus 23 ~ID~~il~LL~~R~~~~~~I~~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~~~~----------- 74 (114)
T 3rmi_A 23 NFDITLIHILAERFRCTQAIGRLKARYNL-----------------PAVDPLREQYQIKRLRKLAIDTH----------- 74 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcCHHHHHHHHHHHHHHHHhCC-----------
Confidence 36889999999999999999999943221 46788889999999999986655
Q ss_pred CCccccChHHHHHhhcccccccchHHHHHHH
Q 025389 218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYL 248 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYL 248 (253)
++|+.|.++|+.. |=..+..|-+++
T Consensus 75 -----l~~~~i~~if~~I-i~~S~~~Q~~~~ 99 (114)
T 3rmi_A 75 -----FDPDFAEKFLKFI-IKEVVHQHEVIA 99 (114)
T ss_dssp -----CCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4778889999864 556666665554
No 5
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=90.80 E-value=0.15 Score=40.05 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=61.6
Q ss_pred HhhHHHH--------HHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccc
Q 025389 138 TSDLACL--------QALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEV 209 (253)
Q Consensus 138 ~~Di~cL--------QALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~ 209 (253)
..|-.+| ..|++|..+.+-||+.|-...- -+-+++-|+.|++|++..|..+|
T Consensus 14 ~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~-----------------pi~dp~RE~~vl~~~~~~~~~~~--- 73 (104)
T 2gtv_X 14 EIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGI-----------------PINDPEREKYIYDRIRKLCKEHN--- 73 (104)
T ss_dssp HHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTS-----------------CSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcChHHHHHHHHHHHHHhhcCC---
Confidence 4788999 9999999999999999865432 35577889999999999998766
Q ss_pred cCCCCCCCCCccccChHHHHHhhcccccccchHHHHHHHH
Q 025389 210 SLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLL 249 (253)
Q Consensus 210 ~~~~~~~~~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLl 249 (253)
++|+.+.++|+.. |=..|.+|-.++-
T Consensus 74 -------------l~~~~i~~if~~i-i~~s~~~Q~~~l~ 99 (104)
T 2gtv_X 74 -------------VDENIGIKIFQRL-IEHNKALQKQYLE 99 (104)
T ss_dssp -------------SCSHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3567888898864 5666777766653
No 6
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=90.77 E-value=0.2 Score=37.43 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=51.9
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
.+|-.++..|++|..+.+-||+.|-...- .+.+++-|+.|++|+...| .
T Consensus 14 ~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~~-~------------- 62 (90)
T 2d8d_A 14 RVNREILRLLSERGRLVQEIGRLQTELGL-----------------PHYDPKREEEMLAYLTAEN-P------------- 62 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CSCCHHHHHHHHHHHHHHC-C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcCHHHHHHHHHHHHHHc-c-------------
Confidence 47999999999999999999999865432 3556788999999998764 1
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
..++|+.|.++|+..
T Consensus 63 ---~~l~~~~i~~if~~i 77 (90)
T 2d8d_A 63 ---GPFPDETIRKLFKEI 77 (90)
T ss_dssp ---SSSCHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHH
Confidence 346889999999865
No 7
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=89.82 E-value=0.32 Score=40.83 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=57.2
Q ss_pred HHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCc
Q 025389 141 LACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQAR 220 (253)
Q Consensus 141 i~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~ 220 (253)
-.++..|++|..+-+-||+.|-..+- -+.+++=|+.|++|+...|..+|
T Consensus 7 ~~Lv~LLaeR~~la~~Va~~K~~~~~-----------------pI~dp~RE~eVL~r~~~~a~~~g-------------- 55 (166)
T 2fp1_A 7 AELVDAAAERLEVADPVAAFKWRAQL-----------------PIEDSGRVEQQLAKLGEDARSQH-------------- 55 (166)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTC-----------------CSCCHHHHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHHHhCC--------------
Confidence 35788999999999999999975432 35567789999999999997665
Q ss_pred cccChHHHHHhhcccccccchHHHHHHH
Q 025389 221 FKVDPSVVSRLYGDWIMPFTKLVQVEYL 248 (253)
Q Consensus 221 ~Ki~p~~V~~lY~~~VIPLTKeVEVeYL 248 (253)
++|+.|.++|+.. |=..+.+|-.|+
T Consensus 56 --L~~~~i~~ifr~I-i~~S~~~Q~~~~ 80 (166)
T 2fp1_A 56 --IDPDYVTRVFDDQ-IRATEAIEYSRF 80 (166)
T ss_dssp --CCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4678888888875 556666665554
No 8
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=87.58 E-value=0.36 Score=40.20 Aligned_cols=72 Identities=21% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccc
Q 025389 143 CLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFK 222 (253)
Q Consensus 143 cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~K 222 (253)
++..|++|..+.+-||+.|-...- -+-+++-|+.|++|+..+|..+|
T Consensus 6 Ll~LL~eR~~la~~Va~~K~~~g~-----------------pI~Dp~RE~evL~~l~~~a~~~g---------------- 52 (156)
T 2gbb_A 6 TAPLINERLSYMKDVAGYKAENHL-----------------PIEDRIQEEKVINSAMAQAESLG---------------- 52 (156)
T ss_dssp SHHHHHHHHTTHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHhhcCC----------------
Confidence 478899999999999999976542 24467789999999999997655
Q ss_pred cChHHHHHhhcccccccchHHHHHHH
Q 025389 223 VDPSVVSRLYGDWIMPFTKLVQVEYL 248 (253)
Q Consensus 223 i~p~~V~~lY~~~VIPLTKeVEVeYL 248 (253)
++|+.|.++|+.. |=..+.+|-.++
T Consensus 53 L~~~~i~~ifr~I-i~~S~~~Q~~~~ 77 (156)
T 2gbb_A 53 LNGESIKPLMVAQ-INAAKAIQYRYR 77 (156)
T ss_dssp BCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4677888888864 555566665544
No 9
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=80.96 E-value=0.49 Score=35.87 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=47.6
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-.++..|++|..+-+-||+.|-...- .+.+++-|+.|++|+..+|.
T Consensus 23 ~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~-------------- 71 (90)
T 2vkl_A 23 RLDAEILALVKRRAEVSKAIGKARMASGG-----------------TRLVHSREMKVIERYSELGP-------------- 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CCCTTTHHHHHHHHHHTTCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHcc--------------
Confidence 47899999999999999999999976532 24456668899999987663
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
.+|+.+.++|+..
T Consensus 72 -----~~p~~~e~i~r~~ 84 (90)
T 2vkl_A 72 -----DGKDLAILLLRLG 84 (90)
T ss_dssp -----HHHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHHH
Confidence 3677777777643
No 10
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=75.04 E-value=2.8 Score=39.34 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=49.9
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK 217 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~ 217 (253)
..|-++++.|.+|..+-+-||+.|=... .-+-+++-|+.|++|++..+.
T Consensus 39 ~ID~~il~LL~eR~~~~~~Va~~K~~~g-----------------~~i~dp~RE~~vl~~~~~~~~-------------- 87 (385)
T 3nvt_A 39 QLNIDLLELISKRANLVQEIGKIKGTQG-----------------SLRFDPLREREMLNTILAANE-------------- 87 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC----------------------CCCHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC-----------------CCCCChHHHHHHHHHHHHhcc--------------
Confidence 4899999999999999999999994322 146678889999999998752
Q ss_pred CCccccChHHHHHhhccc
Q 025389 218 QARFKVDPSVVSRLYGDW 235 (253)
Q Consensus 218 ~~~~Ki~p~~V~~lY~~~ 235 (253)
..++|+.|.++|+..
T Consensus 88 ---~~l~~~~i~~ifr~I 102 (385)
T 3nvt_A 88 ---GPFEDSTVQKLFKEI 102 (385)
T ss_dssp ---SSSCHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHH
Confidence 245788888888764
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=47.57 E-value=39 Score=26.85 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhccccc
Q 025389 186 TYENVEQMVKKRVEKKAMVLGQEVS 210 (253)
Q Consensus 186 T~~~VE~~Vl~Rv~~KA~~yGqd~~ 210 (253)
|++.|-++|++-+..=|..|+.++.
T Consensus 97 ~~~~Vk~kil~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 97 GHPKVCEKLKALMVEWTDEFKNDPQ 121 (140)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7889999999999998888886654
No 12
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=43.94 E-value=15 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=34.0
Q ss_pred HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHH
Q 025389 138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEK 200 (253)
Q Consensus 138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~ 200 (253)
..|-.++..|++|..+.+-||+.|-...- .+-+++-|+.|++|+..
T Consensus 28 ~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~-----------------~i~dp~RE~~vl~~~~~ 73 (91)
T 1ybz_A 28 KIDNQIISLLKKRLEIAQAIGKIKKELNL-----------------PIEDRKREEEVLRRAGE 73 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcChHHHHHHHHHHHH
Confidence 47889999999999999999999975532 23345556666666543
No 13
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.15 E-value=41 Score=27.76 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHhHhhhhhch--------hhhhhccccChhhhHHHHHhcC-HHHHHHhh--------ccHHHHHHHHHHHHHHHHH
Q 025389 142 ACLQALSRRIHYGK--------FVAEVKFRDAPHEYELAIRAKD-RDALMNLL--------TYENVEQMVKKRVEKKAMV 204 (253)
Q Consensus 142 ~cLQALSrRIHyGK--------FVAEaKF~~~p~~y~~lI~a~D-~~~lm~lL--------T~~~VE~~Vl~Rv~~KA~~ 204 (253)
.|.+||-|||.+|- -+.|+=....-..|...|-.++ -+.|.+++ |+..|-++||+-++.=+.+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 47889999998773 2445555566666666665554 25666666 4689999999999999999
Q ss_pred hcccc
Q 025389 205 LGQEV 209 (253)
Q Consensus 205 yGqd~ 209 (253)
|+.++
T Consensus 130 f~~~~ 134 (171)
T 1juq_A 130 LPEEA 134 (171)
T ss_dssp CTTCH
T ss_pred cCCCc
Confidence 97544
No 14
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=32.75 E-value=63 Score=26.17 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHHhHhhhhhchh--------hhhhccccChhhhHHHHHhcC-HHHHHHhh--------ccHHHHHHHHHHHHHHHHH
Q 025389 142 ACLQALSRRIHYGKF--------VAEVKFRDAPHEYELAIRAKD-RDALMNLL--------TYENVEQMVKKRVEKKAMV 204 (253)
Q Consensus 142 ~cLQALSrRIHyGKF--------VAEaKF~~~p~~y~~lI~a~D-~~~lm~lL--------T~~~VE~~Vl~Rv~~KA~~ 204 (253)
.|.+||-|||..+-. +.|+=-...-..|...|-.++ .+.|.+++ |+..|-++||+-++.=|.+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 468899999986521 233333334444444444443 24555565 6789999999999999988
Q ss_pred hcc
Q 025389 205 LGQ 207 (253)
Q Consensus 205 yGq 207 (253)
|+.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 863
No 15
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.33 E-value=72 Score=25.74 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHhHhhhh-hch-h-------hhhhccccChhhhHHHHHhcCH-HH-HHHhh-----ccHHHHHHHHHHHHHHHHHh
Q 025389 142 ACLQALSRRIH-YGK-F-------VAEVKFRDAPHEYELAIRAKDR-DA-LMNLL-----TYENVEQMVKKRVEKKAMVL 205 (253)
Q Consensus 142 ~cLQALSrRIH-yGK-F-------VAEaKF~~~p~~y~~lI~a~D~-~~-lm~lL-----T~~~VE~~Vl~Rv~~KA~~y 205 (253)
.|.+||-|||. ++- - +.|+=....-..|...|-.++- +. |.+++ +...|-++|++-++.=+..|
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 57889999994 552 1 2344444444455554544332 34 33444 34689999999999999998
Q ss_pred cccc
Q 025389 206 GQEV 209 (253)
Q Consensus 206 Gqd~ 209 (253)
+.++
T Consensus 133 ~~~p 136 (157)
T 1elk_A 133 RSSP 136 (157)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 7544
No 16
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=29.11 E-value=63 Score=22.55 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=26.2
Q ss_pred ccccChHHHHHhhcccccccchHHHHHHHHhhcC
Q 025389 220 RFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD 253 (253)
Q Consensus 220 ~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLlrRLd 253 (253)
..+|+.+-+..+.+..-.++|.+ |++-+++++|
T Consensus 38 ~G~i~~~el~~~l~~~g~~~~~~-e~~~l~~~~d 70 (105)
T 1wlz_A 38 TNTISREEFRAICNRRVQILTDE-QFDRLWNEMP 70 (105)
T ss_dssp SSCBCHHHHHHHHHHHTCCCCHH-HHHHHHTTSC
T ss_pred CCcCcHHHHHHHHHHhCCCCCHH-HHHHHHHHcC
Confidence 46899999999888887888764 7888887764
No 17
>1u7k_A GAG polyprotein; capsid, viral protein; 1.85A {Endogenous} SCOP: a.73.1.1 PDB: 2y4z_A 3bp9_A
Probab=28.95 E-value=71 Score=26.18 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=30.0
Q ss_pred ccccChhhhHHHHHhc------CHHHHH----HhhccHHHHHHHHHHHHHHHHHhcccc
Q 025389 161 KFRDAPHEYELAIRAK------DRDALM----NLLTYENVEQMVKKRVEKKAMVLGQEV 209 (253)
Q Consensus 161 KF~~~p~~y~~lI~a~------D~~~lm----~lLT~~~VE~~Vl~Rv~~KA~~yGqd~ 209 (253)
+|.++|++|+.+|..= +-++++ .|||-++ ++||..||+.+....
T Consensus 29 sfsedP~~~~~l~e~i~~th~pTW~D~qqLL~tLlT~EE-----r~ril~eArk~v~~~ 82 (131)
T 1u7k_A 29 SFSEDPGKLTALIESVLTTHQPTWDDCQQLLGTLLTGEE-----KQRVLLEARKAVRGN 82 (131)
T ss_dssp CTTTCHHHHHHHHHHHHHHTCCCHHHHHHHHHHHSCHHH-----HHHHHHHHHHTCBCT
T ss_pred CcccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHHH-----HHHHHHHHHHHHHhc
Confidence 5799999999999762 234333 3445442 478889999886543
No 18
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.39 E-value=1.2e+02 Score=25.40 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=43.4
Q ss_pred HHHHHhHhhhhhch--------hhhhhccccChhhhHHHHHhcC-HHHHHHhh---ccHHHHHHHHHHHHHHHHHhcccc
Q 025389 142 ACLQALSRRIHYGK--------FVAEVKFRDAPHEYELAIRAKD-RDALMNLL---TYENVEQMVKKRVEKKAMVLGQEV 209 (253)
Q Consensus 142 ~cLQALSrRIHyGK--------FVAEaKF~~~p~~y~~lI~a~D-~~~lm~lL---T~~~VE~~Vl~Rv~~KA~~yGqd~ 209 (253)
.+.+||-|||.++- .+.|+=....-..|...|-.++ .+.|.+++ ++..|.+++|+=++.=+..|+.++
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 45777888887763 2334433444444444444333 23344443 568899999999999999998666
Q ss_pred cC
Q 025389 210 SL 211 (253)
Q Consensus 210 ~~ 211 (253)
..
T Consensus 122 ~~ 123 (220)
T 1dvp_A 122 KY 123 (220)
T ss_dssp SC
T ss_pred HH
Confidence 53
No 19
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=24.93 E-value=85 Score=23.78 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHhhhcccccCCCCCCchhH
Q 025389 105 SINKNKIIWDMYFNQLLPLFVAEGDDGNYAST 136 (253)
Q Consensus 105 ~vNiN~~I~~~Y~~~llP~~~~~gdd~nygSt 136 (253)
..|||+.|++ +..++|........-|=|+.
T Consensus 4 R~nIN~~I~E--L~~LiP~~~~~~~k~nKg~I 33 (83)
T 4ath_A 4 RFNINDRIKE--LGTLIPKSNDPDMRWNKGTI 33 (83)
T ss_dssp HHHHHHHHHH--HHHHSCCCCCTTCCCSHHHH
T ss_pred hhhHHHhhhh--hhccCCCCCCcccCcchHHH
Confidence 3589999976 67788875322223566763
No 20
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.20 E-value=1.1e+02 Score=26.00 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.2
Q ss_pred hccHHHHHHHHHHHHHHHHHhccccc
Q 025389 185 LTYENVEQMVKKRVEKKAMVLGQEVS 210 (253)
Q Consensus 185 LT~~~VE~~Vl~Rv~~KA~~yGqd~~ 210 (253)
-|+..|-++||+-++.=|.+|..++.
T Consensus 100 ~~~~~Vk~kil~li~~W~~~f~~~~~ 125 (226)
T 3zyq_A 100 QVEVNVRNKILYLIQAWAHAFRNEPK 125 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTTCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 47889999999999999999987665
No 21
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.95 E-value=1.2e+02 Score=24.26 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHHhHhhhhhch-h-------hhhhccccChhhhHHHHHhcC-HHHHHHhh--------ccHHHHHHHHHHHHHHHHH
Q 025389 142 ACLQALSRRIHYGK-F-------VAEVKFRDAPHEYELAIRAKD-RDALMNLL--------TYENVEQMVKKRVEKKAMV 204 (253)
Q Consensus 142 ~cLQALSrRIHyGK-F-------VAEaKF~~~p~~y~~lI~a~D-~~~lm~lL--------T~~~VE~~Vl~Rv~~KA~~ 204 (253)
.|++||-|||..|- - +.|+=-...-..|...|-.++ -+.|.+++ |+..|-++||+-++.=|.+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46889999997662 1 123333333444544444433 24455555 5889999999999999988
Q ss_pred hcccc
Q 025389 205 LGQEV 209 (253)
Q Consensus 205 yGqd~ 209 (253)
|+.++
T Consensus 118 f~~~p 122 (148)
T 1mhq_A 118 FPEDI 122 (148)
T ss_dssp CTTCH
T ss_pred cCCCc
Confidence 87443
No 22
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=21.92 E-value=50 Score=26.91 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=45.3
Q ss_pred HHHHHhHhhhhhchhhhh---------hccccChhhhHHHHHhcCH-HH-HHHhhc-----cHHHHHHHHHHHHHHHHHh
Q 025389 142 ACLQALSRRIHYGKFVAE---------VKFRDAPHEYELAIRAKDR-DA-LMNLLT-----YENVEQMVKKRVEKKAMVL 205 (253)
Q Consensus 142 ~cLQALSrRIHyGKFVAE---------aKF~~~p~~y~~lI~a~D~-~~-lm~lLT-----~~~VE~~Vl~Rv~~KA~~y 205 (253)
.|.+||-|||.+++-.-+ +=-...-..|-..|-.++- +. |.+++. ...|-++||+-++.=|..|
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 468899999987754322 2222333334333333222 12 333443 3478888888888888777
Q ss_pred cccccCCCCCCCCCccccChHHHHHhhcc
Q 025389 206 GQEVSLGNDGDKQARFKVDPSVVSRLYGD 234 (253)
Q Consensus 206 Gqd~~~~~~~~~~~~~Ki~p~~V~~lY~~ 234 (253)
+.++. -..|..+|+.
T Consensus 133 ~~~p~--------------l~~i~~~Y~~ 147 (152)
T 3rru_A 133 PGGVD--------------VSEVKEVYLD 147 (152)
T ss_dssp SSSCC--------------CHHHHHHHHH
T ss_pred CCCCc--------------chHHHHHHHH
Confidence 65543 3466777764
Done!